Citrus Sinensis ID: 001535
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1058 | 2.2.26 [Sep-21-2011] | |||||||
| Q84JM4 | 1108 | Topless-related protein 3 | yes | no | 0.981 | 0.936 | 0.785 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.987 | 0.923 | 0.748 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.984 | 0.921 | 0.635 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.974 | 0.920 | 0.633 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.982 | 0.916 | 0.618 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.378 | 0.294 | 0.242 | 2e-12 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.527 | 0.365 | 0.209 | 8e-12 | |
| Q93847 | 395 | Uncharacterized WD repeat | yes | no | 0.188 | 0.503 | 0.25 | 3e-11 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.473 | 0.297 | 0.227 | 3e-11 | |
| Q9V3J8 | 361 | Protein will die slowly O | yes | no | 0.182 | 0.534 | 0.272 | 5e-10 |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1706 bits (4419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1053 (78%), Positives = 924/1053 (87%), Gaps = 15/1053 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGFFFN KYF+EKV AG+WD+VE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQ+KAKAV+ILV DL+VFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTKTARGIML ELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+ PNGPLAP+ VN PV + KPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPHVPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
AAANA ALA WMA AS +S+VQAAVVT + +P PQNQ+S+LK PRTPP TPG+VDYQN
Sbjct: 241 GPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT-WSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHE LMKRLRPAPS EEVTY + R Q WSL+DLP A++LHQGSTV SM+F+P T
Sbjct: 301 PDHE-LMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQNT 359
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+ GEITLWELA R+RLVS+PFKIWDM+ CS FQA I K+ PISV+RVAWSPDG
Sbjct: 360 LLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAWSPDG 419
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
N++GVAFTKHLIQLY+++G NDLRQH++IDAHVGAVNDLAFA PN+ LCV+TCGDDKLIK
Sbjct: 420 NFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIK 479
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++SGRK F FEGH+APVYSICPH+KENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 480 VWDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPG 539
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCT MLYSADG+RLFSCGTSKDGDSFLVEWNESEG+IKRTY F+KK GVVQFDT++N
Sbjct: 540 KWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSKN 599
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGED QIKFWDM+N+N+LTSTDAEGGLP LP LRF+K+GNLLAVTTADNGFKILAN
Sbjct: 600 HFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILAN 659
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
G RSLRA+E P E +RTP++ A+ + ++V NCKVER SPVR S ++NGV
Sbjct: 660 PAGFRSLRAMETPASETMRTPVDFKAVPGAPVASV------NCKVERGSPVRHSQMLNGV 713
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP+ K R +DD TDKPK WQLAEI+D QC T+P++ +S+KVV+LLYTNS G
Sbjct: 714 DPS-----KSR-IDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAG 767
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALGSNG+Q+LWKW NEQNPSGKATA+ VPQHW P+SGLLM NDV+GVNLE A PCIA
Sbjct: 768 ILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIA 827
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNN+IAIG EDSTIH
Sbjct: 828 LSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIH 887
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958
IYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADAQ+C WSIDTWEKRKSV I +P
Sbjct: 888 IYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMP 947
Query: 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 1018
AGK GDTRVQF+ DQ+R+LVVHETQLA++DASKME IRQW PQD+LSAPIS AVY+CN
Sbjct: 948 AGKAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACN 1007
Query: 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1051
SQL++ TF DGNIGVFDAD+LRLRC I+PS YL
Sbjct: 1008 SQLIYTTFRDGNIGVFDADSLRLRCRISPSAYL 1040
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1632 bits (4226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 791/1057 (74%), Positives = 895/1057 (84%), Gaps = 12/1057 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTAAAANANA-LAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDY 297
A A LAGWMAN + SSSV + VV AS P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + S+ +KVS S+ SS +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKA---SIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPI 716
Query: 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774
NG++ SR+M+KPR +D V DK KP +L EIVD QCR VTMP+S D+ SKV RLLYTN
Sbjct: 717 PNGIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTN 775
Query: 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834
S VG+LALGSNGVQ+LWKW RNEQNP+GKATAS PQHW P+SGLLMANDV N E +V
Sbjct: 776 SGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSV 834
Query: 835 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894
PCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG ED
Sbjct: 835 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 894
Query: 895 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 954
S+IHIYNVRVDEVK+KLKGHQK ITGLAFST+LNILVSSGADAQL W+ D+WEK+KS
Sbjct: 895 SSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSA 954
Query: 955 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAV 1014
I +P GK P GDTRVQF+ DQ+++LV HETQLAIYDASKME I +W PQ+ALS+PI+ A
Sbjct: 955 IQLPPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSAS 1014
Query: 1015 YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1051
YSCNSQLV+A+F DGNI VFDA++LRLRC IAPS Y+
Sbjct: 1015 YSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYM 1051
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1379 bits (3570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/1077 (63%), Positives = 828/1077 (76%), Gaps = 35/1077 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLP-VAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P + + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PTA+ LAGWM S+ SSV V+A +I + + + LKHPRTPPT +DY
Sbjct: 241 PTASPV-PTPLAGWM---SSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRHQT----WSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ +G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704
AV+ +N KI+AN+ GLR L EN E+ + I S+A +A++A S+G +
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIA-AAAAAAATSAG-----HAD 710
Query: 705 RSSPVRPSPIINGVDPTSRSM--DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
RS+ V I G++ SR+M KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 711 RSANVVS---IQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLR 767
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+K+ RL++TNS +LAL SN + LWKW RNE+N +GKATAS PQ W P+SG+LM
Sbjct: 768 V-AKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMT 826
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 827 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 886
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
QDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW
Sbjct: 887 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVW 946
Query: 943 SIDTWEKRKSVTIHIPAGK--TPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000
+ D WEK++S + +P G+ + DTRVQF+ DQ LVVHETQLAIY+ +K+E ++QW
Sbjct: 947 NTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQW 1006
Query: 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057
+++L API+ A +SC+SQLV+A+F D + VF + LRLRC + PS YL S+ N
Sbjct: 1007 AVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSN 1062
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1379 bits (3569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/1077 (63%), Positives = 818/1077 (75%), Gaps = 46/1077 (4%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLP-VAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PN AP+PVN P + ++ K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PT + LAGWM S+ SSV V+ I + + + LKHPRTPP+ VDY
Sbjct: 241 PTPSPV-PTPLAGWM---SSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH---QTWSL-DDLPRTVAVSLHQGS 345
+ D + + KR RP ++EV T+ H QT+ DDLP+TVA +L QGS
Sbjct: 297 SGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND+AF+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV TCGDDK IKVW+ +G K + FEGHEAPVYSICPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDY+APG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD + +LT+ DA+GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704
AV+ DN K++AN+ GLR L VEN E+ + I S+ + VE
Sbjct: 657 AVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPM-----------------VE 699
Query: 705 RSSPVRPSPIINGVDPTSRSM--DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
R + V P +NG SR+M KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 700 RPASVVSIPGMNG---DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMR 756
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+K+ RL++TNS +LAL SN + LWKW RN++N +GKATAS PQ W P+SG+LM
Sbjct: 757 V-TKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMT 815
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 816 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 875
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
QDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW
Sbjct: 876 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVW 935
Query: 943 SIDTWEKRKSVTIHIPAGKTPT--GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000
+ D WEK+KS + IP G++ + DTRVQF+ DQV LVVHETQLAIY+ +K+E ++QW
Sbjct: 936 NTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW 995
Query: 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057
P +API+ A +SC+SQL++ +F D I VF + LRLRC + PS YL S+ N
Sbjct: 996 -PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSN 1051
|
Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1335 bits (3455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/1077 (61%), Positives = 816/1077 (75%), Gaps = 37/1077 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFK++VH+LEKESGFFFNM+YFE+ V AG+WD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD++D AKAVDILV +LKVFSTFNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK+ARGIML ELKKLIEANPLFRDKL FP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTP-VNLPVAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DHTC PNG P+P N + +V K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPV--PQNQVSVLK--HPRTPPTPGM- 294
PT A +LAGWM N SVQ V+A I + P + VS+LK PR+PPT +
Sbjct: 241 PTPAPL-TTSLAGWMPNP----SVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLS 295
Query: 295 VDYQNPDHEQLMKRLRPAPSAE----------EVTY--SSSRHQTWSLDDLPRTVAVSLH 342
+DYQ D E ++KR RP ++ VTY S H T+S DDLP+ V+ L
Sbjct: 296 MDYQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILS 355
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402
QGS + SMDFHP QT+LLVG++ G+I +WE+ R++LVS+ FK+WD+A C++ QAS+
Sbjct: 356 QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415
Query: 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP 462
+ +V+RV WSPDG +GVA++KH++ +YSY G DLR H +IDAH G VNDLAF+ P
Sbjct: 416 SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475
Query: 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521
N+ LCVVTCG+DK IKVW+ ++G KL FEGHEAPVYS+CPH KENIQFIFSTA+DGKIK
Sbjct: 476 NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535
Query: 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581
AWLYD MGSRVDYDAPG CT+M Y ADG+RLFSCGTSK+G+SF+VEWNESEG +KRTY
Sbjct: 536 AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595
Query: 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641
G K+S GVVQFDT +N FL G++ Q+KFWDMD+V++L+ST AEGGLP+ P LR +KEG
Sbjct: 596 GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655
Query: 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK--VSASSAVSSGTPA 699
LLAV+T DNG KILANA G R L ++ N ++ R P SVA V +S T
Sbjct: 656 TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715
Query: 700 NCKV-ERSSPVRPSPIINGVDPTSRSMD--KPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756
+ + ERS PV + G++ +RS+ KPR DD +K K W+L EI + Q R +
Sbjct: 716 SLSMGERSGPVAS---VTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLR 771
Query: 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816
+P+ T ++VV+L+YTNS +LAL N KLWKW ++E+N GKA ++ PQ W PS
Sbjct: 772 LPD-TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPS 830
Query: 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST 876
SG+LM ND N E+ VPC ALSKNDSYVMSA+GGKISLFNMMTFK MTTFM+PPPA+T
Sbjct: 831 SGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 890
Query: 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936
LAFHPQDNNIIAIG +DS+I IYNVRVDEVKSKLKGHQKR+TGLAFS LN+LVSSGAD
Sbjct: 891 SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGAD 950
Query: 937 AQLCVWSIDTWEKRKSVTIHIPAGKTPT--GDTRVQFNADQVRMLVVHETQLAIYDASKM 994
+QLCVWS+D WEK+ S I IP+G +P TRVQF+ DQ+ +LVVH +QLAIY+A K+
Sbjct: 951 SQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKL 1010
Query: 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1051
E ++QW P+++ S ++ AVYSC+SQ ++A F DG++ + A TL+L+C I P++YL
Sbjct: 1011 ENMKQWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYL 1066
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/471 (24%), Positives = 179/471 (38%), Gaps = 71/471 (15%)
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM----------------------RDRL 380
GS+V+S+ F Q + GS + I +W+ A R+R+
Sbjct: 840 HGSSVLSVAFSADGQRVA-SGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERV 898
Query: 381 VS----KPFKIWDMAA--CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434
S K KIWD A+ C+ + + V VA+SPDG V H I+++
Sbjct: 899 ASGSDDKTIKIWDAASGTCTQTLEGHGGR-----VQSVAFSPDGQRVASGSDDHTIKIWD 953
Query: 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGH 493
A S Q ++ H +V +AF+ + V + DK IK+W+ SG EGH
Sbjct: 954 -AASGTCTQ--TLEGHGSSVLSVAFSPDGQR--VASGSGDKTIKIWDTASGTCTQTLEGH 1008
Query: 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGS 551
V+S+ + Q + S + D IK W DT GH W ++++S DG
Sbjct: 1009 GGSVWSVA--FSPDGQRVASGSDDKTIKIW--DTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
R+ S D + W+ GT +T G S V F + D IK
Sbjct: 1065 RV----ASGSDDHTIKIWDAVSGTCTQTLEG-HGDSVWSVAFSPDGQRVASGSIDGTIKI 1119
Query: 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671
WD + + + GG + + FS +G +A + D KI A G
Sbjct: 1120 WDAASGTCTQTLEGHGGW--VHSVAFSPDGQRVASGSIDGTIKIWDAASG------TCTQ 1171
Query: 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING----VDPTSRSMDK 727
E ++SVA S + K+ ++ + + G V + S D
Sbjct: 1172 TLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDG 1231
Query: 728 PRTVDDVTDKP-KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
R +D K W A SG C T + +++ + YTN+ +
Sbjct: 1232 QRVASGSSDNTIKIWDTA----SGTC---TQTLNVGSTATCLSFDYTNAYI 1275
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 134/641 (20%), Positives = 259/641 (40%), Gaps = 83/641 (12%)
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKD 404
+V+++ F P + L G S G + WE A ++ L K W
Sbjct: 866 SVLTVAFSPDGK-LFATGDSGGIVRFWEAATGKELLTCKGHNSW---------------- 908
Query: 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK 464
V+ V +S DG + ++L+ + L+ H V + F+ PN
Sbjct: 909 ----VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT---FKGHTSRVRSVVFS-PNS 960
Query: 465 LLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
L+ + + D+ +++W++S G L+ F+GH VYS+ + ++ + + + D ++ W
Sbjct: 961 LM-LASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW 1017
Query: 524 LYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581
D S+ Y GH ++++S+DG+ L S D + W+ S G T
Sbjct: 1018 --DISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641
G VV F + G+D ++ WD+ + N L + +G + L FS G
Sbjct: 1072 GHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTL--QGYTSWVRFLVFSPNG 1128
Query: 642 NLLAVTTADNGFKI--LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699
LA ++D ++ +++ L +L+ N + +VA ++ S
Sbjct: 1129 VTLANGSSDQIVRLWDISSKKCLYTLQGHTNW--------VNAVAFSPDGATLASGSGDQ 1180
Query: 700 NCKVERSSPVRPSPIING----VDPTSRSMDKPRTVDDVTDKP-KPWQLAEIVDSGQCRL 754
++ S + I+ G V+ + D +D+ + W+ ++S +C L
Sbjct: 1181 TVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWE----INSSKC-L 1235
Query: 755 VTMPESTDTSSKVV-----RLLYTNSA---VGLLALGSNGVQKLWKWHRN-----EQNPS 801
T T + VV +L + S+ V L + S+ ++ H N NP
Sbjct: 1236 CTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPD 1295
Query: 802 GKATASAVPQH----WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK-ISL 856
G AS W SS + + V + S + + + S + + + L
Sbjct: 1296 GSMLASGSGDQTVRLWEISSSKCLHTFQGHTSW---VSSVTFSPDGTMLASGSDDQTVRL 1352
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 916
+++ + + + TF+ + F P D I+A G+ D T+ ++++ + L+GH
Sbjct: 1353 WSISSGECLYTFLGHTNWVGSVIFSP-DGAILASGSGDQTVRLWSISSGKCLYTLQGHNN 1411
Query: 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
+ + FS +L S D + +W+I + E ++ HI
Sbjct: 1412 WVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHI 1452
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S + +SPDG Y+G I+++ D + H +N+ +++ +KL
Sbjct: 109 SISGIKFSPDGRYMGSGSADCSIKIWRM----DFVYEKTLMGHRLGINEFSWSSDSKL-- 162
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+V+C DDKL+KV+++ SGR + +GH V+ C + I S + D I+ W
Sbjct: 163 IVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCC--FNPSGTLIASGSFDETIRIWC-- 218
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ PGH +++ ++ DG+ L S D + W+ + GT +T
Sbjct: 219 ARNGNTIFSIPGHEDPVSSVCFNRDGAYL----ASGSYDGIVRIWDSTTGTCVKTLIDEE 274
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
V+F + LA ++ +K WD + +L
Sbjct: 275 HPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVL 310
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 132/580 (22%), Positives = 224/580 (38%), Gaps = 79/580 (13%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+V V++SPDG + + I+L+ + L+ I H VN++ F+ K L
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKT---ITGHEQTVNNVYFSPDGKNLA 1171
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW--- 523
+ D IK+W+ SG+ L GH A V ++ + Q I + + D +K W
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITV--RFSPDGQTIAAGSEDKTVKLWHRQ 1227
Query: 524 ---LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
L T+ D W ++ +S DG L S D + W ++G + +T
Sbjct: 1228 DGKLLKTLNGHQD------WVNSLSFSPDGKTL----ASASADKTIKLWRIADGKLVKTL 1277
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
G S V F + + D+ IK W+ + + T T GG+ + F +
Sbjct: 1278 KG-HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVY---AVNFLPD 1333
Query: 641 GNLLAVTTADNGFKILANAIGLRSLRAVENP---PFEAL--RTPIESVALKVSASSAVSS 695
N++A + DN ++R + P P E L + + +V+ S ++
Sbjct: 1334 SNIIASASLDN------------TIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSIIATA 1381
Query: 696 GTPANCKVERS---SPVRPSP---IINGVDPT-------SRSMDKPRTVDDVTDKPKPWQ 742
G N ++ S S ++ P I G+ T S + DK + V D
Sbjct: 1382 GADGNIQLWHSQDGSLLKTLPGNKAIYGISFTPQGDLIASANADKTVKIWRVRDGKALKT 1441
Query: 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ---- 798
L I + V T + R ++ V L + +K K H +E
Sbjct: 1442 L--IGHDNEVNKVNFSPDGKTLASASR----DNTVKLWNVSDGKFKKTLKGHTDEVFWVS 1495
Query: 799 -NPSGKATASAVPQH----WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853
+P GK ASA W SG L+ + A +L V + + + S + S + K
Sbjct: 1496 FSPDGKIIASASADKTIRLWDSFSGNLIKSLPAHNDL---VYSVNFNPDGSMLASTSADK 1552
Query: 854 -ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912
+ L+ ++ TF +F P D IA +ED T+ I+ + + + L
Sbjct: 1553 TVKLWRSHDGHLLHTFSGHSNVVYSSSFSP-DGRYIASASEDKTVKIWQID-GHLLTTLP 1610
Query: 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952
HQ + FS L+S D +W D+ + + S
Sbjct: 1611 QHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFDSQQAKTS 1650
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ ++LL
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 468 VVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVWELS G+ L +GH Y C + I S + D ++ W D
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 184
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 185 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 240
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWD 269
|
Essential for viability. Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1058 | ||||||
| 255542820 | 1132 | WD-repeat protein, putative [Ricinus com | 1.0 | 0.934 | 0.860 | 0.0 | |
| 224123676 | 1133 | predicted protein [Populus trichocarpa] | 0.991 | 0.925 | 0.836 | 0.0 | |
| 449454049 | 1127 | PREDICTED: topless-related protein 3-lik | 0.994 | 0.933 | 0.843 | 0.0 | |
| 357511795 | 1129 | hypothetical protein MTR_7g112460 [Medic | 0.998 | 0.935 | 0.845 | 0.0 | |
| 87162556 | 1128 | Lissencephaly type-1-like homology motif | 0.997 | 0.935 | 0.827 | 0.0 | |
| 356576819 | 1131 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.935 | 0.824 | 0.0 | |
| 224125092 | 1124 | predicted protein [Populus trichocarpa] | 0.991 | 0.933 | 0.847 | 0.0 | |
| 356535043 | 1130 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.936 | 0.828 | 0.0 | |
| 357441817 | 1140 | WD repeat-containing protein [Medicago t | 0.997 | 0.925 | 0.818 | 0.0 | |
| 356505795 | 1131 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.931 | 0.842 | 0.0 |
| >gi|255542820|ref|XP_002512473.1| WD-repeat protein, putative [Ricinus communis] gi|223548434|gb|EEF49925.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1875 bits (4858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/1061 (86%), Positives = 981/1061 (92%), Gaps = 3/1061 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKF ESVHKLEK+SGF+FNMKYFEEKVQAG+W+EVE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFMESVHKLEKDSGFYFNMKYFEEKVQAGEWEEVENYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD QDKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
LSNFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LSNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLGFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTCSPPNGPLAP PVNLPVAAVAKP++Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLAPAPVNLPVAAVAKPSAYPSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
TAAAANA ALAGWMANASASSSVQAAVVTASS+PVPQNQVSVLK PRTPPT PGMVDYQN
Sbjct: 241 TAAAANAGALAGWMANASASSSVQAAVVTASSMPVPQNQVSVLKRPRTPPTAPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHEQLMKRLRPA S +EVTY +SR Q +WSLDDLPRTVA+++HQGS V SMDFHPSHQT
Sbjct: 301 PDHEQLMKRLRPAQSVDEVTYPTSRQQASWSLDDLPRTVALTMHQGSAVTSMDFHPSHQT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL R+RLVSKPFKIW++ +CSL FQAS KD P+SV+RV WSPDG
Sbjct: 361 LLLVGSANGEVTLWELVQRERLVSKPFKIWEITSCSLQFQASFVKDAPVSVNRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+ VG AF KHLI LY+Y GS+DLRQ +IDAH G VNDLAFA+PNK LCVVTCGDDKLIK
Sbjct: 421 SLVGAAFNKHLIHLYAYTGSSDLRQQLEIDAHAGGVNDLAFAHPNKQLCVVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 481 VWDLGGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNVGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN-GVVQFDTTQ 597
HWCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG IKR YAGFRKKS GVVQFDTTQ
Sbjct: 541 HWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGAIKRHYAGFRKKSTAGVVQFDTTQ 600
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
NHFLA GED QIKFWDMDN N+LTS DA+GGLP+LPRLRF+KEGNLLAVTTADNGFKI+A
Sbjct: 601 NHFLAAGEDGQIKFWDMDNTNVLTSIDADGGLPSLPRLRFNKEGNLLAVTTADNGFKIIA 660
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
NA GLR+LRAVE P FEALR+PIES A+KVS +S V++ +P N KVERSSPVRPSPI+NG
Sbjct: 661 NAAGLRALRAVETPGFEALRSPIESAAIKVSGASGVANISPVNLKVERSSPVRPSPILNG 720
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
VDP SRSM+K RTVDDV DK KPWQLAEIV+ +CRLVT+P+STD+SSKVVRLLYTNS V
Sbjct: 721 VDPMSRSMEKLRTVDDVIDKTKPWQLAEIVEPDECRLVTLPDSTDSSSKVVRLLYTNSGV 780
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
G+LALGSNG+QKLWKW R++QNPSGKATA AVPQHW P+SGLLMANDV+GVNLEEAVPCI
Sbjct: 781 GILALGSNGIQKLWKWARSDQNPSGKATAGAVPQHWQPNSGLLMANDVSGVNLEEAVPCI 840
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 841 ALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 900
Query: 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
HIYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADAQLCVWSIDTWEKRKS TI I
Sbjct: 901 HIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSFTIQI 960
Query: 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017
PAGK PTG TRVQF++DQ R+LVVHETQLAIYDASKM+RIRQW PQDA+SAPIS A YSC
Sbjct: 961 PAGKAPTGVTRVQFHSDQTRLLVVHETQLAIYDASKMDRIRQWVPQDAMSAPISYAAYSC 1020
Query: 1018 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1058
NSQL+FA+F DGNIGVFDAD+LRLRC IAPS YLSP+VLNG
Sbjct: 1021 NSQLIFASFRDGNIGVFDADSLRLRCRIAPSAYLSPAVLNG 1061
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123676|ref|XP_002330180.1| predicted protein [Populus trichocarpa] gi|222871636|gb|EEF08767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1857 bits (4811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 888/1061 (83%), Positives = 960/1061 (90%), Gaps = 12/1061 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGF+FNMKYFEEKV AG+WDEVEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAK V+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKGVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IML+ELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS-YASLGTHSPFP 239
WQHQLCKNPR NPDIKTLFTDHTCSP NGPLA PVNLPVAA A + Y LG H PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPMNGPLAAAPVNLPVAAAAAKPAAYTPLGAHGPFP 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDYQ 298
T AAAN +ALA WMAN SASSSVQAAVVTASSIP+PQNQV VLK PRTPPT G+VDYQ
Sbjct: 241 ATGAAANTSALASWMANTSASSSVQAAVVTASSIPIPQNQVPVLKRPRTPPTALGIVDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSR-HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
NPDHE L+KRLRPA S EEVTY +SR H +WSL+ LPRTVA SLH GS V+SMDFHPSH
Sbjct: 301 NPDHE-LIKRLRPAQSVEEVTYPASRQHASWSLEYLPRTVAFSLHPGSAVMSMDFHPSHH 359
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS NGEITLWEL R+RL SKPFKIWDM+ACSL FQAS FKD ISV+RVAWSPD
Sbjct: 360 TLLLVGSVNGEITLWELISRERLFSKPFKIWDMSACSLQFQASGFKDASISVTRVAWSPD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN+VG AF KHLI LY+Y G NDLRQH +IDAHVG VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GNFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 K--------VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529
K VW+L+GRKLFNF GHEAPVY+ICPHHKENIQFIFSTAIDGKIKAWLYD MG
Sbjct: 480 KAIYIMLKQVWDLTGRKLFNFGGHEAPVYNICPHHKENIQFIFSTAIDGKIKAWLYDNMG 539
Query: 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589
SRVDYDAPG WCTTMLYS DGSRLFSCGTSKDG+S+LVEWNESEG+IKR++ GFRKKS G
Sbjct: 540 SRVDYDAPGRWCTTMLYSTDGSRLFSCGTSKDGESYLVEWNESEGSIKRSFVGFRKKSAG 599
Query: 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649
VVQFDTTQNHFLA G+D QIKFWDM+N N+LTSTDA+GGL LPRLRF++EGNLLAV+TA
Sbjct: 600 VVQFDTTQNHFLAAGDDGQIKFWDMENTNVLTSTDADGGLQTLPRLRFNREGNLLAVSTA 659
Query: 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709
DNGFKILANA GLRSLRAVE FEALR+P+ES A+KVS +S++++ +P NCKVER+SPV
Sbjct: 660 DNGFKILANAAGLRSLRAVETQSFEALRSPMESAAIKVSGASSIANASPVNCKVERNSPV 719
Query: 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769
RPSPI+NGVDP +RSM+KPRTVDDV DK KPWQLAEI D +CRLVT+PES DTSSKVVR
Sbjct: 720 RPSPILNGVDPLNRSMEKPRTVDDVIDKTKPWQLAEIADPSECRLVTLPESADTSSKVVR 779
Query: 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829
LLYTNS VG+LALG+NG+QKLWKW RNEQNPSGKATAS PQHW P+SGLLM NDV+GVN
Sbjct: 780 LLYTNSGVGMLALGANGIQKLWKWPRNEQNPSGKATASVAPQHWQPNSGLLMTNDVSGVN 839
Query: 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
LEEAVPCIALSKNDSYVMSATGGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA
Sbjct: 840 LEEAVPCIALSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 899
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
IG EDSTIHIYNVRVDEVKSKLKGHQKR+TGLAFST+LNILVSSGADAQLC+WSIDTWEK
Sbjct: 900 IGMEDSTIHIYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQLCIWSIDTWEK 959
Query: 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP 1009
RKSV I IPAGK+PTGDTRVQF++DQ R+LV+HETQLAIYDASKMERIRQW PQDA+SAP
Sbjct: 960 RKSVAIQIPAGKSPTGDTRVQFHSDQTRLLVIHETQLAIYDASKMERIRQWVPQDAVSAP 1019
Query: 1010 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1050
IS A YSCNSQL++ATFCDGNIGVFDAD+LRLRC IAPS Y
Sbjct: 1020 ISYAAYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSVY 1060
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454049|ref|XP_004144768.1| PREDICTED: topless-related protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1855 bits (4804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 894/1060 (84%), Positives = 969/1060 (91%), Gaps = 8/1060 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGF+FNMKYFE+KVQAG+W+EVEKYLSG+
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFYFNMKYFEDKVQAGEWEEVEKYLSGY 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR DKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRSDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK AR IMLIELKKLIEANPLFRDKL FP LKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKAARSIMLIELKKLIEANPLFRDKLVFPALKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSPPNGPLAPTPVNLPVA KPA YA LG HSPFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFMDHTCSPPNGPLAPTPVNLPVA---KPAPYAPLGAHSPFPP 237
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
T A ANANALAGWMANASASSSVQAAVVTASSIPVPQNQVS+LKH RTPP+ PGMVDYQN
Sbjct: 238 TGATANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKHARTPPSNPGMVDYQN 297
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
P+H+QLMKRLR A S EEVTY + R Q +WS++DLPRTVA +LHQGSTV SMDFHP+H T
Sbjct: 298 PEHDQLMKRLRSAQSVEEVTYPAPRQQASWSIEDLPRTVAFTLHQGSTVTSMDFHPTHHT 357
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL +R+RL+SKPFK+WD+++ SL FQA+I KD PISVSRV WSPDG
Sbjct: 358 LLLVGSNNGEVTLWELGIRERLISKPFKLWDLSSRSLAFQAAIVKDTPISVSRVTWSPDG 417
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+VGVAFTKHL+ LYSY SN+L Q S+IDAHVG VNDLAFA+PNK LCVVTCG+DKLIK
Sbjct: 418 TFVGVAFTKHLVHLYSYNSSNELNQQSEIDAHVGGVNDLAFAHPNKQLCVVTCGEDKLIK 477
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++ GRKLF FEGHEA VYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAPG
Sbjct: 478 VWDIGGRKLFTFEGHEASVYSICPHHKENIQFIFSTALDGKIKAWLYDHMGSRVDYDAPG 537
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCTTMLYSADGSRLFSCGTSKDGDS+LVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 538 KWCTTMLYSADGSRLFSCGTSKDGDSYLVEWNESEGAIKRTYLGFRKKSTGVVQFDTTQN 597
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGEDSQIKFWDMDNVNILT TDAEGGLP+LPRLRF+KEGNLLAVTT DNGFKILAN
Sbjct: 598 HFLAVGEDSQIKFWDMDNVNILTYTDAEGGLPSLPRLRFNKEGNLLAVTT-DNGFKILAN 656
Query: 659 AIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
A+G+RSL+A+E+ PFEALR+P+ES ALKVS SAV+S +P NCKVERSSPVRP IING
Sbjct: 657 AVGMRSLKAIESTTPFEALRSPMES-ALKVSGPSAVASVSPVNCKVERSSPVRPPSIING 715
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
V+ R++DK RTV+D DK KPWQLAEIVD CRLVTMP++ D+S KVVRLLYTNS V
Sbjct: 716 VEGLGRNLDKARTVEDAIDKAKPWQLAEIVDPASCRLVTMPDNADSSHKVVRLLYTNSGV 775
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
GLLALGSNG+QKLWKW RNEQNPSGKATA+ VPQHW P+SGLLM NDV GVNLEEAVPCI
Sbjct: 776 GLLALGSNGIQKLWKWTRNEQNPSGKATANVVPQHWQPNSGLLMTNDVLGVNLEEAVPCI 835
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA+GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 836 ALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTI 895
Query: 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLC+WSIDTWEKRKS+TI +
Sbjct: 896 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCLWSIDTWEKRKSITIQL 955
Query: 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017
PAGK P GDTRVQF++DQ+R+LVVHETQ+AIYDASKM+RIRQW PQDAL APIS A YSC
Sbjct: 956 PAGKAPVGDTRVQFHSDQIRLLVVHETQIAIYDASKMDRIRQWVPQDALPAPISYAAYSC 1015
Query: 1018 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057
NSQLV+ATFCDGN+GVFDADTLRLRC IAPS YL +VLN
Sbjct: 1016 NSQLVYATFCDGNVGVFDADTLRLRCRIAPSVYLPSAVLN 1055
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511795|ref|XP_003626186.1| hypothetical protein MTR_7g112460 [Medicago truncatula] gi|355501201|gb|AES82404.1| hypothetical protein MTR_7g112460 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1842 bits (4771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 897/1061 (84%), Positives = 966/1061 (91%), Gaps = 5/1061 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTARGIML+ELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGT--HSPF 238
WQHQLCKNPR NPDIKTLF DH+C+P NGPLAPTPVNLPVAAVAKPA+Y SLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPAAYTSLGVGAHGPF 240
Query: 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDY 297
PP AA ANANALAGWMANAS SSSVQAAVVTAS+IPVP NQVS+LK P TP T PGMV+Y
Sbjct: 241 PPAAATANANALAGWMANASVSSSVQAAVVTASTIPVPHNQVSILKRPITPSTTPGMVEY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLRPAPS EEV+Y S+R +WSLDDLPRTVA+SLHQGS+V SMDFHPSHQ
Sbjct: 301 QSADHEQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQ 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS+NGEI+LWEL MR+RLVSKPFKIWD++ACSLPFQA++ KD P SVSRV WS D
Sbjct: 361 TLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTP-SVSRVTWSLD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
G++VGVAFTKHLI +Y+Y GSN+L Q +IDAH+G VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+L+GR+LFNFEGHEAPVYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAP
Sbjct: 480 KVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
GHWCTTMLYSADG+RLFSCGTSKDGDSFLVEWNESEG IKRTY GFRKKS GVVQFDTTQ
Sbjct: 540 GHWCTTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQ 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLA GEDSQIKFWDMDNVN LTST+AEGGL LP LRF+KEGNLLAVTTADNGFKILA
Sbjct: 600 NRFLAAGEDSQIKFWDMDNVNPLTSTEAEGGLQGLPHLRFNKEGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
NA GLRSLR VE P FEALR+PIES A KVS SSAV+ +P +CKVERSSP RPS I+NG
Sbjct: 660 NAGGLRSLRTVETPAFEALRSPIESAANKVSGSSAVNV-SPVSCKVERSSPARPSQILNG 718
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
VDP R+ +KPRTV+DV D+ K WQL EIVD CRLVTMP+STDTSSKVVRLLYTNS
Sbjct: 719 VDPAGRNAEKPRTVEDVMDRTKSWQLFEIVDPAHCRLVTMPDSTDTSSKVVRLLYTNSGA 778
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
GLLALGSNGVQKLWKW RN+QNPSGKATAS VPQHW P+SGLLM NDV+GVNLEEAVPCI
Sbjct: 779 GLLALGSNGVQKLWKWSRNDQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLEEAVPCI 838
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM+PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 839 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMAPPPASTFLAFHPQDNNIIAIGMEDSTI 898
Query: 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
HIYNVRVDEVKSKLKGHQKRI+GLAFST+L ILVSSGADA LCVWSIDTWEKRKSV I +
Sbjct: 899 HIYNVRVDEVKSKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDTWEKRKSVPIQL 958
Query: 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017
P GK P G+TRVQF++DQ+R+LV HETQLAIYDASKMERIRQW PQD LSAPIS A YSC
Sbjct: 959 PVGKAPVGETRVQFHSDQLRLLVSHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSC 1018
Query: 1018 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1058
NSQL+FATFCDGN GVFDAD+LRLRC IAPSTY + + L+G
Sbjct: 1019 NSQLIFATFCDGNTGVFDADSLRLRCRIAPSTYFTATTLSG 1059
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87162556|gb|ABD28351.1| Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1842 bits (4770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 876/1058 (82%), Positives = 963/1058 (91%), Gaps = 3/1058 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVAYTSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRTPP TPG+VDYQN
Sbjct: 241 NVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V S+DFHPSH TL
Sbjct: 301 TDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSLDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDGN
Sbjct: 361 LLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKSNGVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSNGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVTT DNGFKI+ANA
Sbjct: 601 FLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKIMANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSSPVRP PI+NGVD
Sbjct: 661 TGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSSPVRPPPILNGVD 719
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
P SRS++K R V+D TD+ K WQL EI+D QCR VTMP++TD+ SKVVRLLYTNSAVG+
Sbjct: 720 PMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKVVRLLYTNSAVGI 778
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AGVNLEEAVPCIAL
Sbjct: 779 LALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIAL 838
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNII+IG EDSTIHI
Sbjct: 839 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHI 898
Query: 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 959
YNVRVDEVKSKLKGHQ+RITGLAFST+LNILVSSGADAQ+CVWSIDTWEKRKS+ I +PA
Sbjct: 899 YNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTWEKRKSIPIQLPA 958
Query: 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 1019
GK+P GDTRVQF++DQ+R+LVVHETQLAIYD SKMERIRQW PQDALSAPIS A YSCNS
Sbjct: 959 GKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALSAPISYAAYSCNS 1018
Query: 1020 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057
QL++A+FCD NIGVFDAD+LRLRC IAP LS + L+
Sbjct: 1019 QLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALS 1056
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576819|ref|XP_003556527.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1840 bits (4766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/1060 (82%), Positives = 965/1060 (91%), Gaps = 2/1060 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLP+AAVAKPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPP 240
Query: 241 TAAAANANALA-GWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQ 298
AAA GWMANASASSSVQAAVVTAS++PVPQNQV +LK PRTPP PGM+DYQ
Sbjct: 241 AAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQVPILKRPRTPPANPGMIDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
N DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH T
Sbjct: 301 NADHEQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLL GS+NGEI+LWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG
Sbjct: 361 LLLAGSNNGEISLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
++VG+AFTKHLI LY+Y G N+L Q ++DAHVG VNDL+FA+PNK +C+VTCGDDKLIK
Sbjct: 421 SFVGIAFTKHLIHLYAYTGPNELTQRIEVDAHVGGVNDLSFAHPNKQMCIVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPG
Sbjct: 481 VWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
HWCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 HWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQN 600
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
FLA GED Q+KFWDMDN+N+L S+DA+GGL +LPRLRF+KEGN+LAVTT DNGFKILAN
Sbjct: 601 RFLAAGEDGQVKFWDMDNINLLISSDADGGLQSLPRLRFNKEGNILAVTTVDNGFKILAN 660
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
A GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+NGV
Sbjct: 661 ASGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGV 720
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP RS +KPRTV+DV D+ KPWQL+EI+D QCR VTMPESTD+SSKVVRLLYTNSAVG
Sbjct: 721 DPMGRSAEKPRTVEDVIDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSAVG 780
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALGSNG+QKLWKW R+EQNP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIA
Sbjct: 781 ILALGSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIA 840
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIH
Sbjct: 841 LSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIH 900
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958
IYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADA LCVWSIDTWEKRKS+ I +P
Sbjct: 901 IYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSIPIQLP 960
Query: 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 1018
AGK+P GDTRVQF++DQ+R+LVVHETQLAIYDASKMERIRQW PQD LSAPIS A YSCN
Sbjct: 961 AGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCN 1020
Query: 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1058
SQL++ATFCD NIGVFDAD+LRLRC IAPS LSP+ L+G
Sbjct: 1021 SQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSG 1060
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125092|ref|XP_002319498.1| predicted protein [Populus trichocarpa] gi|222857874|gb|EEE95421.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 892/1052 (84%), Positives = 965/1052 (91%), Gaps = 3/1052 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGF+FNMKYFEEKV AG+WDEVEKYL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLVGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAV+ILV DLKVF TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFLTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IML+ELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCK+PR+NPDIKTLF DHTCSP NGPLAP PV+LPVAAVAKPA Y SLG H PFP
Sbjct: 181 WQHQLCKHPRSNPDIKTLFIDHTCSPTNGPLAPAPVSLPVAAVAKPAPYTSLGAHGPFPA 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
T AAANA ALAGWMANASASSSVQAAVVTASSIP+PQNQVSVLK RTPPT PG+VDYQN
Sbjct: 241 TGAAANAGALAGWMANASASSSVQAAVVTASSIPIPQNQVSVLKRQRTPPTAPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHE LMKRLRPA S EE TY +SR Q +WSL+DLPRTVA +LHQGSTV+SMDFHPSH T
Sbjct: 301 PDHE-LMKRLRPAQSVEEATYPASRQQASWSLEDLPRTVAFALHQGSTVMSMDFHPSHHT 359
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS NGEITLWEL R+RL SKPFKIWD+ CSL FQAS FKD ISV+RVAWSPDG
Sbjct: 360 LLLVGSVNGEITLWELISRERLFSKPFKIWDLQGCSLQFQASGFKDASISVTRVAWSPDG 419
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
N+VG AF KHLI LY+Y G NDLRQH +IDAHVG VNDLAFA+PNK LCVVTCGDDKLIK
Sbjct: 420 NFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLIK 479
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L+GRKLFNFEGHEA VY+ICPHHKENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 480 VWDLTGRKLFNFEGHEAAVYNICPHHKENIQFIFSTAIDGKIKAWLYDNIGSRVDYDAPG 539
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
HWCTTMLYSADGSRLFSCGTSK+GDS+LVEWNESEG++KR++ GFRKKS GVVQFDTTQN
Sbjct: 540 HWCTTMLYSADGSRLFSCGTSKEGDSYLVEWNESEGSVKRSFLGFRKKSAGVVQFDTTQN 599
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLA G+D QIKFWDM+N++ +T+TDA+GGL LPRL+F+KEGNLLAVTTADNGFKILAN
Sbjct: 600 HFLAAGDDGQIKFWDMENISFITTTDADGGLQTLPRLKFNKEGNLLAVTTADNGFKILAN 659
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
A GLRSLRAVE FEALR+P+ES A+KVS +S + + +P N KVERSSPVRPSPI+NGV
Sbjct: 660 AAGLRSLRAVETHSFEALRSPMESAAIKVSGTSNIVNASPVNLKVERSSPVRPSPILNGV 719
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP +RSM+KPRTVDDV DK KPWQLAEIVD G+CRLVT+P+STDTSSKVVRLLYTNS VG
Sbjct: 720 DPMNRSMEKPRTVDDVIDKTKPWQLAEIVDPGECRLVTLPDSTDTSSKVVRLLYTNSGVG 779
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALG+NG+QKLWKW RNEQNPSGKATA+ VPQHW P+SGLLM NDV+GVNLEEAVPCIA
Sbjct: 780 MLALGANGIQKLWKWPRNEQNPSGKATANVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIA 839
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSATGGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG EDSTIH
Sbjct: 840 LSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIH 899
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958
IYNVRVDEVKSKLKGHQKR+TGLAFST+LNILVSSGADAQLC+WSIDTWEKRKSV I IP
Sbjct: 900 IYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQLCIWSIDTWEKRKSVAIQIP 959
Query: 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 1018
GK+PTGDTRVQF++DQ R+LVVHETQLAIYDASKMERI QW PQDA+SAPIS A YSCN
Sbjct: 960 TGKSPTGDTRVQFHSDQTRLLVVHETQLAIYDASKMERIHQWVPQDAISAPISYAAYSCN 1019
Query: 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1050
SQL++ATF DGN+GVFDAD LRLRC IAPS Y
Sbjct: 1020 SQLIYATFSDGNVGVFDADHLRLRCRIAPSAY 1051
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535043|ref|XP_003536058.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1834 bits (4751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1059 (82%), Positives = 968/1059 (91%), Gaps = 1/1059 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTP+NLP+AAVAKPA+Y LG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPINLPIAAVAKPATYTPLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
AA ANANALAGWMANASASSSVQAAVVTAS+IPVPQNQ PRTPP PGMVDYQN
Sbjct: 241 AAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQXXXXXRPRTPPANPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DH+QLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH TL
Sbjct: 301 ADHDQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEITLWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG+
Sbjct: 361 LLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGS 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VG+AFTKHLI LY+ GSN+L Q ++DAHVG VNDLAFA+PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED Q+KFWDMDN+N+L ST+A+GGL +LPRLRF+KEGN+LAVTT DNGFKILANA
Sbjct: 601 FLAAGEDGQVKFWDMDNINLLISTEADGGLQSLPRLRFNKEGNILAVTTMDNGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+NGVD
Sbjct: 661 SGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGVD 720
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
P RS++KPRTV+DVTD+ KPWQL+EI+D QCR VTMPESTD+SSKV+RLLYTNSAVG+
Sbjct: 721 PMGRSVEKPRTVEDVTDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVIRLLYTNSAVGI 780
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNG+QKLWKW R+E NP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIAL
Sbjct: 781 LALGSNGIQKLWKWARSELNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIAL 840
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG +DSTIHI
Sbjct: 841 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMDDSTIHI 900
Query: 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 959
YNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADA LCVWSIDTWEKRK++ I +PA
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKAIPIQLPA 960
Query: 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 1019
GK+P GDTRVQF++DQ+R+LVVHETQLAIYDASKMERIRQW PQD LSAPIS A YSCNS
Sbjct: 961 GKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNS 1020
Query: 1020 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1058
QL++ATFCD NIGVFDAD+LRLRC IAPS LSP+ L+G
Sbjct: 1021 QLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSG 1059
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441817|ref|XP_003591186.1| WD repeat-containing protein [Medicago truncatula] gi|355480234|gb|AES61437.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1833 bits (4748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 876/1070 (81%), Positives = 963/1070 (90%), Gaps = 15/1070 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNF------------RENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKS 168
L+NF RENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKS
Sbjct: 121 LNNFSMPTDLYFISYDRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKS 180
Query: 169 SRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS 228
SRLRTLINQSLNWQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +
Sbjct: 181 SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVA 240
Query: 229 YASLGTHSPFPPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRT 288
Y SLG H PFPP A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRT
Sbjct: 241 YTSLGAHGPFPPNVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRT 300
Query: 289 PP-TPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTV 347
PP TPG+VDYQN DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V
Sbjct: 301 PPATPGIVDYQNTDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSV 360
Query: 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407
S+DFHPSH TLLLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PI
Sbjct: 361 TSLDFHPSHHTLLLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPI 420
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SVSRV WSPDGN+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC
Sbjct: 421 SVSRVTWSPDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLC 480
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
+VTCGDDKLIKVW+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD
Sbjct: 481 IVTCGDDKLIKVWDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDN 540
Query: 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS
Sbjct: 541 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKS 600
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647
NGVVQFDTTQN FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVT
Sbjct: 601 NGVVQFDTTQNRFLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVT 660
Query: 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707
T DNGFKI+ANA GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSS
Sbjct: 661 TVDNGFKIMANATGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSS 719
Query: 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767
PVRP PI+NGVDP SRS++K R V+D TD+ K WQL EI+D QCR VTMP++TD+ SKV
Sbjct: 720 PVRPPPILNGVDPMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKV 778
Query: 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 827
VRLLYTNSAVG+LALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AG
Sbjct: 779 VRLLYTNSAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAG 838
Query: 828 VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
VNLEEAVPCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNI
Sbjct: 839 VNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNI 898
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947
I+IG EDSTIHIYNVRVDEVKSKLKGHQ+RITGLAFST+LNILVSSGADAQ+CVWSIDTW
Sbjct: 899 ISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTW 958
Query: 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALS 1007
EKRKS+ I +PAGK+P GDTRVQF++DQ+R+LVVHETQLAIYD SKMERIRQW PQDALS
Sbjct: 959 EKRKSIPIQLPAGKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALS 1018
Query: 1008 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057
APIS A YSCNSQL++A+FCD NIGVFDAD+LRLRC IAP LS + L+
Sbjct: 1019 APISYAAYSCNSQLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALS 1068
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505795|ref|XP_003521675.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1824 bits (4724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 888/1054 (84%), Positives = 965/1054 (91%), Gaps = 1/1054 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD QDKAKAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLPVAAVAKPA+Y S+G+H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGSHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
AA AN NALAGWMANASASSSVQAAVVTAS+IPVPQNQVS+LK PRTPPT PGM DYQN
Sbjct: 241 AAATANTNALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPRTPPTTPGMADYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRPAPS EEV+Y ++R + SLDDLPRTVA++LHQGS+V SMDFHPSH TL
Sbjct: 301 ADHEQLMKRLRPAPSVEEVSYPAARQASCSLDDLPRTVAMTLHQGSSVTSMDFHPSHPTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEI+LWEL RDRLVSKPFKIWD++ACSLPFQA++ KD PIS SRV WS DGN
Sbjct: 361 LLVGSNNGEISLWELGFRDRLVSKPFKIWDISACSLPFQAAMVKDSPISASRVTWSLDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAH+G VNDLAFA+ NK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHLNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+++GRKLFNFEGHEA VYSICPHHKE+IQF+FSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDIAGRKLFNFEGHEAAVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED QIKFWDMDN+N+LTSTDAEGGL LP LRF+KEGNLLAVTTAD GFKILANA
Sbjct: 601 FLAAGEDGQIKFWDMDNINLLTSTDAEGGLQTLPHLRFNKEGNLLAVTTADKGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR VE P FEALR+PIES A+KV++ S+ + +P NCKVE+SSPV PSPI+NGVD
Sbjct: 661 NGLRSLRTVETPGFEALRSPIESAAVKVASGSSAVNVSPVNCKVEKSSPVGPSPILNGVD 720
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
T ++ +KPRTV+D D+ KPWQL+EIVD+ QCRLVTMP+STD+SSKVVRLLYTNS G+
Sbjct: 721 TTGQNAEKPRTVEDGVDRAKPWQLSEIVDAVQCRLVTMPDSTDSSSKVVRLLYTNSGAGV 780
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNGVQKLWKW R+EQNP+GKATAS VPQHW P+SGLLM NDVAGVNL+EAVPCIAL
Sbjct: 781 LALGSNGVQKLWKWARSEQNPNGKATASVVPQHWQPNSGLLMTNDVAGVNLDEAVPCIAL 840
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIHI
Sbjct: 841 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHI 900
Query: 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 959
YNVRVDEVKSKLKGHQKRITGLAFST LNILVSSGADAQLCVWSIDTWEKRKSV I +PA
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPA 960
Query: 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 1019
GK P GDTRVQF+ DQ+R+LV HETQLAIYDASKM+RIRQW PQD L+APIS A YSCNS
Sbjct: 961 GKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNS 1020
Query: 1020 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1053
QL++ATFCDGN GVFDAD+LRLRC IA STY SP
Sbjct: 1021 QLIYATFCDGNTGVFDADSLRLRCRIALSTYFSP 1054
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1058 | ||||||
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.987 | 0.923 | 0.726 | 0.0 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.984 | 0.921 | 0.622 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.975 | 0.921 | 0.626 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.321 | 0.459 | 0.324 | 2.7e-69 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.255 | 0.467 | 0.244 | 3.1e-16 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.186 | 0.312 | 0.256 | 5.2e-15 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.252 | 0.195 | 0.263 | 8.4e-11 | |
| MGI|MGI:1916794 | 328 | Wdr5b "WD repeat domain 5B" [M | 0.184 | 0.594 | 0.256 | 5.7e-14 | |
| POMBASE|SPAC343.04c | 507 | SPAC343.04c "WD repeat protein | 0.120 | 0.252 | 0.294 | 1.1e-12 | |
| WB|WBGene00006474 | 376 | wdr-5.1 [Caenorhabditis elegan | 0.181 | 0.510 | 0.257 | 1.4e-12 |
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3988 (1408.9 bits), Expect = 0., P = 0.
Identities = 768/1057 (72%), Positives = 868/1057 (82%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IPVPQNQVSVLKHPRTPPTP-GMVDY 297
P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + I+ +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSI---SPAIGKIEHMDAGSPARPTPI 716
Query: 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774
NG++ SR+M+KPR +D V DK KP +L EIVD QCR VTMP+S D+ SKV RLLYTN
Sbjct: 717 PNGIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTN 775
Query: 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834
S VG+LALGSNGVQ+LWKW RNEQNP+GKATAS PQHW P+SGLLMANDV N E +V
Sbjct: 776 SGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSV 834
Query: 835 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894
PCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG ED
Sbjct: 835 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 894
Query: 895 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 954
S+IHIYNVRVDEVK+KLKGHQK ITGLAFST+LNILVSSGADAQL W+ D+WEK+KS
Sbjct: 895 SSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSA 954
Query: 955 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAV 1014
I +P GK P GDTRVQF+ DQ+++LV HETQLAIYDASKME I +W PQ+ALS+PI+ A
Sbjct: 955 IQLPPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSAS 1014
Query: 1015 YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1051
YSCNSQLV+A+F DGNI VFDA++LRLRC IAPS Y+
Sbjct: 1015 YSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYM 1051
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3424 (1210.4 bits), Expect = 0., P = 0.
Identities = 670/1077 (62%), Positives = 804/1077 (74%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P+ + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP-VPQNQVSVLKHPRTPPTPGMVDYQ 298
PT P +P + LKHPRTPPT +DY
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIP----AALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH----QTWSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ + G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVE 704
AV+ +N KI+AN+ GLR L EN E+ + I T A +
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAA-----TSAG-HAD 710
Query: 705 RSSPVRPSPIINGVDPTSRSM-D-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
RS+ V I G++ SR+M D KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 711 RSANVVS---IQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLR 767
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+ K+ RL++TNS +LAL SN + LWKW RNE+N +GKATAS PQ W P+SG+LM
Sbjct: 768 VA-KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMT 826
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 827 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 886
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
QDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW
Sbjct: 887 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVW 946
Query: 943 SIDTWEKRKSVTIHIPAGK--TPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000
+ D WEK++S + +P G+ + DTRVQF+ DQ LVVHETQLAIY+ +K+E ++QW
Sbjct: 947 NTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQW 1006
Query: 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057
+++L API+ A +SC+SQLV+A+F D + VF + LRLRC + PS YL S+ N
Sbjct: 1007 AVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSN 1062
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3413 (1206.5 bits), Expect = 0., P = 0.
Identities = 674/1076 (62%), Positives = 806/1076 (74%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PN AP+PVN P+ ++ K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPVPQNQVSVLKHPRTPPTPGMVDYQN 299
PT P Q + LKHPRTPP+ VDY +
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQ---AALKHPRTPPSNSAVDYPS 297
Query: 300 PDHEQLMKRLRPAPSAEEV---------TYSSSRH---QTWSL-DDLPRTVAVSLHQGST 346
D + + KR RP ++EV T+ H QT+ DDLP+TVA +L QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
+SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND+AF+ PNK L
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 467 CVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
CV TCGDDK IKVW+ + G K + FEGHEAPVYSICPH+KENIQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585
D MGSRVDY+APG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645
+S GVVQFDTT+N +LA G+D IKFWDMD + +LT+ DA+GGL PR+RF+KEG+LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVER 705
V+ DN K++AN+ GLR L VEN E+ + I P VER
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSI--------------PM---VER 700
Query: 706 SSPVRPSPIINGVDPTSRSM-D-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763
+ V P +NG D SR+M D KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 701 PASVVSIPGMNG-D--SRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRV 757
Query: 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823
+ K+ RL++TNS +LAL SN + LWKW RN++N +GKATAS PQ W P+SG+LM N
Sbjct: 758 T-KISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTN 816
Query: 824 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883
DVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHPQ
Sbjct: 817 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 876
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
DNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW+
Sbjct: 877 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWN 936
Query: 944 IDTWEKRKSVTIHIPAGKTPTG--DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWT 1001
D WEK+KS + IP G++ + DTRVQF+ DQV LVVHETQLAIY+ +K+E ++QW
Sbjct: 937 TDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWP 996
Query: 1002 PQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057
+++ +API+ A +SC+SQL++ +F D I VF + LRLRC + PS YL S+ N
Sbjct: 997 VRES-AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSN 1051
|
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| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.7e-69, Sum P(2) = 2.7e-69
Identities = 116/357 (32%), Positives = 191/357 (53%)
Query: 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765
+S + P+++ + T SM K V K KP EI D QC + +P+ +
Sbjct: 336 TSSLENVPVVSYLCGTPSSM-KFFFKKTVPRKKKP---NEIKDPSQCNALVLPDCF-SEE 390
Query: 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825
K+ RL Y+ S +LAL + KLW W + QN K P+ P SG M N++
Sbjct: 391 KIARLTYSPSGDYILALAEDATHKLWTWS-SSQNEFCKENVYPKPRLHQPQSGKTMENEM 449
Query: 826 AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885
A +++++ C A+ SY+ S +GGKI++F++ F+ + +F SP P +T+ F P D
Sbjct: 450 A-TSVQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASFGSPTPMATYFIFIPGD- 505
Query: 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945
++A+G +D +I I+ + +VK KL+GH ++IT LAFS N+LVSS +D +LC+WS
Sbjct: 506 -LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTK 564
Query: 946 TWEK--RKSVTIHI--PAGKTPTG-DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000
+W K K+ T + T T +QF+ Q+ +LVVH+ + +Y+ ++ QW
Sbjct: 565 SWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHDGWIGLYEVRTLDCRLQW 624
Query: 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057
P DA I+ A YS + ++++ F G+I + D+ T C I +++ S N
Sbjct: 625 IP-DASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQINLTSFTQLSTSN 680
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| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 73/299 (24%), Positives = 127/299 (42%)
Query: 370 TLWELAMRDRLVSKPFKIWDMAACSLPF---QASIFKDVPISV--SRVAWSPDGNYVGVA 424
++W L + R S + D+ S F S K P+ V S + +SP + +
Sbjct: 207 SMWRLVLLLRRKSSDSDLLDLVRDSYRFFLQNISAIKCAPLQVYASALVFSPADSLIRKL 266
Query: 425 FTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
F K + D+ H ++ H AV +++++ ++LL + DD+ +K+
Sbjct: 267 FGKE--EPNWIETKPDVANHWSPCLQALEGHEAAVLSVSYSHDSRLLA--SASDDRTVKI 322
Query: 480 WEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
W+ +G EGH V S+ H + ++A D +K W DT + + G
Sbjct: 323 WDTETGSLQHTLEGHSDLVRSVIFSHDSRL---LASASDSTVKIW--DTGTGSLQHTLEG 377
Query: 539 H--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596
H W ++++S D S+L + S DS + W+ G+++ T G R V+ F
Sbjct: 378 HRDWVRSVIFSHD-SQLLA---SASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVI-FSHD 432
Query: 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ +DS +K WD L T EG + + FS + LLA + D +I
Sbjct: 433 SQLLASASDDSTVKIWDT-GTGSLQHT-LEGHRDWVRSVIFSHDSRLLASASDDRTVRI 489
|
|
| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 56/218 (25%), Positives = 100/218 (45%)
Query: 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFF---NMKYFEEKVQAGDWDEVEKYLSGFT 61
++E++ LI Q+L + +SV L ESG + + F E V GDW + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVDDNRYSMKIF---FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L ++L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQ-HNITRVHQLSSY 215
Query: 119 LTLSNFRENEQLSKY-GDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQ 177
+ S ++ Q +K+ G +R +++ L+ + + + + RLRTL+ Q
Sbjct: 216 MMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMPPSVMMSPR---------RLRTLLQQ 266
Query: 178 SLNWQHQLCK-NPRA---NPDIKTLFTDHTCSPPNGPL 211
++ Q Q C + A N + +L TDH C+ P+
Sbjct: 267 AVELQSQHCPCHDMAWETNLETVSLLTDHCCTTDGFPM 304
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 76/288 (26%), Positives = 126/288 (43%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
K+W+ L FK + + VA+SPDG ++ + I+L+ A S +L+Q
Sbjct: 985 KLWNSTTGELQ---QTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLWDLATS-ELQQ-- 1038
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504
++ H +V+ +AF+ +K L + D IK+W+ +G EGH V S+
Sbjct: 1039 SLEDHSRSVHAVAFSPDDKQLASSSL--DSTIKLWDSATGELQRTLEGHSQGVRSVT--F 1094
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + + S + DG IK W T + W ++ +S DG +L S G DS
Sbjct: 1095 SPDGKLLASNSYDGTIKLWNPLTGELQQTLTGRSDWVDSVAFSPDGKQLAS-GYY---DS 1150
Query: 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTST 623
+ W+ + G + +T G + VV F + LA G D K WD +L
Sbjct: 1151 TIKLWDSATGELLQTLEGHSDRIQSVV-F-SPDGKLLASGSYDQTAKLWDPATGELLQIF 1208
Query: 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671
EG + + FS +G LLA ++ K+ G L+ + +P
Sbjct: 1209 --EGHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTG-ELLQTLNDP 1253
|
|
| MGI|MGI:1916794 Wdr5b "WD repeat domain 5B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 53/207 (25%), Positives = 94/207 (45%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++S V +SP+G ++ + LI ++ G+ D + H ++D+A++ + L
Sbjct: 41 AISSVKFSPNGEWLASSAADALIIIW---GAYDGNCKKTLYGHSLEISDVAWSSDSSRL- 96
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVW++ SG+ L +GH V+ C + + I S + D +K W
Sbjct: 97 -VSASDDKTLKVWDMRSGKCLKTLKGHSDFVFC-CDFNPPS-NLIVSGSFDESVKIWEVK 153
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A + + ++ +GS + S G S DG + W+ + G RT A
Sbjct: 154 TGKCLKTLSAHSDPISAVNFNCNGSLIVS-G-SYDGLCRI--WDAASGQCLRTLADEGNP 209
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + L D+ +K WD
Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWD 236
|
|
| POMBASE|SPAC343.04c SPAC343.04c "WD repeat protein, human WDR26 family, ubiquitin ligase complex subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 40/136 (29%), Positives = 71/136 (52%)
Query: 7 ELVFLILQFLEEEKFKESVHKLEKESGFFF---NMKYFEEKVQAGDWDEVEKYLSGFTKV 63
E++ L+LQFL + + ES+ LEKE+G ++K ++ V GDW E S ++
Sbjct: 10 EVIHLLLQFLNDYGYDESLKALEKETGLVSETEDVKRLKQAVLQGDWITAEAAFS-IMQL 68
Query: 64 DDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSN 123
D + F ++KQ+ LE +A+ +L N + FN+E + ++ +L +N
Sbjct: 69 RDESKRKEAQFLLQKQRCLELARSGAICEAIYVLQNFES--TDFNKEKERLVSIILESNN 126
Query: 124 FRENEQLSK--YGDTK 137
NE ++K YG+T+
Sbjct: 127 KSNNELITKNGYGNTR 142
|
|
| WB|WBGene00006474 wdr-5.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 54/210 (25%), Positives = 95/210 (45%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S +SP G Y+G + +++++ + + + H VND+A++ ++ C
Sbjct: 89 SISSAKFSPCGKYLGTSSADKTVKIWNM---DHMICERTLTGHKLGVNDIAWSSDSR--C 143
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
VV+ DDK +K++E+ + R +GH Y C + + S + D ++ W
Sbjct: 144 VVSASDDKTLKIFEIVTSRMTKTLKGHNN--YVFCCNFNPQSSLVVSGSFDESVRIWDVK 201
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVE-WNESEGTIKRTYAGF 583
T G + P H + + ++ DGS L + G S DG LV W+ + G +T
Sbjct: 202 T-GMCIK-TLPAHSDPVSAVSFNRDGS-LIASG-SYDG---LVRIWDTANGQCIKTLVDD 254
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA DS +K WD
Sbjct: 255 ENPPVAFVKFSPNGKYILASNLDSTLKLWD 284
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LRZ0 | TPR2_ARATH | No assigned EC number | 0.7483 | 0.9877 | 0.9239 | no | no |
| Q84JM4 | TPR3_ARATH | No assigned EC number | 0.7853 | 0.9810 | 0.9368 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1058 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-31 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 2e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 9e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-31
Identities = 84/320 (26%), Positives = 125/320 (39%), Gaps = 46/320 (14%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V + F P + LL GS +G I K+WD+ L
Sbjct: 8 HTGG-VTCVAFSPDGK-LLATGSGDGTI----------------KVWDLETGELLRT--- 46
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
K V VA S DG Y+ + I+L+ +R + H V+ +AF+
Sbjct: 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG---HTSYVSSVAFS- 102
Query: 462 PNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520
P+ + + + DK IKVW++ +G+ L GH V S+ F+ S++ DG I
Sbjct: 103 PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG--TFVASSSQDGTI 159
Query: 521 KAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
K W D + GH ++ +S DG +L S + DG L W+ S G
Sbjct: 160 KLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKL--WDLSTGKCLG 213
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN---VNILTSTDAEGGLPNLPRL 635
T G N V F + ED I+ WD+ V L+ L
Sbjct: 214 TLRGHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT-----SL 267
Query: 636 RFSKEGNLLAVTTADNGFKI 655
+S +G LA +AD +I
Sbjct: 268 AWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 2e-22
Identities = 61/239 (25%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L+ ++ H S V S+ F P + +L S + I K+
Sbjct: 78 WDLETGECVRTLTGHT-SYVSSVAFSPDGR-ILSSSSRDKTI----------------KV 119
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-- 445
WD+ + + V+ VA+SPDG +V + I+L+ DLR
Sbjct: 120 WDVETGK---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW------DLRTGKCV 170
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPH 503
+ H G VN +AF+ + L + D IK+W+LS K GHE V S+
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSK 560
+ + S + DG I+ W D GH T++ +S DG RL S
Sbjct: 229 PDGYL--LASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 23/270 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ---HSQIDAHVGAVNDLAFAYPNK 464
V+ VA+SPDG + I+++ LR H+ V A D +
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY----- 65
Query: 465 LLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ + DK I++W+L +G + GH + V S+ + + + S++ D IK W
Sbjct: 66 ---LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVW 120
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
D + GH + F +S+DG L W+ G T G
Sbjct: 121 --DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL--WDLRTGKCVATLTGH 176
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643
+ N V F L+ D IK WD+ L + N + FS +G L
Sbjct: 177 TGEVNSV-AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN--SVAFSPDGYL 233
Query: 644 LAVTTADNGFKI--LANAIGLRSLRAVENP 671
LA + D ++ L +++L N
Sbjct: 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.8 bits (221), Expect = 1e-18
Identities = 84/312 (26%), Positives = 134/312 (42%), Gaps = 30/312 (9%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
++ S+ F P + LLL GSS+G I LW+L ++L+ S+
Sbjct: 66 DSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLI-----------------KSLEGL 107
Query: 405 VPISVSRVAW-SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463
SVS++A SPDGN + +A + + + S + ++ H +V LAF P+
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPD 166
Query: 464 KLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522
L D IK+W+L +G+ L GH PV S+ + I S + DG I+
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRL 225
Query: 523 WLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKRTY 580
W T G + GH +S DGS L S D + W+ S ++ RT
Sbjct: 226 WDLST-GKLLRSTLSGHSDSVVSSFSPDGSLLASGS----SDGTIRLWDLRSSSSLLRTL 280
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
+G V F + D ++ WD++ +L+S +G + L FS +
Sbjct: 281 SGHSSSVLS-VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 641 GNLLAVTTADNG 652
G+LL +D+G
Sbjct: 340 GSLLVSGGSDDG 351
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 5e-17
Identities = 55/220 (25%), Positives = 87/220 (39%), Gaps = 26/220 (11%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSI-- 500
+ H G V +AF+ KLL T D IKVW+L G L +GH PV +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLL--ATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGT 558
++ S + D I+ L+D GH + +++ +S DG L S
Sbjct: 60 SADGT----YLASGSSDKTIR--LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS- 112
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVG-EDSQIKFWDMD 615
D + W+ G T G ++ V V F F+A +D IK WD+
Sbjct: 113 ---RDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLR 165
Query: 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + G + + FS +G L +++D K+
Sbjct: 166 TGKCVAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.1 bits (201), Expect = 4e-16
Identities = 81/344 (23%), Positives = 133/344 (38%), Gaps = 35/344 (10%)
Query: 289 PPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGST-- 346
TPG + H + + L +P + + SS T L DL +S G T
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
V S+ F P L+ GSS+G I LW+L+ L S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL------------------RSTLSGHS 242
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
SV ++SPDG+ + + I+L+ S+ L + + H +V +AF+ KLL
Sbjct: 243 DSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--LSGHSSSVLSVAFSPDGKLL 299
Query: 467 CVVTCGDDKLIKVWELSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ D +++W+L KL +GHE PV S+ + + + DG I+ W
Sbjct: 300 --ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLW 356
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
T + ++ +S DG + S T D + W+ S G++ R G
Sbjct: 357 DLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGST----DGTVRLWDLSTGSLLRNLDGH 411
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
+ + F + D+ I+ WD+ S +G
Sbjct: 412 TSRVT-SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 44/213 (20%), Positives = 90/213 (42%), Gaps = 18/213 (8%)
Query: 834 VPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892
V C+A S + + + +G G I ++++ T +++ T +A D +A G+
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 893 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952
D TI ++++ E L GH ++ +AFS IL SS D + VW ++T + +
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT 130
Query: 953 VTIHIPAGKTPTGDTR-VQFNADQVRMLVV---HETQLAIYDASKMERIRQWTPQDALSA 1008
+ H T V F V + + ++D + + T +
Sbjct: 131 LRGH-------TDWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTG 178
Query: 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1041
++ +S + + + ++ DG I ++D T +
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.8 bits (190), Expect = 8e-15
Identities = 74/329 (22%), Positives = 123/329 (37%), Gaps = 38/329 (11%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L + + +V S+ F P + L S +G I LW+L L
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL------- 191
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
S VS +A+SPDG + + I+L+ S S
Sbjct: 192 ------------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL--STGKLLRST 237
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGHEAPVYSICPHH 504
+ H +V +F+ LL + D I++W+L S L GH + V S+
Sbjct: 238 LSGHSDSV-VSSFSPDGSLL--ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDG 562
+ + S + DG ++ W +T GH +++ +S DGS L S G+
Sbjct: 295 DGKL--LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--- 349
Query: 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622
D + W+ G +T + V F + D ++ WD+ ++L +
Sbjct: 350 DGTIRLWDLRTGKPLKTL--EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407
Query: 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADN 651
D + L FS +G LA ++DN
Sbjct: 408 LDGHTSR--VTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
V +A S + ++S++ G I L+++ T K + T +AF P D ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
G+ED TI ++++R E L GH +T LA+S L S AD + +W
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-14
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 34 FFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQD 89
F K E + GDWDE ++LS R S K+ FE+RKQK+LE + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGK 55
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
+ V +A S + ++V S++ G I L+++ T K + T +AF P D +
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLL 193
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
+ D TI ++++ + L+GH+ + +AFS +L S D + VW + T E
Sbjct: 194 SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253
Query: 950 RKSVTIH 956
++++ H
Sbjct: 254 VQTLSGH 260
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
V +A S + + S++ I ++++ T K +TT +AF P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
++D TI ++++R + + L GH + +AFS L+SS +D + +W + T +
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 950 RKSVTIH 956
++ H
Sbjct: 212 LGTLRGH 218
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.1 bits (157), Expect = 9e-11
Identities = 43/217 (19%), Positives = 99/217 (45%), Gaps = 14/217 (6%)
Query: 834 VPCIALSKNDSYVMSATG--GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891
V +A S + ++++ G I L+++ T K++ + +S S +F P D +++A G
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259
Query: 892 TEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
+ D TI ++++R + L GH + +AFS +L S +D + +W ++T +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319
Query: 951 KSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSA 1008
S+T+ G + + F+ D ++ + + ++D + ++
Sbjct: 320 SSLTLKGHEGPV----SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS---- 371
Query: 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045
+ +S + ++V + DG + ++D T L +
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL 408
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.6 bits (148), Expect = 1e-09
Identities = 78/427 (18%), Positives = 151/427 (35%), Gaps = 38/427 (8%)
Query: 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
S G + F L+ D IK WD
Sbjct: 35 SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSI-AFSPDGELLLSGSSDGTIKLWD 93
Query: 614 MDN-VNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVEN 670
+DN ++ S + S +GN LLA ++ D K+ + + +R +E
Sbjct: 94 LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153
Query: 671 PPFEALRTPIESVAL----KVSASSAVSSGTPANCKVERSSPVR----PSPIINGVDPT- 721
+ S+A K+ AS + GT + P+ + ++ + +
Sbjct: 154 HS-----ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208
Query: 722 -------SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE------STDTSSKVV 768
S S D + D++ + S+D + ++
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268
Query: 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 828
L ++S + L+ S+ V + + SG + + + W +G L + +
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV--RLWDLETGKL-LSSLTLK 325
Query: 829 NLEEAVPCIALSKNDSYVMSATG--GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886
E V ++ S + S ++S G I L+++ T K + T + ++F P D
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS-VSFSP-DGR 383
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946
+++ G+ D T+ ++++ + L GH R+T L FS L S +D + +W + T
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
Query: 947 WEKRKSV 953
K S
Sbjct: 444 SLKSVSF 450
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 970
LKGH +T +AFS +L + D + VW ++T E +++ H V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG------PVRDVA 58
Query: 971 FNADQVRMLVVHE-TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1029
+AD + + ++D E +R T ++ +S +S + +++ ++ D
Sbjct: 59 ASADGTYLASGSSDKTIRLWDLETGECVRTLTGH---TSYVSSVAFSPDGRILSSSSRDK 115
Query: 1030 NIGVFDADT 1038
I V+D +T
Sbjct: 116 TIKVWDVET 124
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (145), Expect = 3e-09
Identities = 40/217 (18%), Positives = 89/217 (41%), Gaps = 11/217 (5%)
Query: 840 SKNDSYVMSATGGKISLFNMMT-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
+ S+ G + L+++ T K++ T + T LAF P + + + D TI
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
++++R + S L GH ++ LAFS ++ S +D + +W + T + +S
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL--- 238
Query: 958 PAGKTPTGDTRVQFNADQVRMLVVHET-QLAIYDASKMERIRQWTPQDALSAPISCAVYS 1016
+ F+ D + + ++D + + S+ + +S
Sbjct: 239 ---SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFS 293
Query: 1017 CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1053
+ +L+ + DG + ++D +T +L + + P
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 30/185 (16%)
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT--WSLDDLPRTVAV-SLHQGSTVISMDFHPSH 356
H + + +P V SS W L + VA + H G V S+ F P
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGE-VNSVAFSPD- 188
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
LL SS+G I LW+L+ +L + V+ VA+SP
Sbjct: 189 GEKLLSSSSDGTIKLWDLST------------GKCLGTLRGHEN-------GVNSVAFSP 229
Query: 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
DG + I+++ + H +V LA++ + + D
Sbjct: 230 DGYLLASGSEDGTIRVWD---LRTGECVQTLSGHTNSVTSLAWS--PDGKRLASGSADGT 284
Query: 477 IKVWE 481
I++W+
Sbjct: 285 IRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.8 bits (112), Expect = 2e-05
Identities = 26/130 (20%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMT--FKVMTTFMSPPPASTFLAFHPQDNNI 887
+V +A S + + S + G + L+++ T T + L+F P + +
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947
++ G++D TI ++++R + L+GH + ++FS ++ S D + +W + T
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402
Query: 948 EKRKSVTIHI 957
+++ H
Sbjct: 403 SLLRNLDGHT 412
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
E+ LKGH +T +AFS L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLEEEKFKESVHKLEKESGF 34
EL LIL++L ++E+ L+KESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
++ LKGH +T +AFS N+L S D + VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 9e-05
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 10/82 (12%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVR-----VDEVKSK---LKGHQKRITGLAFS-TSLN 928
L F+P + I+A G+ED TI ++ + V E+K LKGH+K+I+ + ++ +
Sbjct: 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY 139
Query: 929 ILVSSGADAQLCVWSIDTWEKR 950
I+ SSG D+ + +W I+ EKR
Sbjct: 140 IMCSSGFDSFVNIWDIEN-EKR 160
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
+ H G V +AF+ LL + DD ++VW
Sbjct: 7 LKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-------KLKGHQKRITGLAFSTS-LNI 929
+AF+P D + +ED TI + + + + L+GH K++ ++F S +N+
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140
Query: 930 LVSSGADAQLCVWSIDT 946
L S+GAD + VW ++
Sbjct: 141 LASAGADMVVNVWDVER 157
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1058 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.79 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.74 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.69 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.68 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.68 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.68 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.66 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.65 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.65 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.62 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.6 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.58 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.58 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.58 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.57 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.54 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.54 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.53 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.49 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.46 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.45 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.44 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.43 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.43 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.42 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.37 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.36 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.35 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.34 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.33 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.32 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.32 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.32 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.28 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.21 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.21 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.18 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.14 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.08 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.03 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.03 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.98 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.98 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.94 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.94 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.86 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.83 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.82 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.81 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.8 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.78 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.77 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.76 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.74 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.74 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.74 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.73 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.73 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.71 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.68 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.67 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.67 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.66 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.65 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.65 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.63 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.63 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.62 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.6 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.59 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.58 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.55 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.53 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.53 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.52 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.52 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.51 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.5 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.49 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.46 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.43 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.38 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.38 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.36 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.32 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.3 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.3 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.26 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.25 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.25 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.22 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.21 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.17 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.14 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.09 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.08 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.07 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.04 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.04 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.03 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.02 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.0 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.98 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.97 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.97 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.96 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.96 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.96 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.96 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.81 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.77 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.76 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.75 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.72 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.7 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.69 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.68 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.61 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.6 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.58 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.58 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.52 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.47 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.42 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.38 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.33 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.29 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.29 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.28 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.25 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.21 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.2 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.18 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.15 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.15 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.12 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.07 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.99 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.9 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.87 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.85 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.72 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.62 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.61 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.6 | |
| PRK10115 | 686 | protease 2; Provisional | 96.49 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.48 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.43 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.42 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.41 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.37 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.3 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.28 | |
| PRK10115 | 686 | protease 2; Provisional | 96.21 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.17 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.08 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.07 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.05 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.03 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.0 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.95 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.87 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.72 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 95.7 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.69 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.65 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.56 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.46 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.45 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.3 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.29 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.28 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.27 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.22 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.21 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.09 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.98 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.92 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.86 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.74 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.64 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 94.51 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.39 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.39 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.38 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.04 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.98 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.96 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.88 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.76 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.42 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.23 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.18 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.14 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.05 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.04 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.97 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.33 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.18 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.81 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.71 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 91.45 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 91.34 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.26 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.17 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.13 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.12 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 91.02 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 90.88 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 90.83 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.81 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 90.75 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 90.51 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.99 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.91 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.88 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 89.85 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.83 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.69 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.63 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.29 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 89.19 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.17 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.15 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.02 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 88.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 88.89 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.87 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.81 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.77 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.75 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.74 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 88.56 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 87.48 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 87.17 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 86.73 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.52 | |
| PF09862 | 113 | DUF2089: Protein of unknown function (DUF2089); In | 86.44 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 85.95 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 85.34 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 85.3 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 84.9 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 84.72 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.58 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 84.52 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 84.34 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 84.19 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 83.55 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 83.41 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 83.39 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 82.5 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 82.05 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 81.62 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-74 Score=560.18 Aligned_cols=491 Identities=21% Similarity=0.312 Sum_probs=417.9
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcC---HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHhHH
Q 001535 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1058)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1058)
+-|++|++.|+|+++||.+|+.+||.|||+.+. ...|.++|+.|+|++++..+..+...++.. ...+.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~-~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERN-RKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhh-hHHHHHHHHHHHH
Confidence 569999999999999999999999999999886 899999999999999999999886555443 3459999999999
Q ss_pred hHhhhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCCchHHHHHHHHHHHhhcccCccccccc
Q 001535 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKL 161 (1058)
Q Consensus 82 ~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~ 161 (1058)
||++..|...+|+.+||+++.++ .++.+++++|+.-|..++.....+..........|.+|+++|+++|||+.+
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 99999999999999999999999 689999999988776654332222222223567899999999999999998
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhcCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 001535 162 AFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPPT 241 (1058)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 241 (1058)
+|++||++||+||+++|+..|.|||+ .+..|||.||.|.+.+ +|+ .+.+++.+|++
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~q--------------ip~-qt~qil~~htd---- 225 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQ--------------IPS-QTWQILQDHTD---- 225 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCccc--------------CCc-hhhhhHhhCCC----
Confidence 99999999999999999999999994 5568999999999955 776 77788887877
Q ss_pred ccccchhhhhhhhccCCCCCccccccccCCCCCCCCcccccccCCCCCCCCCccccCCCchHhHhhccCCCCCCcceeec
Q 001535 242 AAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYS 321 (1058)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1058)
||||++|
T Consensus 226 ---------EVWfl~F---------------------------------------------------------------- 232 (519)
T KOG0293|consen 226 ---------EVWFLQF---------------------------------------------------------------- 232 (519)
T ss_pred ---------cEEEEEE----------------------------------------------------------------
Confidence 6666666
Q ss_pred CCCCcccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCccccccc
Q 001535 322 SSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401 (1058)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1058)
|++|+ +||++++|.+..||++.....+. ...+
T Consensus 233 -------------------------------S~nGk-yLAsaSkD~Taiiw~v~~d~~~k----------------l~~t 264 (519)
T KOG0293|consen 233 -------------------------------SHNGK-YLASASKDSTAIIWIVVYDVHFK----------------LKKT 264 (519)
T ss_pred -------------------------------cCCCe-eEeeccCCceEEEEEEecCccee----------------eeee
Confidence 88999 59999999999999986544321 1235
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+.+|..+|..+.||||.+||++|+.|..+.+||+.+|+...... .+|...+.+++|.|||. .+++|+.|+++..||
T Consensus 265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWD 340 (519)
T ss_pred eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEec
Confidence 88999999999999999999999999999999999998776432 24668999999999999 799999999999999
Q ss_pred cCCCeeEEeeccc-CCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 482 LSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 482 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
.+|..+..+++-. ..|.++++.+ ||+++++.+.|..|++++..+...+. +.....+|++++.|.|++++++.-
T Consensus 341 lDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL--- 414 (519)
T KOG0293|consen 341 LDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNL--- 414 (519)
T ss_pred CCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEc---
Confidence 9999988887754 4588999855 78999999999999999987655543 344567899999999999998876
Q ss_pred CCCceEEEEeCCCCceeeeeecccCcc-eeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEee
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFRKKS-NGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~-i~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1058)
.+..+++||++..+.++.+.||.... +-.-||.. +..++++|++|+.|+||+..+|+++..+.+|. ..|+||+|+
T Consensus 415 -~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs--~~vNcVswN 491 (519)
T KOG0293|consen 415 -QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS--KTVNCVSWN 491 (519)
T ss_pred -ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc--ceeeEEecC
Confidence 48899999999999999999998743 22234543 55899999999999999999999999998654 589999999
Q ss_pred C-CCCEEEEEECCCcEEEEEccC
Q 001535 639 K-EGNLLAVTTADNGFKILANAI 660 (1058)
Q Consensus 639 ~-~~~~l~~~~~dg~i~iw~~~~ 660 (1058)
| +-.++|++++||+|+||....
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCc
Confidence 9 667899999999999998754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=474.42 Aligned_cols=487 Identities=20% Similarity=0.326 Sum_probs=407.9
Q ss_pred chHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcC----HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHh
Q 001535 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1058)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1058)
-..+|||||.|||+|+.+++++++||+|+++++| ++.|-+.|.+|+||.++..++.+++++ +-+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~------kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD------KKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch------hHHHHHHHH
Confidence 4569999999999999999999999999999998 889999999999999999999997654 377899999
Q ss_pred HHhHhhhcCCHHHHHHHHHh--hcccccccCHHHHHHHHHhhccccccchhhhcccCCchHHHHHHHHHHHhhcccCccc
Q 001535 80 KYLEALDRQDKAKAVDILVN--DLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLF 157 (1058)
Q Consensus 80 ~~~ell~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 157 (1058)
..|||+|.++...|..+||+ .+.-++..+|++|.+|+.||..+++++.+.+.+ .+.+++|..+.+.|...+.-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 99999999999999999987 366778899999999999999999999998764 45677888889888887766
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHHhcCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 001535 158 RDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSP 237 (1058)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1058)
+||+||+.||.||++||..+.. +|++.+++ .
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQGL-----------------------------------LPPGt~iD------L 185 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQGL-----------------------------------LPPGTTID------L 185 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhcCC-----------------------------------CCCCceee------e
Confidence 9999999999999999988643 44334444 3
Q ss_pred CCCCccccchhhhhhhhccCCCCCccccccccCCCCCCCCcccccccCCCCCCCCCccccCCCchHhHhhccCCCCCCcc
Q 001535 238 FPPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEE 317 (1058)
Q Consensus 238 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1058)
||..++ .+ ..
T Consensus 186 FRGkAA-~K----------------------------------------------------~~----------------- 195 (508)
T KOG0275|consen 186 FRGKAA-MK----------------------------------------------------DQ----------------- 195 (508)
T ss_pred ccchhh-hh----------------------------------------------------hh-----------------
Confidence 444220 00 00
Q ss_pred eeecCCCCcccccCCCCcce--EEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCc
Q 001535 318 VTYSSSRHQTWSLDDLPRTV--AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (1058)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (1058)
.-+..|..+ ...++.++.+.|..|||||+ +|++|+.||.|.+||..+|+......+.
T Consensus 196 -----------~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQ--------- 254 (508)
T KOG0275|consen 196 -----------EEERYPTQLARSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQ--------- 254 (508)
T ss_pred -----------HhhhchHHhhhheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhh---------
Confidence 000111112 23356788899999999999 6999999999999999999886542221
Q ss_pred ccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeec-ccccCeEEEEeecCCCeeEEEEEeCC
Q 001535 396 PFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1058)
Q Consensus 396 ~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~~~d 474 (1058)
....+.-+..+|.|+.||.|...||+|+.||.|+||.+.+|.+++. +. +|+..|+|+.|+.|+. .+++++.|
T Consensus 255 --Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD~S--qiLS~sfD 327 (508)
T KOG0275|consen 255 --AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRDNS--QILSASFD 327 (508)
T ss_pred --hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccCcc--hhhccccc
Confidence 1123566889999999999999999999999999999999999985 44 8999999999999999 69999999
Q ss_pred CcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCC--CcEEEEEEccCC-
Q 001535 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADG- 550 (1058)
Q Consensus 475 ~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~i~~i~~s~~~- 550 (1058)
.++++.- .+|+++..++||.+.|+...|.+ ||..+++++.||+|++|+..+.++..++...+ .+|.++..-|.+
T Consensus 328 ~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 328 QTVRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred ceEEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 9999999 99999999999999999999954 78999999999999999999999888776544 378888877754
Q ss_pred CEEEEEeccCCCCceEEEEeCCCCceeeeeeccc--CcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001535 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1058)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 628 (1058)
..++++. ..+.+++.++ .|+.++.+.... ++..-+++.+|.|.++++.++|+.++.+...+|.+...+..+..
T Consensus 406 eh~iVCN----rsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCN----RSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred ceEEEEc----CCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 4666665 3778888886 477888876432 22455578899999999999999999999999999999987755
Q ss_pred CCCCceEEeeCCCCEEEEEECCCcEEEEE
Q 001535 629 LPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1058)
Q Consensus 629 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 657 (1058)
.+..++-+|..+.+|+-+.||.+++|.
T Consensus 481 --dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 --DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-58 Score=482.34 Aligned_cols=575 Identities=18% Similarity=0.250 Sum_probs=476.9
Q ss_pred EEeecCCCeEEEEEeccceEEEEEccCCCc-cccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCC
Q 001535 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDR-LVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1058)
Q Consensus 350 v~~sp~g~~lla~gs~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 428 (1058)
++||++|+ .|+|... ..|.+-|+.+++. +.. .-..-...+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5888654 3688889999876 321 1223567899999999999999999999
Q ss_pred eEEEEEecCCCcceeeeeecc-cccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccC
Q 001535 429 LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE 506 (1058)
Q Consensus 429 ~i~iwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~ 506 (1058)
.+++|++.+++.++ .+.. |+++|.-++|.|.|. .+++|+.|+.+++|| ..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998877 4665 999999999999997 899999999999999 8999999999999999999999988
Q ss_pred CceEEEEEeeCCeEEEEecCCCCc-eEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccC
Q 001535 507 NIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1058)
Q Consensus 507 ~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 585 (1058)
+...|++|..|+++++||++.... ......|...|+++.|++|+..++++++ |..+.+||+.+.+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888899999999999999986554 6677889999999999999999999985 8899999998877777776554
Q ss_pred cceeEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccC
Q 001535 586 KSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1058)
Q Consensus 586 ~~i~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1058)
.+.++.+-++ +.+++++|++|.+++||.++++.......... ..+..+...+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 3556666665 67999999999999999999988776655432 2366666666666777778889999998877
Q ss_pred CccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCc
Q 001535 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (1058)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 740 (1058)
. ...+.+.++... |..+.|- .++...+++++..+.+++
T Consensus 313 l-~i~k~ivG~ndE-----I~Dm~~l------------------------------------G~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDE-----ILDMKFL------------------------------------GPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchh-----heeeeec------------------------------------CCccceEEEEeCCCceEE
Confidence 6 555666555543 3334332 234566788888899999
Q ss_pred ceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCce
Q 001535 741 WQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (1058)
Q Consensus 741 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 820 (1058)
|+..+ ..+. -+++ |...|.++....+|-.|++++.|.++++|.++.+.. ...
T Consensus 351 y~~~~----~~c~--ii~G---H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~ 402 (775)
T KOG0319|consen 351 YTLPT----SYCQ--IIPG---HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSL 402 (775)
T ss_pred EecCC----CceE--EEeC---chhheeeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhh
Confidence 97653 3333 3344 999999999888888999999999999998732211 000
Q ss_pred eeeeccCCCCCCCeeEEEEecCC-CEEEEEe-CCcEEEEECCCceE-----EE----EecCCCCCeeEEEEecCCCcEEE
Q 001535 821 MANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKV-----MT----TFMSPPPASTFLAFHPQDNNIIA 889 (1058)
Q Consensus 821 ~~~~~~~~~~~~~v~~~~~s~dg-~~la~~~-dg~i~vwd~~~~~~-----~~----~~~~~~~~i~~l~~s~~~~~~la 889 (1058)
.. ..+.+|...|.+++++..+ .++++++ |+++++|++...+. .. +...|...|+|++++| +.+++|
T Consensus 403 ~~--a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiA 479 (775)
T KOG0319|consen 403 CV--AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIA 479 (775)
T ss_pred hh--hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEE
Confidence 11 1122399999999998765 5778888 99999999976221 11 2346999999999999 999999
Q ss_pred EEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEE
Q 001535 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 969 (1058)
Q Consensus 890 sg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 969 (1058)
+|+.|++.+||+++.+....++.||+..|.++.|+|..+.|+|+|.|++|+||.++++.|++++..|. ..|..+
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~------~aVlra 553 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT------SAVLRA 553 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc------ceeEee
Confidence 99999999999999999999999999999999999999999999999999999999999988876543 889999
Q ss_pred EEcCCCCEEEE-EECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001535 970 QFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 970 ~~s~d~~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
.|-.+|+.|++ +.||-+++|++++.+|...+..| ...|++++.++.+.+++||+.||.|.+|.=-|
T Consensus 554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999999998 58999999999999999999776 89999999999999999999999999996544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-55 Score=459.08 Aligned_cols=575 Identities=13% Similarity=0.237 Sum_probs=458.6
Q ss_pred ceeecCCCCcccccCCCCcceEEeec---CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeeccccc
Q 001535 317 EVTYSSSRHQTWSLDDLPRTVAVSLH---QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAAC 393 (1058)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 393 (1058)
.+.|..-++.+-.++..+.......+ ..+.|++++.+||+. .|++++..+.+++|++.+|+.+..
T Consensus 32 ~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs----------- 99 (775)
T KOG0319|consen 32 QHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS----------- 99 (775)
T ss_pred CEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh-----------
Confidence 34444444444344433443322222 567899999999998 588899999999999999987754
Q ss_pred CcccccccccC-CCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEe
Q 001535 394 SLPFQASIFKD-VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1058)
Q Consensus 394 ~~~~~~~~~~~-h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~ 472 (1058)
++. |++||.-++|+|.|..||+|+.||.++|||+..+.+.. .|.||.+.|.++.|.|+-....|++|.
T Consensus 100 --------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~ 168 (775)
T KOG0319|consen 100 --------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGA 168 (775)
T ss_pred --------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecC
Confidence 555 99999999999999999999999999999999987665 689999999999999997766789999
Q ss_pred CCCcEEEEe-cCCC-eeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccC-
Q 001535 473 DDKLIKVWE-LSGR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD- 549 (1058)
Q Consensus 473 ~d~~i~iwd-~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~- 549 (1058)
.|+++++|| .++. ++..+..|.+.|++++|.+ |+..+++++.|..+.+||+...+........ ..+-++.+-++
T Consensus 169 ~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~ 245 (775)
T KOG0319|consen 169 TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREE 245 (775)
T ss_pred CCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechh
Confidence 999999999 5444 5888999999999999966 5788999999999999999655554444332 24566666666
Q ss_pred ----CCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEecc
Q 001535 550 ----GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 550 ----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 625 (1058)
|.+++++| +++.+++||.++++++..........+..+...+....++..+.|..+.++|.++.++...+.+
T Consensus 246 ~~~~~~~~~TaG----~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG 321 (775)
T KOG0319|consen 246 LGGKGEYIITAG----GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG 321 (775)
T ss_pred cCCcceEEEEec----CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcC
Confidence 66888888 5999999999999887766554333455566666667788888899999999999998888865
Q ss_pred CCCCCCCceEEe-eCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceee
Q 001535 626 EGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (1058)
Q Consensus 626 ~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 704 (1058)
. ...|.++.| .|+.+++|+++..+.+++++..+... ..+.+|... |.++...
T Consensus 322 ~--ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--~ii~GH~e~-----vlSL~~~------------------ 374 (775)
T KOG0319|consen 322 Y--NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC--QIIPGHTEA-----VLSLDVW------------------ 374 (775)
T ss_pred C--chhheeeeecCCccceEEEEeCCCceEEEecCCCce--EEEeCchhh-----eeeeeec------------------
Confidence 4 336888876 56889999999999999998877522 255555543 3333322
Q ss_pred ccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcc-eEEEee
Q 001535 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALG 783 (1058)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~ 783 (1058)
..|-++++++.|+++++|.++.. ...........+|.+.|.+++++..+. .+++++
T Consensus 375 -------------------~~g~llat~sKD~svilWr~~~~----~~~~~~~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 375 -------------------SSGDLLATGSKDKSVILWRLNNN----CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred -------------------ccCcEEEEecCCceEEEEEecCC----cchhhhhhhhcccccccceeeecccCccEEEEec
Confidence 23446799999999999998422 222222223356999999999987664 678888
Q ss_pred ccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCc
Q 001535 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF 862 (1058)
Q Consensus 784 ~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~ 862 (1058)
.|+++++|++........ ............|...|++++++|+.+++|+|+ |.+.++|+++.+
T Consensus 432 ~D~tlK~W~l~~s~~~~~----------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAF----------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred CCceEEEecCCCcccccc----------------cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 899999999875211000 000100112223999999999999999999999 999999999999
Q ss_pred eEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 001535 863 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942 (1058)
Q Consensus 863 ~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iw 942 (1058)
....++.+|...|.|+.|+| ..+.+|++|.|++|+||.+.+..|++++.||...|..+.|-.+|+.|+|++.||.|++|
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred eEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 99999999999999999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCC
Q 001535 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKM 994 (1058)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~ 994 (1058)
++++++|+.++..|. +.|-+++-+|.+.++++| .|+.|.+|.-.+.
T Consensus 575 nikt~eC~~tlD~H~------DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 575 NIKTNECEMTLDAHN------DRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred eccchhhhhhhhhcc------ceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 999999988876664 889999999999988885 7999999975543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-51 Score=411.09 Aligned_cols=556 Identities=17% Similarity=0.266 Sum_probs=434.6
Q ss_pred ceeecCCCCc-ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCc
Q 001535 317 EVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (1058)
Q Consensus 317 ~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (1058)
.+.|..+... +-+++. +..+.....|...++-..|||.|- ++|+|...|.|+|||....+.+....
T Consensus 32 ~ilY~nGksv~ir~i~~-~~~~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne----------- 98 (603)
T KOG0318|consen 32 NILYTNGKSVIIRNIDN-PASVDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE----------- 98 (603)
T ss_pred eEEEeCCCEEEEEECCC-ccceeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------
Confidence 4555555555 333333 344555667999999999999998 69999999999999987644443322
Q ss_pred ccccccccCCCcceEEEEECCCCCEEEEEeCC----CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEE
Q 001535 396 PFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471 (1058)
Q Consensus 396 ~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~ 471 (1058)
+..-.++|..++|++|+++|++.+.. |.+.+|| +|..+. ++.||...|++++|-|.-.. +++||
T Consensus 99 ------f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~ 166 (603)
T KOG0318|consen 99 ------FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATG 166 (603)
T ss_pred ------eeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEec
Confidence 33356799999999999999877543 3455565 454455 58899999999999997665 89999
Q ss_pred eCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEee---CCCCcEEEEEEc
Q 001535 472 GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYS 547 (1058)
Q Consensus 472 ~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~i~~s 547 (1058)
++|++|.+|+ ..-+-..+++.|...|.++.|+| ||.++++++.||.+.+||-.+++....+. .|.+.|.+++|+
T Consensus 167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs 244 (603)
T KOG0318|consen 167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS 244 (603)
T ss_pred cCCCeEEEeeCCCeeeeecccccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC
Confidence 9999999999 76677788899999999999976 67999999999999999999999988887 788899999999
Q ss_pred cCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccC---cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEec
Q 001535 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1058)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 624 (1058)
||+..+++++. |..+++||+.+.++++++..... ..+. +-|. +..|++.+.+|.|.+++......+..+.
T Consensus 245 PDs~~~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 245 PDSTQFLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred CCCceEEEecC----CceEEEEEeeccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhheec
Confidence 99999999984 89999999999999999875543 1233 3343 6789999999999999999999888887
Q ss_pred cCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceee
Q 001535 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (1058)
Q Consensus 625 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 704 (1058)
. |...|++++.+|++.+|.+|+.||.|.-|+..++.....
T Consensus 318 G--HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~-------------------------------------- 357 (603)
T KOG0318|consen 318 G--HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL-------------------------------------- 357 (603)
T ss_pred c--cccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc--------------------------------------
Confidence 5 455899999999999999999999999999877621100
Q ss_pred ccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeec
Q 001535 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (1058)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 784 (1058)
.+ .+|...|.+++.+..+. +++.+.
T Consensus 358 --------------------------~g----------------------------~~h~nqI~~~~~~~~~~-~~t~g~ 382 (603)
T KOG0318|consen 358 --------------------------AG----------------------------KGHTNQIKGMAASESGE-LFTIGW 382 (603)
T ss_pred --------------------------cc----------------------------ccccceEEEEeecCCCc-EEEEec
Confidence 00 22778888888887665 888888
Q ss_pred cCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceE
Q 001535 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV 864 (1058)
Q Consensus 785 dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~ 864 (1058)
|.++++.++..+....... .. ...+..+++..+|+.+++.+.+..|.+..-.++
T Consensus 383 Dd~l~~~~~~~~~~t~~~~---------------------~~---lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-- 436 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEV---------------------VK---LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-- 436 (603)
T ss_pred CCeEEEEecccCcccccce---------------------ee---cCCCceeEEEcCCCCEEEEEecCcEEEEecCCc--
Confidence 8899988765432211100 00 223334889999988888888666666552222
Q ss_pred EEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCcee--eeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 001535 865 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942 (1058)
Q Consensus 865 ~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iw 942 (1058)
+.+.. -.-...+++++| ++..+|+|+.||.|+||.+..++. ...+..|.++|++++||||+.+||++...+.+.+|
T Consensus 437 ~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 437 VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 22222 234578999999 999999999999999999987653 33456799999999999999999999999999999
Q ss_pred ECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCE
Q 001535 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL 1021 (1058)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 1021 (1058)
|+.+.+....... -|+ ..|.+++|||++.++|+| -|..|.||+++.......+ ..+|...|+.+.|-. ...
T Consensus 515 d~~s~~~~~~~w~----FHt-akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i--knAH~~gVn~v~wld-e~t 586 (603)
T KOG0318|consen 515 DVASREVKTNRWA----FHT-AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII--KNAHLGGVNSVAWLD-EST 586 (603)
T ss_pred EcccCceecceee----eee-eeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe--ccccccCceeEEEec-Cce
Confidence 9999876322221 122 889999999999999997 5999999999876554333 334577799999964 457
Q ss_pred EEEEeCCCcEEEEeCC
Q 001535 1022 VFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 1022 l~t~~~dg~i~iw~~~ 1037 (1058)
+++.+.|.+|++|++.
T Consensus 587 vvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 587 VVSSGQDANIKVWNVT 602 (603)
T ss_pred EEeccCcceeEEeccc
Confidence 8889999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=418.26 Aligned_cols=552 Identities=17% Similarity=0.255 Sum_probs=432.9
Q ss_pred EeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCC
Q 001535 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1058)
Q Consensus 339 ~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1058)
..+.+...|++++.||+|.. |++-...|...+-++.....++..+| ..+|.|+.|||||
T Consensus 50 l~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPng 108 (893)
T KOG0291|consen 50 LPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPNG 108 (893)
T ss_pred EEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCCC
Confidence 34458899999999999994 55556788888888766555443222 4689999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCc-----ceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cC--CCeeEEe
Q 001535 419 NYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--GRKLFNF 490 (1058)
Q Consensus 419 ~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~--~~~~~~~ 490 (1058)
+++|+|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+ .. +-....+
T Consensus 109 ~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l 185 (893)
T KOG0291|consen 109 KFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYAL 185 (893)
T ss_pred cEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEec
Confidence 99998864 4799998764322 223335678999999999999999 899999999999999 33 3336788
Q ss_pred ecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCC-----------------------Cc-----------eEEeeC
Q 001535 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-----------------------GS-----------RVDYDA 536 (1058)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-----------------------~~-----------~~~~~~ 536 (1058)
.+|.+.|.+.-|.. |...+++.+.||.+.+|..+.. +. ..-+..
T Consensus 186 ~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~ 263 (893)
T KOG0291|consen 186 NGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQ 263 (893)
T ss_pred cCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecc
Confidence 99999999988854 5578999999999999977611 11 001122
Q ss_pred CCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 001535 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMD 615 (1058)
Q Consensus 537 ~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~vwd~~ 615 (1058)
....+++.+|++..+.|+++-. .|...+|++....+++.+.-... .|..++|+..|.+|+.|+. -|++.||+..
T Consensus 264 ~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 264 NSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred cccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 2357899999999999998874 78899999999999999887665 7899999999999999875 4899999998
Q ss_pred CCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeecccccccc
Q 001535 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1058)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 695 (1058)
+..-+. +.++|...+++++++|||+++|+|++||.|+|||..++. +.
T Consensus 339 sEsYVl--KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~------------------------------ 385 (893)
T KOG0291|consen 339 SESYVL--KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CF------------------------------ 385 (893)
T ss_pred ccceee--eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EE------------------------------
Confidence 766554 445677799999999999999999999999999987651 11
Q ss_pred CCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecC
Q 001535 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (1058)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 775 (1058)
.++.+ |+..|+.+.|+..
T Consensus 386 -----------------------------------------------------------vTFte---Hts~Vt~v~f~~~ 403 (893)
T KOG0291|consen 386 -----------------------------------------------------------VTFTE---HTSGVTAVQFTAR 403 (893)
T ss_pred -----------------------------------------------------------EEecc---CCCceEEEEEEec
Confidence 12222 8899999999999
Q ss_pred cceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CC-c
Q 001535 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG-K 853 (1058)
Q Consensus 776 ~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg-~ 853 (1058)
|+.+++.+-||+|+.||+..-. ..+ .+.. +......|++..|.|.++++|+ |. .
T Consensus 404 g~~llssSLDGtVRAwDlkRYr----------------------NfR-Tft~-P~p~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 404 GNVLLSSSLDGTVRAWDLKRYR----------------------NFR-TFTS-PEPIQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred CCEEEEeecCCeEEeeeecccc----------------------eee-eecC-CCceeeeEEEEcCCCCEEEeeccceEE
Confidence 9999999999999999875321 111 0111 1345577899999999999988 53 4
Q ss_pred EEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCc-eeeeEecccCCCeeEEEEcCCCCEEEE
Q 001535 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAFSTSLNILVS 932 (1058)
Q Consensus 854 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~d~~~l~s 932 (1058)
|+||++++|+.+-.+.||.++|.+++|+| .+..||+|+.|.+|++||+-.. ..+.++. +...+.+++|+|||+.|++
T Consensus 460 IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 460 IFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred EEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEE
Confidence 99999999999999999999999999999 9999999999999999998755 2344444 7788999999999999999
Q ss_pred EeCCCcEEEEECCCCceeceEEEe--------------cCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCCeee
Q 001535 933 SGADAQLCVWSIDTWEKRKSVTIH--------------IPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERI 997 (1058)
Q Consensus 933 ~s~Dg~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~~~~ 997 (1058)
+..||.|.+||++.+.....+... ..........+.+++|+||.++++| ..+.|++|++.++-.+
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 999999999999876554333221 1111112567899999999999995 7888999999987655
Q ss_pred eeeccCCCC-----------------------------------------------------CCCEEEEEEccCCCEEEE
Q 001535 998 RQWTPQDAL-----------------------------------------------------SAPISCAVYSCNSQLVFA 1024 (1058)
Q Consensus 998 ~~~~~~~~~-----------------------------------------------------~~~v~~l~~s~dg~~l~t 1024 (1058)
+.+...+.+ .-.|.++.|||.|+-+++
T Consensus 618 kkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAa 697 (893)
T KOG0291|consen 618 KKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAA 697 (893)
T ss_pred eeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeee
Confidence 544432210 124788999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEE
Q 001535 1025 TFCDGNIGVFDADTLRLRC 1043 (1058)
Q Consensus 1025 ~~~dg~i~iw~~~~~~~~~ 1043 (1058)
++..| +.||.+.+.-+..
T Consensus 698 atTEG-l~IYsld~~~~FD 715 (893)
T KOG0291|consen 698 ATTEG-LLIYSLDTTILFD 715 (893)
T ss_pred ecccc-eEEEecCCceEEc
Confidence 99877 7899987765543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=417.34 Aligned_cols=542 Identities=16% Similarity=0.297 Sum_probs=440.0
Q ss_pred EEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCC
Q 001535 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1058)
Q Consensus 349 ~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 428 (1058)
-+.|++||.. +.+ ...+.|.++|+.+++...- .-.+...|.+++.||+|.+|++....|
T Consensus 19 nl~ft~dG~s-viS-PvGNrvsv~dLknN~S~Tl-------------------~~e~~~NI~~ialSp~g~lllavdE~g 77 (893)
T KOG0291|consen 19 NLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYTL-------------------PLETRYNITRIALSPDGTLLLAVDERG 77 (893)
T ss_pred cEEECCCCCE-EEe-ccCCEEEEEEccCCcceeE-------------------EeecCCceEEEEeCCCceEEEEEcCCC
Confidence 4789999985 444 3567899999987665321 234778999999999999999999999
Q ss_pred eEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCC---------eeEEeecccCCeeE
Q 001535 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---------KLFNFEGHEAPVYS 499 (1058)
Q Consensus 429 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---------~~~~~~~h~~~v~~ 499 (1058)
.+.+-++.....+.. + ....+|.++.|||+|+ ++|.|. .+.+.||...+. ..+++.+|...|.+
T Consensus 78 ~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~s 150 (893)
T KOG0291|consen 78 RALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITS 150 (893)
T ss_pred cEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeE
Confidence 988888876544432 2 2456899999999999 555554 678999993222 13567889999999
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCc--eEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC----
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---- 573 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---- 573 (1058)
+.|+. |.++|++|+.|-++++|+++..+. ...+.+|...|.+.-|..+...+++.+ +||.+.+|....
T Consensus 151 i~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs----kdG~l~~W~~~~~P~~ 224 (893)
T KOG0291|consen 151 IDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS----KDGALFVWTCDLRPPE 224 (893)
T ss_pred EEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe----cCceEEEEEecCCCcc
Confidence 99965 668999999999999999988777 456778888999999999999999998 599999997651
Q ss_pred -------------------Cce-----e-----eeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEec
Q 001535 574 -------------------GTI-----K-----RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1058)
Q Consensus 574 -------------------~~~-----~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 624 (1058)
++. . +.+-......+++.+|++.-+.|++|-..|...+|.+....++..+.
T Consensus 225 ~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS 304 (893)
T KOG0291|consen 225 LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS 304 (893)
T ss_pred cccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee
Confidence 111 0 11111222368889999999999999999999999999999999998
Q ss_pred cCCCCCCCceEEeeCCCCEEEEEECC-CcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCccee
Q 001535 625 AEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (1058)
Q Consensus 625 ~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 703 (1058)
...+ +|..++|+..|.++|.|+.. |.+.+|+..+..-.++
T Consensus 305 is~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------------------------------- 345 (893)
T KOG0291|consen 305 ISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------------------------------- 345 (893)
T ss_pred cccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-------------------------------------
Confidence 7644 79999999999999999875 7889998765411111
Q ss_pred eccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEee
Q 001535 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (1058)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 783 (1058)
. .+|...+.+++++|||+++++|+
T Consensus 346 -----------------------------------------------------Q---QgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 346 -----------------------------------------------------Q---QGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred -----------------------------------------------------c---cccccceeeEEECCCCcEEEecc
Confidence 1 22888999999999999999999
Q ss_pred ccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCc
Q 001535 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF 862 (1058)
Q Consensus 784 ~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~ 862 (1058)
.||.|+|||. .+|.+.. .+.+ |...|+.+.|+.+|+.+++++ ||+|+.||+...
T Consensus 370 eDgKVKvWn~----------------------~SgfC~v-TFte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 370 EDGKVKVWNT----------------------QSGFCFV-TFTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred CCCcEEEEec----------------------cCceEEE-Eecc--CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 9999999963 4455443 3444 999999999999999999999 999999999999
Q ss_pred eEEEEecCCCC-CeeEEEEecCCCcEEEEEECCC-CEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 001535 863 KVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLC 940 (1058)
Q Consensus 863 ~~~~~~~~~~~-~i~~l~~s~~~~~~lasg~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~ 940 (1058)
...+++..... ...|++..| .|.++..|+.|. .|++|++++|+.+..+.||.++|.+++|+|+|..|+|+|.|.+|+
T Consensus 425 rNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 99999986543 467899998 899999999886 799999999999999999999999999999999999999999999
Q ss_pred EEECCCCc-eeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCCeeeeeeccCC--------------
Q 001535 941 VWSIDTWE-KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQD-------------- 1004 (1058)
Q Consensus 941 iwd~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~-------------- 1004 (1058)
+||+-... ...++... ..+..++|+|||+.|+++ -||.|.+||++.+..+..+.+..
T Consensus 504 iW~if~s~~~vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta 576 (893)
T KOG0291|consen 504 IWDIFSSSGTVETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITA 576 (893)
T ss_pred EEEeeccCceeeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeeh
Confidence 99986542 23334333 778999999999999996 69999999998876654433321
Q ss_pred ---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCccccC
Q 001535 1005 ---ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS 1052 (1058)
Q Consensus 1005 ---~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 1052 (1058)
......+.+++|+||.++++|+....|++|++.++.++.+++.+...+
T Consensus 577 ~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~s 627 (893)
T KOG0291|consen 577 ENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRS 627 (893)
T ss_pred hhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccc
Confidence 124678999999999999999999999999999999999988665443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=414.26 Aligned_cols=383 Identities=22% Similarity=0.368 Sum_probs=311.1
Q ss_pred eecCCCCcccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccc
Q 001535 319 TYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQ 398 (1058)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1058)
........+..+.+..+.-...-+|.++|.|++|+|+|+ .||+|+.|.++++||+.+..+..+
T Consensus 90 ~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t---------------- 152 (480)
T KOG0271|consen 90 TLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT---------------- 152 (480)
T ss_pred eEEeccchhhcccccceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee----------------
Confidence 333334446666666666666677999999999999999 589999999999999999877653
Q ss_pred cccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeec-----CCCeeEEEEEeC
Q 001535 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGD 473 (1058)
Q Consensus 399 ~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-----d~~~~~l~s~~~ 473 (1058)
.++|...|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.
T Consensus 153 ---~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~sk 225 (480)
T KOG0271|consen 153 ---CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSK 225 (480)
T ss_pred ---ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccC
Confidence 889999999999999999999999999999999999988765 6889999999999975 455 7999999
Q ss_pred CCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCE
Q 001535 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552 (1058)
Q Consensus 474 d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 552 (1058)
||+|+||| ..+.++..+.+|+.+|+|++|-. + .++++|+.|++|++|+...+.....+.+|.+.|+.++.+.|-
T Consensus 226 Dg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy-- 300 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY-- 300 (480)
T ss_pred CCCEEEEEccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh--
Confidence 99999999 88899999999999999999842 3 499999999999999998888888999999999998876542
Q ss_pred EEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCC
Q 001535 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 632 (1058)
++ + .-+|.+.++..-..++ . ..+.+..++
T Consensus 301 ~L-----------------R-----------------tgaf~~t~~~~~~~se--------~-~~~Al~rY~-------- 329 (480)
T KOG0271|consen 301 VL-----------------R-----------------TGAFDHTGRKPKSFSE--------E-QKKALERYE-------- 329 (480)
T ss_pred hh-----------------h-----------------ccccccccccCCChHH--------H-HHHHHHHHH--------
Confidence 11 1 1123332221110000 0 000000010
Q ss_pred ceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCC
Q 001535 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1058)
Q Consensus 633 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1058)
...-..+..+++|++|.++.+|+.....+.+..
T Consensus 330 --~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r--------------------------------------------- 362 (480)
T KOG0271|consen 330 --AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR--------------------------------------------- 362 (480)
T ss_pred --HhhccCcceeEEecCCceEEEecccccccchhh---------------------------------------------
Confidence 011123478899999999999875332111100
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEee
Q 001535 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1058)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~ 792 (1058)
T Consensus 363 -------------------------------------------------------------------------------- 362 (480)
T KOG0271|consen 363 -------------------------------------------------------------------------------- 362 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCC
Q 001535 793 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP 871 (1058)
Q Consensus 793 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~ 871 (1058)
..+ |..-|..+.||||++++|+++ |..|++||..+|+.+.+|.+|
T Consensus 363 --------------------------------mtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH 408 (480)
T KOG0271|consen 363 --------------------------------MTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH 408 (480)
T ss_pred --------------------------------hhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence 111 777889999999999999999 999999999999999999999
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001535 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1058)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd 943 (1058)
-..|..++||. |.++|++|+.|.++++|++++.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 409 v~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=418.56 Aligned_cols=578 Identities=16% Similarity=0.240 Sum_probs=446.2
Q ss_pred cEEEEEee-cCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEE
Q 001535 346 TVISMDFH-PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1058)
Q Consensus 346 ~V~~v~~s-p~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1058)
.+..+..+ ..|++ +|+ +.-..|.+||+++|+.... + +...-...|+|++-+||.-.||+|
T Consensus 23 N~~~~~~~~~~Gr~-va~-~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRA-VAV-SALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcE-EEE-eccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEE
Confidence 44444433 45884 443 3456899999999955432 0 122234689999999999999999
Q ss_pred eCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeec
Q 001535 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1058)
Q Consensus 425 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~ 503 (1058)
..||.|+||+..++..+- ++.+|..+|+.+.|...|. .|+|||.|+.|.+|| ....-+.++.||.+.|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875443 6899999999999999999 899999999999999 7777789999999999998875
Q ss_pred ccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC---------
Q 001535 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--------- 574 (1058)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--------- 574 (1058)
. +.+++++.+.|+.|++||+.+..+..+...+...+.++++.+ +.+++++. ++.+.+|++...
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 4 457999999999999999999999999999999999999988 66777664 888999998311
Q ss_pred ---ceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEe------------c---------------
Q 001535 575 ---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST------------D--------------- 624 (1058)
Q Consensus 575 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------~--------------- 624 (1058)
+...++........-.+...++++++++-+.|..+.++.+.+.+.+... .
T Consensus 231 ~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~ 310 (888)
T KOG0306|consen 231 ISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDE 310 (888)
T ss_pred ceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHH
Confidence 1111222111112233556677889999999999999988653321100 0
Q ss_pred -----cCCCCCCCceEEeeCCCC---EEEEEECCCcEEEEEccCCcc---ccccccCCCcccccCcccceeeeecccccc
Q 001535 625 -----AEGGLPNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLR---SLRAVENPPFEALRTPIESVALKVSASSAV 693 (1058)
Q Consensus 625 -----~~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1058)
.-.....+.++.|-|.+. .|+. -.++++..+.++.... ............++..|.+++++.+...++
T Consensus 311 i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 311 IKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred HHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeee
Confidence 000112456777776543 3333 5677888888765211 112222334456777889999988877664
Q ss_pred ccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEe
Q 001535 694 SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1058)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1058)
+++ .+.+++|+..+... .+.+ ..+.+.+..|-
T Consensus 390 Sga--------------------------------------~~SikiWn~~t~kc---iRTi-------~~~y~l~~~Fv 421 (888)
T KOG0306|consen 390 SGA--------------------------------------GESIKIWNRDTLKC---IRTI-------TCGYILASKFV 421 (888)
T ss_pred ecC--------------------------------------CCcEEEEEccCcce---eEEe-------ccccEEEEEec
Confidence 432 28899999874222 2222 34588899999
Q ss_pred cCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CC
Q 001535 774 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG 852 (1058)
Q Consensus 774 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg 852 (1058)
|.+++++.|..+|.+.+||+.... ++. .+. .|.+.|..++.+||++.+++|+ |.
T Consensus 422 pgd~~Iv~G~k~Gel~vfdlaS~~----------------------l~E-ti~--AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 422 PGDRYIVLGTKNGELQVFDLASAS----------------------LVE-TIR--AHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred CCCceEEEeccCCceEEEEeehhh----------------------hhh-hhh--ccccceeeeeecCCCCceEEecCCc
Confidence 999999999999999999875432 111 122 2999999999999999999999 99
Q ss_pred cEEEEECCC-----ceEEEEec-------CCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeE
Q 001535 853 KISLFNMMT-----FKVMTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1058)
Q Consensus 853 ~i~vwd~~~-----~~~~~~~~-------~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 920 (1058)
+|++||..- +...+.+. .-...|.|+.+|| |+++||++--|.+|+||-+.+-+....+.||.-||.+
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS 555 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeE
Confidence 999999741 11111111 1345799999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEE-EECCeEEEEECCCCeeeee
Q 001535 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQ 999 (1058)
Q Consensus 921 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~-~~d~~v~v~d~~~~~~~~~ 999 (1058)
+.+|||++.++|||.|+.|+||-++-|.|-+.+..|. +.|.++.|-|...++.+ |.|+.|+-||....+++..
T Consensus 556 mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd------DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~ 629 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD------DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK 629 (888)
T ss_pred EeccCCcCeEEeccCCCceEEeccccchhhhhhhccc------CceeEEEEcccceeEEEecCcceEEeechhhhhhhee
Confidence 9999999999999999999999999999988776654 88999999999888777 5899999999999999999
Q ss_pred eccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001535 1000 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1058)
Q Consensus 1000 ~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~ 1039 (1058)
+.+| ...|++++.+|+|.++++++.|.+|++|....-
T Consensus 630 L~~H---~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 630 LDGH---HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eccc---hheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 8877 689999999999999999999999999988653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-50 Score=419.87 Aligned_cols=569 Identities=13% Similarity=0.241 Sum_probs=435.7
Q ss_pred eeecCCCCc-ccccCCCCcceEEee-cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCc
Q 001535 318 VTYSSSRHQ-TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (1058)
Q Consensus 318 ~~~~~~~~~-~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (1058)
++.++.++. +|++........... ..+..|+|+.-+|+.- +||+|..||.|+||+..++.....
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t------------- 102 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT------------- 102 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------
Confidence 333344444 888887644333333 4556999999999987 799999999999999987755432
Q ss_pred ccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC
Q 001535 396 PFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1058)
Q Consensus 396 ~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 475 (1058)
+.||...|+++.|+..|..||+||.|+.|.+||+-....+. .+.||...|+.+-|..+.+ ++++.+.|+
T Consensus 103 ------fngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs 171 (888)
T KOG0306|consen 103 ------FNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDS 171 (888)
T ss_pred ------ecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCc
Confidence 88999999999999999999999999999999998755433 5889999999999998777 899999999
Q ss_pred cEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCce-------------EEeeCCCCcE
Q 001535 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-------------VDYDAPGHWC 541 (1058)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-------------~~~~~~~~~i 541 (1058)
.|++|| .+..+..+...|.+.++++++.+ +.+++++.|+.+++|++...... .......+..
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~ 247 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE 247 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence 999999 89999999999999999999954 68999999999999998321111 0111122234
Q ss_pred EEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceee-------------ee-------------------ec-ccCcce
Q 001535 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR-------------TY-------------------AG-FRKKSN 588 (1058)
Q Consensus 542 ~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-------------~~-------------------~~-~~~~~i 588 (1058)
..++..+++++++.-+. |..+.++.+.+.+.+. .. .. .....+
T Consensus 248 i~l~~d~s~r~~~c~g~----d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~ki 323 (888)
T KOG0306|consen 248 INLVTDFSDRFLVCQGA----DKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKI 323 (888)
T ss_pred eEEeecCcccEEEEecc----hhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhhe
Confidence 45566677777777664 7777777765422110 00 00 001134
Q ss_pred eEEEEcCCCC---EEEEEeCCCcEEEEECCC-Cc------eeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 589 GVVQFDTTQN---HFLAVGEDSQIKFWDMDN-VN------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 589 ~~~~~~~~~~---~l~~~~~dg~i~vwd~~~-~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
.++.+.|.+. .|+. -.+.++..|.++. +. ....+...+|...|..++++.+...+++|+ .+.+++|+.
T Consensus 324 ks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~ 401 (888)
T KOG0306|consen 324 KSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNR 401 (888)
T ss_pred eEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEc
Confidence 5566666542 3333 5677888887765 22 233456667888999999999987777765 469999999
Q ss_pred cCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCC
Q 001535 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1058)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 738 (1058)
.+. ++++++... .+.+..|- |.+.++++|...|.+
T Consensus 402 ~t~-kciRTi~~~-------y~l~~~Fv-------------------------------------pgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 402 DTL-KCIRTITCG-------YILASKFV-------------------------------------PGDRYIVLGTKNGEL 436 (888)
T ss_pred cCc-ceeEEeccc-------cEEEEEec-------------------------------------CCCceEEEeccCCce
Confidence 876 445444321 23333444 455566888888999
Q ss_pred CcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCC
Q 001535 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1058)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~ 818 (1058)
.+||+.....-... ..|.+.|++++.+||+..+++++.|.+|++|++..... ..|... ++......
T Consensus 437 ~vfdlaS~~l~Eti--------~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~-----k~lsl~~~ 502 (888)
T KOG0306|consen 437 QVFDLASASLVETI--------RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK-----KVLSLKHT 502 (888)
T ss_pred EEEEeehhhhhhhh--------hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc-----eeeeeccc
Confidence 99998753322222 23999999999999999999999999999999865332 111110 00111111
Q ss_pred ceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCE
Q 001535 819 LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1058)
Q Consensus 819 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v 897 (1058)
.. + .-.+.|.|+.+||||++||++- |++++||-+.+.+..-.+.||.-+|.|+..|| |++++++|+.|.+|
T Consensus 503 rt----L---el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnV 574 (888)
T KOG0306|consen 503 RT----L---ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNV 574 (888)
T ss_pred eE----E---eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCce
Confidence 11 1 1578899999999999999998 99999999999999999999999999999999 99999999999999
Q ss_pred EEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCE
Q 001535 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1058)
Q Consensus 898 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~ 977 (1058)
+||-+.-|.|.+.+-+|.+.|.++.|-|+...+.++|.|+.|+-||-+..+++..+..+. ..|.+++.+|+|.+
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~------~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH------SEVWCLAVSPNGSF 648 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch------heeeeeEEcCCCCe
Confidence 999999999999999999999999999999999999999999999999988776665443 89999999999999
Q ss_pred EEEE-ECCeEEEEECCCC
Q 001535 978 MLVV-HETQLAIYDASKM 994 (1058)
Q Consensus 978 l~~~-~d~~v~v~d~~~~ 994 (1058)
++++ +|..|++|.-...
T Consensus 649 vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 649 VVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EEeccCCceeEeeeccCc
Confidence 9995 7999999996653
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=379.67 Aligned_cols=533 Identities=14% Similarity=0.237 Sum_probs=412.7
Q ss_pred eecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeEE
Q 001535 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1058)
Q Consensus 352 ~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~ 431 (1058)
-.|.|..+|.+. ...|.+-++++.... .++.+|...++-..|||.|-|+|+|...|+|+
T Consensus 26 ~dpkgd~ilY~n--Gksv~ir~i~~~~~~-------------------~iYtEH~~~vtVAkySPsG~yiASGD~sG~vR 84 (603)
T KOG0318|consen 26 GDPKGDNILYTN--GKSVIIRNIDNPASV-------------------DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVR 84 (603)
T ss_pred cCCCCCeEEEeC--CCEEEEEECCCccce-------------------eeeccccceeEEEEeCCCceEEeecCCcCcEE
Confidence 467788777764 457888888766543 24888999999999999999999999999999
Q ss_pred EEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeC--C--CcEEEEecCCCeeEEeecccCCeeEEeecccCC
Q 001535 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--D--KLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507 (1058)
Q Consensus 432 iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~--d--~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 507 (1058)
|||....+.+ ...+++.-.++|.+++|+.|+++ ++..++ + |.+.+|| +|..+-.+.||...|++++|-|+..
T Consensus 85 IWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 85 IWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPSRP 160 (603)
T ss_pred EEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCCCc
Confidence 9998764433 22357778899999999999995 554443 2 2455666 7777888999999999999987754
Q ss_pred ceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeee---ccc
Q 001535 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---GFR 584 (1058)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~ 584 (1058)
-.+++|+.|++|.+|+-...+-...+..|..-|.++.|+|||.++++++. |+.+.+||-.+|+.+..+. +|.
T Consensus 161 -fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 161 -FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAHK 235 (603)
T ss_pred -eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCcc
Confidence 57999999999999987666667778888899999999999999999985 9999999999999999998 666
Q ss_pred CcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC-CCCceEEeeCCCCEEEEEECCCcEEEEEccCCcc
Q 001535 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (1058)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1058)
+ .|..++|+||+..+++++.|.+++|||+.+.+++.++...... .....+-|. ...|++.+.+|+|.+++.....
T Consensus 236 G-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~- 311 (603)
T KOG0318|consen 236 G-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS- 311 (603)
T ss_pred c-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-
Confidence 6 8999999999999999999999999999999999988764431 112334454 5588999999999999876652
Q ss_pred ccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCccee
Q 001535 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1058)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~ 743 (1058)
..+.+
T Consensus 312 ~~~~i--------------------------------------------------------------------------- 316 (603)
T KOG0318|consen 312 VLKVI--------------------------------------------------------------------------- 316 (603)
T ss_pred hhhee---------------------------------------------------------------------------
Confidence 22111
Q ss_pred eeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeee
Q 001535 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1058)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 823 (1058)
.+|...|++++.+||+++|++++.||.|.-|+...+.. .
T Consensus 317 -----------------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~------------------------~ 355 (603)
T KOG0318|consen 317 -----------------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS------------------------D 355 (603)
T ss_pred -----------------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc------------------------c
Confidence 23888999999999999999999999999998654321 1
Q ss_pred eccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEE--ecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEE
Q 001535 824 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1058)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd 901 (1058)
.+.+..|...|.+++.+..+.++.++-|+++++.++..+..... ++-.. ...+++..+ ++.+++..+.++-+.+-+
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~~lav~~-d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS-QPKGLAVLS-DGGTAVVACISDIVLLQD 433 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC-CceeEEEcC-CCCEEEEEecCcEEEEec
Confidence 13233489999999998888888888899999999865433221 12122 233888888 666666666554443333
Q ss_pred ccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE
Q 001535 902 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1058)
Q Consensus 902 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~ 981 (1058)
... +.++. -.-...+++++|+++.++.|+.|+.|.||.+..++....... ..|. ++++.++||||+.|||++
T Consensus 434 ~~~---~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~-a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 434 QTK---VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHR-AAITDVAYSPDGAYLAAG 505 (603)
T ss_pred CCc---ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee---eccc-CCceEEEECCCCcEEEEe
Confidence 322 22222 234567999999999999999999999999998664322211 1222 899999999999999998
Q ss_pred -ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Q 001535 982 -HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1058)
Q Consensus 982 -~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~~~~~~ 1046 (1058)
..+.+.+||+.+.+.... ....|.+.|.+++|||+.+++|||+.|-+|.||+++.......+.
T Consensus 506 Da~rkvv~yd~~s~~~~~~--~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik 569 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKTN--RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK 569 (603)
T ss_pred ccCCcEEEEEcccCceecc--eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec
Confidence 588999999998876222 222348999999999999999999999999999998765544443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=377.35 Aligned_cols=366 Identities=19% Similarity=0.289 Sum_probs=295.7
Q ss_pred ccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEE
Q 001535 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1058)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 479 (1058)
..+.||.++|.|++|||+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~l 183 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRL 183 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEE
Confidence 3488999999999999999999999999999999999977555 7889999999999999999 8999999999999
Q ss_pred Ee-cCCCee-EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEe
Q 001535 480 WE-LSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 480 wd-~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 557 (1058)
|| .+|+++ ..+.+|...|++++|.|-. ..|..+++++++
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s 224 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS 224 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc
Confidence 99 777665 7899999999999996521 125556777776
Q ss_pred ccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEe
Q 001535 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1058)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1058)
+|+.++|||+..++++..+.+|.. .|+|+.|..+ .++++|+.|++|++|+...|.+...+..|+| .|+.++.
T Consensus 225 ----kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 225 ----KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ----CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 478888888888888999999998 8999999865 4899999999999999999999999987776 7888887
Q ss_pred eCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccC
Q 001535 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (1058)
Q Consensus 638 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1058)
+.+- .|-+| +|.|.++..-
T Consensus 297 sTdy-~LRtg------------------------------------af~~t~~~~~------------------------ 315 (480)
T KOG0271|consen 297 STDY-VLRTG------------------------------------AFDHTGRKPK------------------------ 315 (480)
T ss_pred cchh-hhhcc------------------------------------ccccccccCC------------------------
Confidence 7651 11111 1222211110
Q ss_pred CCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccc
Q 001535 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (1058)
Q Consensus 718 ~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~ 797 (1058)
.++ +.+ .
T Consensus 316 -----------------------------------------------------~~s-e~~-------~------------ 322 (480)
T KOG0271|consen 316 -----------------------------------------------------SFS-EEQ-------K------------ 322 (480)
T ss_pred -----------------------------------------------------ChH-HHH-------H------------
Confidence 000 000 0
Q ss_pred cCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECC-CceEEEEecCCCCCe
Q 001535 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM-TFKVMTTFMSPPPAS 875 (1058)
Q Consensus 798 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~-~~~~~~~~~~~~~~i 875 (1058)
.....|+ .+.-..+..+++|+ |.++.+|+-. +.+++..+.+|...|
T Consensus 323 ----------~Al~rY~----------------------~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV 370 (480)
T KOG0271|consen 323 ----------KALERYE----------------------AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV 370 (480)
T ss_pred ----------HHHHHHH----------------------HhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence 0000000 01112346788888 6789999865 445888999999999
Q ss_pred eEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEE
Q 001535 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 955 (1058)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 955 (1058)
+.+.||| |++++|+++-|..|++|+-.+|+.+.+|+||-++|+.++||.|.++|+||+.|.++++||+.+.+...-
T Consensus 371 n~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D--- 446 (480)
T KOG0271|consen 371 NHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD--- 446 (480)
T ss_pred eeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc---
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999654332
Q ss_pred ecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEE
Q 001535 956 HIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYD 990 (1058)
Q Consensus 956 ~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d 990 (1058)
..||. ++|.++.|||||..++++ .|+.+++|.
T Consensus 447 --LpGh~-DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 447 --LPGHA-DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --CCCCC-ceEEEEEecCCCceeecCCCceEEEeec
Confidence 34444 999999999999999995 788899985
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=353.12 Aligned_cols=591 Identities=13% Similarity=0.158 Sum_probs=401.7
Q ss_pred EEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEe--
Q 001535 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-- 425 (1058)
Q Consensus 348 ~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-- 425 (1058)
..++.+|... ++|- -....|.+||.+..++- +++..|..+++|++||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccC
Confidence 4455566544 3333 23458899998765543 34667888999999999999999984
Q ss_pred CCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeC--CCcEEEEe-cCCCeeEEeecccCCeeEEee
Q 001535 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1058)
Q Consensus 426 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~--d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~ 502 (1058)
....++||++.....+. +|..|+-.|+|++|+|.++ ++++.+. |-.|.+|| ...-.. .-..-...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~-asnkiss~Vsav~f 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSG-ASNKISSVVSAVAF 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccc-cccccceeEEEEEE
Confidence 56679999999877555 6889999999999999999 6776654 44677888 332221 12224567888888
Q ss_pred cccCCceEEEEEeeCCeEEEEecCCCCceE---EeeCCCCcEEEEEE------------ccCCCEEEEEeccCCCCceEE
Q 001535 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLY------------SADGSRLFSCGTSKDGDSFLV 567 (1058)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~~i~~i~~------------s~~~~~l~~~~~~~~~~~~i~ 567 (1058)
+++|.++++.+ ...|++|.++...... .+.+...-...+.+ ..+..+.++. .|.+.
T Consensus 174 --sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLv 244 (1080)
T KOG1408|consen 174 --SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLV 244 (1080)
T ss_pred --ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------cccee
Confidence 55788888876 5789999987655211 11111100000000 0111111111 22222
Q ss_pred EEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccC---------------------
Q 001535 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--------------------- 626 (1058)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------------- 626 (1058)
-+. ..+++...........+|++.+ .++|++|+.+|.|++|+..+-..+.++...
T Consensus 245 EFS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~ 320 (1080)
T KOG1408|consen 245 EFS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESS 320 (1080)
T ss_pred eec--hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccC
Confidence 222 2222222221222245566665 579999999999999998775544333211
Q ss_pred -CCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeec
Q 001535 627 -GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1058)
Q Consensus 627 -~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~ 705 (1058)
.......++.|++....|.+...|..+++||+..-.+.-+ .+..-.+...|+.+..-|-.
T Consensus 321 ~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk---~~s~lyHS~ciW~Ve~~p~n---------------- 381 (1080)
T KOG1408|consen 321 PAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK---CSSMLYHSACIWDVENLPCN---------------- 381 (1080)
T ss_pred cccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccc---eeeeeeccceeeeecccccc----------------
Confidence 1112234678899899999999999999999987532221 12222233334443322210
Q ss_pred cCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEe-------c--------------------
Q 001535 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM-------P-------------------- 758 (1058)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~-------~-------------------- 758 (1058)
+.....+..| ..-++++++|++|++|++........++.-.+ +
T Consensus 382 ---------v~~~~~aclp-~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka 451 (1080)
T KOG1408|consen 382 ---------VHSPTAACLP-RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKA 451 (1080)
T ss_pred ---------ccCcccccCC-ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCccccc
Confidence 0011111122 23478999999999999986333322211110 0
Q ss_pred --CCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeE
Q 001535 759 --ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1058)
Q Consensus 759 --~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1058)
..-+....+++++++|+|++|++|..-|.++||++..-.. + ..+. .|...|.|
T Consensus 452 ~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~-~~~e--AHesEilc 506 (1080)
T KOG1408|consen 452 LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY----------------------T-CFME--AHESEILC 506 (1080)
T ss_pred chhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----------------------h-hhee--cccceeEE
Confidence 0122345789999999999999999999999998753211 0 0122 28999999
Q ss_pred EEEec---CCCEEEEEe-CCcEEEEECCC-ceEEEEecCCCCCeeEEEEecCCC--cEEEEEECCCCEEEEEccCceeee
Q 001535 837 IALSK---NDSYVMSAT-GGKISLFNMMT-FKVMTTFMSPPPASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRVDEVKS 909 (1058)
Q Consensus 837 ~~~s~---dg~~la~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~--~~lasg~~dg~v~iwd~~~~~~~~ 909 (1058)
+.||. ..++||+++ |.-|.|||+.. ..+++++.+|...|+++.|.- +| ..+++++.|+.|.+--.....-..
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~ 585 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGR 585 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCce
Confidence 99986 357899999 77799999874 467889999999999999987 44 667888889877654333211111
Q ss_pred Eecc-----cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-EC
Q 001535 910 KLKG-----HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HE 983 (1058)
Q Consensus 910 ~~~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d 983 (1058)
.+.. ....++.++..|..+++++++.|+.|+|||+.+|+..+.+..... + .+....+...|.|.|++++ +|
T Consensus 586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~--~-eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD--H-EGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc--C-CCceEEEEECCCccEEEEeecC
Confidence 2221 235688999999999999999999999999999998877765432 2 2667889999999999995 89
Q ss_pred CeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001535 984 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1058)
Q Consensus 984 ~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~ 1039 (1058)
+++.++|..+|+++....+| +..|+.+.|++|.+.|++.+.||+|+||.+..-
T Consensus 663 ktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred CceEEEEeccchhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999999998876 899999999999999999999999999999753
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=335.01 Aligned_cols=301 Identities=19% Similarity=0.295 Sum_probs=259.0
Q ss_pred CCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccC--CCccccccceeecccccCccccccc-ccC----C
Q 001535 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQASI-FKD----V 405 (1058)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----h 405 (1058)
.|....+.++|+.+|.+++|+|-..-++|+|+.|-+.++|++.. +.......+ ++.+ +.+ .
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l------------rh~~~~~~~s~~~ 234 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL------------RHCIREGGKSVPS 234 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh------------hhhhhhhcccCCc
Confidence 45667777889999999999997665799999999999999974 111110000 0000 111 2
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC
Q 001535 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1058)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~ 484 (1058)
+..|++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCc
Confidence 4689999999999999999999999999987643 33 5889999999999999999 899999999999999 999
Q ss_pred CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCc
Q 001535 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1058)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~ 564 (1058)
...+.+.-|..+-..+.|.. + ..+++++.|+.|+++.+....+..++.+|.+.|.++.|+|.|.+|++++. |+
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~--~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~ 381 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQS--N-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DG 381 (524)
T ss_pred eEEEeeeeccCCccceEEec--C-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CC
Confidence 99999999999877777743 2 57999999999999999999999999999999999999999999999984 99
Q ss_pred eEEEEeCCCCceeeeeecccCcceeEEEEcCCC---------CEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceE
Q 001535 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1058)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v 635 (1058)
++++|..........+..|.+ .|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|.++
T Consensus 382 TlkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysv 458 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSV 458 (524)
T ss_pred eeEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEE
Confidence 999999999999999999988 78889999875 47899999999999999999999998754 4589999
Q ss_pred EeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+|+|+|+++|+|+.||.|.+|+..++
T Consensus 459 afS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 459 AFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EecCCCcEEEecCCCCeeEeccccch
Confidence 99999999999999999999998776
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=333.76 Aligned_cols=620 Identities=14% Similarity=0.153 Sum_probs=397.5
Q ss_pred eEEee-cCCCcEEEEEeecCCC--eEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEE
Q 001535 337 VAVSL-HQGSTVISMDFHPSHQ--TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1058)
Q Consensus 337 ~~~~~-~h~~~V~~v~~sp~g~--~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1058)
...++ +|..+|+|+.|-|+.+ -.+++|+.|+.|++|.++...... ...+.+|...+.|+.
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~-----------------i~~~~g~~~~~~cv~ 108 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIK-----------------IYTIQGHCKECVCVV 108 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEE-----------------EEeecCcceeEEEEE
Confidence 34444 4999999999999876 137999999999999998433221 122556666555553
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCcceeeee--ecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC--CeeE
Q 001535 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ--IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKLF 488 (1058)
Q Consensus 414 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~--l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~--~~~~ 488 (1058)
..-....+.+.|+++.+||.+..+ +..... +.....--.|+++.++.+.++++.|+.+..|.++. ..+ +.+.
T Consensus 109 --a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 109 --ARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred --eeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 333333333689999999995544 111111 22222334577777866655788888888899988 433 4467
Q ss_pred EeecccCCeeEEeecccCC-ceEEEEEeeCCeEEEEecCCCC--------------------c-e----------EEeeC
Q 001535 489 NFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMG--------------------S-R----------VDYDA 536 (1058)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~--------------------~-~----------~~~~~ 536 (1058)
.+.||.+.|.+++|..... .-+|++++.|..||+|.+.... . . ..+.+
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 8899999999999976544 5689999999999999874333 0 0 01236
Q ss_pred CCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc--eeeeee----cccCcceeEEEEcCCCCEEEEEeCCCcEE
Q 001535 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYA----GFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1058)
Q Consensus 537 ~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 610 (1058)
|..+|+++.|+|.+..|++++. |..+.+|...+.. -+.... ++.........|+|+++.+++-+..|..+
T Consensus 266 HeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 266 HEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred cccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 8889999999999988888885 8899999876542 222221 12222466788999999999999999999
Q ss_pred EEECC-CCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeecc
Q 001535 611 FWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1058)
Q Consensus 611 vwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 689 (1058)
+|... ...........+|...|..++|+|.|.++.+.+.|.+-|+|-.-..+.....+..++ .+.-.+.++++-+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ--iHGyDl~c~~~vn-- 417 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ--IHGYDLTCLSFVN-- 417 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc--cccccceeeehcc--
Confidence 99832 233344444557788999999999999999999999999986542211111111111 1111122333222
Q ss_pred ccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEE
Q 001535 690 SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769 (1058)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 769 (1058)
....+++|...+.+++|+.... ....+ ..+.+
T Consensus 418 -----------------------------------~~~~FVSgAdEKVlRvF~aPk~----fv~~l---------~~i~g 449 (764)
T KOG1063|consen 418 -----------------------------------EDLQFVSGADEKVLRVFEAPKS----FVKSL---------MAICG 449 (764)
T ss_pred -----------------------------------CCceeeecccceeeeeecCcHH----HHHHH---------HHHhC
Confidence 1223445555555666654310 00000 01111
Q ss_pred -----EEEecCcceEEEeeccCeeEEe-eeeccccCCC--CcccccccceeeccCCC-ceee-----eeccCCCCCCCee
Q 001535 770 -----LLYTNSAVGLLALGSNGVQKLW-KWHRNEQNPS--GKATASAVPQHWLPSSG-LLMA-----NDVAGVNLEEAVP 835 (1058)
Q Consensus 770 -----l~~s~~~~~l~~~~~dg~v~vw-~~~~~~~~~~--g~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~v~ 835 (1058)
..-.|+|..+-+-+-...-..- +.+++..... ..........+..+... .+.. ...+-.+|...|.
T Consensus 450 ~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~ 529 (764)
T KOG1063|consen 450 KCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVY 529 (764)
T ss_pred ccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEE
Confidence 1111222211111110000000 0000000000 00000000001111110 0000 0011124999999
Q ss_pred EEEEecCCCEEEEEe-C-----CcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCcee--
Q 001535 836 CIALSKNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-- 907 (1058)
Q Consensus 836 ~~~~s~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~-- 907 (1058)
+++.||+|+++|++. . ..|++|+..+...+..+.+|.-.|+.++||| |+++|++.+.|+++.+|.......
T Consensus 530 ~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e 608 (764)
T KOG1063|consen 530 ALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDE 608 (764)
T ss_pred EEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchh
Confidence 999999999999996 2 2399999999999999999999999999999 999999999999999999865421
Q ss_pred --eeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeceEEEecCCCCCCCCceEEEEcCC----CC-EE
Q 001535 908 --KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW--EKRKSVTIHIPAGKTPTGDTRVQFNAD----QV-RM 978 (1058)
Q Consensus 908 --~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~l~~s~d----~~-~l 978 (1058)
....+.|+.-|.+..|+||+++++|+|.|++|++|..... +.+..+ .. ......|+.+++.|- .. .+
T Consensus 609 ~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~--a~--~~~~~aVTAv~~~~~~~~e~~~~v 684 (764)
T KOG1063|consen 609 FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF--AC--LKFSLAVTAVAYLPVDHNEKGDVV 684 (764)
T ss_pred hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--ch--hccCCceeeEEeeccccccccceE
Confidence 2346789999999999999999999999999999999887 333322 11 112278899988772 23 45
Q ss_pred EEE-ECCeEEEEECCC---------CeeeeeeccCCCCCCCEEEEEEccC----------CCEEEEEeCCCcEEEEeCC
Q 001535 979 LVV-HETQLAIYDASK---------MERIRQWTPQDALSAPISCAVYSCN----------SQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 979 ~~~-~d~~v~v~d~~~---------~~~~~~~~~~~~~~~~v~~l~~s~d----------g~~l~t~~~dg~i~iw~~~ 1037 (1058)
++| ..|.|.+|..+. ......+.....|...|..+.|+|. ...|++|++|.+++++++.
T Consensus 685 avGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 685 AVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 556 689999999661 1122333344456789999999975 2367999999999999874
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=335.22 Aligned_cols=284 Identities=17% Similarity=0.253 Sum_probs=265.3
Q ss_pred eecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC--
Q 001535 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-- 417 (1058)
Q Consensus 340 ~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 417 (1058)
.++.+.+|..+.||+|++ .|||||-+|.++||+..+...+. .|.||.+.|.++.|+|.
T Consensus 171 Q~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~ 230 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDS 230 (459)
T ss_pred hccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCC
Confidence 346788999999999999 69999999999999998886553 39999999999999996
Q ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCC
Q 001535 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1058)
Q Consensus 418 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~ 496 (1058)
+..||||+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccc
Confidence 6799999999999999999877666 6889999999999999999 899999999999999 899999999999999
Q ss_pred eeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCce
Q 001535 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1058)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1058)
|.+++|++ ||.++++|+.|..-++||++++.+...+.+|..+|.++.|+|+|..+++|+ +|++++|||++..+.
T Consensus 306 v~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs----~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 306 VFSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS----SDNTCKVWDLRMRSE 379 (459)
T ss_pred cceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC----CCCcEEEeeeccccc
Confidence 99999977 779999999999999999999999999999999999999999999999998 499999999999999
Q ss_pred eeeeecccCcceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEE
Q 001535 577 KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1058)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 655 (1058)
+.++.+|.+ .|+.++|+| .|.+|++++.|+++++|...+..+++.+.+| ...|.++.+++++.++++++.|.++++
T Consensus 380 ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 380 LYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred ceecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEEEeccCCceEEEeccCceeee
Confidence 999999998 899999998 7789999999999999999999999999855 558999999999999999999999999
Q ss_pred EE
Q 001535 656 LA 657 (1058)
Q Consensus 656 w~ 657 (1058)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=328.87 Aligned_cols=474 Identities=16% Similarity=0.274 Sum_probs=361.3
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
+++.|.||+|+|...++|+ +-..|.|.|||.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw~la-~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILA-ALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceEEE-eeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 8899999999999997554 56799999999999888765 333567899999999999999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeEEeecccCCeeEE
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~h~~~v~~~ 500 (1058)
+|++|..|+||+..+++.++ .+.+|.+.|.+++.+|... +++|+|+|-+|++|| ..-.+.++|.||+..|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 6889999999999999998 899999999999999 4556789999999999999
Q ss_pred eecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCC--CEEEEEeccCCCCceEEEEeCCCCceee
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1058)
+|.|. |.+.+++++.|++|++|.+....+..++.+|...|+++.+-+.| .+|++++ .|..+++||..+..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga----DD~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA----DDLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC----CCceEEEeecchHHHHH
Confidence 99987 55799999999999999999999999999999999999998855 5899988 49999999999999999
Q ss_pred eeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
++.||.. .|..++|+|.-..+++|++||+++||+..+.+...++..... .++|++-.+.++.+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999988888876543 7999999999999999999988765 22
Q ss_pred cCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCC
Q 001535 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1058)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 738 (1058)
... ...+.+++.|+.+
T Consensus 298 gre------------------eP~vsMd~~gKIi---------------------------------------------- 313 (794)
T KOG0276|consen 298 GRE------------------EPAVSMDSNGKII---------------------------------------------- 313 (794)
T ss_pred cCC------------------CCceeecCCccEE----------------------------------------------
Confidence 111 1123344444333
Q ss_pred CcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCC
Q 001535 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1058)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~ 818 (1058)
|... +.|..+.. -+.+.++ ++..|
T Consensus 314 --wa~~--------------------~ei~~~~~-------ks~~~~~---------------------------ev~Dg 337 (794)
T KOG0276|consen 314 --WAVH--------------------SEIQAVNL-------KSVGAQK---------------------------EVTDG 337 (794)
T ss_pred --EEcC--------------------ceeeeeec-------eeccCcc---------------------------cccCC
Confidence 2111 01111100 0000000 11122
Q ss_pred ceeeeeccCCC-CCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCE
Q 001535 819 LLMANDVAGVN-LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1058)
Q Consensus 819 ~~~~~~~~~~~-~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v 897 (1058)
+.+....+..+ ..-....++-||+|+++++++||.-.||..-..+ ....+.-....|++ |....|+-..++.|
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~v 411 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNV 411 (794)
T ss_pred ccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCce
Confidence 21111111100 1112235788999999999999998888743221 12445567789999 76777777778999
Q ss_pred EEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCE
Q 001535 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1058)
Q Consensus 898 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~ 977 (1058)
+++ +..+....+..... +..+ -.|.+|...+ ++.+++||.++++.+..+... ...+.|+.+|.+
T Consensus 412 ki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~---------~k~v~w~d~g~l 475 (794)
T KOG0276|consen 412 KIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVRRIEVT---------SKHVYWSDNGEL 475 (794)
T ss_pred EEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEEEEeec---------cceeEEecCCCE
Confidence 998 66665555542211 1111 2355555555 556999999999987776654 367999999999
Q ss_pred EEEEECCeEEEEECC
Q 001535 978 MLVVHETQLAIYDAS 992 (1058)
Q Consensus 978 l~~~~d~~v~v~d~~ 992 (1058)
++.+.|...+++...
T Consensus 476 Vai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 476 VAIAGDDSFYILKFN 490 (794)
T ss_pred EEEEecCceeEEEec
Confidence 999988886666644
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=335.12 Aligned_cols=500 Identities=16% Similarity=0.226 Sum_probs=360.5
Q ss_pred CCCcEEEEEeecCCCeEEEEEe--ccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1058)
|..+++|++|||+|+ ++|+|- ....+++|++.....+.. +..|...|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 677999999999999 589985 455899999988766554 7789999999999999999
Q ss_pred EEEEeC--CCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeE---------
Q 001535 421 VGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF--------- 488 (1058)
Q Consensus 421 las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~--------- 488 (1058)
+++.+. |-.|.+||+....... -+.-...|..++|+.||. +++|.+ ...|++|. ..++...
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 997664 5568889887643322 223456799999999999 788887 67899999 4333110
Q ss_pred ----Ee------------------------ecc-----------------cCCeeEEeecccCCceEEEEEeeCCeEEEE
Q 001535 489 ----NF------------------------EGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1058)
Q Consensus 489 ----~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w 523 (1058)
.+ .|| +....||++ +.++|++|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccceeeec
Confidence 00 111 112234444 23689999999999999
Q ss_pred ecCCCCceEEeeCC------------------------CCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceee-
Q 001535 524 LYDTMGSRVDYDAP------------------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR- 578 (1058)
Q Consensus 524 d~~~~~~~~~~~~~------------------------~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 578 (1058)
+..+.....++... -....++.|++....+.... +|..+++||++.-+.+.
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY----ndhSlYvWDvrD~~kvgk 361 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY----NDHSLYVWDVRDVNKVGK 361 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE----cCceEEEEeccccccccc
Confidence 87653322211110 01345778998888888777 59999999998754432
Q ss_pred --eeecccCcceeEEEEcC-----------CCCEEEEEeCCCcEEEEECCCCceeeEe-------------c--------
Q 001535 579 --TYAGFRKKSNGVVQFDT-----------TQNHFLAVGEDSQIKFWDMDNVNILTST-------------D-------- 624 (1058)
Q Consensus 579 --~~~~~~~~~i~~~~~~~-----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------~-------- 624 (1058)
.+-.|.. -|+.+.--| -...+++++.|++|++|++..+..-..+ .
T Consensus 362 ~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 362 CSSMLYHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred eeeeeeccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 2223332 233332222 0235889999999999999763211100 0
Q ss_pred --------------cCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccc
Q 001535 625 --------------AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1058)
Q Consensus 625 --------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 690 (1058)
.-+....+.+++.+|+|++||+|..-|++++|++.+. .....++.| ...|.++.++.--
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAH-----esEilcLeyS~p~- 513 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAH-----ESEILCLEYSFPV- 513 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-hhhhheecc-----cceeEEEeecCch-
Confidence 0011235789999999999999999999999999765 333333433 3456667666321
Q ss_pred cccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEE
Q 001535 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1058)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1058)
...+.+++++.|.-|.+||....... ..++ .+|...|+++
T Consensus 514 ---------------------------------~~~kLLASasrdRlIHV~Dv~rny~l----~qtl---d~HSssITsv 553 (1080)
T KOG1408|consen 514 ---------------------------------LTNKLLASASRDRLIHVYDVKRNYDL----VQTL---DGHSSSITSV 553 (1080)
T ss_pred ---------------------------------hhhHhhhhccCCceEEEEecccccch----hhhh---cccccceeEE
Confidence 12367789999999999998643221 1123 3499999999
Q ss_pred EEecCc--ceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEE
Q 001535 771 LYTNSA--VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1058)
Q Consensus 771 ~~s~~~--~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1058)
.|...| ..++++|.|..+.+-. ... . .+|.+.... ........+..+++.|..+++++
T Consensus 554 KFa~~gln~~MiscGADksimFr~-~qk--~----------------~~g~~f~r~-t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRV-NQK--A----------------SSGRLFPRH-TQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred EEeecCCceEEEeccCchhhheeh-hcc--c----------------cCceecccc-ccccccceEEEeeeCCCcceEEE
Confidence 999888 7889999997765421 110 0 011110000 00013556889999999999999
Q ss_pred Ee-CCcEEEEECCCceEEEEecC---CCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEc
Q 001535 849 AT-GGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (1058)
Q Consensus 849 ~~-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 924 (1058)
++ |..|+|||+++++..+.|++ |.+....+...| .|-|||+.+.|+++.++|+.+|+++.+..||...|+.+.|+
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 98 89999999999999999986 556788899999 99999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 001535 925 TSLNILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 925 ~d~~~l~s~s~Dg~i~iwd~~~ 946 (1058)
+|.+.|++++.||.|.||.+..
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhheeecCCceEEEEECch
Confidence 9999999999999999999864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=308.26 Aligned_cols=296 Identities=16% Similarity=0.246 Sum_probs=264.3
Q ss_pred CCCcceEEeec-CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceE
Q 001535 332 DLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1058)
Q Consensus 332 ~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1058)
.......++|. |...|.++.|++|.+ .++++|.||.+.|||.-+...++- +.-....|.
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVM 101 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVM 101 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEE
Confidence 33344556666 999999999999999 589999999999999988765543 334678999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCC---cceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCe
Q 001535 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1058)
Q Consensus 411 ~l~~spdg~~las~~~dg~i~iwd~~~~~---~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~ 486 (1058)
.++|+|.|+++|+|+.|+...||++.+.+ ..+....+.+|.+.+.|+.|.+|+. |+|+|.|.+..+|| ++|+.
T Consensus 102 tCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 102 TCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred EEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceE
Confidence 99999999999999999999999998652 2344457899999999999999775 89999999999999 99999
Q ss_pred eEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceE
Q 001535 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1058)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i 566 (1058)
+..|.+|.+.|.++++.|+ +++.+++|+.|+..++||++.+.....+.+|...|++++|.|+|.-+++|+ .|+..
T Consensus 179 ~~~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS----DD~tc 253 (343)
T KOG0286|consen 179 TQVFHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS----DDATC 253 (343)
T ss_pred EEEecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC----CCcee
Confidence 9999999999999999886 778999999999999999999999999999999999999999999999998 49999
Q ss_pred EEEeCCCCceeeeeeccc-CcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEE
Q 001535 567 VEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1058)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 645 (1058)
++||++..+.+..|.... ...+++++|+..|++|++|..|.++.+||.-.++.+..+..| ...|.|+..+|||..++
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSPDGMAVA 331 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECCCCcEEE
Confidence 999999999988887443 236889999999999999999999999999999999998855 45899999999999999
Q ss_pred EEECCCcEEEEE
Q 001535 646 VTTADNGFKILA 657 (1058)
Q Consensus 646 ~~~~dg~i~iw~ 657 (1058)
+|+.|.+++||.
T Consensus 332 TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 TGSWDSTLRIWA 343 (343)
T ss_pred ecchhHheeecC
Confidence 999999999994
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=333.48 Aligned_cols=565 Identities=13% Similarity=0.170 Sum_probs=417.6
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
+.+.|+|++=+.+-- ++|. ...|.+|.- |+.+. .+..+|.+.|.-+. |=|.+++
T Consensus 75 lp~~I~alas~~~~v-y~A~---g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV-YVAS---GNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE-EEec---CcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceEE
Confidence 788999998766643 2333 346666653 43322 23666777777765 4688999
Q ss_pred EEeCCCeEEEEEecCC-Ccce-eeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeE
Q 001535 423 VAFTKHLIQLYSYAGS-NDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~-~~~~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 499 (1058)
++..++.+.||+..++ +... ....++...+.|+++. +|..---.++.|+.+|.+.+|+ .+++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999885 2211 1111222222376663 4443212588999999999999 999999999999999999
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeee
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1058)
+.-+|.- ..++.|..+|+|.+++++..+....+....+.|++++|..||..+++.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9876644 68999999999999999999999999988899999999999998776664 468899999999998888
Q ss_pred eecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeeEeccCCCCCCCceEEee-CCCCEEEEEECCCcEEEE
Q 001535 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGFKIL 656 (1058)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw 656 (1058)
....+.+.+....|-+....+++++.|..+++|=.+ +|.+.......+|..+..|+.|. .+|..+.+++.|++++.+
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 875444478888999999999999999998888554 44333333334677788999998 589999999999999988
Q ss_pred EccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCC
Q 001535 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1058)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 736 (1058)
++.......+.-..+.... ++ .............+...++..........+.++..-.+.
T Consensus 363 s~~~e~~~~~l~~~~~~~~-------------~k-------k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKR-------------AK-------KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred hhhHHHHhHhhcccccccc-------------cc-------cccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 8754311111111110000 00 000000111122222333333333444555666666667
Q ss_pred CCCcceeeeeecCCceEEEEecC--CCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeec
Q 001535 737 KPKPWQLAEIVDSGQCRLVTMPE--STDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1058)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~ 814 (1058)
....|+......... .++. .......+.+++.++-|...+.|.+.|.|.+|++..
T Consensus 423 ~~~tW~~~n~~~G~~----~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS------------------- 479 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRH----VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS------------------- 479 (910)
T ss_pred eEEEEeccCcccccE----EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-------------------
Confidence 888888875332221 1111 011346789999999999999999999999987643
Q ss_pred cCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEEC
Q 001535 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1058)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~ 893 (1058)
|...........|..+|+.++...-++.+++++ +|-+++||.....++..+. -...+.++.++. ...++|.+.+
T Consensus 480 ---Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~d 554 (910)
T KOG1539|consen 480 ---GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALD 554 (910)
T ss_pred ---CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcC
Confidence 332222222223899999999999888888887 9999999999988777776 345688899988 7889999999
Q ss_pred CCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcC
Q 001535 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1058)
Q Consensus 894 dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 973 (1058)
|-.|+++|..+.+.++.+.||.+.|++++|||||++|++++.|++|++||+-++.++..+... .+..++.|||
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-------~~~~sls~SP 627 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-------SPCTSLSFSP 627 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-------CcceeeEECC
Confidence 999999999999999999999999999999999999999999999999999999999888777 7889999999
Q ss_pred CCCEEEEEE-C-CeEEEEECCCC
Q 001535 974 DQVRMLVVH-E-TQLAIYDASKM 994 (1058)
Q Consensus 974 d~~~l~~~~-d-~~v~v~d~~~~ 994 (1058)
+|.+||+.+ | ..|++|.=.+.
T Consensus 628 ngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred CCCEEEEEEecCceEEEEEchhH
Confidence 999999974 3 57999975543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=300.56 Aligned_cols=292 Identities=22% Similarity=0.307 Sum_probs=254.1
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
+|++.|+.++..+.+..++.+++.|.++.+|++.......-. ..+.+.||+..|..++.++||++.
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCCceE
Confidence 499999999999998889999999999999999764322111 223489999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeecc--cCCeeE
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EAPVYS 499 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h--~~~v~~ 499 (1058)
++++.|+++++||+.+|+..+ .|.+|...|.+++|++|++ .+++|+.|++|++||.-|.+..++..+ .+.|.+
T Consensus 79 lS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred EeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 999999999999999997655 5889999999999999999 799999999999999778887777655 789999
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeee
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1058)
++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+ +++.+.+||++.++.+..
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEccCCceeEe
Confidence 9999998789999999999999999999999999999999999999999999999988 599999999999999887
Q ss_pred eecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCC-------CCCCceEEeeCCCCEEEEEECCCc
Q 001535 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNG 652 (1058)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~ 652 (1058)
+.... .|.+++|+|+...|+.+. +..|+|||++++..+..+..... ......++|++||..|+.|..|+.
T Consensus 230 l~a~~--~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 230 LEAFD--IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ccCCC--eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 76543 799999999876655554 44699999999988877655432 123457899999999999999999
Q ss_pred EEEEEcc
Q 001535 653 FKILANA 659 (1058)
Q Consensus 653 i~iw~~~ 659 (1058)
|++|.+.
T Consensus 307 irv~qv~ 313 (315)
T KOG0279|consen 307 IRVWQVA 313 (315)
T ss_pred EEEEEee
Confidence 9999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=326.88 Aligned_cols=284 Identities=21% Similarity=0.309 Sum_probs=256.6
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-c
Q 001535 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1058)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~ 482 (1058)
|.+.+|..+.||+|++.||||+-+|.++||+..+...+. +|.+|...|.++.|+|......++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 567899999999999999999999999999999875444 799999999999999983222799999999999999 6
Q ss_pred CCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCC
Q 001535 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1058)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~ 562 (1058)
+..++..+.+|...|..++|+| +|++|.+++.|.+-++||+.+........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 6689999999999999999988 6689999999999999999999999999999999999999999999999985
Q ss_pred CceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeC-CC
Q 001535 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (1058)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 641 (1058)
|..-++||+++|+.+..+.+|.+ .|..+.|+|+|..+++|+.|++++|||++....+.++..| ..-|+.|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc--cchhhheEecccCC
Confidence 78889999999999999999887 8999999999999999999999999999999988888765 44799999999 88
Q ss_pred CEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCC
Q 001535 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1058)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1058)
.+|++++.|++++||...+. .+++.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999987654 222211
Q ss_pred CCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEee
Q 001535 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1058)
Q Consensus 722 ~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~ 792 (1058)
.+|.++|.++.+++|+..+++++.|.++++|.
T Consensus 427 ---------------------------------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ---------------------------------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------------------------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 23889999999999999999999999999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=341.45 Aligned_cols=275 Identities=19% Similarity=0.305 Sum_probs=241.4
Q ss_pred ccCCCCcceEEeec-CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccc--------ccc-----ceeecccccC
Q 001535 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV--------SKP-----FKIWDMAACS 394 (1058)
Q Consensus 329 ~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~--------~~~-----~~~~~~~~~~ 394 (1058)
....+|..+.+++. ....++|+.||+|++ ++|.|-.|..|++|.+...+... ... +. -++.+..
T Consensus 362 ~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~-~~~~D~~ 439 (707)
T KOG0263|consen 362 GRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVD-VDMLDDD 439 (707)
T ss_pred CCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchh-hhhcccc
Confidence 35567888888888 567899999999999 89999999999999998533211 000 00 1222233
Q ss_pred cccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCC
Q 001535 395 LPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1058)
Q Consensus 395 ~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d 474 (1058)
.......+.||+++|..++|+|+.++|++++.|++|++|.+.+..++- .+.||..+|+++.|+|.|- +|||+|.|
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D 514 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHD 514 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCC
Confidence 333445699999999999999999999999999999999999987665 5779999999999999998 89999999
Q ss_pred CcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEE
Q 001535 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1058)
Q Consensus 475 ~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 553 (1058)
++.++|. ....+++.+.+|-+.|.|+.||| +..++++|+.|.+||+||+.++.....+.+|.++|.+++|||+|++|
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred ceeeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 9999999 88899999999999999999998 55899999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001535 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1058)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 617 (1058)
++|+ .++.|.+||+.+++++..+.+|.+ .+.++.|+.+|..|++|+.|.+|++||+..-
T Consensus 593 aSg~----ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 593 ASGD----EDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eecc----cCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9998 599999999999999999999965 8999999999999999999999999998653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=316.54 Aligned_cols=579 Identities=15% Similarity=0.175 Sum_probs=424.1
Q ss_pred EEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCe
Q 001535 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1058)
Q Consensus 350 v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 429 (1058)
..+..-|+.++++.+.+.+..+||.++-..+.- -..+...|+|++=. ..++.+|+.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~--~~~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASD--KDYVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEec--CceEEEecCc-E
Confidence 555555666788888999999999987655431 23477899999864 4455555433 4
Q ss_pred EEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC-Cee----EEeecccCCeeEEeec
Q 001535 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKL----FNFEGHEAPVYSICPH 503 (1058)
Q Consensus 430 i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~-~~~----~~~~~h~~~v~~~~~~ 503 (1058)
|.+|. .|+.++. .+..|.+.|.-+.-- |. .++++..++.+.||+ ..+ .++ ..++...+.|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 66664 4444443 466787777776543 66 688999999999999 553 221 11222233377774 5
Q ss_pred ccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecc
Q 001535 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1058)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1058)
|+.--+.++.|+.+|.+.+|++++++...++......|+++.-+|-=..++.|. .+|.|.+++++.++.+.+|+-.
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~----~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGL----ENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEec----cCceEEEEEcccCcEEEEEEcc
Confidence 554446789999999999999999999999999999999999999888899887 5999999999999999999976
Q ss_pred cCcceeEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCc
Q 001535 584 RKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1058)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1058)
.+ .|+.++|..||+.++ +|+..|.+.+||++..+.+..+.. .|.+.|....|-|....+++++.|+.+++|-..++.
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 44 899999999997655 566779999999998888777652 335578999999999999999999999988666542
Q ss_pred ---cccccccCCCcccccCcccceeee-eccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCC
Q 001535 663 ---RSLRAVENPPFEALRTPIESVALK-VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1058)
Q Consensus 663 ---~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 738 (1058)
+.++...+| ..|..++.|- ..|. .+.+++.|++.
T Consensus 322 g~pR~LR~R~GH-----s~Pp~~irfy~~~g~-------------------------------------~ilsa~~Drt~ 359 (910)
T KOG1539|consen 322 GVPRLLRSRGGH-----SAPPSCIRFYGSQGH-------------------------------------FILSAKQDRTL 359 (910)
T ss_pred CcchheeeccCC-----CCCchheeeeccCcE-------------------------------------EEEecccCcch
Confidence 233333333 3345556554 3333 33555566666
Q ss_pred CcceeeeeecCCceEEE---------Eec-CCCCCcccEEEEEEecC----cceEEEeec-cCeeEEeeeeccccCCCCc
Q 001535 739 KPWQLAEIVDSGQCRLV---------TMP-ESTDTSSKVVRLLYTNS----AVGLLALGS-NGVQKLWKWHRNEQNPSGK 803 (1058)
Q Consensus 739 ~vw~~~~~~~~~~~~~~---------~~~-~~~~~~~~i~~l~~s~~----~~~l~~~~~-dg~v~vw~~~~~~~~~~g~ 803 (1058)
+.+.+........+... ... ...-.-.+|..+++... -..++++.. +...+.|++....
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~------ 433 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT------ 433 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc------
Confidence 65554322111111110 000 00002234555655532 122444443 5667777765321
Q ss_pred ccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEe---cCCCCCeeEEE
Q 001535 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF---MSPPPASTFLA 879 (1058)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~---~~~~~~i~~l~ 879 (1058)
.|...-..-........+++++.++.|++.+.|+ .|.|-+|++++|-...++ ..|.++|+.++
T Consensus 434 -------------~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla 500 (910)
T KOG1539|consen 434 -------------SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA 500 (910)
T ss_pred -------------cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE
Confidence 1221111111111456789999999999999998 899999999999998888 47999999999
Q ss_pred EecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCC
Q 001535 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 959 (1058)
Q Consensus 880 ~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 959 (1058)
... -++.+++++.+|-+.+||..+...+..+. -...++++..+.....++.+..|-.|+++|+.+.+..+.+..
T Consensus 501 ~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g---- 574 (910)
T KOG1539|consen 501 VDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG---- 574 (910)
T ss_pred ecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc----
Confidence 987 78899999999999999999998887776 345678888888888999999999999999999776555543
Q ss_pred CCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCC-CcEEEEeCC
Q 001535 960 GKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-GNIGVFDAD 1037 (1058)
Q Consensus 960 ~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~d-g~i~iw~~~ 1037 (1058)
|. +.+++++|||||+||+++ .|++|++||+.++.++..+.. ..+++++.|||+|.+|||+..| .-|++|.-.
T Consensus 575 -h~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 575 -HG-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred -cc-cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 33 899999999999999996 699999999999999998876 6899999999999999999988 679999654
Q ss_pred C
Q 001535 1038 T 1038 (1058)
Q Consensus 1038 ~ 1038 (1058)
+
T Consensus 649 s 649 (910)
T KOG1539|consen 649 S 649 (910)
T ss_pred h
Confidence 3
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=307.69 Aligned_cols=464 Identities=16% Similarity=0.224 Sum_probs=353.6
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+..|+..|.++.|+|...+++++-.+|.|.||+.++...++ .+.-..-+|.+..|-..-+ ++++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45589999999999999999999999999999999988777 4556788999999998888 899999999999999
Q ss_pred -cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCC-CceEEeeCCCCcEEEEEEcc-CCCEEEEEec
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~ 558 (1058)
.+++.+..|..|.+.|.+++.||.. .++++++.|-+|++||.+.. .+..++.+|.+.|.+++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999865 79999999999999999865 45678999999999999999 6678898885
Q ss_pred cCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEE
Q 001535 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1058)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1058)
|++|++|.+....+..++.+|.. .|+++.+-+.| .+|++|++|.+|+|||..+..++.++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999998 79999997644 7999999999999999999999999986654 799999
Q ss_pred eeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCcccc
Q 001535 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1058)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1058)
|+|.-.++++|+.||+++||+..+- +....+.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997653 11110000
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeecc
Q 001535 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1058)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~ 796 (1058)
.-.++++++..+.+..++.|..+|.+.+=
T Consensus 268 ----------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~----- 296 (794)
T KOG0276|consen 268 ----------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK----- 296 (794)
T ss_pred ----------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE-----
Confidence 23466777777777777777777766541
Q ss_pred ccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCC--cEEEE------ECCCceEEE--
Q 001535 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGG--KISLF------NMMTFKVMT-- 866 (1058)
Q Consensus 797 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg--~i~vw------d~~~~~~~~-- 866 (1058)
.......+..++.|+.+-+.... .+.+- ++..|+.+.
T Consensus 297 ---------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Ls 343 (794)
T KOG0276|consen 297 ---------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLS 343 (794)
T ss_pred ---------------------------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccch
Confidence 11122234445555444332210 11111 233333221
Q ss_pred --EecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001535 867 --TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1058)
Q Consensus 867 --~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~ 944 (1058)
.+..-.--...++-|| +|+++++++ ||...||-.-..+ ..+.+.-....|++|....+.--.++.|+++
T Consensus 344 vKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~-- 414 (794)
T KOG0276|consen 344 VKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF-- 414 (794)
T ss_pred hhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--
Confidence 1111111234578899 999887665 8888888632111 1234556678899998888888888999999
Q ss_pred CCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEE
Q 001535 945 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1058)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t 1024 (1058)
++++..+.+... ....+--.|.+|.+.+++.+++||..+++.++.+... ...+.|+.+|.+++.
T Consensus 415 knfke~ksi~~~----------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai 478 (794)
T KOG0276|consen 415 KNFKEHKSIRPD----------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT------SKHVYWSDNGELVAI 478 (794)
T ss_pred ecceeccccccc----------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEeec------cceeEEecCCCEEEE
Confidence 666655544332 1233334567777788999999999999999998653 468999999999998
Q ss_pred EeCCCcEEEEeC
Q 001535 1025 TFCDGNIGVFDA 1036 (1058)
Q Consensus 1025 ~~~dg~i~iw~~ 1036 (1058)
++.|. .+++.+
T Consensus 479 ~~d~S-fyil~~ 489 (794)
T KOG0276|consen 479 AGDDS-FYILKF 489 (794)
T ss_pred EecCc-eeEEEe
Confidence 88554 444444
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=286.06 Aligned_cols=287 Identities=16% Similarity=0.220 Sum_probs=257.6
Q ss_pred ccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEE
Q 001535 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1058)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 479 (1058)
++|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ +++.|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 3599999999999999999999999999999999998876554 4666788999999999999 8999999999999
Q ss_pred Ee-cCC------CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEcc-CCC
Q 001535 480 WE-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (1058)
Q Consensus 480 wd-~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~-~~~ 551 (1058)
|+ ... +..+.+.+|.+.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99 322 23467899999999999964 3 5789999999999999999999999999999999999999 999
Q ss_pred EEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCC
Q 001535 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1058)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 631 (1058)
.+++++. |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+........
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 9999985 88999999999999999999998 899999999999999999999999999999999999987777778
Q ss_pred CceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCC
Q 001535 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1058)
Q Consensus 632 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1058)
|++++||..|++|..|..|.++.+||.-.+.. .
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-v---------------------------------------------- 308 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-V---------------------------------------------- 308 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccce-E----------------------------------------------
Confidence 99999999999999999999999999754311 0
Q ss_pred CccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEe
Q 001535 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1058)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1058)
..+ .+|.++|.++..+|||..+++++.|.+++||
T Consensus 309 -------------------------------------------g~L---~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 309 -------------------------------------------GVL---AGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred -------------------------------------------EEe---eccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 001 2399999999999999999999999999999
Q ss_pred e
Q 001535 792 K 792 (1058)
Q Consensus 792 ~ 792 (1058)
.
T Consensus 343 ~ 343 (343)
T KOG0286|consen 343 A 343 (343)
T ss_pred C
Confidence 3
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=287.14 Aligned_cols=525 Identities=17% Similarity=0.247 Sum_probs=384.4
Q ss_pred EEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCC
Q 001535 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1058)
Q Consensus 349 ~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 428 (1058)
.+-+-|.|..+... .+.+.+++++...+. .+.||+..|.|++.+||.-.+|+|-..|
T Consensus 70 Nly~lptgE~vyfv---A~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFV---AAVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEe---ccEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCcccc
Confidence 35567777733332 346677887543322 2789999999999999999999875544
Q ss_pred --------eEEEEEecCCCcceeeeeecccccCeEEEEeecC--CCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCe
Q 001535 429 --------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1058)
Q Consensus 429 --------~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v 497 (1058)
.+++||..+-..+. .+......|.+++|++- |..+..+--+.+..+.+|| ..+......+..+..|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 49999987754444 55567778999999985 3322333345667899999 8888777777778888
Q ss_pred eEEeecccCCceEEEEEeeCCeEEEEecCCCCceEE---eeC-CCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC
Q 001535 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~-~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1058)
....|+|... +++++ ...+.+.+|+++.+..... +.. ....|.|++|.++|+.+- + |.+|.|.+|+..+
T Consensus 204 ~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCCC
Confidence 9999999743 45554 4568899999887655432 222 235799999999997654 3 2489999999998
Q ss_pred CceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcE
Q 001535 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1058)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 653 (1058)
.+..+....|.+ .|.+++.-.+|.. ++|+.|..|..|| ..-+.+..++.+...+.|..++-...+ +.+|...+.|
T Consensus 277 ~~~~k~~~aH~g-gv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDG-GVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCC-ceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence 888887777776 7889998888865 4599999999999 555666666666667778777644332 6666665555
Q ss_pred EEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCC
Q 001535 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1058)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1058)
..=.++++.
T Consensus 352 L~Gt~~~~f----------------------------------------------------------------------- 360 (626)
T KOG2106|consen 352 LQGTLENGF----------------------------------------------------------------------- 360 (626)
T ss_pred EEeeecCCc-----------------------------------------------------------------------
Confidence 432322220
Q ss_pred CCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceee
Q 001535 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (1058)
Q Consensus 734 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~ 813 (1058)
.+.. .+|......++.+|+...+++++.|+.+++|+ +. --.|
T Consensus 361 --------------------~~~v---~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~--------------k~~w 402 (626)
T KOG2106|consen 361 --------------------TLTV---QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH--------------KLEW 402 (626)
T ss_pred --------------------eEEE---EecccceeeEEcCCChhheeeccCcceEEEcc-CC--------------ceeE
Confidence 0011 12777888999999999999999999999997 11 0123
Q ss_pred ccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEE
Q 001535 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1058)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 892 (1058)
... ..+++.|+.|.|.| .+|.|. .|...|.|.++...+..-.. ..+++++.|+| +|.+||+|+
T Consensus 403 t~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs 466 (626)
T KOG2106|consen 403 TKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGS 466 (626)
T ss_pred EEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEec
Confidence 221 46778999999999 888888 89999999999666554444 88999999999 999999999
Q ss_pred CCCCEEEEEccCce-eeeEe-cccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceec------------eEEEecC
Q 001535 893 EDSTIHIYNVRVDE-VKSKL-KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK------------SVTIHIP 958 (1058)
Q Consensus 893 ~dg~v~iwd~~~~~-~~~~~-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~------------~~~~~~~ 958 (1058)
.|+.|+||.+..+. ..... +.|..+|+.|.||+|+++|.+-+.|-.|..|....-+... .+-....
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~ 546 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVF 546 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEe
Confidence 99999999997542 22222 2344899999999999999999999999999433322111 1112222
Q ss_pred CCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001535 959 AGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 959 ~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
.+.....+..++-|.+.+++|++ ..|+|++|...-.+.....-...+|++.|++++|+.+...+++.+.|..|..|++
T Consensus 547 g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 547 GGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 23333667777888899999998 5689999998766555444444556999999999999999998889999999986
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=281.15 Aligned_cols=290 Identities=17% Similarity=0.291 Sum_probs=240.0
Q ss_pred eeeeeecccCcceeEEEEcCC-CCEEEEEeCCCcEEEEECCC-----CceeeEeccCCCCCCCceEEeeCCCCEEEEEEC
Q 001535 576 IKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1058)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 649 (1058)
...++.+|.+ .|..++..+. ...+++++.|..+.+|++.. |.++..+.+|.| .|..++.++||++.++++.
T Consensus 7 l~~tl~gh~d-~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH--~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 7 LRGTLEGHTD-WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH--FVSDVVLSSDGNFALSASW 83 (315)
T ss_pred eeeeecCCCc-eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccce--EecceEEccCCceEEeccc
Confidence 4456788887 7888888776 46788899999999998754 566777777666 7999999999999999999
Q ss_pred CCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCc
Q 001535 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (1058)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1058)
|+++++||+.++. ..+.
T Consensus 84 D~~lrlWDl~~g~-~t~~-------------------------------------------------------------- 100 (315)
T KOG0279|consen 84 DGTLRLWDLATGE-STRR-------------------------------------------------------------- 100 (315)
T ss_pred cceEEEEEecCCc-EEEE--------------------------------------------------------------
Confidence 9999999987751 1110
Q ss_pred ccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCccccccc
Q 001535 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1058)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~ 809 (1058)
T Consensus 101 -------------------------------------------------------------------------------- 100 (315)
T KOG0279|consen 101 -------------------------------------------------------------------------------- 100 (315)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCC--CCCeeEEEEecCC--
Q 001535 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQD-- 884 (1058)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~-- 884 (1058)
+.+ |...|.+++|++|.+.+++|+ |.+|++|++... +..++..+ .+.|+|+.|+| +
T Consensus 101 ---------------f~G--H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP-~~~ 161 (315)
T KOG0279|consen 101 ---------------FVG--HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSP-NES 161 (315)
T ss_pred ---------------EEe--cCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcC-CCC
Confidence 111 666777788888888888887 777888887644 33344333 67899999999 5
Q ss_pred CcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCC
Q 001535 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 964 (1058)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 964 (1058)
..+|++++.|++|++||+++.+....+.||++.++.+++||||..+++|+.||.+.+||++.++.+..+... .
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-------~ 234 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-------D 234 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-------C
Confidence 789999999999999999999999999999999999999999999999999999999999999876555433 8
Q ss_pred CceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCC------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001535 965 GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDA------LSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 965 ~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~------~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
.|.+++|+|+.-+|+++.+..|+|||+.++.++..+..... ......+++||+||+.|++|..|+.|++|.+.
T Consensus 235 ~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 89999999999999999888899999999988877765421 12346788999999999999999999999875
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=304.10 Aligned_cols=541 Identities=14% Similarity=0.199 Sum_probs=381.5
Q ss_pred EEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCC---EEEEEeC
Q 001535 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN---YVGVAFT 426 (1058)
Q Consensus 350 v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~~ 426 (1058)
..|.|.+ ++|.| ....|.+||..+.... ..+.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~-------------------t~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIV-------------------TTLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeE-------------------EeccCCccceEEEEEcccccccceEEEccC
Confidence 3456766 46776 4679999998765322 24899999999999999888 8999999
Q ss_pred CCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCe---eEEeecccCCe--eEEe
Q 001535 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK---LFNFEGHEAPV--YSIC 501 (1058)
Q Consensus 427 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v--~~~~ 501 (1058)
|+.|++|.++. +.+..+..+.+|...+.|+.=. -. .......|+++.+||..+.. ...+.-....+ .+++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~a~--~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVVAR--SS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEEee--ee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999983 4455666787877666555432 22 22223789999999953333 22222222222 4455
Q ss_pred ecccCCceEEEEEeeCCeEEEEecCCC--CceEEeeCCCCcEEEEEEccCCC---EEEEEeccCCCCceEEEEeCCCCc-
Q 001535 502 PHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT- 575 (1058)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~i~~i~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 575 (1058)
+.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. ++++++ +|..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555444445667777788888855432 34557889999999999987554 455555 69999999764322
Q ss_pred --------------------ee----------eeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeeEe
Q 001535 576 --------------------IK----------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTST 623 (1058)
Q Consensus 576 --------------------~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~ 623 (1058)
.. ..+.||.+ -|.++.|+|.+..|++++.|.++.+|...+. --+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 11 11237776 8999999999999999999999999987654 233222
Q ss_pred cc---CCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCc
Q 001535 624 DA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1058)
Q Consensus 624 ~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1058)
.. .+........-|+|++..+++-+..|..++|......
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------------------------------------- 349 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------------------------------------- 349 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------------------------------------
Confidence 21 1222346788999999999999999999999832210
Q ss_pred ceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEE
Q 001535 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1058)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 780 (1058)
.|.. .+...+|.+.|.+++|.|.|.+|+
T Consensus 350 ---------------------------------------~w~~-------------~~~iSGH~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 350 ---------------------------------------FWTQ-------------EPVISGHVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred ---------------------------------------ceee-------------ccccccccccceeeeecCCCCEEE
Confidence 1110 011134889999999999999999
Q ss_pred EeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEC
Q 001535 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNM 859 (1058)
Q Consensus 781 ~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d-g~i~vwd~ 859 (1058)
+++.|.+-|++--- |+.. -|.- + ..-..|...++|++|-+....+++|.| ..+++|+.
T Consensus 378 svs~DQTTRlFa~w-------g~q~------~wHE-----i---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 378 SVSLDQTTRLFARW-------GRQQ------EWHE-----I---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred Eeccccceeeeccc-------cccc------ceee-----e---cccccccccceeeehccCCceeeecccceeeeeecC
Confidence 99999999987421 1100 0110 0 011127788888888775455566664 44778765
Q ss_pred C-------------------------------------------Cce---------------------------------
Q 001535 860 M-------------------------------------------TFK--------------------------------- 863 (1058)
Q Consensus 860 ~-------------------------------------------~~~--------------------------------- 863 (1058)
. +|.
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 2 000
Q ss_pred EEEEecCCCCCeeEEEEecCCCcEEEEEECCC-----CEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCc
Q 001535 864 VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (1058)
Q Consensus 864 ~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg-----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 938 (1058)
.+..+.||...|.+++.+| +++++|+++... .|++|+..+...++.+.+|+-.|+.++|||||++|+++|.|++
T Consensus 517 Ev~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred hhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 0123458889999999999 999999998654 6899999999989999999999999999999999999999999
Q ss_pred EEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCC--eeeeeeccCCCCCCCEEEEEE
Q 001535 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKM--ERIRQWTPQDALSAPISCAVY 1015 (1058)
Q Consensus 939 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~--~~~~~~~~~~~~~~~v~~l~~ 1015 (1058)
+.+|........ .+.......|. .-|-+..|+||+.+++++ .|++|.||..... +.+..+.. ..++..|+++++
T Consensus 596 ~sl~~~~~~~~~-e~~fa~~k~Ht-RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~-~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 596 VSLYEVQEDIKD-EFRFACLKAHT-RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC-LKFSLAVTAVAY 672 (764)
T ss_pred EEeeeeecccch-hhhhccccccc-eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch-hccCCceeeEEe
Confidence 999998653321 22222233333 556678899999999996 6999999999887 55555322 234889999998
Q ss_pred ccC-----CCEEEEEeCCCcEEEEeCC
Q 001535 1016 SCN-----SQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 1016 s~d-----g~~l~t~~~dg~i~iw~~~ 1037 (1058)
.|- +..+++|-+.|.|.+|...
T Consensus 673 ~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eccccccccceEEEEecccEEEEEecc
Confidence 872 2267789999999999965
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=308.02 Aligned_cols=554 Identities=17% Similarity=0.235 Sum_probs=380.5
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
.+..|..++|+|...+ +.++-.+|.|++||.+-+..+.. +.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 4668999999999997 56667899999999999888764 889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEe
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 501 (1058)
+|++|-.|+||+.++.+++. ++.||-+.|..+.|++.-. +++|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987665 7889999999999999888 899999999999999 99999999999999999999
Q ss_pred ecccCCceEEEEEeeCCeEEEEecCCCC-----------------------------ceEEeeCCCCcEEEEEEccCCCE
Q 001535 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYSADGSR 552 (1058)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~i~~i~~s~~~~~ 552 (1058)
|+|.. ..+++++.|.+||+||+.... ....+.+|...|+-++|.|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99976 589999999999999984210 12246678889999999999999
Q ss_pred EEEEeccCCCCceEEEEeCCCCc--eeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCC
Q 001535 553 LFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 630 (1058)
+++|+ .|..|++|.+...+ .+.+..+|.+ .|.++-|+|..+.+++.|+|++|+|||+...+.+.++.... .
T Consensus 221 iVSG~----DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren--d 293 (1202)
T KOG0292|consen 221 IVSGA----DDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN--D 293 (1202)
T ss_pred EEecC----CcceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccC--C
Confidence 99998 48899999987654 4567788888 89999999999999999999999999999999999886543 3
Q ss_pred CCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCC
Q 001535 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1058)
Q Consensus 631 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 710 (1058)
..++++.+|..++++.|-+.| +.+|.++.... . .+++ ++
T Consensus 294 RFW~laahP~lNLfAAgHDsG-m~VFkleRErp-a-----------------~~v~--~n-------------------- 332 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHDSG-MIVFKLERERP-A-----------------YAVN--GN-------------------- 332 (1202)
T ss_pred eEEEEEecCCcceeeeecCCc-eEEEEEcccCc-e-----------------EEEc--CC--------------------
Confidence 689999999999888776554 55666643211 0 0111 11
Q ss_pred CCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeec--cCee
Q 001535 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS--NGVQ 788 (1058)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--dg~v 788 (1058)
.++..- +..|+-+|+.+..... . ..+.........+.++.++|....++.++. +|..
T Consensus 333 -----------------~LfYvk-d~~i~~~d~~t~~d~~-v--~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y 391 (1202)
T KOG0292|consen 333 -----------------GLFYVK-DRFIRSYDLRTQKDTA-V--ASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEY 391 (1202)
T ss_pred -----------------EEEEEc-cceEEeeeccccccce-e--EeccCCCcccCCcceeeeccccCeEEEEeccCCCeE
Confidence 111111 4666777776522211 1 122211113467889999998776555532 4666
Q ss_pred EEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEe
Q 001535 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTF 868 (1058)
Q Consensus 789 ~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~ 868 (1058)
.++.+..... |... + .... ......++-.+.++-.+..-++..+.+-++.. +..+.+
T Consensus 392 ~L~~ipk~~~---~~~~------------~---~~~~----k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl 448 (1202)
T KOG0292|consen 392 ELVQIPKDSD---GVSD------------G---KDVK----KGTGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKL 448 (1202)
T ss_pred EEEEecCccc---ccCC------------c---hhhh----cCCCCceEEEEecceEEEEecCcceEEecccc-hhhhcc
Confidence 6665543211 0000 0 0000 11222333333332222222244455555443 222233
Q ss_pred cCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001535 869 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948 (1058)
Q Consensus 869 ~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~ 948 (1058)
... ..+..+.+.. .|.+|+. ....|.++|+...+.+..+. ...|.-+.||+|..+++--+. .+|.|.|.+- +
T Consensus 449 ~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL-~ 520 (1202)
T KOG0292|consen 449 LLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSK-HTITIADKKL-E 520 (1202)
T ss_pred cCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhccc-ceEEEEecch-h
Confidence 221 2344555555 5655543 34579999999988877775 467889999999988887664 4688887653 1
Q ss_pred eeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCC--eeeeeeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001535 949 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM--ERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1058)
Q Consensus 949 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~ 1026 (1058)
.+.++ |..-.|.+-+|..+|-++.+..+.-- |-+.+| ..++.+ ..++.-.+. .|..+++-.
T Consensus 521 l~~si-------hEtiriksgawde~gVfiYtT~nHik--Yal~~GD~GIikTL------d~~iyitkv--~gn~V~cl~ 583 (1202)
T KOG0292|consen 521 LLCSI-------HETIRIKSGAWDEDGVFIYTTLNHIK--YALENGDSGIIKTL------DKPIYITKV--KGNKVFCLN 583 (1202)
T ss_pred heecc-------hheeEeeeceeccCceEEEEehhhhh--hhhccCCcceEEec------ccceEEEEe--eCCEEEEEe
Confidence 11111 11155677889888888877543211 111111 123332 122332222 366777777
Q ss_pred CCCcEEEEeCCCCe
Q 001535 1027 CDGNIGVFDADTLR 1040 (1058)
Q Consensus 1027 ~dg~i~iw~~~~~~ 1040 (1058)
.|+.+.+.+++.-+
T Consensus 584 rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 584 RDGEIECLTIDPTE 597 (1202)
T ss_pred cCCCeEEEeechHH
Confidence 77877777776543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=269.54 Aligned_cols=295 Identities=15% Similarity=0.226 Sum_probs=251.3
Q ss_pred eEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc--eeeeeecccCc
Q 001535 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKK 586 (1058)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 586 (1058)
-+|++++.|.+||+|...++.+..++......|+.+.+.||++.|++++ ...|++||+++++ ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5899999999999999999999999999999999999999999999987 7789999999875 6899999987
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccc
Q 001535 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1058)
Q Consensus 587 ~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1058)
.|.++.|..+|+++++|++||+++|||++.......+.. ..+|+++..+|+..-|++|..+|.|++||+.+....-.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 799999999999999999999999999998655555543 45899999999999999999999999999976511000
Q ss_pred cccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeee
Q 001535 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (1058)
Q Consensus 667 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~ 746 (1058)
T Consensus 162 -------------------------------------------------------------------------------- 161 (311)
T KOG0315|consen 162 -------------------------------------------------------------------------------- 161 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeecc
Q 001535 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 826 (1058)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1058)
.+|+ ....|.++.+.|||..++++...|...+|++-.... .+.......++
T Consensus 162 ---------liPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~~ 212 (311)
T KOG0315|consen 162 ---------LIPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKFQ 212 (311)
T ss_pred ---------cCCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhhee
Confidence 0111 335788999999999999999999999999754211 00000011123
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCc-eEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccC
Q 001535 827 GVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1058)
Q Consensus 827 ~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~ 904 (1058)
. |...+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+...+||. |++||++|+.|+.+++|++..
T Consensus 213 a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 213 A--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred c--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeeccccc
Confidence 3 899999999999999999998 899999999988 77778889999999999999 999999999999999999999
Q ss_pred ceeeeEecccCCCeeEEEEc
Q 001535 905 DEVKSKLKGHQKRITGLAFS 924 (1058)
Q Consensus 905 ~~~~~~~~~h~~~V~~l~~s 924 (1058)
++.+..+.+|..+..|++..
T Consensus 290 ~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 290 GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceeeecCCcccccEEEEee
Confidence 99999999999888887764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=273.15 Aligned_cols=284 Identities=15% Similarity=0.254 Sum_probs=237.9
Q ss_pred CeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 001535 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1058)
Q Consensus 357 ~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~ 436 (1058)
.-+||+++.|.+|++|...+|.+..+ +....+.|+.+...||++.||+++.- .|++||+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEcc
Confidence 34899999999999999999998764 44467899999999999999998755 59999999
Q ss_pred CCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEee
Q 001535 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (1058)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 516 (1058)
+++.- ...++.+|...|+++.|..||+ .+++||+||+++|||......++...|.++|+++.++|.. .-|++|..
T Consensus 70 S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ--teLis~dq 144 (311)
T KOG0315|consen 70 SNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ--TELISGDQ 144 (311)
T ss_pred CCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc--ceEEeecC
Confidence 98764 4557999999999999999999 8999999999999993334445555688999999998854 67999999
Q ss_pred CCeEEEEecCCCCceEEee-CCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC------ceeeeeecccCccee
Q 001535 517 DGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TIKRTYAGFRKKSNG 589 (1058)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~-~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~i~ 589 (1058)
+|.|++||+........+. .....|.++++.|||.+++.+. ..|..++|++-+. +++..++.|.. .+.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il 219 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-HIL 219 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-eEE
Confidence 9999999998876655443 3445899999999999999887 4889999998764 35566777777 678
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCcccccccc
Q 001535 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1058)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1058)
.+.++|++++|++++.|.+++||+.++. ....+...+|..-+..++||.||++|++|+.|+.+++|++..+ +..+...
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~ 297 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQ 297 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecC
Confidence 8899999999999999999999999988 4444445566678999999999999999999999999999988 4444444
Q ss_pred CCC
Q 001535 670 NPP 672 (1058)
Q Consensus 670 ~~~ 672 (1058)
+|.
T Consensus 298 gh~ 300 (311)
T KOG0315|consen 298 GHH 300 (311)
T ss_pred Ccc
Confidence 443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=301.26 Aligned_cols=284 Identities=21% Similarity=0.321 Sum_probs=250.8
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+ .+|+ .++..|..+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence 4568999999999996 89999999999999743 2222 24778999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeeccc-ccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEE
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 500 (1058)
+|+.+|.|++|+..-.. ++ .+.+| ...|++++|+|... .|+++++||+|+||| ...+....+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987543 22 24454 48999999999888 899999999999999 8888888999999999999
Q ss_pred eecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeee
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1058)
+|+|.. .++++++.|..|++||.+++.++.++..|...|..+.|++++++|++++ .|..++++|+++.+.+.++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc----CCceEEEEehhHhHHHHHh
Confidence 999965 6999999999999999999999999999999999999999999999998 4889999999999999999
Q ss_pred ecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEcc
Q 001535 581 AGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 581 ~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
++|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999954 6777799999999999986666666543 566789999999999999999999999999754
Q ss_pred C
Q 001535 660 I 660 (1058)
Q Consensus 660 ~ 660 (1058)
.
T Consensus 381 r 381 (464)
T KOG0284|consen 381 R 381 (464)
T ss_pred C
Confidence 3
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=292.45 Aligned_cols=292 Identities=20% Similarity=0.333 Sum_probs=266.8
Q ss_pred CcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEE
Q 001535 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1058)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1058)
|.....+.+|...|+.+-|+|+-. ++++++.|++|++||..+|+.... ++||++.|.+++
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~ 157 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDIS 157 (406)
T ss_pred CCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEE
Confidence 445566677999999999999987 799999999999999999998654 999999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeec
Q 001535 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1058)
Q Consensus 414 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~ 492 (1058)
|+..|++||+++.|-.+++||.++. .+++..+.+|+..|.++.|-|.|. ++++++.|.+|+.|+ .+|.++.++.+
T Consensus 158 ~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 158 FDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPG 233 (406)
T ss_pred EecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccC
Confidence 9999999999999999999999873 334446789999999999999998 899999999999999 99999999999
Q ss_pred ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCC---------------CEEEEEe
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG---------------SRLFSCG 557 (1058)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~---------------~~l~~~~ 557 (1058)
|...|..++. ..||.++++++.|.++++|-+.+..+...+..|.++|.+++|.|.. .++.+++
T Consensus 234 h~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 234 HSEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred chHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 9999999987 5588999999999999999999999999999999999999997742 3666666
Q ss_pred ccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEe
Q 001535 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1058)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1058)
.|+.|++||+.++.++.++.+|.+ -|..++|+|.|++|+++.+|+++++||+.++++...+..+.+ -++++.|
T Consensus 312 ----rDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDf 384 (406)
T KOG0295|consen 312 ----RDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDF 384 (406)
T ss_pred ----ccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEec
Confidence 499999999999999999999998 899999999999999999999999999999999999998777 6899999
Q ss_pred eCCCCEEEEEECCCcEEEEEc
Q 001535 638 SKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 638 s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
+.+..++++|+-|.++++|..
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 999999999999999999964
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=294.86 Aligned_cols=335 Identities=16% Similarity=0.315 Sum_probs=278.5
Q ss_pred CCCcceEEEEECCCCC-EEEEEeCCCeEEEEEecCC--Cc-----ceeeeeecc----cccCeEEEEeecCCCeeEEEEE
Q 001535 404 DVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGS--ND-----LRQHSQIDA----HVGAVNDLAFAYPNKLLCVVTC 471 (1058)
Q Consensus 404 ~h~~~V~~l~~spdg~-~las~~~dg~i~iwd~~~~--~~-----~~~~~~l~~----h~~~v~~l~~s~d~~~~~l~s~ 471 (1058)
+|..+|.+.+|+|-.. .+++|+.|-+.++|++... .. ++......+ ....|++++|+.+|. .||+|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLATG 253 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEEEe
Confidence 3999999999999655 9999999999999998741 11 111101111 235799999999999 89999
Q ss_pred eCCCcEEEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCC
Q 001535 472 GDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1058)
Q Consensus 472 ~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~ 551 (1058)
+.||.+++|+..|..+.++..|.++|.++.|+ ..|.+|++++.||++.+||.-++.....+..+..+...+.|-.+..
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 99999999999999999999999999999995 4778999999999999999999998888888888777788866654
Q ss_pred EEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCC
Q 001535 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1058)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 631 (1058)
+++++ .++.|+++.+....++.++.+|++ .|.++.|+|.+..|++++.|++++||+.........+..|. ..
T Consensus 332 -F~ts~----td~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs--ke 403 (524)
T KOG0273|consen 332 -FATSS----TDGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS--KE 403 (524)
T ss_pred -EeecC----CCceEEEEEecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc--cc
Confidence 44444 399999999999999999999887 89999999999999999999999999987666655555433 35
Q ss_pred CceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCC
Q 001535 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1058)
Q Consensus 632 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1058)
|..+.|+|+|... |+
T Consensus 404 i~t~~wsp~g~v~-----------~n------------------------------------------------------ 418 (524)
T KOG0273|consen 404 IYTIKWSPTGPVT-----------SN------------------------------------------------------ 418 (524)
T ss_pred eeeEeecCCCCcc-----------CC------------------------------------------------------
Confidence 6666666654210 00
Q ss_pred CccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEe
Q 001535 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1058)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1058)
T Consensus 419 -------------------------------------------------------------------------------- 418 (524)
T KOG0273|consen 419 -------------------------------------------------------------------------------- 418 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecC
Q 001535 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 870 (1058)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~ 870 (1058)
+ .++..+++++ |++|++||+..+.++..|..
T Consensus 419 -----------------------~-------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~k 450 (524)
T KOG0273|consen 419 -----------------------P-------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLMK 450 (524)
T ss_pred -----------------------C-------------------------cCCceEEEeecCCeEEEEEccCCceeEeecc
Confidence 0 1223445555 88999999999999999999
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001535 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945 (1058)
Q Consensus 871 ~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~ 945 (1058)
|..+|.+++||| +|+++|+|+.||.|.+|+.++++..+.+.+. +.|..|+|+.+|.+|..+-.|+.+++-|+.
T Consensus 451 H~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 451 HQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999 9999999999999999999999999998754 669999999999999999999999998874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=280.35 Aligned_cols=338 Identities=17% Similarity=0.243 Sum_probs=286.9
Q ss_pred eecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEe
Q 001535 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1058)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1058)
+|..|++.|.+++.+|+.+ +++||+.|....+|+ .+|..+..+.+|.+.|+++.|+. +|.+|++|+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 6889999999999999777 899999999999999 99999999999999999999966 779999999999999999
Q ss_pred cCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEe
Q 001535 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1058)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 604 (1058)
..++.....+......+.-+.|+|.+..|++|+ .|+.+.+|.+.++...+.+.+|.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~----~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS----TDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeec----CCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 999999998887788899999999999999988 499999999999999999999887 889999999999999999
Q ss_pred CCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCccccee
Q 001535 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1058)
Q Consensus 605 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 684 (1058)
.||+|++||..++.++..+....+ ....++.++..+..++.|+.++.+++-+..+++...
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~------------------- 269 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN------------------- 269 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEE-------------------
Confidence 999999999999999999876553 357899999999999999999988887655441100
Q ss_pred eeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCc
Q 001535 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTS 764 (1058)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 764 (1058)
..+
T Consensus 270 -~~n---------------------------------------------------------------------------- 272 (399)
T KOG0296|consen 270 -CNN---------------------------------------------------------------------------- 272 (399)
T ss_pred -ecC----------------------------------------------------------------------------
Confidence 000
Q ss_pred ccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCC
Q 001535 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1058)
Q Consensus 765 ~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1058)
+.+..+..... .....|.++.+|..-.
T Consensus 273 ---------~~~~~l~~~~e--------------------------------------------~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 273 ---------GTVPELKPSQE--------------------------------------------ELDESVESIPSSSKLP 299 (399)
T ss_pred ---------CCCccccccch--------------------------------------------hhhhhhhhcccccccc
Confidence 00000000000 0123344555566667
Q ss_pred EEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEE
Q 001535 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (1058)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 923 (1058)
+.|+|+ ||+|.|||+...++...+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||..+|.++++
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence 889999 9999999999877766554 888899999986 568999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECC
Q 001535 924 STSLNILVSSGADAQLCVWSID 945 (1058)
Q Consensus 924 s~d~~~l~s~s~Dg~i~iwd~~ 945 (1058)
+|++++++|+|.|++.+||++.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999874
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=299.35 Aligned_cols=506 Identities=16% Similarity=0.272 Sum_probs=357.4
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+...+..|..++|+|..-+++++-..|.|++||..-+..+. .+..|.++|..++|+|++. +++||++|..|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44457789999999999999999999999999999988776 5889999999999999999 999999999999999
Q ss_pred -cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
.+.+++.++.||-+.|..+.||+. -.++++++.|.+|++|++.+..+...+++|.+.|.|..|.|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 999999999999999999999874 479999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEeCCCCc-----------------------------eeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEE
Q 001535 561 DGDSFLVEWNESEGT-----------------------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 611 (1058)
|.+|++||+..-+ ....+.||.. .|+-++|+|.-..+++|++|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 8999999985211 1234556765 7888999999999999999999999
Q ss_pred EECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeecccc
Q 001535 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1058)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 691 (1058)
|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+... ..++.++... ...+.++..|..++
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrren-----dRFW~laahP~lNL 306 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRREN-----DRFWILAAHPELNL 306 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccC-----CeEEEEEecCCcce
Confidence 99987766555556678889999999999999999999999999999765 2233332211 22455666666555
Q ss_pred ccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEE
Q 001535 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1058)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1058)
+ .++.|+.+.+|.+.. ..+ +.+
T Consensus 307 f--------------------------------------AAgHDsGm~VFkleR------------------Erp--a~~ 328 (1202)
T KOG0292|consen 307 F--------------------------------------AAGHDSGMIVFKLER------------------ERP--AYA 328 (1202)
T ss_pred e--------------------------------------eeecCCceEEEEEcc------------------cCc--eEE
Confidence 4 334445556666541 111 122
Q ss_pred EecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccC-CCCCCCeeEEEEecCCCEEEEEe
Q 001535 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG-VNLEEAVPCIALSKNDSYVMSAT 850 (1058)
Q Consensus 772 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~~~ 850 (1058)
++ +..|+-.- |..|+.+|+.+..-.+ ... +.. .....++.++.++|....+..++
T Consensus 329 v~--~n~LfYvk-d~~i~~~d~~t~~d~~-------------------v~~--lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 329 VN--GNGLFYVK-DRFIRSYDLRTQKDTA-------------------VAS--LRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred Ec--CCEEEEEc-cceEEeeeccccccce-------------------eEe--ccCCCcccCCcceeeeccccCeEEEEe
Confidence 22 22233333 6677777765421100 000 111 01346788999999877666664
Q ss_pred ---CCcEEEEECCCceEEEE---ecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEc
Q 001535 851 ---GGKISLFNMMTFKVMTT---FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (1058)
Q Consensus 851 ---dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 924 (1058)
.|.-.++.+.+...... -........++-.+. +++.+.--.+..+.+-++... ..+.+... ..+..+.+.
T Consensus 385 ~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nrfavl~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~a 460 (1202)
T KOG0292|consen 385 NLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NRFAVLDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYA 460 (1202)
T ss_pred ccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cceEEEEecCcceEEecccch-hhhcccCc-ccccceeec
Confidence 35555555543211000 000112233444433 233333333445555554432 22222211 234566677
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCC
Q 001535 925 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQD 1004 (1058)
Q Consensus 925 ~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~ 1004 (1058)
.+|.+|+.. ...|.++|+...+....+.. ..+..+.||+|..+++.-+...|.+++-+ .+.+..+. .
T Consensus 461 g~g~lll~~--~~~v~lfdvQq~~~~~si~~--------s~vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sih--E 527 (1202)
T KOG0292|consen 461 GTGNLLLRS--PDSVTLFDVQQKKKVGSIKV--------SKVKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIH--E 527 (1202)
T ss_pred cCccEEEEc--CCeEEEEEeecceEEEEEec--------CceeEEEEcCccchhhhcccceEEEEecc-hhheecch--h
Confidence 777776642 44699999998776555543 67899999999999998888889998854 22333222 1
Q ss_pred CCCCCEEEEEEccCCCEEEEEe
Q 001535 1005 ALSAPISCAVYSCNSQLVFATF 1026 (1058)
Q Consensus 1005 ~~~~~v~~l~~s~dg~~l~t~~ 1026 (1058)
.-+|-+-+|..+|-++.+..
T Consensus 528 --tiriksgawde~gVfiYtT~ 547 (1202)
T KOG0292|consen 528 --TIRIKSGAWDEDGVFIYTTL 547 (1202)
T ss_pred --eeEeeeceeccCceEEEEeh
Confidence 45677777887777776654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=281.18 Aligned_cols=291 Identities=18% Similarity=0.278 Sum_probs=259.2
Q ss_pred ceEEee-cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEE
Q 001535 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1058)
Q Consensus 336 ~~~~~~-~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1058)
.+.+.+ +|.+.|.|+++.|...+ +++|+.|++|+|||+.+|+...+ +.||-..|..+++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~vav 201 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVAV 201 (460)
T ss_pred eehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeeee
Confidence 344444 49999999999999885 89999999999999999987654 8999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecc
Q 001535 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1058)
Q Consensus 415 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h 493 (1058)
|+--.||++++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++||| .+...+..+.||
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH 276 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGH 276 (460)
T ss_pred cccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCC
Confidence 9999999999999999999999998887 5779999999999999888 899999999999999 999999999999
Q ss_pred cCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC
Q 001535 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1058)
..+|.++.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++.+|....+++++ ...|+.|++..
T Consensus 277 ~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p~ 349 (460)
T KOG0285|consen 277 TNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLPE 349 (460)
T ss_pred CCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCCc
Confidence 9999999986643 5799999999999999999999999999999999999999999999987 55799999999
Q ss_pred CceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEec---cCC---CCCCCceEEeeCCCCEEEEE
Q 001535 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AEG---GLPNLPRLRFSKEGNLLAVT 647 (1058)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~~~~l~~~ 647 (1058)
|..+..+.+|.. .+++++...|+ .+++|+++|.+.+||.++|...+... ..+ ....|.+.+|...|..|++|
T Consensus 350 g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ 427 (460)
T KOG0285|consen 350 GEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITG 427 (460)
T ss_pred cchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEec
Confidence 999999999887 88889887764 88999999999999999987655441 222 23358899999999999999
Q ss_pred ECCCcEEEEEccC
Q 001535 648 TADNGFKILANAI 660 (1058)
Q Consensus 648 ~~dg~i~iw~~~~ 660 (1058)
..|.+|++|.-..
T Consensus 428 eadKtIk~~keDe 440 (460)
T KOG0285|consen 428 EADKTIKMYKEDE 440 (460)
T ss_pred cCCcceEEEeccc
Confidence 9999999997543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=270.84 Aligned_cols=289 Identities=17% Similarity=0.234 Sum_probs=248.3
Q ss_pred ceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEEC
Q 001535 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1058)
Q Consensus 336 ~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1058)
..+...+|++.|..+.|+|+|. ++|+|+.|..|.+|++..... + .-.+++|.+.|..+.|.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdce----N--------------~~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCE----N--------------FWVLKGHSGAVMELHGM 99 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEecccccc----c--------------eeeeccccceeEeeeec
Confidence 3445567999999999999999 799999999999999754221 1 12378999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeeccc
Q 001535 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1058)
Q Consensus 416 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~ 494 (1058)
+|+..|++++.|.+|+.||+++|+..+ .+.+|..-|+++.-+.-|.. ++.||+.|+++++|| .+...++++. ..
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~k 174 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NK 174 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cc
Confidence 999999999999999999999999877 57799999999997766776 789999999999999 7777776664 34
Q ss_pred CCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC
Q 001535 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1058)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1058)
-.++++.|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+.+. +..+++||++..
T Consensus 175 yqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~ 248 (338)
T KOG0265|consen 175 YQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPF 248 (338)
T ss_pred eeEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEeccc
Confidence 5688888854 5568999999999999999999999999999999999999999999999886 899999998753
Q ss_pred ----ceeeeeecccCc---ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEE
Q 001535 575 ----TIKRTYAGFRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1058)
Q Consensus 575 ----~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 647 (1058)
+++..+.++... ....++|+|++..+-+|+.|..+++||......+..+. +|...|++++|+|...++.++
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp--Gh~gsvn~~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP--GHYGSVNEVDFHPTEPIILSC 326 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC--CcceeEEEeeecCCCcEEEEe
Confidence 457777776431 23457899999999999999999999998888888876 556689999999999999999
Q ss_pred ECCCcEEEE
Q 001535 648 TADNGFKIL 656 (1058)
Q Consensus 648 ~~dg~i~iw 656 (1058)
+.|.+|++=
T Consensus 327 ~sdk~i~lg 335 (338)
T KOG0265|consen 327 SSDKTIYLG 335 (338)
T ss_pred ccCceeEee
Confidence 999999873
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=271.13 Aligned_cols=328 Identities=14% Similarity=0.191 Sum_probs=273.9
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
|..|+++|.+++.+|+.+++|||+.|....+|++.+|+.+. .+.+|+..|+++.|+.||. +|+||+-+|.|+||.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 77899999999999999999999999999999999998554 6889999999999999999 899999999999999
Q ss_pred -cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
.+|.....+...-..+.-+.|||. +.+|+.|+.||.+-+|.+........+.+|..++++=.|.|||+.++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 888888888766677888999984 589999999999999999998888899999999999999999999999984
Q ss_pred CCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccC------CCCCCCce
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE------GGLPNLPR 634 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~v~~ 634 (1058)
++.|++|+..+++++.++....+....++.++..+..++.|+.++.+++-+..+|+.+...... ++...+.+
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 9999999999999999988766667888999999999999999999999999998887766521 11112222
Q ss_pred ---EEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCC
Q 001535 635 ---LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1058)
Q Consensus 635 ---v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1058)
+.++..-.+.|+|+-||+|.|||+...
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 333333445555555666666654321
Q ss_pred CccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEe
Q 001535 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1058)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1058)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecC
Q 001535 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 870 (1058)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~ 870 (1058)
.. + ... .|...|..+.|-+ ..+|++++ +|.|+.||.++|+++.++.+
T Consensus 319 -----~~----------------------R--~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 319 -----TL----------------------R--HIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred -----hh----------------------h--eec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 00 0 000 1677788888888 45666665 99999999999999999999
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCCEEEEEcc
Q 001535 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1058)
Q Consensus 871 ~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~ 903 (1058)
|...|.+++++| +.+++++++.|++.+||++.
T Consensus 367 H~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999 99999999999999999864
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=257.60 Aligned_cols=288 Identities=19% Similarity=0.320 Sum_probs=235.5
Q ss_pred EeecCCCcEEEEEeecC-CCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC
Q 001535 339 VSLHQGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1058)
Q Consensus 339 ~~~~h~~~V~~v~~sp~-g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1058)
.+-+|++.|+.++|+|- |. +||+|+.|..|+||+...+..... ...+-.+|+..|.+++|+|.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence 34459999999999999 88 899999999999999875332211 11224579999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC---CeeEEeecc
Q 001535 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGH 493 (1058)
Q Consensus 418 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~---~~~~~~~~h 493 (1058)
|++||+|+.|.++.||.-..++ .....++.||...|.+++|+++|. +||+++.|++|-||. .++ .++..++.|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999999999877543 445668999999999999999999 899999999999999 433 456889999
Q ss_pred cCCeeEEeecccCCceEEEEEeeCCeEEEEecCCC---CceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEe
Q 001535 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1058)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1058)
...|..+.|||+. .+|++++.|++|++|+-... ....++.++...|.+++|++.|..|++++ .|+.+++|-
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s----dD~tv~Iw~ 223 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS----DDGTVSIWR 223 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec----CCcceEeee
Confidence 9999999999976 59999999999999976632 34667888888999999999999999998 599999998
Q ss_pred CCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eeeEeccCCCCCCCceEEeeCC-CCE
Q 001535 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------ILTSTDAEGGLPNLPRLRFSKE-GNL 643 (1058)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~-~~~ 643 (1058)
.. ..+.+.+...+..+.|. ...|++++.|+.|++|.-.... .+.. ....|...|++++|+|. ..+
T Consensus 224 ~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 224 LY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred ec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCc
Confidence 55 33444444578888888 5689999999999999766431 1111 12234558999999994 789
Q ss_pred EEEEECCCcEEEEEcc
Q 001535 644 LAVTTADNGFKILANA 659 (1058)
Q Consensus 644 l~~~~~dg~i~iw~~~ 659 (1058)
|++|++||.+++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=255.32 Aligned_cols=287 Identities=17% Similarity=0.232 Sum_probs=246.5
Q ss_pred CcceEEeec-CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEE
Q 001535 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1058)
Q Consensus 334 ~~~~~~~~~-h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1058)
|......+. |.++|.++.|+-||+| ..+++.|.+|++||...|..+++ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 343344444 8999999999999996 56666899999999999988865 88999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe---cCCCeeEE
Q 001535 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLFN 489 (1058)
Q Consensus 413 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd---~~~~~~~~ 489 (1058)
+.+.|+..+++|+.|..|.+||+.+|+.++ .+.+|.+.|+.+.|+.+.. .+++|+.|.++++|| .+-++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999887 5889999999999999998 899999999999999 45578889
Q ss_pred eecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEE
Q 001535 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1058)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1058)
+....+.|.++.+ .+..|++|+.||+++.||++.+.... ..-+++|++++|++|++..++++. ++.+++.
T Consensus 141 ldea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 9888999999987 34679999999999999998765443 445678999999999999998885 8999999
Q ss_pred eCCCCceeeeeecccCcce-eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEE
Q 001535 570 NESEGTIKRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1058)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 648 (1058)
|-.+|++++.+.+|.+... ..++++.....+++|++||.|++||+.+...+..+..++. ..|..++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEec
Confidence 9999999999999987432 2367788888999999999999999999999999887654 2478999999887777776
Q ss_pred CCCcEEEEE
Q 001535 649 ADNGFKILA 657 (1058)
Q Consensus 649 ~dg~i~iw~ 657 (1058)
.. .+..|-
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 54 445554
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=271.03 Aligned_cols=246 Identities=17% Similarity=0.289 Sum_probs=227.2
Q ss_pred ccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEE
Q 001535 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1058)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 479 (1058)
.++.+|.+.|.|+++.|.+.++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. ++++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 4688999999999999999999999999999999999997554 7889999999999999888 8999999999999
Q ss_pred Ee-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEec
Q 001535 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 558 (1058)
|| ...+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++......+.+|..+|.++.+.|-...+++++.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99 8889999999999999999999865 68999999999999999999999999999999999999998889999985
Q ss_pred cCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEee
Q 001535 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1058)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1058)
|++|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+..+ ...|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeec
Confidence 99999999999999999998887 89999999999999998887 6999999999999887644 5578999988
Q ss_pred CCCCEEEEEECCCcEEEEEccCC
Q 001535 639 KEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
.|+ ++++|+++|.+.+||.+++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 875 7889999999999999887
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=268.31 Aligned_cols=491 Identities=16% Similarity=0.202 Sum_probs=349.5
Q ss_pred cceEEeecCCCcEEEEEeecCCCeEEEEEeccc--------eEEEEEccCCCccccccceeecccccCcccccccccCCC
Q 001535 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1058)
Q Consensus 335 ~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1058)
......++|.+.|.|++.+||-- .+|+|-..| .|+|||..+-..+. ++..-.
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~ 154 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFD 154 (626)
T ss_pred hhcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeee-------------------eecccc
Confidence 35566788999999999999976 578775544 58889865543332 244456
Q ss_pred cceEEEEECC--CCCEEEEE--eCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-
Q 001535 407 ISVSRVAWSP--DGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1058)
Q Consensus 407 ~~V~~l~~sp--dg~~las~--~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd- 481 (1058)
..|.|++||+ .|.+|+.. +.+..+.|||+..+..... ...-...|....|.|.+.. ++++++ .+.+.+|+
T Consensus 155 ~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~ 229 (626)
T KOG2106|consen 155 RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTL 229 (626)
T ss_pred ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEc
Confidence 7899999999 35555554 3456689999998776553 4456677999999999886 566666 78999999
Q ss_pred cCCCeeEE---eecc-cCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEe
Q 001535 482 LSGRKLFN---FEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 482 ~~~~~~~~---~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 557 (1058)
..+....+ +..+ ...|.|++|.+++ -+++|..+|.|.+|+..+.........|.+.|.+++...+|.++- ++
T Consensus 230 ~~~~l~k~~~~fek~ekk~Vl~v~F~eng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-Gg 305 (626)
T KOG2106|consen 230 RGGSLVKRQGIFEKREKKFVLCVTFLENG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GG 305 (626)
T ss_pred cCCceEEEeeccccccceEEEEEEEcCCC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cC
Confidence 55544432 3332 3568999996644 378999999999999877666555558999999999999997666 66
Q ss_pred ccCCCCceEEEEeCCCCceeeeeeccc-CcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEE
Q 001535 558 TSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1058)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1058)
+|..|..|| ..-+.++..+... .+.++.++-. +.-|++|...+.|..=.++++-.+... +|......++
T Consensus 306 ----KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~--~~di~vGTtrN~iL~Gt~~~~f~~~v~---gh~delwgla 375 (626)
T KOG2106|consen 306 ----KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEG--KGDILVGTTRNFILQGTLENGFTLTVQ---GHGDELWGLA 375 (626)
T ss_pred ----ccceEEecc-ccccccccccCchhcCCeeEEecC--CCcEEEeeccceEEEeeecCCceEEEE---ecccceeeEE
Confidence 599999999 4334333333222 2255555433 333888887777777677666555444 3334679999
Q ss_pred eeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCcccc
Q 001535 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1058)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1058)
.+|+...+++++.|+.+++|+ .....--+. ...+..++.|.|.| .++.+
T Consensus 376 ~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~--------~~d~~~~~~fhpsg-~va~G--------------------- 424 (626)
T KOG2106|consen 376 THPSKNQLLTCGQDKHVRLWN-DHKLEWTKI--------IEDPAECADFHPSG-VVAVG--------------------- 424 (626)
T ss_pred cCCChhheeeccCcceEEEcc-CCceeEEEE--------ecCceeEeeccCcc-eEEEe---------------------
Confidence 999999999999999999999 222111111 12356778888888 55333
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeecc
Q 001535 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1058)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~ 796 (1058)
...|...+.|..+ ..+.. +.. ...++..+.|+|+|..|+.++.|+.|.+|.++.+
T Consensus 425 ----------------t~~G~w~V~d~e~----~~lv~--~~~---d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 425 ----------------TATGRWFVLDTET----QDLVT--IHT---DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ----------------eccceEEEEeccc----ceeEE--EEe---cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 3334444444432 22222 211 3678999999999999999999999999987643
Q ss_pred ccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEE---------
Q 001535 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMT--------- 866 (1058)
Q Consensus 797 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~--------- 866 (1058)
|......-.. +..+|+.+.||+|++++.+-+ |-.|..|.....+.+.
T Consensus 480 ---------------------g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t 536 (626)
T KOG2106|consen 480 ---------------------GRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWAT 536 (626)
T ss_pred ---------------------CcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeee
Confidence 2222211122 558899999999999999998 7789999543222111
Q ss_pred --------Ee-cCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCc---eeeeEecccCCCeeEEEEcCCCCEEEEEe
Q 001535 867 --------TF-MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKGHQKRITGLAFSTSLNILVSSG 934 (1058)
Q Consensus 867 --------~~-~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~s~d~~~l~s~s 934 (1058)
.+ ..+...|..++-+. +.+++|+|.+.|+|++|...-. ....++.+|++.|++++|.-+...|++.+
T Consensus 537 ~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg 615 (626)
T KOG2106|consen 537 YTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG 615 (626)
T ss_pred eEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence 11 13455677788888 8999999999999999987643 23456789999999999999999999988
Q ss_pred CCCcEEEEEC
Q 001535 935 ADAQLCVWSI 944 (1058)
Q Consensus 935 ~Dg~i~iwd~ 944 (1058)
.|..|..|++
T Consensus 616 ~D~Si~qW~l 625 (626)
T KOG2106|consen 616 KDTSIMQWRL 625 (626)
T ss_pred CCceEEEEEe
Confidence 9999999986
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=309.24 Aligned_cols=285 Identities=22% Similarity=0.372 Sum_probs=250.0
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCC--ccccccceeecccccCcccccccccCCCcceEEEEECCCCCE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1058)
|...|.|+.|||+|++ +++++.|+.+++|+..+++ ... .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 5889999999999995 8999999999999997666 222 25789999999999999999
Q ss_pred EEEEeCCCeEEEEEe-cCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCee
Q 001535 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1058)
Q Consensus 421 las~~~dg~i~iwd~-~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~ 498 (1058)
+++|+.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+||| .+++++..+.+|.+.|.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445444 7889999999999999997 899999999999999 88999999999999999
Q ss_pred EEeecccCCceEEEEEeeCCeEEEEecCCCCc--eEEeeCCCC--cEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~--~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1058)
+++|.+ ++.+|++++.|+.|++||+.++.. ...+..+.. .++++.|+|++.++++++ .++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~----~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS----LDRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec----CCCeEEEEEccCC
Confidence 999955 778999999999999999999883 344444444 599999999999999998 4889999999999
Q ss_pred ceeeeeecccCc--ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEE--CC
Q 001535 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (1058)
Q Consensus 575 ~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~d 650 (1058)
..+..+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+..+. ...+..++++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999875 33344557789999999999999999999999988888764 55789999999999999998 68
Q ss_pred CcEEEEEcc
Q 001535 651 NGFKILANA 659 (1058)
Q Consensus 651 g~i~iw~~~ 659 (1058)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 899999753
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-30 Score=267.48 Aligned_cols=497 Identities=13% Similarity=0.177 Sum_probs=364.6
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeeccc-ccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cC
Q 001535 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1058)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~ 483 (1058)
..+|.++|||.+.+.||.+-.||.|.||++..+=.... .+.++ ...|.+++|++.+ .|.+.+.+|.|.-|| .+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCC---eEEeecCCceEEEEeccc
Confidence 56899999999999999999999999999988533332 45554 5689999999655 489999999999999 99
Q ss_pred CCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE--EeeCCCCcEEEEEEccCCCEEEEEeccCC
Q 001535 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1058)
Q Consensus 484 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~i~~i~~s~~~~~l~~~~~~~~ 561 (1058)
++++..+....+.|++++.++.. ..++.|+.||.+..++...+.... .+....+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999998754 689999999977777665544433 23344578999999999999999984
Q ss_pred CCceEEEEeCCCCceeeeee-------cccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCce
Q 001535 562 GDSFLVEWNESEGTIKRTYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1058)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 634 (1058)
|+.|++||...+..+.... ......+.++.|-.+ ..|++|...|+|.+||...+.+++....+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 9999999999988766221 112234666766644 5899999999999999999999999887654 7999
Q ss_pred EEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCcc
Q 001535 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1058)
Q Consensus 635 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1058)
++.++++.++++++.|+.|..+...++...
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988876554211
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeee
Q 001535 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1058)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~ 794 (1058)
|-... ....|...|+++++.++ .++++|.|.++.+-...
T Consensus 281 --------------------------wv~~~-------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 281 --------------------------WVINS-------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred --------------------------eeeec-------------cccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 11100 00227778899999887 79999999888775322
Q ss_pred ccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCce---------EE
Q 001535 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK---------VM 865 (1058)
Q Consensus 795 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~---------~~ 865 (1058)
... ..+-. +...+ .... -+...+..++++.-....+.+|.+.+.- +.
T Consensus 320 ~~~--------------~~~h~----~~~~~----p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 320 EFK--------------NMDHR----QKNLF----PASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred ccC--------------chhhh----ccccc----cccc--eeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence 100 00000 00000 1111 1333455555555557788888876541 12
Q ss_pred EEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeE-----ecccCCCeeEEEEcCCCCEEEEEe-CCCcE
Q 001535 866 TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-----LKGHQKRITGLAFSTSLNILVSSG-ADAQL 939 (1058)
Q Consensus 866 ~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~-----~~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i 939 (1058)
+........|.|.+.|| +|+++|.+. -..++||.+.....+.. ...-.-.+..+.|+-|++.++.++ .+..+
T Consensus 376 kl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL 453 (691)
T ss_pred eeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence 22223455799999999 999999876 45688888765322221 122334577889999999888888 67888
Q ss_pred EEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEcc-
Q 001535 940 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC- 1017 (1058)
Q Consensus 940 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~- 1017 (1058)
.+.++.+............ . ....|+.+..|+||.|+|+. ..+.|.+|++++++.-...... ...|+.++|+|
T Consensus 454 e~~el~~ps~kel~~~~~~-~-~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl---n~~vTa~~~~~~ 528 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQ-A-KCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL---NIDVTAAAFSPF 528 (691)
T ss_pred EEEEecCcchhhhhccccc-c-CCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc---Ccceeeeecccc
Confidence 8998887665444443322 2 22889999999999999995 7899999999988765444333 57899999995
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 001535 1018 NSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 1018 dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
+-..|+.+..|+.+.-||++.
T Consensus 529 ~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 529 VRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ccCcEEEEecCCeEEEEecch
Confidence 566888899999999999943
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-29 Score=263.94 Aligned_cols=542 Identities=14% Similarity=0.179 Sum_probs=368.9
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCC-CcceEEEEECCCCCEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYV 421 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~l 421 (1058)
...+|.|+|||.+.+ .||.|-.+|.|.||++..+=.. ..++.|+ ...|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~------------------~~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFL------------------EPVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCcee------------------eEEEecCCCCceeeEEEc-cCCeE
Confidence 467899999999988 5899999999999999874332 2234544 6789999999 56678
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCee--EEeecccCCee
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVY 498 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~--~~~~~h~~~v~ 498 (1058)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.++ .++.|++||.+...+ ..++.. ..|....++|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 888899999999999987655 5777889999999999998 789999999777777 555444 23444568999
Q ss_pred EEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeC--------CCCcEEEEEEccCCCEEEEEeccCCCCceEEEEe
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--------~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1058)
+++|++ ++..+++|+.||.|++||...+........ ...-|.++.|-.++ .|++|- ..|.|.+||
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTVTFWD 231 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceEEEEc
Confidence 999966 667899999999999999988877662211 22257788887665 555553 589999999
Q ss_pred CCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eeEeccCCCCCCCceEEeeCCCCEEEEEE
Q 001535 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1058)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 648 (1058)
...+.+++.+..|.. .|.+++..+++++++++|.|+.|.-|...++.. +.......|...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999987 899999999999999999999999998876543 222222334447899998887 899999
Q ss_pred CCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCC
Q 001535 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (1058)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1058)
.|.++.+-...... ...|... .. .+.+..
T Consensus 309 ~d~~l~i~~s~~~~-----~~~h~~~---------~~-------------------------------------~p~~~~ 337 (691)
T KOG2048|consen 309 RDFTLAICSSREFK-----NMDHRQK---------NL-------------------------------------FPASDR 337 (691)
T ss_pred eeeEEEEccccccC-----chhhhcc---------cc-------------------------------------ccccce
Confidence 99888775432210 0000000 00 000000
Q ss_pred cccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccc
Q 001535 729 RTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (1058)
Q Consensus 729 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~ 808 (1058)
+.+ .| .++|+.--.+..+.+|.+.... +.|.
T Consensus 338 v~~-----------------------------------------a~-~~~L~~~w~~h~v~lwrlGS~~--~~g~----- 368 (691)
T KOG2048|consen 338 VSV-----------------------------------------AP-ENRLLVLWKAHGVDLWRLGSVI--LQGE----- 368 (691)
T ss_pred eec-----------------------------------------Cc-cceEEEEeccccccceeccCcc--cccc-----
Confidence 011 11 1112222223334445432210 0000
Q ss_pred cceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEE--Eec---CCCCCeeEEEEecC
Q 001535 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT--TFM---SPPPASTFLAFHPQ 883 (1058)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~--~~~---~~~~~i~~l~~s~~ 883 (1058)
..-..+....++ ....|.+.++||||+++|.+.-...++|.+.--..+. ... ...-....+.|+-
T Consensus 369 ------~~~~~Llkl~~k---~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~fti- 438 (691)
T KOG2048|consen 369 ------YNYIHLLKLFTK---EKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTI- 438 (691)
T ss_pred ------cChhhheeeecC---CccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEe-
Confidence 000111222222 4677999999999999999998888888876422222 111 1223567788888
Q ss_pred CCcEEEEEE-CCCCEEEEEccCce--eeeEec--ccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecC
Q 001535 884 DNNIIAIGT-EDSTIHIYNVRVDE--VKSKLK--GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958 (1058)
Q Consensus 884 ~~~~lasg~-~dg~v~iwd~~~~~--~~~~~~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 958 (1058)
++..++..+ .+..+.+++..+.. .+..+. +-...|..+..||||++||+.+.+|.|.+|++++++......
T Consensus 439 d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---- 514 (691)
T KOG2048|consen 439 DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---- 514 (691)
T ss_pred cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh----
Confidence 666666666 77888888887653 222222 345689999999999999999999999999999976432221
Q ss_pred CCCCCCCceEEEEcCC-CCEEEE-EECCeEEEEECCCCeeeeeeccC---------CCCCCCEEEEEEccCCCEEEEEeC
Q 001535 959 AGKTPTGDTRVQFNAD-QVRMLV-VHETQLAIYDASKMERIRQWTPQ---------DALSAPISCAVYSCNSQLVFATFC 1027 (1058)
Q Consensus 959 ~~~~~~~v~~l~~s~d-~~~l~~-~~d~~v~v~d~~~~~~~~~~~~~---------~~~~~~v~~l~~s~dg~~l~t~~~ 1027 (1058)
.....++.++|+|. ...|++ .+++++.-||++..+ +..|... ......+..+.|++..+..+...+
T Consensus 515 --rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~ 591 (691)
T KOG2048|consen 515 --RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYD 591 (691)
T ss_pred --ccCcceeeeeccccccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEc
Confidence 11167899999964 444554 589999999984322 2221111 112457788888877665555555
Q ss_pred CCcEEEEeC
Q 001535 1028 DGNIGVFDA 1036 (1058)
Q Consensus 1028 dg~i~iw~~ 1036 (1058)
.+-+.+.|.
T Consensus 592 a~w~~~id~ 600 (691)
T KOG2048|consen 592 AHWSCLIDF 600 (691)
T ss_pred CcEEEEEec
Confidence 566666665
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=267.98 Aligned_cols=247 Identities=21% Similarity=0.290 Sum_probs=227.9
Q ss_pred cccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEE
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 480 (1058)
.+.+|..+|+.+-|.|+-..+++++.|++|++||..+|+..+ .+.||...|.+++|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 377899999999999999999999999999999999999866 6899999999999999999 89999999999999
Q ss_pred e--cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEec
Q 001535 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 481 d--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 558 (1058)
| ..-++++.+.+|...|.+++|.|. |.++++++.|.+|+.|+++++-+..++.+|...|..+..+.||..+++++
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s- 254 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS- 254 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC-
Confidence 9 346788899999999999999885 47999999999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCceeeEe
Q 001535 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---------------QNHFLAVGEDSQIKFWDMDNVNILTST 623 (1058)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~vwd~~~~~~~~~~ 623 (1058)
.+..+++|-+.++++...++.|.- ++.+++|-|. +.++.+++.|++|++||+.++.++.++
T Consensus 255 ---~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 255 ---NDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred ---CCceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 499999999999999999998886 7888888653 248899999999999999999999999
Q ss_pred ccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 624 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
..++ ..|..++|+|.|++|+++.+|+++++||+++.
T Consensus 331 ~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 331 VGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred eccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 8665 48999999999999999999999999999876
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=273.25 Aligned_cols=276 Identities=20% Similarity=0.286 Sum_probs=235.7
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
....|.|+++..+ .+++|..|++|+|||.++-.++. ++.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 4568999998744 37999999999999998776654 39999999999999 567999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCC---eeEEeecccCCee
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~---~~~~~~~h~~~v~ 498 (1058)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.++.+|| .... +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 67899999999999843 799999999999999 3332 3366789999999
Q ss_pred EEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceee
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1058)
.+.| +.+++++++.|.+|++|++.+.....++.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4479999999999999999999999999999999988875 6788888874 9999999999999999
Q ss_pred eeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-------eEeccCCCCCCCceEEeeCCCCEEEEEECCC
Q 001535 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL-------TSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1058)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 651 (1058)
.+.||.. -|.++.|. .+.+++|+.||+|++||+..+... .....-.|.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999997 89999985 679999999999999999876533 22222345557888888 667899999999
Q ss_pred cEEEEEccCCccc
Q 001535 652 GFKILANAIGLRS 664 (1058)
Q Consensus 652 ~i~iw~~~~~~~~ 664 (1058)
+|.|||..++...
T Consensus 470 tILiWdFl~~~~~ 482 (499)
T KOG0281|consen 470 TILIWDFLNGPPS 482 (499)
T ss_pred eEEEEEcCCCCcc
Confidence 9999999887433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-31 Score=271.32 Aligned_cols=638 Identities=16% Similarity=0.216 Sum_probs=356.4
Q ss_pred EEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC
Q 001535 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1058)
Q Consensus 338 ~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1058)
...-.|++.|+.+.|||....+||+||.|..|+||.+..|.... ..-....+.+..-.|-|+.|+|.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccC
Confidence 33344999999999999877799999999999999998553321 01122235555678999999997
Q ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeEEeecccC
Q 001535 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEA 495 (1058)
Q Consensus 418 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~h~~ 495 (1058)
.+-|...+..|+++|||+.+++.+. .+.+|...|.++.|+.||. ++++++.|+.|+||| ..++.++...+|.+
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccccc
Confidence 7666666678999999999988665 6889999999999999999 899999999999999 78889999999976
Q ss_pred C-eeEEeecccCCceEEEEEeeC----CeEEEEecCCCCceE-EeeCC-CCcEEEEEEccCCCEEEEEeccCCCCceEEE
Q 001535 496 P-VYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRV-DYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1058)
Q Consensus 496 ~-v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~-~~~~~-~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1058)
. -..+.| .++-..|++.+.+ ..|++||.+...... ++... .-.|.---+.||.++++.++. ++..+..
T Consensus 215 ~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~~ 289 (1012)
T KOG1445|consen 215 MRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLFM 289 (1012)
T ss_pred chhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEEE
Confidence 4 123444 4444567776655 568999987654432 22222 224556678899999888874 6888888
Q ss_pred EeCCCCcee--eeeecccCcceeEEEEcCCCCEEEEEeC---------------------------------------CC
Q 001535 569 WNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGE---------------------------------------DS 607 (1058)
Q Consensus 569 wd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------------------------------dg 607 (1058)
+.+...+.. ..+...........++.|....-+..++ -+
T Consensus 290 lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred EEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 887654321 1111000000001111111000000000 00
Q ss_pred c-EEEEECCCCceeeEecc------CC----------------CCCCCceEEeeCCCC-EEEEEECC-------------
Q 001535 608 Q-IKFWDMDNVNILTSTDA------EG----------------GLPNLPRLRFSKEGN-LLAVTTAD------------- 650 (1058)
Q Consensus 608 ~-i~vwd~~~~~~~~~~~~------~~----------------~~~~v~~v~~s~~~~-~l~~~~~d------------- 650 (1058)
. -.-|=-.+.+.+..... |+ ....|......|... ..-+.+++
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~ 449 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK 449 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc
Confidence 0 00010011111111100 00 000000000011000 00000000
Q ss_pred CcEEEEEccCCccccccccC----C----CcccccCcccceeeeeccccccccCC----CCcceeeccCC-----CCCCc
Q 001535 651 NGFKILANAIGLRSLRAVEN----P----PFEALRTPIESVALKVSASSAVSSGT----PANCKVERSSP-----VRPSP 713 (1058)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~----~----~~~~~~~~i~~~~~s~~g~~l~~~~~----~~~~~~~~~~~-----~~~~~ 713 (1058)
..++-.+... .....+ . ......+++.. ++|....++--.+ ..........+ .....
T Consensus 450 ~e~r~l~~~~----~E~~~g~~~~~~dad~~~g~sS~~s~--~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~ 523 (1012)
T KOG1445|consen 450 EEVRELDYRP----YEKENGVHTPNADADSTQGNSSPIST--ISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQP 523 (1012)
T ss_pred hhhhhhcccc----cccccCccCCCcccccccCCCCCccc--cCCCcccccCCCCcccccccccccccCccccccCCCCC
Confidence 0000000000 000000 0 00000011110 0111111100000 00000000000 00000
Q ss_pred cccCCCCCCCCCCCCcccCCCC------CCCCcceeeeee---cCCce---EE--EEecCCCCCcccEEEEEEecCcceE
Q 001535 714 IINGVDPTSRSMDKPRTVDDVT------DKPKPWQLAEIV---DSGQC---RL--VTMPESTDTSSKVVRLLYTNSAVGL 779 (1058)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~d------~~i~vw~~~~~~---~~~~~---~~--~~~~~~~~~~~~i~~l~~s~~~~~l 779 (1058)
.. +....++.......+.+.. |.+.-+.-..+. ....+ +. ..+|+ .-. -|..+..++
T Consensus 524 ~~-~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg------Esn--Gfcan~~rv 594 (1012)
T KOG1445|consen 524 PV-NFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG------ESN--GFCANNKRV 594 (1012)
T ss_pred Cc-ccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC------ccC--ceeeccceE
Confidence 00 0000000000000000000 111111100000 00000 00 00111 111 223334444
Q ss_pred EE--eeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEec-CCCEEEEEe-CCcEE
Q 001535 780 LA--LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKIS 855 (1058)
Q Consensus 780 ~~--~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~i~ 855 (1058)
++ .+..|.|-||+++.....++|-. .+......|+.+.|.| |.+.||++. ||.|+
T Consensus 595 AVPL~g~gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~ 653 (1012)
T KOG1445|consen 595 AVPLAGSGGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFDDERLAVATDDGQIN 653 (1012)
T ss_pred EEEecCCCceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCChHHeeecccCceEE
Confidence 43 45578999999876554444432 2222567799999999 777888887 89999
Q ss_pred EEECCCc-------eEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCC
Q 001535 856 LFNMMTF-------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (1058)
Q Consensus 856 vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 928 (1058)
+|.+..+ .+...+..|...|+++.|+|--..+|++++.|-+|++||+.+++....+.+|.+.|.+++|||||+
T Consensus 654 lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr 733 (1012)
T KOG1445|consen 654 LWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR 733 (1012)
T ss_pred EEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc
Confidence 9998754 345677889999999999997788999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEE-E----ECCeEEEEECCCCe--eeeeec
Q 001535 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V----HETQLAIYDASKME--RIRQWT 1001 (1058)
Q Consensus 929 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~-~----~d~~v~v~d~~~~~--~~~~~~ 1001 (1058)
.+|+.+.||+|++|+-.+++.. +....+.....-..+.|--||+++++ | +.++|.+||..+.. .+....
T Consensus 734 ~~AtVcKDg~~rVy~Prs~e~p----v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 734 RIATVCKDGTLRVYEPRSREQP----VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred ceeeeecCceEEEeCCCCCCCc----cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence 9999999999999999886632 22222222255578899999999988 3 45679999987643 222211
Q ss_pred cCCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe
Q 001535 1002 PQDALSAPISCAVYSCNSQ-LVFATFCDGNIGVFDADTLR 1040 (1058)
Q Consensus 1002 ~~~~~~~~v~~l~~s~dg~-~l~t~~~dg~i~iw~~~~~~ 1040 (1058)
..- ...+.--.+.+|.. ++++|-.|..|.+|.+..-+
T Consensus 810 lDv--aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 810 LDV--APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ecc--cCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 110 12222334556655 55578899999999986543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=254.45 Aligned_cols=249 Identities=18% Similarity=0.305 Sum_probs=215.7
Q ss_pred cccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEE
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 480 (1058)
.+.||.+.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .+++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 478999999999999999999999999999999976532 23446889999999999999999 89999999999999
Q ss_pred e-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEecc
Q 001535 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1058)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~ 559 (1058)
| .+|+.++.+++|..-|++++... .+-.++.+++.||++++||++......++. ....++++.|..++..+.+++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc-
Confidence 9 99999999999999999998432 344688899999999999999776665543 3457899999999999999985
Q ss_pred CCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeeEeccCCCCC--CCc
Q 001535 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLP--NLP 633 (1058)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~--~v~ 633 (1058)
|+.|++||++......++.||.+ .|+.+..+++|.++.+-+.|.++++||++.. +++..+..+.|.- ...
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ---cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 88899999999999999999998 8999999999999999999999999998753 3355555444322 345
Q ss_pred eEEeeCCCCEEEEEECCCcEEEEEccC
Q 001535 634 RLRFSKEGNLLAVTTADNGFKILANAI 660 (1058)
Q Consensus 634 ~v~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1058)
.++|+|+++.+..|+.|..+++||...
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred eeeccCCCCccccccccceEEEeeccc
Confidence 789999999999999999999999754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=295.81 Aligned_cols=266 Identities=13% Similarity=0.200 Sum_probs=230.8
Q ss_pred CcccEEEEEEecCcceEEEeeccCeeEEeeeeccccC---------CCCcccccccceeeccCCCceeeeeccCCCCCCC
Q 001535 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN---------PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1058)
....+.+..|++|+..++.|..|..|++|.+...... ......+.....+.|..++.... .+.+ |.++
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~-~L~G--H~GP 453 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR-TLYG--HSGP 453 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE-Eeec--CCCc
Confidence 4567899999999999999999999999998853211 11111111123344444444333 2555 9999
Q ss_pred eeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEec
Q 001535 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1058)
Q Consensus 834 v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~ 912 (1058)
|....|+|+.++|++++ |+++++|.+.+..++..+.+|..+|.++.|+| .|-++|+++.|++.++|.......++.+.
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999999999999 89999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEEC
Q 001535 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDA 991 (1058)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~ 991 (1058)
+|.+.|.|+.|+|++.|+++||.|.+|++||+.+|..++.+ .||. ++|.+++|||+|++|++| .|+.|.+||+
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-----~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-----TGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-----cCCC-CceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 99999999999999999999999999999999999875555 5555 999999999999999996 7999999999
Q ss_pred CCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 001535 992 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1041 (1058)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~ 1041 (1058)
.++..+..+..| .+.|.++.||.||..||+|+.|.+|++||+..-..
T Consensus 607 ~~~~~v~~l~~H---t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 607 ANGSLVKQLKGH---TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred CCCcchhhhhcc---cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999999887 79999999999999999999999999999965433
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=273.62 Aligned_cols=240 Identities=16% Similarity=0.255 Sum_probs=214.3
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCC
Q 001535 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1058)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 485 (1058)
..+|..|.|.|+|+.|++|+..|.+.+|+..+-... ..+..|..+|+++.|+++|. +++||+.+|.|++|+..-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE---tilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE---TILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH---HHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 458999999999999999999999999997542211 13568999999999999999 8999999999999996666
Q ss_pred eeEEeeccc-CCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCc
Q 001535 486 KLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1058)
Q Consensus 486 ~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~ 564 (1058)
.++.+.+|. ..|++++|+| ++..+++++.||+|++||.........+.+|+-.|.++.|+|....+++++ +|+
T Consensus 171 nVk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgs----kDn 244 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGS----KDN 244 (464)
T ss_pred hhHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEcc----CCc
Confidence 666666665 8999999987 457899999999999999999888888999999999999999999999998 477
Q ss_pred eEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeC-CCCE
Q 001535 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNL 643 (1058)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 643 (1058)
.|++||.+++.++.++.+|.. .|..+.|++++++|++++.|..++++|+++.+.+..+..| ...|++++|+| ...+
T Consensus 245 lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccccc
Confidence 999999999999999999998 8999999999999999999999999999988888887755 45799999999 6678
Q ss_pred EEEEECCCcEEEEEcc
Q 001535 644 LAVTTADNGFKILANA 659 (1058)
Q Consensus 644 l~~~~~dg~i~iw~~~ 659 (1058)
|.+|+.||.|..|.+.
T Consensus 322 ftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVG 337 (464)
T ss_pred eeeccCCCceEEEecc
Confidence 9999999999999875
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=244.37 Aligned_cols=242 Identities=15% Similarity=0.296 Sum_probs=207.8
Q ss_pred cccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCcceeeeee-cccccCeEEEEeecCCCeeEEEEEeCCCcEE
Q 001535 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l-~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 478 (1058)
.+.+|.+.|..++|+|- |..||+|+.|+.|++|+...+........+ .+|+..|.+++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 48899999999999998 999999999999999999865555444344 37999999999999999 899999999999
Q ss_pred EEe-cCC--CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCC---ceEEeeCCCCcEEEEEEccCCCE
Q 001535 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADGSR 552 (1058)
Q Consensus 479 iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~i~~s~~~~~ 552 (1058)
||. ..+ +++.++.||...|.+++|+. +|.+||+++.|+.|-+|.++... ....++.|.+.|..+.|+|...+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999 433 67889999999999999965 67899999999999999987443 34578889999999999999999
Q ss_pred EEEEeccCCCCceEEEEeCC---CCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC
Q 001535 553 LFSCGTSKDGDSFLVEWNES---EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 629 (1058)
|++++. |++|++|+-. ...+++++.+|.. .+.+++|++.|..|++++.|++++||...+. +. ..+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcc
Confidence 999996 9999999866 3468999999998 8999999999999999999999999986522 11 1234
Q ss_pred CCCceEEeeCCCCEEEEEECCCcEEEEEcc
Q 001535 630 PNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 630 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
..+..++|. ...|++++.|+.|++|.-.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEec
Confidence 468889998 4589999999999999754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=266.39 Aligned_cols=289 Identities=17% Similarity=0.284 Sum_probs=241.6
Q ss_pred EeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC---ceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcE
Q 001535 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1058)
Q Consensus 533 ~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1058)
.+..|...|.-+.||++|++||+++ .|.+..+|++... ++..++.+|.. +|..+.|+||.++|++++.|..+
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaS----kD~Taiiw~v~~d~~~kl~~tlvgh~~-~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASAS----KDSTAIIWIVVYDVHFKLKKTLVGHSQ-PVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeecc----CCceEEEEEEecCcceeeeeeeecccC-ceEEEEECCCCCeEEecCchHhe
Confidence 4556778899999999999999998 4888888987544 45788999998 88899999999999999999999
Q ss_pred EEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeecc
Q 001535 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1058)
Q Consensus 610 ~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 689 (1058)
.+||+.+|.....+... ....+.+++|.|||..+++|+.|+++..||+.... ..
T Consensus 294 ~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~----------------------- 347 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LG----------------------- 347 (519)
T ss_pred eeccCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hh-----------------------
Confidence 99999999988877653 34478999999999999999999999999986531 11
Q ss_pred ccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEE
Q 001535 690 SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769 (1058)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 769 (1058)
-|.-. ....|.+
T Consensus 348 --------------------------------------------------~W~gv------------------r~~~v~d 359 (519)
T KOG0293|consen 348 --------------------------------------------------NWEGV------------------RDPKVHD 359 (519)
T ss_pred --------------------------------------------------ccccc------------------ccceeEE
Confidence 12211 2246888
Q ss_pred EEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEE
Q 001535 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1058)
Q Consensus 770 l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 849 (1058)
+++++||+++++.+.|..+++++...... -+ ++ ....+|+++++|.||+++.+.
T Consensus 360 lait~Dgk~vl~v~~d~~i~l~~~e~~~d------------------r~-li-------se~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 360 LAITYDGKYVLLVTVDKKIRLYNREARVD------------------RG-LI-------SEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred EEEcCCCcEEEEEecccceeeechhhhhh------------------hc-cc-------cccCceeEEEEcCCCcEEEEE
Confidence 99999999999999999999998653210 00 11 156789999999999998887
Q ss_pred e-CCcEEEEECCCceEEEEecCCCCC--eeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCC
Q 001535 850 T-GGKISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (1058)
Q Consensus 850 ~-dg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 926 (1058)
- +..+++||++..+.++.+.||... +..-+|.-.+..++|+|++|+.|+||+..+|+++.++.||...|++|+|+|.
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 6 889999999999999999998764 5555676546689999999999999999999999999999999999999996
Q ss_pred C-CEEEEEeCCCcEEEEECCC
Q 001535 927 L-NILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 927 ~-~~l~s~s~Dg~i~iwd~~~ 946 (1058)
. .++||||.||+|+||....
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 4 5899999999999998865
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=279.12 Aligned_cols=291 Identities=18% Similarity=0.279 Sum_probs=246.7
Q ss_pred CcceEEeec-CCCcEEEEEeec-CCCeEEEEEeccceEEEEEccC-CCccccccceeecccccCcccccccccCCCcceE
Q 001535 334 PRTVAVSLH-QGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1058)
Q Consensus 334 ~~~~~~~~~-h~~~V~~v~~sp-~g~~lla~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1058)
|.....++. |+..|+++.|.| .+. ||++|+.|+.|+||++.. ++++++ +.||..+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred cHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 555566655 999999999999 565 899999999999999987 566543 889999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEE
Q 001535 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1058)
Q Consensus 411 ~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~ 489 (1058)
+++|+++|..+++++.|+.|++||+++|+++..+. -...++|+.|.||+.. .+++|+.|+.|+.|| .+|+.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999998776432 2446899999999955 789999999999999 99999999
Q ss_pred eecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE-EeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEE
Q 001535 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1058)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1058)
+..|-+.|..+.|.+ +|..+++.+.|+.+++|+.+..-... ......+.+.++..+|++.+++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 999999999999966 67899999999999999988765544 23344557889999999999998774 888999
Q ss_pred EeCCCC---ceeeeeecccCcc-eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeC-CCCE
Q 001535 569 WNESEG---TIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNL 643 (1058)
Q Consensus 569 wd~~~~---~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 643 (1058)
+.+... ...+.+.+|.... -..+.|+|||.+|++|+.||.+.+||..+-+++..+..+ ...+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--DQPCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--CcceEEEEecCCCcce
Confidence 886543 3445677775422 344899999999999999999999999999999998876 44789999999 4568
Q ss_pred EEEEECCCcEEEEE
Q 001535 644 LAVTTADNGFKILA 657 (1058)
Q Consensus 644 l~~~~~dg~i~iw~ 657 (1058)
+|+++.+|.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-30 Score=276.88 Aligned_cols=282 Identities=26% Similarity=0.421 Sum_probs=249.4
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++.... +.+|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEE
Confidence 5899999999999998 688998999999999987764332 66788999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEE
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 500 (1058)
++++.||.|++||+.+++.+. .+..|...|.++.|++++. ++++++.|+.|++|| .+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 4668998999999999977 788888899999999 7788888899999999999
Q ss_pred eecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeee
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1058)
+|++. +.++++++.|+.|++||++.......+..+...+.++.|+|+++.+++++. ++.+.+||+.+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99764 578888888999999999988887788888889999999999999988874 889999999999998888
Q ss_pred ecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEE
Q 001535 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1058)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 657 (1058)
..+.. .+..+.|++++.++++++.||.|++|++.+++....+.. +...+.+++|+|++.++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG--HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc--cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 788999999988888888899999999999888888774 344799999999999999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=270.19 Aligned_cols=293 Identities=17% Similarity=0.305 Sum_probs=247.1
Q ss_pred eeeeecccccCeEEEEeec-CCCeeEEEEEeCCCcEEEEe--cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCe
Q 001535 443 QHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (1058)
Q Consensus 443 ~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (1058)
..+++.+|...|+++.|.| .+. +|++++.|+.|+||+ .++++++++.+|..+|.+++|+. +|..+++++.|+.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~--~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN--CGTSFLSASFDRF 281 (503)
T ss_pred heeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc--cCCeeeeeeccee
Confidence 3447889999999999999 555 899999999999999 66999999999999999999955 7789999999999
Q ss_pred EEEEecCCCCceEEeeCCCCcEEEEEEccCC-CEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCC
Q 001535 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1058)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1058)
+++||.+++.....+.. +..+.++.|.||+ +.+++|+ .++.|+.||+++++.++.+..|-+ .+..+.|-++|.
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~----sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGG----SDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGR 355 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEec----CCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCc
Confidence 99999999998887764 4568999999999 5666666 499999999999999999998887 899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccC
Q 001535 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1058)
Q Consensus 599 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (1058)
++++.++|+.++||+......+..+.... .-...|+..+|++.+++.-+.|+.|.++.+....+.-+ ..
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk---kK------- 424 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK---KK------- 424 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCH---hh-------
Confidence 99999999999999998887766554332 22578999999999999999999999988643211000 00
Q ss_pred cccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEec
Q 001535 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1058)
Q Consensus 679 ~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1058)
T Consensus 425 -------------------------------------------------------------------------------- 424 (503)
T KOG0282|consen 425 -------------------------------------------------------------------------------- 424 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEE
Q 001535 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1058)
Q Consensus 759 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1058)
.+.+....+.-..+.
T Consensus 425 -----------------------------------------------------------------~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 425 -----------------------------------------------------------------RFEGHSVAGYSCQVD 439 (503)
T ss_pred -----------------------------------------------------------------hhcceeccCceeeEE
Confidence 000000123344689
Q ss_pred EecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEE
Q 001535 839 LSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1058)
Q Consensus 839 ~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd 901 (1058)
|||||.+|++|+ +|.+.+||.++.+.+..+..|...+..+.|+|.....+|+++.||.|++|+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999998 999999999999999999999999999999998888999999999999996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=243.59 Aligned_cols=289 Identities=19% Similarity=0.264 Sum_probs=254.9
Q ss_pred ceEEeecCCCcEEEEEeec---CCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEE
Q 001535 336 TVAVSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1058)
Q Consensus 336 ~~~~~~~h~~~V~~v~~sp---~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1058)
.....-+|+.+|..++||| +|- +|++++.||.-.+-+-++|.-+.+ +.||.+.|...
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~ 65 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSA 65 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeee
Confidence 3445567999999999985 775 799999999999988888887754 88999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeEEe
Q 001535 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNF 490 (1058)
Q Consensus 413 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~ 490 (1058)
....+...-|+++.|-+.+|||.-+|..+.. + .|..-|.+++|+.|.. +|++|+.++.++|+| ....+...+
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhh
Confidence 9999999999999999999999999987763 3 5888999999999999 799999999999999 455677889
Q ss_pred ecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEe
Q 001535 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1058)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1058)
.+|.+.|..+-|... .+.+++.+.|++||+||.+++.....+.. ..+|+++.++++|++|.++. .+.|.+||
T Consensus 140 ~ghtg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwd 211 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWD 211 (334)
T ss_pred cCCCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEec
Confidence 999999999999763 36888889999999999999988877764 45799999999999998875 67899999
Q ss_pred CCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECC
Q 001535 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1058)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 650 (1058)
..+...++.+.... .|.+..++|+...+++|++|..++.||..+|+.+... ..+|.++|.|+.|+|+|...++|+.|
T Consensus 212 aksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 212 AKSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCC
Confidence 99999999888765 4888899999999999999999999999999998886 34667799999999999999999999
Q ss_pred CcEEEEEccCC
Q 001535 651 NGFKILANAIG 661 (1058)
Q Consensus 651 g~i~iw~~~~~ 661 (1058)
|+|+||....+
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 99999998665
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=255.86 Aligned_cols=231 Identities=16% Similarity=0.292 Sum_probs=202.3
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cC
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~ 483 (1058)
....|.|+.+ |...+++|..|++|+|||..+-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+||| .+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3458999998 67789999999999999999877766 688999999999995 44 899999999999999 99
Q ss_pred CCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCce---EEeeCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 484 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
|+++.++.+|...|..+.|+ ..++++++.|.++.+||+...... ..+.+|...|+.+.|+ .+++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsAS--- 337 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS--- 337 (499)
T ss_pred CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEec---
Confidence 99999999999999999984 258999999999999999876532 3567788889998885 45899887
Q ss_pred CCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCC
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1058)
+|.+|++|++.+++.++++.+|.. .|.|+.+ .++++++|+.|.+|++||+..|.++..+++|. .-|.|+.| |
T Consensus 338 -gDRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE--eLvRciRF--d 409 (499)
T KOG0281|consen 338 -GDRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF--D 409 (499)
T ss_pred -CCceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH--Hhhhheee--c
Confidence 599999999999999999999987 5666554 57899999999999999999999999988654 47999999 5
Q ss_pred CCEEEEEECCCcEEEEEccCC
Q 001535 641 GNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
.+.+++|..||+|++||+..+
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 678999999999999999876
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=285.21 Aligned_cols=248 Identities=22% Similarity=0.375 Sum_probs=221.0
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--c
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~ 482 (1058)
|...|.|+.||+||+++++++.++.+++|+..+++. .....+.+|...|.+++|+|+++ ++++++.|++|+||| .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 488999999999999999999999999999977662 22225689999999999999999 899999999999999 4
Q ss_pred CCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCC
Q 001535 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1058)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~ 562 (1058)
.+..++++.+|...|++++|++ +++++++|+.|++|++||+++++....+..|...|++++|++++..+++++ .
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s----~ 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS----Y 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC----C
Confidence 4588899999999999999977 458999999999999999999999999999999999999999999999997 4
Q ss_pred CceEEEEeCCCCc--eeeeeecccCc-ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC-CCCceEEee
Q 001535 563 DSFLVEWNESEGT--IKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFS 638 (1058)
Q Consensus 563 ~~~i~~wd~~~~~--~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~v~~s 638 (1058)
|+.|++||+.++. +...+.++... .+.+++|+|++.++++++.|+.+++||+..+........+... ..+.+...+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 9999999999999 66888887775 6899999999999999999999999999999988888766543 133444557
Q ss_pred CCCCEEEEEECCCcEEEEEccCC
Q 001535 639 KEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+.+.++++|+.|+.|.+|+..++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc
Confidence 89999999999999999999875
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=303.97 Aligned_cols=292 Identities=14% Similarity=0.184 Sum_probs=236.3
Q ss_pred ecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC-CCC
Q 001535 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1058)
Q Consensus 341 ~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 419 (1058)
..|.+.|++++|+|+|+ ++|+|+.|+.|+|||..+...... . .......+. +...|.+++|+| ++.
T Consensus 480 ~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIKS 546 (793)
T ss_pred cCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCCC
Confidence 34899999999999999 689999999999999764211000 0 000001122 346899999988 578
Q ss_pred EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeec-CCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCe
Q 001535 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1058)
Q Consensus 420 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v 497 (1058)
+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999999999999999886554 5789999999999997 667 899999999999999 888888888755 578
Q ss_pred eEEeecccCCceEEEEEeeCCeEEEEecCCCC-ceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC---
Q 001535 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (1058)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--- 573 (1058)
.++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++..+++++. |+.|++||+..
T Consensus 621 ~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~ 694 (793)
T PLN00181 621 CCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSIS 694 (793)
T ss_pred EEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcc
Confidence 8998854 367899999999999999998765 355677888899999997 7788888874 89999999974
Q ss_pred ---CceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEec-----------cCCCCCCCceEEeeC
Q 001535 574 ---GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSK 639 (1058)
Q Consensus 574 ---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----------~~~~~~~v~~v~~s~ 639 (1058)
...+..+.+|.. .+.+++|++++.+|++|+.|+.|++|+......+..+. ...+...|.+++|+|
T Consensus 695 ~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 356788888876 78889999999999999999999999987654433221 122334589999999
Q ss_pred CCCEEEEEECCCcEEEEEc
Q 001535 640 EGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~ 658 (1058)
++..|++|+.+|.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=238.96 Aligned_cols=307 Identities=14% Similarity=0.222 Sum_probs=242.1
Q ss_pred eEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccc---cccccCCCcceEEEE
Q 001535 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQ---ASIFKDVPISVSRVA 413 (1058)
Q Consensus 337 ~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~V~~l~ 413 (1058)
......|++++.+.+|||||. ++|+|+.|..|+|.|+... +... +.-++.......+ -+.+..|.+.|+++.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildverm--laks--~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERM--LAKS--KPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhh--hhhc--chhhhccCCcccCCceEeehhhccCccccee
Confidence 344456999999999999999 8999999999999998621 1000 0111111111111 135788999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEe--
Q 001535 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1058)
Q Consensus 414 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~-- 490 (1058)
|.|....|++|+.|++|+++|+......+.++.+ ....+|.++.|+|.|. +++.|..-.++++|| .+-++...-
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCc
Confidence 9999999999999999999999865544443333 3566899999999999 889999999999999 776665432
Q ss_pred -ecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeC-C-CCcEEEEEEccCCCEEEEEeccCCCCceEE
Q 001535 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-P-GHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1058)
Q Consensus 491 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~-~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~ 567 (1058)
.+|.+.|+++.+++ .+++.++++.||.|++||--...+..++.. | +..|.+..|..+|+++++.+ .|..++
T Consensus 257 d~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG----~DS~vk 330 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG----KDSTVK 330 (430)
T ss_pred ccccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC----Ccceee
Confidence 46899999999865 668999999999999999887777665532 3 44899999999999999988 499999
Q ss_pred EEeCCCCceeeeeecccC----cceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCC
Q 001535 568 EWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1058)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 642 (1058)
+|.+.+++++.++.|... .--+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+.++.-+|.+.
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEP 409 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCC
Confidence 999999999999987522 1122345777777777765 467899999999887776654 6778999999999999
Q ss_pred EEEEEECCCcEEEEEc
Q 001535 643 LLAVTTADNGFKILAN 658 (1058)
Q Consensus 643 ~l~~~~~dg~i~iw~~ 658 (1058)
-++++++|..+++|--
T Consensus 410 ~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYR 425 (430)
T ss_pred ceeeecccceeeeeee
Confidence 9999999999999964
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=221.51 Aligned_cols=311 Identities=18% Similarity=0.214 Sum_probs=242.0
Q ss_pred cceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEE
Q 001535 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1058)
Q Consensus 335 ~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1058)
.....++..+..|.+|+|+|.|. +.|+|+...+.+|-....-..++. .-+...-.+...-+.-+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEe
Confidence 45566777899999999999999 789999999999876543211110 0000000011112335679999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEec--CCCcceeeeeecccccCeEEEEeecC---CCeeEEEEEe-CCCcEEEEe-cCCCee
Q 001535 415 SPDGNYVGVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG-DDKLIKVWE-LSGRKL 487 (1058)
Q Consensus 415 spdg~~las~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~l~~s~d---~~~~~l~s~~-~d~~i~iwd-~~~~~~ 487 (1058)
||+|.+||+|++|.+|++.-+. +......-.++.-|.+.|.+++|..+ +.. +|++++ .|..|++-| ..|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 9999999999999999997654 33333333457889999999999754 333 556554 577888888 999999
Q ss_pred EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC-------CCcEEEEEEccCCCEEEEEeccC
Q 001535 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
+.+.+|.+.|.++- ++ ++-++++|+.|.+|++||++...+..++... ...|.++++.|.|++|+++.
T Consensus 177 ~a~sghtghilaly-sw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~--- 250 (350)
T KOG0641|consen 177 HALSGHTGHILALY-SW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH--- 250 (350)
T ss_pred eeecCCcccEEEEE-Ee--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc---
Confidence 99999999999874 22 5679999999999999999987776654332 24799999999999999987
Q ss_pred CCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeeEeccCCCCCCCceEEee
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFS 638 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~v~~s 638 (1058)
.|....+||++.+++++.+..|.. .|.++.|+|...++++++.|..|++-|+... ..+.......|...+..+.|+
T Consensus 251 -~dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 251 -ADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred -CCCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 488899999999999999999987 8999999999999999999999999998642 122222223455567889999
Q ss_pred CCCCEEEEEECCCcEEEEEcc
Q 001535 639 KEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
|..--+++.+.|.++.+|.+.
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 999999999999999999764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=230.51 Aligned_cols=248 Identities=19% Similarity=0.258 Sum_probs=219.5
Q ss_pred ccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcE
Q 001535 398 QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1058)
Q Consensus 398 ~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 477 (1058)
...++..|.++|..+.|+-||+|.++++.|.+|++|+...|..++ ++.+|...|.+++.+.|+. .|++|+.|+.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceE
Confidence 335688899999999999999999999999999999999998777 7889999999999999999 79999999999
Q ss_pred EEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCC--ceEEeeCCCCcEEEEEEccCCCEEE
Q 001535 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLF 554 (1058)
Q Consensus 478 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~i~~s~~~~~l~ 554 (1058)
.+|| .+|+.++++.+|.+.|+.+.|+. +...+++|+.|..+++||-+... +...+......|.++.++ +..|+
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 9999 99999999999999999999954 66899999999999999987654 445566666688888775 45677
Q ss_pred EEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCce
Q 001535 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1058)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 634 (1058)
+++. ||+++.||++.|++...+.++ +|++++|+++++..++++.|+++++.|-.+|+++..+..+.....-..
T Consensus 160 aGS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 160 AGSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred eecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 7774 999999999999988777765 799999999999999999999999999999999999887766544567
Q ss_pred EEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 635 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
++++.....+++|+.||.|++||+...
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccc
Confidence 788888889999999999999999775
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=263.29 Aligned_cols=246 Identities=24% Similarity=0.396 Sum_probs=217.7
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+.+|.++|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 67899999999999999999999999999999999876444 5678999999999999998 799999999999999
Q ss_pred -cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
.+++.+..+..|...+.+++|++. +.++++++.||.+.+||+++......+..+...+.++.|+|++.++++++
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--- 154 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--- 154 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc---
Confidence 777888889999999999999764 57888888899999999998777777777888999999999988888876
Q ss_pred CCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCC
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1058)
.++.+++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+.+++.+..+..+ ...+.+++|+|+
T Consensus 155 -~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 155 -QDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPD 230 (289)
T ss_pred -CCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCC
Confidence 388999999999998888887765 7899999999999999999999999999998888777543 337899999999
Q ss_pred CCEEEEEECCCcEEEEEccCC
Q 001535 641 GNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+.++++++.+|.+++|+..++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 889998888999999998653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=294.64 Aligned_cols=270 Identities=15% Similarity=0.199 Sum_probs=214.7
Q ss_pred cceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCC----Ccc
Q 001535 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDL 441 (1058)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~----~~~ 441 (1058)
+|.+++|+..+.+.... .....+.+|.+.|.+++|+|+|++||+|+.|+.|+|||..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--------------~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--------------LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--------------eccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888765433211 011124569999999999999999999999999999997542 111
Q ss_pred e-eeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCe
Q 001535 442 R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (1058)
Q Consensus 442 ~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (1058)
. ....+. +...|.+++|++.... +|++++.||+|++|| .+++.+..+.+|.+.|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111232 3467999999986433 799999999999999 888899999999999999999754 4579999999999
Q ss_pred EEEEecCCCCceEEeeCCCCcEEEEEEc-cCCCEEEEEeccCCCCceEEEEeCCCCc-eeeeeecccCcceeEEEEcCCC
Q 001535 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQ 597 (1058)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~i~~i~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 597 (1058)
|++||++++.....+..+ ..+.++.|+ ++|.++++++ .++.|++||+++++ .+..+.+|.. .|..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs----~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS----ADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe----CCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777666644 578899995 5789999988 48999999998875 4667777776 78899997 67
Q ss_pred CEEEEEeCCCcEEEEECCCC------ceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 598 NHFLAVGEDSQIKFWDMDNV------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 598 ~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
..+++++.|+.|++||+..+ ..+..+.. |...+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 44555554 4457889999999999999999999999997543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=253.20 Aligned_cols=294 Identities=17% Similarity=0.233 Sum_probs=251.5
Q ss_pred CCCCcceEEeec-CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcce
Q 001535 331 DDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1058)
Q Consensus 331 ~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1058)
+.+|......+. |.+.|..+.|-++.. .|++|+.|..|++|++..++.-. ...+.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 345566666666 999999999999966 48999999999999998766221 12488889999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeE
Q 001535 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1058)
Q Consensus 410 ~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~ 488 (1058)
+.+.|.++++++++++.|+.+++|++....... +|.+|++.|+++.|..... .+++|+.|.+|++|| ..+.+..
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999876554 7999999999999998776 699999999999999 7777776
Q ss_pred EeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEE
Q 001535 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1058)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1058)
++.. ...+..|+.. ...+++|-.|+.|++||.+..........++ .|+++..+++|..+++++. |..+.+
T Consensus 298 t~l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVLP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred cccc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 6542 3345566553 3578999999999999999998888887766 8999999999999999974 889999
Q ss_pred EeCCCCceeeeeeccc---CcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEE
Q 001535 569 WNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1058)
Q Consensus 569 wd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 645 (1058)
.|+++.+....+.... ....+.+.|+|++.|+++|+.||.|+||++.++++...+...+....|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999999988887532 2246779999999999999999999999999999999998777665799999999999999
Q ss_pred EEECCCcEEEEE
Q 001535 646 VTTADNGFKILA 657 (1058)
Q Consensus 646 ~~~~dg~i~iw~ 657 (1058)
+++.++.+.+|.
T Consensus 448 sadk~~~v~lW~ 459 (459)
T KOG0288|consen 448 SADKQKAVTLWT 459 (459)
T ss_pred cccCCcceEecC
Confidence 999999999993
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=275.91 Aligned_cols=305 Identities=18% Similarity=0.259 Sum_probs=249.3
Q ss_pred CCCcEEEEEeecCCCeEEEEEe--ccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1058)
++..|.+|+.+|||. .+|||+ .||.++||+...--.- .+.++.. .+.+...+..|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 466799999999999 589999 8999999997531100 0011111 22233457789999999999999999
Q ss_pred EEEEeCCCeEEEEEecC----------C-----CcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC
Q 001535 421 VGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~----------~-----~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~ 484 (1058)
||+|++|+.|.||.... | +..+....+.+|...|.+++|+|++. ++++++.|++|.||| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234557889999999999999999 899999999999999 888
Q ss_pred CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCC------CcEEEEEEccCCCEEEEEec
Q 001535 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------HWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~------~~i~~i~~s~~~~~l~~~~~ 558 (1058)
+.+..+.+|.+.|..+.|.| -|++|++-+.|++|++|+....+....+..+. .....+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999955 66999999999999999976655555544432 25788999999999998876
Q ss_pred cCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCC-----CC------------EEEEEeCCCcEEEEECCCCceee
Q 001535 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNILT 621 (1058)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~i~vwd~~~~~~~~ 621 (1058)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .. .+++|+.|++|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666778899999999999999999998 8999999872 11 46778999999999998877766
Q ss_pred EeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
.+..-. ...|.+++|+|||..|..++.||+|.++.++..
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 654322 237999999999999999999999999988654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=249.53 Aligned_cols=282 Identities=20% Similarity=0.285 Sum_probs=239.3
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
..+.|++++|||...+=+|+.+ .-.+.||+..+...... +..-...|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 4568999999997665455543 45889999877655432 333456899999999999999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEe
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 501 (1058)
+|...|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977755555 57899999999999999887 899999999999999 55555568999999999999
Q ss_pred ecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc-eeeee
Q 001535 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTY 580 (1058)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 580 (1058)
|+|. ++.++++|+.||.|++||.+.......--.|+.+|.++.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 9876 458999999999999999998866666667899999999999999999997 6789999999654 45555
Q ss_pred ecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
..|.. .|+|+++..++..|++++-|+.+++||..+.+.+..+...+ +|.+++.+|++..++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehh
Confidence 55666 89999999999999999999999999999999998887654 6999999999999999999999877643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=241.21 Aligned_cols=290 Identities=19% Similarity=0.314 Sum_probs=240.3
Q ss_pred CCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEE
Q 001535 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1058)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1058)
..|+.....+.|.+.|.+|... ++ .+.+|+.||.++|||.. |+... .+.||+++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceee
Confidence 3456667778899999999999 55 47899999999999975 55543 28899999998
Q ss_pred EEECCCC---CEEEEEeCCCeEEEEEecCCCcce-eeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC--
Q 001535 412 VAWSPDG---NYVGVAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-- 484 (1058)
Q Consensus 412 l~~spdg---~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~-- 484 (1058)
++|--.. ..+++++.|.++++|.++.++... ....-.||...|.+++..++|. .+++|+.|.+|+||+ ...
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 8885433 369999999999999998775432 2223349999999999999999 899999999999998 211
Q ss_pred -----------------------CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcE
Q 001535 485 -----------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1058)
Q Consensus 485 -----------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i 541 (1058)
.++..+.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+.. ....
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 24567899999999999965 25899999999999999999888776654 4568
Q ss_pred EEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc---eeeeeecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 001535 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNV 617 (1058)
Q Consensus 542 ~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~ 617 (1058)
.++..+|..++|++++. +..+++||.+++. ..++|.+|.+ -|..+.|+|.. ..|++|+.|+++++||+++-
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999985 8999999998763 4578889988 89999999976 56778999999999999987
Q ss_pred c-eeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 618 N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 618 ~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
. ++..+..| ...|.++.|+. +..+++|+.|.+++|+.-
T Consensus 379 k~plydI~~h--~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 379 KAPLYDIAGH--NDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCcceeeccC--CceEEEEeccC-CceEEeccCcceEEEecc
Confidence 7 88888755 45899999974 568999999999999864
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=228.89 Aligned_cols=291 Identities=15% Similarity=0.282 Sum_probs=248.2
Q ss_pred eEEeeCCCCcEEEEEEcc---CCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCC
Q 001535 531 RVDYDAPGHWCTTMLYSA---DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1058)
Q Consensus 531 ~~~~~~~~~~i~~i~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 607 (1058)
.++..+|..+|..++|+| +|-+|++++ +|+.-.+-+-++|.-+.+|.+|.+ .|...+++.+....++++.|-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~----kd~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISAS----KDGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEec----cCCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccc
Confidence 445667888999999985 788888887 477777778889999999999998 888899988888889999999
Q ss_pred cEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeee
Q 001535 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1058)
Q Consensus 608 ~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 687 (1058)
+-++||.-+|..+..+.. .| -|..++|+.|.++|++|+.+..+||||++........+
T Consensus 82 takvw~a~tgdelhsf~h-kh--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~------------------- 139 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEH-KH--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI------------------- 139 (334)
T ss_pred hhhhhhhhhhhhhhhhhh-hh--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh-------------------
Confidence 999999999999988864 33 68999999999999999999999999986642211111
Q ss_pred ccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccE
Q 001535 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1058)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1058)
.+|.+.|
T Consensus 140 -------------------------------------------------------------------------~ghtg~I 146 (334)
T KOG0278|consen 140 -------------------------------------------------------------------------SGHTGGI 146 (334)
T ss_pred -------------------------------------------------------------------------cCCCCcc
Confidence 2288889
Q ss_pred EEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEE
Q 001535 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1058)
Q Consensus 768 ~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1058)
..+.|....+.+++.+.|++||+||..+ |..+.. + ....+|+++.+++||++|.
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rT----------------------gt~v~s-L---~~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRT----------------------GTEVQS-L---EFNSPVTSLEVSQDGRILT 200 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEecc----------------------CcEEEE-E---ecCCCCcceeeccCCCEEE
Confidence 9999999999999999999999998654 332221 1 1577899999999999999
Q ss_pred EEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEe-cccCCCeeEEEEcCC
Q 001535 848 SATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFSTS 926 (1058)
Q Consensus 848 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s~d 926 (1058)
++..+.|.+||..+..++..+.. ...|.+..++| +..+++.|++|+.++.||..+++.+..+ ++|-++|.||.|+||
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred EecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence 99999999999999999988874 45689999999 7889999999999999999999988886 899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce
Q 001535 927 LNILVSSGADAQLCVWSIDTWEK 949 (1058)
Q Consensus 927 ~~~l~s~s~Dg~i~iwd~~~~~~ 949 (1058)
|...++||.||+|++|....++.
T Consensus 279 GE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999887653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=223.67 Aligned_cols=287 Identities=12% Similarity=0.135 Sum_probs=237.5
Q ss_pred EEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC
Q 001535 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1058)
Q Consensus 338 ~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1058)
...-+|+.+++-+.|+.+|. ||.++++|.++.||-...|+.+.+ +.||++.|.|+..+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 34456999999999999999 899999999999999989998875 8899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeC-----CCcEEEEe-c-------CC
Q 001535 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIKVWE-L-------SG 484 (1058)
Q Consensus 418 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~-----d~~i~iwd-~-------~~ 484 (1058)
.+++++|+.|.++++||+++|+++.. + .-..+|..+.|+++|. +++.+.+ .+.|.++| . ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 99999999999999999999998763 3 3466899999999999 4444432 35788998 4 34
Q ss_pred CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE-EeeCCCCcEEEEEEccCCCEEEEEeccCCCC
Q 001535 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1058)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~ 563 (1058)
.+...+..+...++.+-|.+. +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. |
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----D 211 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----D 211 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----C
Confidence 557788888899999999774 4799999999999999999876554 45678889999999999999999984 8
Q ss_pred ceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEE--EECCCCc------------eeeEeccCCCC
Q 001535 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF--WDMDNVN------------ILTSTDAEGGL 629 (1058)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v--wd~~~~~------------~~~~~~~~~~~ 629 (1058)
.+-++||..+.+.++++.... ++++.+++|...+++.|+.....-| =+.+.|+ .+.. ..+|.
T Consensus 212 ttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr--vkGHF 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR--VKGHF 287 (327)
T ss_pred ccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc--ccccc
Confidence 899999999999999998764 7999999998888888764322212 1222222 2222 34678
Q ss_pred CCCceEEeeCCCCEEEEEECCCcEEEEEccC
Q 001535 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1058)
Q Consensus 630 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1058)
++|++++|+|+|+..++|+.||.|++.....
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 8999999999999999999999999986654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=258.76 Aligned_cols=299 Identities=16% Similarity=0.229 Sum_probs=215.0
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC---CC
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg 418 (1058)
.|.+.|+++.||+||+ |||+|+.||.|+||.+...+.... +.......+.. +.+ .+.+.-+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~------~~~~~~~~~~~--~~~-~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV------AEGDSSCMYFE--YNA-NSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc------cccccchhhhh--hhh-ccccCccccccccccc
Confidence 5999999999999999 699999999999999976433210 00000000000 000 00011111111 01
Q ss_pred C--EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccC
Q 001535 419 N--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1058)
Q Consensus 419 ~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~ 495 (1058)
+ ..-.+.....+.+-+..-.-..+.+..+.||.+.|.++.||.++ +|++++.|++|++|+ ....++..|. |.+
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11122222222221111111123344688999999999999877 799999999999999 7788888877 999
Q ss_pred CeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc
Q 001535 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1058)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1058)
.|+|++|+|.. .+++++|+.||.||+|++...+.. ....-..-|++++|.|||+..++|+. +|..++|+....+
T Consensus 411 fVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccC-CCcEeecccccceEEeecCcCeeE-eehhhhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 99999999984 589999999999999998654443 33334478999999999999999996 8999999998877
Q ss_pred eeeeeecc-------cCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEE
Q 001535 576 IKRTYAGF-------RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1058)
Q Consensus 576 ~~~~~~~~-------~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 647 (1058)
....+.-+ ....|+.+.|.|.. ..+++.+.|..|+|+|..+..++..+.+......-....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 76654421 11258889888744 56889999999999999999998888866555555678999999999999
Q ss_pred ECCCcEEEEEccC
Q 001535 648 TADNGFKILANAI 660 (1058)
Q Consensus 648 ~~dg~i~iw~~~~ 660 (1058)
++|..|++|+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999854
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=218.34 Aligned_cols=274 Identities=15% Similarity=0.219 Sum_probs=234.8
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC-CCCE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 420 (1058)
+|...|.+|+|+-+|++ ||+|+.|+++.+|++...+.... -...+|.+.|..++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 58899999999999995 89999999999999988755432 23778999999999998 5779
Q ss_pred EEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeE
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 499 (1058)
+++++.|.+|++||+..+++...+ .. .+.=.-+.|+|+|. +++.++.|..|.+.| .+.+.....+ ..-.+.-
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i---~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARI---ET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEe---ec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence 999999999999999999887643 22 33345688999999 899999999999999 6666554443 4455777
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeee
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1058)
++|+. ++++++....-|.|.|......+....+..|...+.|+.|+|+|+++|+|+. |..+.+||+...-+++.
T Consensus 153 ~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 88874 3456766677799999999988999999999999999999999999999995 89999999999999999
Q ss_pred eecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECC
Q 001535 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1058)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 650 (1058)
+..+.- +|+.+.|+-+|++|+++++|..|-|-++++|..+..+...+ +...|+|+|...+||.+.+|
T Consensus 227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 887775 89999999999999999999999999999999999987654 57899999999999998775
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=263.94 Aligned_cols=294 Identities=17% Similarity=0.270 Sum_probs=252.1
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCC
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1058)
.|+....+......-.+...|.|..|. +| .+++|+.|++|++||..++..+.. .+.||.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~ 249 (537)
T KOG0274|consen 191 NWRKLFRRGYKVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHF 249 (537)
T ss_pred cccccccccceeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCC
Confidence 444444444333333478889999999 54 489999999999999998877642 288999
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCC
Q 001535 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1058)
Q Consensus 407 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~ 485 (1058)
+.|.++++..-+.+|++|+.|.+++|||..+|++.. .+.+|...|.++...+. ++++|+.|.+|++|+ .++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcc
Confidence 999999998888999999999999999999999877 68899999999988653 689999999999999 8899
Q ss_pred eeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCce
Q 001535 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1058)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~ 565 (1058)
.+..+.+|.++|.++... +.++++|+.|++|++||+.+++....+.+|...|.++.+.+. ..+++++. |+.
T Consensus 323 ~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~ 393 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTT 393 (537)
T ss_pred eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccc
Confidence 999999999999999873 579999999999999999999999999999999999988766 88888885 789
Q ss_pred EEEEeCCCC-ceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEE
Q 001535 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1058)
Q Consensus 566 i~~wd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 644 (1058)
|++||++++ +++.++.+|.. .+..+. ..+++|++++.|++|++||..+++++..+... +...|.++++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceE
Confidence 999999999 99999999987 554433 45789999999999999999999999999874 34467777765 4689
Q ss_pred EEEECCCcEEEEEccCCcc
Q 001535 645 AVTTADNGFKILANAIGLR 663 (1058)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~ 663 (1058)
++++.++.+++||+.++..
T Consensus 468 l~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEEecCCeeEEEecccCch
Confidence 9999999999999998843
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=219.64 Aligned_cols=234 Identities=14% Similarity=0.236 Sum_probs=202.7
Q ss_pred cccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEE
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 480 (1058)
.+.||..+++.+.++.+|.+|.+++.|.++.||-..+|+.+. ++.||.+.|+|++...+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 388999999999999999999999999999999998898776 7899999999999999999 89999999999999
Q ss_pred e-cCCCeeEEeecccCCeeEEeecccCCceEEEEEee-----CCeEEEEecC-------CCCceEEeeCCCCcEEEEEEc
Q 001535 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (1058)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~~wd~~-------~~~~~~~~~~~~~~i~~i~~s 547 (1058)
| .+|+++..+. -..+|..+.|++ +|++++.+.. .+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999999887 467899999976 4456555543 3679999987 344566777788899999999
Q ss_pred cCCCEEEEEeccCCCCceEEEEeCCCCc-eeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccC
Q 001535 548 ADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1058)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 626 (1058)
|-++.|++|. .++.|..||+++|+ .+..-..|.. .|+.++++++..++++++.|.+-++||..+-+.++++...
T Consensus 157 ~l~~~ii~Gh----e~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGH----EDGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEec----CCCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 9999999997 59999999999985 4555566665 8999999999999999999999999999999999988653
Q ss_pred CCCCCCceEEeeCCCCEEEEEECC
Q 001535 627 GGLPNLPRLRFSKEGNLLAVTTAD 650 (1058)
Q Consensus 627 ~~~~~v~~v~~s~~~~~l~~~~~d 650 (1058)
.+|++.+++|....++.|+..
T Consensus 232 ---~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---ccccceecccccceEEecCCc
Confidence 379999999987777777643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=223.88 Aligned_cols=273 Identities=17% Similarity=0.261 Sum_probs=222.3
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCC-CccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
-.+.|.+++|||....++++||-||+|++|+++.. .... +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 56799999999966668889999999999999873 3321 2366799999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEE
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 500 (1058)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+.+|+|||.|++|+.|| +...++.++. -.++++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998544 377899999999999877655899999999999999 8888887776 46678887
Q ss_pred eecccCCceEEEEEeeCCeEEEEecCCCCceEEee--CCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC--ce
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TI 576 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 576 (1058)
..- ..+++++..++.|.+|+++......... .-...++|++..+|.+..+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 652 2588999999999999997655443221 12337889999898888888875 888888888776 45
Q ss_pred eeeeecccC--------cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEE
Q 001535 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1058)
Q Consensus 577 ~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 648 (1058)
-.+|+.|.. ..|+.++|+|....|+++|.||++.+||-.....+.....+ ..+|+|++|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 556677763 24677999999999999999999999998887777776644 44899999999999988764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=256.28 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=221.8
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC-CCCEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 421 (1058)
|-..|.....++|+.. +++++.+.....|+...+..+. +.......+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 3456777788889774 5666778888889876553321 11111111112234789999999999999 89999
Q ss_pred EEEeCCCeEEEEEecCCCc----ceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCC
Q 001535 422 GVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~ 496 (1058)
|+|+.|++|++||+.++.. ...+..+.+|...|.+++|+|++.. +|++|+.|++|+||| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1233468899999999999998644 799999999999999 888889999999999
Q ss_pred eeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCc-EEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc
Q 001535 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1058)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1058)
|.+++|++ ++.+|++++.|++|++||++++.....+..|.+. ...+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999976 6789999999999999999998887777777653 45678899988888877655568999999998754
Q ss_pred -eeeeeecccCcceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCC
Q 001535 576 -IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 576 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1058)
.......+....+....|+++++.+++++ .|+.|++||+.+++........ ...++..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccc
Confidence 33444434333455677899999999887 5999999999999887765443 2346788888885
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=233.42 Aligned_cols=249 Identities=16% Similarity=0.256 Sum_probs=213.6
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeee-----eecccccCeEEEEeecCCCeeEEEEEeCCCcEE
Q 001535 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-----QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1058)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~-----~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 478 (1058)
|...-+.|..|||||+||++|+.||.|.|||..+|+..+.++ .+--+..+|.|+.|+.|.. .+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 456778899999999999999999999999999987543221 2445788999999999999 899999999999
Q ss_pred EEe-cCCCeeEEee-cccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEE
Q 001535 479 VWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1058)
Q Consensus 479 iwd-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 556 (1058)
+|. .+|.++++|. .|...|+++.|+. |+..+++++.|.++++--+..++....+.+|...|+...|.+||..++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999 9999999997 8999999999965 66889999999999999999999999999999999999999999999999
Q ss_pred eccCCCCceEEEEeCCCCceeeeeeccc-CcceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCCCCc
Q 001535 557 GTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLP 633 (1058)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~ 633 (1058)
+. |+.|++|+..+.+++.+|+... +..|..+..-| +...++++...++|+|.++. |+.+..+.. ....+...
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFI 441 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceE
Confidence 85 9999999999999999987543 33566666555 45788999999999999984 666666543 22233566
Q ss_pred eEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 634 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+++.+|.|.++.+.+.|+.++.|...+|
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 7889999999999999999999988776
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=226.52 Aligned_cols=293 Identities=17% Similarity=0.248 Sum_probs=234.1
Q ss_pred ccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecC------------CC---cceeeeeecccccCeEEEEeecCCC
Q 001535 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SN---DLRQHSQIDAHVGAVNDLAFAYPNK 464 (1058)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~------------~~---~~~~~~~l~~h~~~v~~l~~s~d~~ 464 (1058)
..+..|.+++.+.+|||||.++|+|+.|..|+|.|++. |. .--.+.+|..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34778999999999999999999999999999999861 11 1123447889999999999999999
Q ss_pred eeEEEEEeCCCcEEEEe-cCCCee--EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEee---CCC
Q 001535 465 LLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APG 538 (1058)
Q Consensus 465 ~~~l~s~~~d~~i~iwd-~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~ 538 (1058)
.|++|+.|++|+++| ...... ........+|.++.|+|+ |.+|+.|....++++||+++.++-..-. .|.
T Consensus 186 --ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 186 --ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred --eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 899999999999999 332222 222234668999999885 5799999999999999999887766443 355
Q ss_pred CcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeee-cccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001535 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1058)
Q Consensus 539 ~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 617 (1058)
..|+++.+++.|++.++++ .||.|++||--+++++.++. .|.+..|.+..|..+++++++.|.|..+++|.+.++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaS----kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTAS----KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cceeEEEecCCccEEEEec----cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 6899999999999999998 59999999999999999886 455567899999999999999999999999999999
Q ss_pred ceeeEeccCCCCCC---CceEEeeCCCCEEEEEEC-CCcEEEEEccCCccccccccCCCcccccCcccceeeeecccccc
Q 001535 618 NILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1058)
Q Consensus 618 ~~~~~~~~~~~~~~---v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1058)
+.+..+.+.+..+. -+...|+....+++.-.. .+.+.-||..+.
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta-------------------------------- 385 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA-------------------------------- 385 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch--------------------------------
Confidence 99998876543222 234556666666555433 456777777654
Q ss_pred ccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEe
Q 001535 694 SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1058)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1058)
..+.+|.+ +|.+.++.+.-+
T Consensus 386 ------------------------------------------dr~~l~sl------------------gHn~a~R~i~HS 405 (430)
T KOG0640|consen 386 ------------------------------------------DRVALLSL------------------GHNGAVRWIVHS 405 (430)
T ss_pred ------------------------------------------hhhhhccc------------------CCCCCceEEEeC
Confidence 12222322 288999999999
Q ss_pred cCcceEEEeeccCeeEEee
Q 001535 774 NSAVGLLALGSNGVQKLWK 792 (1058)
Q Consensus 774 ~~~~~l~~~~~dg~v~vw~ 792 (1058)
|.+..+++++.|-..++|-
T Consensus 406 P~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 406 PVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCceeeecccceeeeee
Confidence 9999999999999999994
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-26 Score=217.22 Aligned_cols=281 Identities=15% Similarity=0.236 Sum_probs=230.3
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
..+.|.++.|+++|. ++++++.|.+++|||..+|+++.+ +..+...|..++|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 477999999999999 467778899999999999998764 445667888999988877777
Q ss_pred EEeC--CCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeE
Q 001535 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1058)
Q Consensus 423 s~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 499 (1058)
.++. |.+|+..++.+.+.++ .+.||...|.+++.+|-+. .+++++.|++|++|| ...++...+.....++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 8899999999999887 6889999999999999998 899999999999999 6666666555444444
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCc--eEEee---CCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYD---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~---~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1058)
+|| ++.|-++|++...+.|++||++.... -..+. ......+.+.|||||+.++.+. ..+.+++.|.-+|
T Consensus 146 ~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDG 219 (311)
T ss_pred eeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCC
Confidence 455 45777888888888999999987532 22333 2355889999999999999887 4888999999999
Q ss_pred ceeeeeecccCcc--eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCc
Q 001535 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1058)
Q Consensus 575 ~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 652 (1058)
..+.++.++.... -...+|+||++++++|+.||+|.+|++++|..+..+... +..++.|+.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998876532 235789999999999999999999999999999998875 455789999999866666654 46
Q ss_pred EEEEEcc
Q 001535 653 FKILANA 659 (1058)
Q Consensus 653 i~iw~~~ 659 (1058)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7777543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=227.16 Aligned_cols=283 Identities=18% Similarity=0.322 Sum_probs=234.4
Q ss_pred ccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeecccCCeeEEeecccC-CceEEEEEeeCCeEEEEecCC
Q 001535 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT 527 (1058)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~ 527 (1058)
.|.+.|.++... ++ .+++|+.||.+++||..|+.+..+.||.++|.+++|.... ....+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 588999999887 55 7999999999999999999999999999999988875432 224699999999999999887
Q ss_pred CCceE----EeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCC-------------------------CCceee
Q 001535 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (1058)
Q Consensus 528 ~~~~~----~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~~ 578 (1058)
+.... ...+|...|.++...++|..+++++. |..|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 65543 34488889999999999999999996 8999999932 233556
Q ss_pred eeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
++.+|.. .|..+.|++ ...+++++-|.+|+.||+.++.....+.... .++|+..+|..++|++|+.|..+++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7788887 899999988 6789999999999999999999988876432 5899999999999999999999999997
Q ss_pred cCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCC
Q 001535 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1058)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 738 (1058)
+++..
T Consensus 330 R~~~g--------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 330 RTGDG--------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 65410
Q ss_pred CcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCC
Q 001535 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1058)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~ 818 (1058)
.+
T Consensus 335 ---------------------------s~--------------------------------------------------- 336 (423)
T KOG0313|consen 335 ---------------------------SV--------------------------------------------------- 336 (423)
T ss_pred ---------------------------ce---------------------------------------------------
Confidence 00
Q ss_pred ceeeeeccCCCCCCCeeEEEEecCCC-EEEEEe-CCcEEEEECCCce-EEEEecCCCCCeeEEEEecCCCcEEEEEECCC
Q 001535 819 LLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1058)
Q Consensus 819 ~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg 895 (1058)
....+.+ |...|.++.++|... .|++++ |+++++||+++.+ ++..+.+|...|.++.|. ++..+++|+.|.
T Consensus 337 --v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 337 --VSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADN 410 (423)
T ss_pred --eEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcc
Confidence 0001222 777888888888654 557777 9999999999887 899999999999999998 577999999999
Q ss_pred CEEEEEcc
Q 001535 896 TIHIYNVR 903 (1058)
Q Consensus 896 ~v~iwd~~ 903 (1058)
+|+|+...
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-27 Score=247.84 Aligned_cols=278 Identities=15% Similarity=0.228 Sum_probs=236.0
Q ss_pred EEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeC
Q 001535 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1058)
Q Consensus 347 V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 426 (1058)
..-++||..+ .||+|. ...|++|+..+++.... ..-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 3456788555 578874 56899999998875432 2223789999999999999999999
Q ss_pred CCeEEEEEecCCCcceeeeeecc-cccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEE-eecccCCeeEEeec
Q 001535 427 KHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-FEGHEAPVYSICPH 503 (1058)
Q Consensus 427 dg~i~iwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~-~~~h~~~v~~~~~~ 503 (1058)
+|.|.|||..+.+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999887776 5666 99999999998 44 789999999999999 55555444 89999999999996
Q ss_pred ccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccC-CCEEEEEeccCCCCceEEEEeCCCCceeeeeec
Q 001535 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1058)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1058)
+ |+.++++|+.|+.+.+||.........+..|...|.+++|+|- ...||+|+. ..|++|++||..+++.+.....
T Consensus 311 ~--d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 P--DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred C--CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 6 7789999999999999999888899999999999999999994 556777663 4699999999999999988776
Q ss_pred ccCcceeEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccC
Q 001535 583 FRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1058)
Q Consensus 583 ~~~~~i~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1058)
.. .|+.+.|++..+.|+++ ..++.|.||+..+.+.+..+..| ...|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 54 59999999998877774 46789999999998888888755 55899999999999999999999999999865
Q ss_pred C
Q 001535 661 G 661 (1058)
Q Consensus 661 ~ 661 (1058)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 3
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-26 Score=234.82 Aligned_cols=604 Identities=13% Similarity=0.179 Sum_probs=326.2
Q ss_pred cccCCCcceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCcce---eeeeecccccCeEEEEeecCCCeeEEEEEeCCCc
Q 001535 401 IFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~---~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 476 (1058)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-... .-..+.+..-.|.++.|+|.... ++++ +..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s-~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILAS-GAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEe-ccCce
Confidence 4889999999999999 67799999999999999998543221 11123334457899999998774 4444 45899
Q ss_pred EEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE-EeeCCCC-cEEEEEEccCCCEE
Q 001535 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGH-WCTTMLYSADGSRL 553 (1058)
Q Consensus 477 i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~-~i~~i~~s~~~~~l 553 (1058)
++||| .+++.+..+.+|.+.|.++.| +.||.++++.+.|+.|++||.+...... ....|++ .-..+.|..+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999 999999999999999999999 4588999999999999999998765543 3444544 44567777776688
Q ss_pred EEEeccCCCCceEEEEeCCCC-ceeeeeecccCcceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeE--eccCCCC
Q 001535 554 FSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTS--TDAEGGL 629 (1058)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~--~~~~~~~ 629 (1058)
++.+.+......|++||.+.. ..++++.......+..--|.||.+.|+.++ .+.+++.+.+...++... +.....
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle- 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE- 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch-
Confidence 877765556678999998764 456666554444455567889888776655 678888888866543211 100000
Q ss_pred CCCceEEeeCCCCEEEEEEC---------------------------------------CC-cEEEEEccCCcccccccc
Q 001535 630 PNLPRLRFSKEGNLLAVTTA---------------------------------------DN-GFKILANAIGLRSLRAVE 669 (1058)
Q Consensus 630 ~~v~~v~~s~~~~~l~~~~~---------------------------------------dg-~i~iw~~~~~~~~~~~~~ 669 (1058)
......++-|...+-+..+. -+ .-.-|-..++....+.-.
T Consensus 309 ~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl 388 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSL 388 (1012)
T ss_pred hhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCcccccccccc
Confidence 00011111111100000000 00 000111111100000000
Q ss_pred CCCcccccC----cccceeeeeccccc---cccCCC----CcceeeccCC-CCCCcccc-CCCC-------CCCCCC---
Q 001535 670 NPPFEALRT----PIESVALKVSASSA---VSSGTP----ANCKVERSSP-VRPSPIIN-GVDP-------TSRSMD--- 726 (1058)
Q Consensus 670 ~~~~~~~~~----~i~~~~~s~~g~~l---~~~~~~----~~~~~~~~~~-~~~~~~~~-~~~~-------~~~~~~--- 726 (1058)
......+.. ++..-..+..+.+. +....+ +........+ ......+. +... .-.+.+
T Consensus 389 ~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~ 468 (1012)
T KOG1445|consen 389 APAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHT 468 (1012)
T ss_pred CchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccC
Confidence 000000000 00000000000000 000000 0000000000 00000000 0000 000000
Q ss_pred -C--CcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEE-----EEE----------------ecCcceEEEe
Q 001535 727 -K--PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR-----LLY----------------TNSAVGLLAL 782 (1058)
Q Consensus 727 -~--~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----l~~----------------s~~~~~l~~~ 782 (1058)
+ .=.+-+....+..-.. ......-|........+.. -+| +.......+.
T Consensus 469 ~~~dad~~~g~sS~~s~~~~-------~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~ 541 (1012)
T KOG1445|consen 469 PNADADSTQGNSSPISTISP-------EPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQ 541 (1012)
T ss_pred CCcccccccCCCCCccccCC-------CcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccc
Confidence 0 0000000000000000 0000000000000000000 000 0000000000
Q ss_pred eccCeeEEeeeeccccCCCCcccccccceeeccCCCceeee-----eccCCCCCCCeeEEEEecCCCEEEEE---eCCcE
Q 001535 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN-----DVAGVNLEEAVPCIALSKNDSYVMSA---TGGKI 854 (1058)
Q Consensus 783 ~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~dg~~la~~---~dg~i 854 (1058)
+-...-.+ .|.+ .-+.-..|..-.. .+...+..-+-.+=-|..+.+.+|+- +.|.|
T Consensus 542 s~r~~s~v----------~G~i------SKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~i 605 (1012)
T KOG1445|consen 542 SVRPKSCV----------VGQI------SKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVI 605 (1012)
T ss_pred ccccccee----------eccc------hheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceE
Confidence 00000000 0000 0000011110000 01110011111222344566676653 47899
Q ss_pred EEEECCCce-EE-EEec--CCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCc-------eeeeEecccCCCeeEEEE
Q 001535 855 SLFNMMTFK-VM-TTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-------EVKSKLKGHQKRITGLAF 923 (1058)
Q Consensus 855 ~vwd~~~~~-~~-~~~~--~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~-------~~~~~~~~h~~~V~~l~~ 923 (1058)
.||++.... +- ..+. .....|+.+.|.|.|...||++++||.|++|.+..+ .....+.+|...|+++.|
T Consensus 606 ai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRf 685 (1012)
T KOG1445|consen 606 AIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRF 685 (1012)
T ss_pred EEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEe
Confidence 999987432 11 1111 134569999999999999999999999999999765 345678899999999999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEE-EECCeEEEEECCCCeeee-ee
Q 001535 924 STS-LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIR-QW 1000 (1058)
Q Consensus 924 s~d-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~-~~d~~v~v~d~~~~~~~~-~~ 1000 (1058)
+|= ...|++++.|.+|++||+.+++....+. +|. +.|..++|||||+.+|+ +.||+++||+-++++... .-
T Consensus 686 HPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-----gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 686 HPLAADVLAVASYDSTIELWDLANAKLYSRLV-----GHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG 759 (1012)
T ss_pred cchhhhHhhhhhccceeeeeehhhhhhhheec-----cCc-CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccC
Confidence 984 4689999999999999999987554443 444 89999999999999999 699999999988776433 22
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEEEeCCC----cEEEEeCCCCe
Q 001535 1001 TPQDALSAPISCAVYSCNSQLVFATFCDG----NIGVFDADTLR 1040 (1058)
Q Consensus 1001 ~~~~~~~~~v~~l~~s~dg~~l~t~~~dg----~i~iw~~~~~~ 1040 (1058)
.... ...-..+.|..||+++++.+.|+ .|.+||..+..
T Consensus 760 ~gpv--gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 760 KGPV--GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred CCCc--cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 2222 34556788999999998877554 58899887654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=217.51 Aligned_cols=283 Identities=18% Similarity=0.247 Sum_probs=226.6
Q ss_pred EEEEeecCCCeEEEEEe-------ccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC-CC
Q 001535 348 ISMDFHPSHQTLLLVGS-------SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GN 419 (1058)
Q Consensus 348 ~~v~~sp~g~~lla~gs-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~ 419 (1058)
.++.|||--...||++. ..|.+.|-++..++.+.. +.- -.-.+.+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s---------------~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQS---------------YDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEe---------------eecccceeEeeecCCCcc
Confidence 57889995322234432 357899999875554432 111 123578999999995 56
Q ss_pred EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCee
Q 001535 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1058)
Q Consensus 420 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~ 498 (1058)
.+++++.||++++||+... -..+..++.|...|.++.|++-.++ .++++|.|++|++|+ ..++.++++.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7788999999999995433 3345568899999999999998776 677889999999999 88899999999999999
Q ss_pred EEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCC-EEEEEeccCCCCceEEEEeCCCC-ce
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEG-TI 576 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~-~~ 576 (1058)
..+|+|. ..+.+++++.|+++++||++.......+..|...+.++.|+.-.. .+++++ .|+.|+.||+++. .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcccc
Confidence 9999987 457999999999999999999988888999999999999998554 555665 4999999999875 46
Q ss_pred eeeeecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCc-eeeEeccCCCCCCCceEEeeC-CCCEEEEEECCCcE
Q 001535 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (1058)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 653 (1058)
+..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...| ..-+..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 677777765 89999999965 677889999999999998543 44444444 44688899998 77899999999999
Q ss_pred EEEEc
Q 001535 654 KILAN 658 (1058)
Q Consensus 654 ~iw~~ 658 (1058)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=235.67 Aligned_cols=304 Identities=18% Similarity=0.255 Sum_probs=234.7
Q ss_pred CCCcceEEeec-CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceE
Q 001535 332 DLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1058)
Q Consensus 332 ~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1058)
..|......+. |+..|.++++.|.|.+ +++|+.|.+|++||+....... ..|+. +.......|.
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~-~~fr~-------------l~P~E~h~i~ 218 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASM-RSFRQ-------------LQPCETHQIN 218 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccc-hhhhc-------------cCcccccccc
Confidence 35666666776 6788999999999996 8999999999999997543221 11221 1333456899
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCcc---------eeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL---------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 411 ~l~~spdg~~las~~~dg~i~iwd~~~~~~~---------~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+++||+.|..|++.+.....+|+|-...+.. +.+..-.||...++|.+|+|+.+. .|+|++.||+++|||
T Consensus 219 sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 219 SLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWD 297 (641)
T ss_pred eeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEe
Confidence 9999999999999988899999997654332 223345699999999999999887 799999999999999
Q ss_pred -cC-CCeeEEee-----cccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE---EeeCCCC--cEEEEEEccC
Q 001535 482 -LS-GRKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGH--WCTTMLYSAD 549 (1058)
Q Consensus 482 -~~-~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~--~i~~i~~s~~ 549 (1058)
.+ ...+..+. +..-++++++|++ +|..||+|+.||.|.+|+........ .-..|.. .|+|++||+|
T Consensus 298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred cCCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 33 33333332 3455788888865 77899999999999999975543322 2334444 8999999999
Q ss_pred CCEEEEEeccCCCCceEEEEeCCCC-ceeeeeecccC-cceeEEEEcCCCCEEEEEe------CCCcEEEEECCCCceee
Q 001535 550 GSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILT 621 (1058)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~ 621 (1058)
|++|++-+ .|..+++||++.. +++.+..+-.. ..-+.++|+|+.+.|++|. ..|.+++||..+.+.+.
T Consensus 376 g~~LlSRg----~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 376 GNYLLSRG----FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred cchhhhcc----CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 99999987 4999999999875 34444444322 2345589999999999986 45789999999999999
Q ss_pred EeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEcc
Q 001535 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
.+.... ..|..+.|+|.-+.++.|+.||++++|--.
T Consensus 452 ki~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 452 KIDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred EecCCC--ceEEEEeecchhhheeeecCCCceEEEECc
Confidence 988764 368899999998899999999999987543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=212.14 Aligned_cols=275 Identities=12% Similarity=0.199 Sum_probs=231.6
Q ss_pred eeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeC-CCCEEEEEECCCcEEEE
Q 001535 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKIL 656 (1058)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw 656 (1058)
+.+.+|.+ .+.+++|+-+|..+++|+.|+++.+|++...+........+|...|-.++|+| ....+++++.|.+|++|
T Consensus 14 r~~~~~~~-~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQ-KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhh-cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 44556665 78999999999999999999999999999998888888888888899999998 56799999999999999
Q ss_pred EccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCC
Q 001535 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1058)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 736 (1058)
|...++...+..
T Consensus 93 d~r~~k~~~~i~-------------------------------------------------------------------- 104 (313)
T KOG1407|consen 93 DIRSGKCTARIE-------------------------------------------------------------------- 104 (313)
T ss_pred EeccCcEEEEee--------------------------------------------------------------------
Confidence 998763222110
Q ss_pred CCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccC
Q 001535 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1058)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~ 816 (1058)
..+.-.-+.++|+|.++++++.|..|.+.|......
T Consensus 105 --------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~------------------ 140 (313)
T KOG1407|consen 105 --------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI------------------ 140 (313)
T ss_pred --------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccce------------------
Confidence 112224578999999999999998888877543211
Q ss_pred CCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCC
Q 001535 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1058)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg 895 (1058)
+. .......+..++|+.++.++.... .|+|.|......+++..+..|.....|+.|+| +|+++|+|+.|.
T Consensus 141 ----~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADA 211 (313)
T KOG1407|consen 141 ----VN----EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADA 211 (313)
T ss_pred ----ee----hhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccc
Confidence 11 111455677889988777766555 69999999999999999999999999999999 999999999999
Q ss_pred CEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCC
Q 001535 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1058)
Q Consensus 896 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 975 (1058)
.+.+||+..--+++.+..+.-+|..|.||.||++||+||.|..|-|=++++|..+..+... ++...++|.|..
T Consensus 212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-------~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 212 LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-------GPTFTVAWHPKR 284 (313)
T ss_pred eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-------CCceeEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999987777665 788999999999
Q ss_pred CEEEEE
Q 001535 976 VRMLVV 981 (1058)
Q Consensus 976 ~~l~~~ 981 (1058)
.+||.+
T Consensus 285 ~LLAyA 290 (313)
T KOG1407|consen 285 PLLAYA 290 (313)
T ss_pred ceeeEE
Confidence 999985
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=250.46 Aligned_cols=272 Identities=15% Similarity=0.241 Sum_probs=213.0
Q ss_pred CCcccEEEEEEecCcceEEEeeccCeeEEeeeecccc---------------CCCC--------------cccccc----
Q 001535 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ---------------NPSG--------------KATASA---- 808 (1058)
Q Consensus 762 ~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~---------------~~~g--------------~~~~~~---- 808 (1058)
.|.+.|+++.|++||++|+++|.||.|+||.+...+. ...+ ......
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4999999999999999999999999999999876110 0000 000000
Q ss_pred -cceeeccCCCceee---eeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecC
Q 001535 809 -VPQHWLPSSGLLMA---NDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1058)
Q Consensus 809 -~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~ 883 (1058)
...+.......... ..+.| |...|..+.||.++ +|.+++ |.+|++|++...++++.|. |..-|+|++|+|-
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G--Ht~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG--HTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhc--cchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 00011111111111 12334 99999999999886 555666 9999999999999999997 9999999999999
Q ss_pred CCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCC
Q 001535 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP 963 (1058)
Q Consensus 884 ~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 963 (1058)
|.+++++|+-||.|+||++...+.+.-...+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+...
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 9999999999999999999998876555544 789999999999999999999999999999987777666654433221
Q ss_pred --CCceEEEEcCCCC--EEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001535 964 --TGDTRVQFNADQV--RMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1058)
Q Consensus 964 --~~v~~l~~s~d~~--~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~ 1039 (1058)
..|+.++|.|... .|+++.|.+|+|||.++...+..+.+... ...=....|+.||++|++|++|..|++|++..-
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 4699999998544 78888999999999998888888887653 344467789999999999999999999998543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=225.43 Aligned_cols=285 Identities=17% Similarity=0.201 Sum_probs=248.4
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
....|+++...|... .+.||+.|.++.++|..+++.+.. ++||...|+.+.|+|+...++
T Consensus 218 ~~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~ 277 (506)
T KOG0289|consen 218 STPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVI 277 (506)
T ss_pred CCCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhhee
Confidence 456789999999855 689999999999999998887653 999999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeec--ccCCeeE
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYS 499 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~--h~~~v~~ 499 (1058)
+++.|..|+||......... ....|.++|+.+...|.|. ||++++.|++..+.| .+|..+..... ..-.+++
T Consensus 278 ~aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts 352 (506)
T KOG0289|consen 278 TASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTS 352 (506)
T ss_pred ecCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEE
Confidence 99999999999998766544 4668999999999999999 899999999999999 88988766554 2345889
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeee
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1058)
.+||| ||.++.+|..||.|++||+..+.....+.+|.++|..++|+.+|-++++++ .|+.|++||++..+..++
T Consensus 353 ~~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a----dd~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 353 AAFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA----DDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred eeEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe----cCCeEEEEEehhhcccce
Confidence 99988 778999999999999999999998889999999999999999999999998 478899999999999899
Q ss_pred eecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
+.......+..+.|.+.|.+|+.++.|=+|++++-.+.........+.+.+..+++.|....+++++++.|..++++.+
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 8887776799999999999999999888888887666555444444455557899999999999999999999888754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=228.94 Aligned_cols=296 Identities=16% Similarity=0.208 Sum_probs=235.9
Q ss_pred eecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeeccc----ccCcccccccccCCCcceEEEEEC
Q 001535 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMA----ACSLPFQASIFKDVPISVSRVAWS 415 (1058)
Q Consensus 340 ~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~l~~s 415 (1058)
.-.|.-+|+||+++||++ +..+++.+|+|.=|++.+|+.... +|+.. .-..+.+... ++|...|.+++.|
T Consensus 138 ~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS 211 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVS 211 (479)
T ss_pred eccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEc
Confidence 335899999999999999 589999999999999999885421 11110 0112222222 4899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeeccc
Q 001535 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1058)
Q Consensus 416 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~ 494 (1058)
+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+ ..-..+.++.+|.
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 999999999999999999999998776 5889999999999987666 689999999999999 7777889999999
Q ss_pred CCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC
Q 001535 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1058)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1058)
+.|.++.... -+..+-+|+.|+++++|++ .......+.++.+.+-|++|-.+ ..+++|+ .+|.|.+|++.+.
T Consensus 287 d~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGS----dnG~IaLWs~~KK 358 (479)
T KOG0299|consen 287 DGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGS----DNGSIALWSLLKK 358 (479)
T ss_pred cceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeecc----CCceEEEeeeccc
Confidence 9999997644 3356666679999999999 55667788888889999999755 4677777 3999999999999
Q ss_pred ceeeeeecccC-----------cceeEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeeEeccCCCCCCCceEEeeC
Q 001535 575 TIKRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSK 639 (1058)
Q Consensus 575 ~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~v~~s~ 639 (1058)
+++.+....++ .-|++++..|..+.+++|+.+|.|++|-..++ +++..+... +.|+.++|++
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f~~ 435 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAFSN 435 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEEcc
Confidence 88877653221 14778899999999999999999999999887 445555543 3689999999
Q ss_pred CCCEEEEE-ECCCcEEEEE
Q 001535 640 EGNLLAVT-TADNGFKILA 657 (1058)
Q Consensus 640 ~~~~l~~~-~~dg~i~iw~ 657 (1058)
+|+.+++| +....+--|-
T Consensus 436 sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 436 SGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CCCEEEEecccccccceee
Confidence 99966655 3444444443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=214.18 Aligned_cols=307 Identities=16% Similarity=0.212 Sum_probs=225.9
Q ss_pred CCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeec
Q 001535 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1058)
Q Consensus 626 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~ 705 (1058)
.+|...|++++|+.||+.|++++.|++|++|++..-.... |..
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-----Hr~-------------------------------- 125 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-----HRC-------------------------------- 125 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-----hhH--------------------------------
Confidence 3566689999999999999999999999999987631110 000
Q ss_pred cCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeec-
Q 001535 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS- 784 (1058)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~- 784 (1058)
...++ .-+..+.++|+||.+.+++...
T Consensus 126 -----------------------------------------------~R~nv-----e~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 126 -----------------------------------------------IRQNV-----EYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred -----------------------------------------------hhccc-----cCCCceEEEECCCcceEEEEEcc
Confidence 00000 1124467888998876665555
Q ss_pred cCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCce
Q 001535 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK 863 (1058)
Q Consensus 785 dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~ 863 (1058)
..++++|.+..... |.... ...-||... +. ..|.-.+..+-...+++++++++ |.+|.+|+++ |+
T Consensus 154 g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~-------f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTD---GSGSH--HFVHIDNLE-------FE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CCEEEEEEeeeccc---CCCCc--ccccccccc-------cc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 56888987654321 22111 111122110 11 12566677788888999999999 7889999998 88
Q ss_pred EEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEcc---Cc-----eeeeEecccCCCeeEEEEcCCCCEEEEEeC
Q 001535 864 VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR---VD-----EVKSKLKGHQKRITGLAFSTSLNILVSSGA 935 (1058)
Q Consensus 864 ~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~---~~-----~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~ 935 (1058)
.+..+......-...+.|| +|++||+++-.-.|++|.+- .| ..+..++||+..|..++||++...++++|.
T Consensus 220 ~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred eeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 8888887777778899999 99999999999999999974 22 345678999999999999999999999999
Q ss_pred CCcEEEEECCCCcee----ceEEEe-cCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCE
Q 001535 936 DAQLCVWSIDTWEKR----KSVTIH-IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPI 1010 (1058)
Q Consensus 936 Dg~i~iwd~~~~~~~----~~~~~~-~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v 1010 (1058)
||+++|||++-.-.. ..+..- .+.....+....+.+||.|..||++....+.+|..++|+....+... |...|
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~--h~~~I 376 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI--HSTTI 376 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh--hcCce
Confidence 999999998642111 111111 11222225566999999999999999999999999998877766543 48999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001535 1011 SCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1058)
Q Consensus 1011 ~~l~~s~dg~~l~t~~~dg~i~iw~~~~~ 1039 (1058)
.+++|++||+++++++ |..++++.-..|
T Consensus 377 s~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 377 SSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred eeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999999999999988 888998875444
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=242.96 Aligned_cols=352 Identities=20% Similarity=0.275 Sum_probs=263.5
Q ss_pred EEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCC
Q 001535 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1058)
Q Consensus 349 ~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 428 (1058)
.+..++.+.++|.+|+.||.|++|++.......+. + ....+..|.++|+.++..-+|+.|+++|.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~------------~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST------------P-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCccc------------c-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 45555444447999999999999998764432111 1 0123778999999999999999999999999
Q ss_pred eEEEEEecCCCcceeeeeecccccCeEEEEe-ecCCCeeEEEEEeCCCcEEEEe-cCC--Cee--------EEee-cccC
Q 001535 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKL--------FNFE-GHEA 495 (1058)
Q Consensus 429 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~-s~d~~~~~l~s~~~d~~i~iwd-~~~--~~~--------~~~~-~h~~ 495 (1058)
+|++|+...+. ...+.++..|.+.|.|++. .++.. ++|+||-|+.|.+|| ..| +.+ ..+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998774 2233468899999999999 66666 899999999999999 666 222 2233 7889
Q ss_pred CeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc
Q 001535 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1058)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1058)
.|++++..+ +|..+++|+..+.+++||.++......+.+|...|..+..++||..++++++ |+.|++||+...+
T Consensus 173 siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 999999855 6689999999999999999999999999999999999999999999999985 9999999999999
Q ss_pred eeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEE
Q 001535 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1058)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 655 (1058)
++.++..|.. .+.++..+|+-..+++|+.||.|+.=|+.+......+-...+ +|..+..+...+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCceeeecccccee
Confidence 9999999998 699999999999999999999999999988543333332233 6778887765555678888999999
Q ss_pred EEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCC----CCCCCCCCCCccc
Q 001535 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV----DPTSRSMDKPRTV 731 (1058)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 731 (1058)
|...... .+++.|.................. .+...+.|+ ...+.-+...+++
T Consensus 324 W~~~~~~---------------------~l~~s~~~~~~~T~~~~~~~~~~~--tp~~vi~Gg~ai~k~~mL~dkRhVlT 380 (735)
T KOG0308|consen 324 WKLEPDI---------------------ALSVSGDLDFFSTDSNNHSCDLTN--TPDSVIPGGAAIKKHAMLNDKRHVLT 380 (735)
T ss_pred cCCcccc---------------------ccccCCCCCcccccCCCccccccC--CCceeccCchhhhhhhhhcCcceEee
Confidence 9765431 122222222111111000000000 011112222 2245567788999
Q ss_pred CCCCCCCCcceeeeeec
Q 001535 732 DDVTDKPKPWQLAEIVD 748 (1058)
Q Consensus 732 ~~~d~~i~vw~~~~~~~ 748 (1058)
-+..|.+.+||+-....
T Consensus 381 kDa~gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 381 KDAKGNVALWDILACVK 397 (735)
T ss_pred ecCCCCEEEEEeeeeee
Confidence 99999999999865433
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=241.18 Aligned_cols=259 Identities=17% Similarity=0.303 Sum_probs=224.5
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccC-C
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-V 405 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h 405 (1058)
+|+....+......++ ...|+++.|+++|+ +||+|..+|.|.|||..+.+.+.. +.+ |
T Consensus 201 lW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h 259 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSH 259 (484)
T ss_pred EEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCCc
Confidence 7777776644444444 89999999999999 699999999999999988776653 556 9
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC
Q 001535 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1058)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~ 484 (1058)
...|.+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..+.|++|+. ++++|+.|+.+.||| ...
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCc
Confidence 9999999998 77899999999999999998776554 4789999999999999999 899999999999999 788
Q ss_pred CeeEEeecccCCeeEEeecccCCceEEEEEe--eCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCC
Q 001535 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1058)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~ 562 (1058)
.++..+..|.+.|.+++|+|-.. .+||+|+ .|+.|++||..++...... ..+..|.++.|++..+.++++.. ..
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG--~s 409 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHG--YS 409 (484)
T ss_pred cccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecC--CC
Confidence 88999999999999999999865 4888875 6999999999876655444 35668999999999987776542 24
Q ss_pred CceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001535 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1058)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 617 (1058)
++.|.+|+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 67899999999999999999998 6999999999999999999999999998764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=208.45 Aligned_cols=292 Identities=17% Similarity=0.276 Sum_probs=240.9
Q ss_pred EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEE
Q 001535 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1058)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~ 567 (1058)
+.+....+.|.++.|+. +|..+++++.|.++++||...+....++..+...+..++|......++.++. ..|..|+
T Consensus 8 k~f~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~tIr 83 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDDTIR 83 (311)
T ss_pred cccccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCCceE
Confidence 44555677899999965 7789999999999999999999999999888888999999888777776664 3578999
Q ss_pred EEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEE
Q 001535 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1058)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 647 (1058)
..++.+.+.++-|.||.. .|..++.+|-+..+++++.|++|++||++..++...+...+. ..++|.|+|-++|++
T Consensus 84 yLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDPEGLIFALA 158 (311)
T ss_pred EEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECCCCcEEEEe
Confidence 999999999999999998 899999999999999999999999999998888887766543 678999999999999
Q ss_pred ECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCC
Q 001535 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (1058)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1058)
...+.|++||++.-. .
T Consensus 159 ~~~~~IkLyD~Rs~d-------k--------------------------------------------------------- 174 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFD-------K--------------------------------------------------------- 174 (311)
T ss_pred cCCCeEEEEEecccC-------C---------------------------------------------------------
Confidence 988899999985420 0
Q ss_pred CcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCccccc
Q 001535 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATAS 807 (1058)
Q Consensus 728 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~ 807 (1058)
+....+.+..
T Consensus 175 ----------------------gPF~tf~i~~------------------------------------------------ 184 (311)
T KOG1446|consen 175 ----------------------GPFTTFSITD------------------------------------------------ 184 (311)
T ss_pred ----------------------CCceeEccCC------------------------------------------------
Confidence 0000000000
Q ss_pred ccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCe---eEEEEecC
Q 001535 808 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS---TFLAFHPQ 883 (1058)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i---~~l~~s~~ 883 (1058)
+...+.+.+.|||||+++..+. .+.+++.|.-+|..+.++.++...- ...+|+|
T Consensus 185 ---------------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP- 242 (311)
T KOG1446|consen 185 ---------------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP- 242 (311)
T ss_pred ---------------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-
Confidence 0344567889999999888877 6779999999999888888765432 5778999
Q ss_pred CCcEEEEEECCCCEEEEEccCceeeeEecc-cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001535 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 884 ~~~~lasg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~ 946 (1058)
|++++++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|.-.+++|+ +..+.+|=...
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 999999999999999999999999999998 78999999999987666655 56688887654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-25 Score=243.92 Aligned_cols=255 Identities=11% Similarity=0.124 Sum_probs=192.8
Q ss_pred EeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCc-
Q 001535 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (1058)
Q Consensus 363 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~~~- 440 (1058)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v-------------------~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV-------------------IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceE-------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 445667777776543222 237899999999999996 89999999999999999986432
Q ss_pred c----eeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEe
Q 001535 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1058)
Q Consensus 441 ~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 515 (1058)
. .....+.+|...|.+++|+|++.. ++++++.|++|++|| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357799999999999999874 568999999999999 7888777775 567899999976 678999999
Q ss_pred eCCeEEEEecCCCCceEEeeCCCCcEEE-----EEEccCCCEEEEEeccCCCCceEEEEeCCC-CceeeeeecccCc-ce
Q 001535 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTT-----MLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKK-SN 588 (1058)
Q Consensus 516 ~dg~i~~wd~~~~~~~~~~~~~~~~i~~-----i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~i 588 (1058)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||+++ ++.+..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999998888888888765432 335689999999886544456899999995 5566555433321 22
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCC
Q 001535 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1058)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 641 (1058)
......+++.++++|+.|+.|++|++..+.. ..+....+..++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 2233345588889999999999999987753 334333345578899999964
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-25 Score=245.66 Aligned_cols=260 Identities=16% Similarity=0.225 Sum_probs=201.7
Q ss_pred ccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceee--eeccCCCCCCCeeEEEEec-
Q 001535 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA--NDVAGVNLEEAVPCIALSK- 841 (1058)
Q Consensus 765 ~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~- 841 (1058)
..|.....++|+..+++++.+.....|+...+. ..++....|.... ..+.+ |.+.|.+++|+|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~G--H~~~V~~v~fsP~ 86 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLG--QEGPIIDVAFNPF 86 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeC--CCCCEEEEEEcCC
Confidence 345556677787778888888888888643210 1123333343222 12344 999999999999
Q ss_pred CCCEEEEEe-CCcEEEEECCCc-------eEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecc
Q 001535 842 NDSYVMSAT-GGKISLFNMMTF-------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (1058)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~ 913 (1058)
++++||+++ |++|++||+.++ +++..+.+|...|.+++|+|.++.+|++|+.|++|+|||+.+++.+..+.+
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 889999998 999999999765 356788999999999999994457999999999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-----ECCeEEE
Q 001535 914 HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-----HETQLAI 988 (1058)
Q Consensus 914 h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-----~d~~v~v 988 (1058)
|...|.+++|+|+|.+|++++.|++|++||+.+++.+..+.. |.......+.|.+++..++++ .|+.|++
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~-----H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA-----HASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec-----CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 999999999999999999999999999999999886554432 222334578899988877763 3789999
Q ss_pred EECCCCeeeee-eccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEE
Q 001535 989 YDASKMERIRQ-WTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYI 1045 (1058)
Q Consensus 989 ~d~~~~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~t~~-~dg~i~iw~~~~~~~~~~~ 1045 (1058)
||+++...... ...+. ...+....|++|+.+|++++ .|+.|++||+.+++.....
T Consensus 242 WDlr~~~~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 242 WDTRKMASPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EeCCCCCCceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 99987653332 22221 45677778999999999887 5999999999999876654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=240.81 Aligned_cols=241 Identities=17% Similarity=0.243 Sum_probs=205.6
Q ss_pred EEEEC-CCCCEEEEEeCCCeEEEEEecCCCcc---eeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC-
Q 001535 411 RVAWS-PDGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG- 484 (1058)
Q Consensus 411 ~l~~s-pdg~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~- 484 (1058)
.+..+ |.++||.+|+.||.|++|++...... .....++.|...|++++...+++ .|+++|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 46788999999999999998644321 12336789999999999999998 799999999999999 555
Q ss_pred -CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE----------Eee-CCCCcEEEEEEccCCCE
Q 001535 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYD-APGHWCTTMLYSADGSR 552 (1058)
Q Consensus 485 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~-~~~~~i~~i~~s~~~~~ 552 (1058)
.++.++..|.+.|.++++. ..+...+++||.|+.|.+||++++.... .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788999999999999984 3366899999999999999999764311 112 45568999999999988
Q ss_pred EEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCC
Q 001535 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 632 (1058)
+++|+. ++.+++||.++++.+..+.+|.. .|.++..++||..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888875 88899999999999999999998 899999999999999999999999999999999999887755 69
Q ss_pred ceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 633 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+++..+|+=..+.+|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998887663
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-27 Score=226.71 Aligned_cols=283 Identities=14% Similarity=0.197 Sum_probs=231.4
Q ss_pred ecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCE
Q 001535 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1058)
Q Consensus 341 ~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1058)
-+|.++|.|++=+|..-..+|+|+.||.|+|||+.+..+... +..|.+.|..|++.. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cc
Confidence 469999999999999844699999999999999988776653 788999999999987 77
Q ss_pred EEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeE
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 499 (1058)
+++++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||. .|.||| ....++..+.-..+.|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 889999999999998773 232 3433 34577777766666 7899875 588999 888899999888889999
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC-ceee
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKR 578 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~ 578 (1058)
+.|+|... ..|++|+.|+.|.+||++....+..... ...-+.++|+|.+-.++++. +|..++.+|++.. ..+.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence 99998754 6889999999999999998877665442 23457899999665566554 6999999999875 5677
Q ss_pred eeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
.+.+|.. .+..+.|+|.|+.+++|+.|.+|+||....+.-...+-.. ....|.|+.||.|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 7888877 8999999999999999999999999999887654433221 2346899999999999999999999999987
Q ss_pred cCC
Q 001535 659 AIG 661 (1058)
Q Consensus 659 ~~~ 661 (1058)
...
T Consensus 345 ~As 347 (433)
T KOG0268|consen 345 KAS 347 (433)
T ss_pred chh
Confidence 543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-26 Score=226.78 Aligned_cols=282 Identities=20% Similarity=0.235 Sum_probs=235.6
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceee--------------eee-cccccCeEEEEeecCCCee
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------------SQI-DAHVGAVNDLAFAYPNKLL 466 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--------------~~l-~~h~~~v~~l~~s~d~~~~ 466 (1058)
...|.-+|.|++++||+++.++++.+|+|.=|++.+|+..+.+ ..- .+|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5669999999999999999999999999999999988743110 001 27888999999999999
Q ss_pred EEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEE
Q 001535 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~ 545 (1058)
+|++|+.|..|.||| .+.+.++.+.+|.+.|.+++|-. ....+++++.|+.|++|+++......++-+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999 99999999999999999999965 346799999999999999998888888999999999999
Q ss_pred EccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEecc
Q 001535 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 625 (1058)
....++.+-+++. |.++++|++. .+..-.+.++.+ .+.|++|-. ..++++|+.+|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 9888888777764 9999999994 334445666655 788888864 46899999999999999999998877643
Q ss_pred CCC----------CCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeecccccccc
Q 001535 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1058)
Q Consensus 626 ~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 695 (1058)
..+ ...|++++..|...++|+|+.+|.|++|.+..+...+..+...+ ..+.|++++|+++|+.++++
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 221 11578999999999999999999999999999866555554433 44679999999999988766
Q ss_pred CC
Q 001535 696 GT 697 (1058)
Q Consensus 696 ~~ 697 (1058)
.+
T Consensus 444 iG 445 (479)
T KOG0299|consen 444 IG 445 (479)
T ss_pred cc
Confidence 44
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=233.55 Aligned_cols=281 Identities=16% Similarity=0.298 Sum_probs=236.0
Q ss_pred eEEee-cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEE-EEE
Q 001535 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAW 414 (1058)
Q Consensus 337 ~~~~~-~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~ 414 (1058)
+.+.+ +|+..|..+++.+... +++||.||++++|+-..++.+.. ..+.+|.+.|.+ +++
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence 34444 4999999999888874 78899999999999765554432 336778888888 888
Q ss_pred CC-CCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeecc
Q 001535 415 SP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1058)
Q Consensus 415 sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h 493 (1058)
-+ ++-.|++|+.|++|.+|...+...+. +|.+|...|.+++...++. ++|||.|.++++|- .+++...+.+|
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH 139 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGH 139 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCc
Confidence 86 55679999999999999999887665 7899999999999888775 89999999999998 45566679999
Q ss_pred cCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC
Q 001535 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1058)
+..|++++..+. + .+++|+.|++|++|. .++...++.+|...|+.+++-+++.++ +++ +|+.|++|++ +
T Consensus 140 ~asVWAv~~l~e--~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~fl-Scs----NDg~Ir~w~~-~ 208 (745)
T KOG0301|consen 140 TASVWAVASLPE--N-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFL-SCS----NDGSIRLWDL-D 208 (745)
T ss_pred chheeeeeecCC--C-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeE-eec----CCceEEEEec-c
Confidence 999999998663 2 899999999999995 467778899999999999998887554 554 4999999999 8
Q ss_pred CceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcE
Q 001535 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1058)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 653 (1058)
|+.+.++.+|.. .+.++....++..++++++|++++||+.. ++.+.+..++- .|+++.+-++|. +++|+.||.|
T Consensus 209 ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 209 GEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred Cceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceE
Confidence 999999999998 88889977888999999999999999976 77888877654 688888888876 6788889999
Q ss_pred EEEEccC
Q 001535 654 KILANAI 660 (1058)
Q Consensus 654 ~iw~~~~ 660 (1058)
|||....
T Consensus 283 rVfT~~k 289 (745)
T KOG0301|consen 283 RVFTVDK 289 (745)
T ss_pred EEEEecc
Confidence 9998764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=227.19 Aligned_cols=246 Identities=20% Similarity=0.277 Sum_probs=209.7
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|..++|+++.|.+++. .+++.+.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 67799999999999999999999999999999998776 333447888999999999999999 788899999999999
Q ss_pred -cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
.+++...++.||.+.|+++.|.... ..+++|+.|.+|+.||+....+..++. ....+..|+.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 8899999999999999999986543 349999999999999998865554432 34445556554 445556653
Q ss_pred CCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCC--CCCCceEEee
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFS 638 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~v~~s 638 (1058)
|..|++||+++.........+. .|+++..++++..+++++.|.++.+.|+.+.+....+...+. ....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 7889999999999999988765 699999999999999999999999999999998888765442 2247899999
Q ss_pred CCCCEEEEEECCCcEEEEEccCC
Q 001535 639 KEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
|++.|+++|+.||.|+||++.++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc
Confidence 99999999999999999999887
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=207.87 Aligned_cols=250 Identities=14% Similarity=0.266 Sum_probs=206.2
Q ss_pred ceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEEC
Q 001535 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1058)
Q Consensus 336 ~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1058)
.....+.-.+.+..|+||++....+++++.||+++|||...... +...++.|...|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 34455667889999999999887899999999999999543221 123488899999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeEEeec
Q 001535 416 P-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEG 492 (1058)
Q Consensus 416 p-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~ 492 (1058)
+ +++.+++++-|++|++|+...++.+. ++.+|...|...+|+|.... +++++|.|+++++|| ..|+.+. +..
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~a 188 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IEA 188 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EEe
Confidence 9 56777888999999999998887666 68999999999999998766 899999999999999 5566665 889
Q ss_pred ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCc-eEEeeCCCCcEEEEEEccCCC-EEEEEeccCCCCceEEEEe
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWN 570 (1058)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~i~~s~~~~-~l~~~~~~~~~~~~i~~wd 570 (1058)
|...|.++.|+.. +...+++|+.|+.|+.||++..+. ..++.+|+-.|..++|||... .|++++. |-++++||
T Consensus 189 h~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~ 263 (311)
T KOG0277|consen 189 HNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWD 263 (311)
T ss_pred ccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecc
Confidence 9999999999765 557999999999999999987654 457788888999999999654 5667764 89999999
Q ss_pred CCCCc-eeeeeecccCcceeEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 001535 571 ESEGT-IKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (1058)
Q Consensus 571 ~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~vwd~ 614 (1058)
...+. .+.+...|.. .+..+.|++ ++.++++++-|+.++||+.
T Consensus 264 ~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 88554 4455554444 777788887 5678999999999999984
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-22 Score=214.76 Aligned_cols=277 Identities=15% Similarity=0.196 Sum_probs=224.8
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
.|+.+-+.++|.|+|. ++.+++.||.|++|+........ ..+..+...|.+++. ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP------------------ETIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC------------------chhhccCceeEEEee--cccce
Confidence 5888999999999999 67888899999999986652111 112237778888876 45599
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEE
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 500 (1058)
++|+.+++|.+|.+.+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-+ .++.....+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999886543 2445677899999999999 899999999999999 8888899999999999999
Q ss_pred eecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC--------CCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCC
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--------~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1058)
.|+| ++.+||+.+.||.|++||++++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9976 6689999999999999999987766544332 346788999999766666653 8999999999
Q ss_pred CCceeeeeecccCc-ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCC
Q 001535 573 EGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1058)
Q Consensus 573 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 651 (1058)
++.....+...... .+..+.|+|+|.||++++.||.|.|||.++.+. +.....|.|++|.|+.+.+-.....|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99988888764433 388899999999999999999999999988322 33345799999999988776666655
Q ss_pred cEEEE
Q 001535 652 GFKIL 656 (1058)
Q Consensus 652 ~i~iw 656 (1058)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55544
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=216.23 Aligned_cols=240 Identities=16% Similarity=0.308 Sum_probs=200.6
Q ss_pred CcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecC
Q 001535 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1058)
|...|..+.++|+...+++++.|-.|+||....... . .....|..+|+.+...|.
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-------------------~------~~~~~h~~~V~~ls~h~t 314 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-------------------P------TSSRPHEEPVTGLSLHPT 314 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeeccccccC-------------------c------cccccccccceeeeeccC
Confidence 777899999999999999999999999997543210 0 001128999999999999
Q ss_pred CCEEEEEe-CCcEEEEECCCceEEEEecC--CCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCee
Q 001535 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1058)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 919 (1058)
|.|+++++ |++..+.|+.++.++..... ..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|.++|.
T Consensus 315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence 99999999 89999999999998877654 234589999999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECC--CCee
Q 001535 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDAS--KMER 996 (1058)
Q Consensus 920 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~--~~~~ 996 (1058)
.++|+.+|-|||+++.|+.|++||++..+-.+++.+... -++.++.|.+.|.+|+++ ++=+|++++-. +..+
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~ 468 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTE 468 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc-----ccceeEEEcCCCCeEEeecceeEEEEEeccccccee
Confidence 999999999999999999999999998776555554421 358999999999999996 44445555522 5556
Q ss_pred eeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001535 997 IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 997 ~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
+..+..+ .+..+++.|....+++++++.|..++++.+
T Consensus 469 ~~~~~~~---sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 469 IKELADH---SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eehhhhc---ccccceeeecccceEEeeccchhheEEeec
Confidence 6665544 788999999999999999999999888765
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=245.61 Aligned_cols=257 Identities=19% Similarity=0.342 Sum_probs=220.3
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCC
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1058)
+|+............+|.+.|++++|..-+. +|++|+.|.++++||..+|++... +.+|.
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~~-------------------l~gh~ 291 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTHS-------------------LQGHT 291 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEEE-------------------ecCCC
Confidence 5555554444444667999999999998444 799999999999999999998764 88999
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCC
Q 001535 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1058)
Q Consensus 407 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~ 485 (1058)
+.|.|+.. .+.++++|+.|.+|++|++.++..+. .+.+|.++|.++... +. ++++|+.|++|++|| .+++
T Consensus 292 stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 292 SSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred ceEEEEEc--cCceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhhce
Confidence 99999987 45588889999999999999998777 566799999999998 55 899999999999999 9999
Q ss_pred eeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCC-CceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCc
Q 001535 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1058)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~ 564 (1058)
++..+.+|...|+++.+.. . ..+++|+.|++|++||+++. ++...+..|..-+..+. ..+++|++++. |+
T Consensus 363 cl~sl~gH~~~V~sl~~~~--~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a----D~ 433 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDS--E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA----DG 433 (537)
T ss_pred eeeeecCCcceEEEEEecC--c-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc----cc
Confidence 9999999999999998733 2 68999999999999999999 88888988888775544 46778998885 88
Q ss_pred eEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEe
Q 001535 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1058)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 623 (1058)
.|++||..++++++++.+.+...+..+++. ...+++++.||.+++||++++.....+
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999999532367777665 578999999999999999999887766
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=220.70 Aligned_cols=241 Identities=17% Similarity=0.263 Sum_probs=198.8
Q ss_pred ccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEE
Q 001535 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 480 (1058)
+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++.+ ++.+|.+.|..|++.. . .+++++.|.+|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 68999999999999987 889999999999999999988776 6889999999999987 3 58999999999999
Q ss_pred ecCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 481 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
-..+.+++++.+. ..+..+.-+. .+..++++|. .|.+||.....+...+......|.++.|+|-...++.++.
T Consensus 135 k~~~~p~~tilg~-s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGK-SVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeecc-cccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 9778777777653 3455665433 3357778775 4889999888888888888889999999997765554443
Q ss_pred CCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEeccCCCCCCCceEEeeC
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK 639 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~v~~s~ 639 (1058)
.|+.|.+||++++.+++...... ..+.++|+|.+-.+++|++|..++.||+...+ ++.... +|.+.|.++.|||
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCC
Confidence 48999999999998887765433 34568999988888899999999999998754 344443 5566899999999
Q ss_pred CCCEEEEEECCCcEEEEEccCC
Q 001535 640 EGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999998765
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=223.39 Aligned_cols=284 Identities=14% Similarity=0.190 Sum_probs=231.6
Q ss_pred CCCcEEEEEEccCCCE-EEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001535 537 PGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1058)
Q Consensus 537 ~~~~i~~i~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~ 615 (1058)
....|.+++|+|...+ +++.+ ...+.+|+..+....+++..... .+.+++|..||+.+++|++.|.|+|||..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-----S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-----SVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-----ccEEEEEecchhhhhhhHHhhcc-ceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 4457999999996543 44433 56799999998888887777776 79999999999999999999999999977
Q ss_pred CCceeeEeccCCCCCCCceEEeeC-CCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccc
Q 001535 616 NVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1058)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 694 (1058)
+...+..+..| ..++..+.|+| ++..+++|++|+.+++||+.+... .
T Consensus 99 ~r~iLR~~~ah--~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~----------------------------- 146 (487)
T KOG0310|consen 99 SRVILRQLYAH--QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-Q----------------------------- 146 (487)
T ss_pred cHHHHHHHhhc--cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-E-----------------------------
Confidence 76677777655 44899999999 566788899999999999877521 0
Q ss_pred cCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEec
Q 001535 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1058)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1058)
..+ .+|++.|++.+++|
T Consensus 147 ------------------------------------------------------------~~l---~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 147 ------------------------------------------------------------AEL---SGHTDYVRCGDISP 163 (487)
T ss_pred ------------------------------------------------------------EEe---cCCcceeEeecccc
Confidence 111 22889999999998
Q ss_pred Ccc-eEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCc
Q 001535 775 SAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853 (1058)
Q Consensus 775 ~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~ 853 (1058)
-.. .+++|+.||.|++||..... .. ....+|..+|..+.+-|.|..+|+++...
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~--------------------~~-----v~elnhg~pVe~vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLT--------------------SR-----VVELNHGCPVESVLALPSGSLIASAGGNS 218 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCC--------------------ce-----eEEecCCCceeeEEEcCCCCEEEEcCCCe
Confidence 655 67788889999999865321 01 11123899999999999999999999999
Q ss_pred EEEEECCCc-eEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEE
Q 001535 854 ISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS 932 (1058)
Q Consensus 854 i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s 932 (1058)
++|||+.+| +.+..+..|...|+|+.+.. ++..|.+|+-|+.|++||+.+.+.+..+. -.++|.+++.+||++.++.
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEE
Confidence 999999855 55566666999999999999 88999999999999999999999998887 6689999999999999999
Q ss_pred EeCCCcEEEEECCCCc
Q 001535 933 SGADAQLCVWSIDTWE 948 (1058)
Q Consensus 933 ~s~Dg~i~iwd~~~~~ 948 (1058)
|..||.+.+-+....+
T Consensus 297 GmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 297 GMSNGLVSIRRREVKK 312 (487)
T ss_pred ecccceeeeehhhccc
Confidence 9999988887655443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=206.96 Aligned_cols=277 Identities=16% Similarity=0.178 Sum_probs=214.0
Q ss_pred CCCcceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-
Q 001535 404 DVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1058)
Q Consensus 404 ~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd- 481 (1058)
...+.|.+|+||| ...+++.+|-||+|++|+++....+.. +....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEc
Confidence 3578999999999 555666899999999999987422222 24567999999999999998 899999999999999
Q ss_pred cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCC
Q 001535 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1058)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~ 561 (1058)
.++ .+..+..|.++|..+.|.+..+...|++|+.|++|++||.+......++..++. +.++.. -..+++++.
T Consensus 102 ~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv--~~pm~vVat---- 173 (347)
T KOG0647|consen 102 ASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADV--LYPMAVVAT---- 173 (347)
T ss_pred cCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhc--cCceeEEEe----
Confidence 666 677888899999999998877667899999999999999998888777776653 444433 233555555
Q ss_pred CCceEEEEeCCCCce-eeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCC-------CCC
Q 001535 562 GDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGG-------LPN 631 (1058)
Q Consensus 562 ~~~~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~-------~~~ 631 (1058)
.+..|.+|+++++.. .+.....-...+++++..++....+.|+-.|.+.|..+..+. .-..+..|.. .-.
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 388899999977643 333444444568899998888888999999999999998863 3333433332 224
Q ss_pred CceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCC
Q 001535 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1058)
Q Consensus 632 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 697 (1058)
|+.++|+|.-..|++++.||++.+||.... ..++.. +.+..+|.+..|+.+|++++++.+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s-----~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTS-----ETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhh-hhhhcc-----CcCCCccceeEecCCCCEEEEEee
Confidence 788999999899999999999999997654 222222 234457999999999999987654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=206.63 Aligned_cols=304 Identities=13% Similarity=0.185 Sum_probs=218.9
Q ss_pred EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE----EeeCCCCcEEEEEEccCCCEEEEEeccCCCC
Q 001535 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1058)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~ 563 (1058)
..+++|.+.|++++|+. ||+.|++++.|++|++|+++...... ....+-...+.+.|+||.+-+++... ..
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~---~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK---RG 154 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc---cC
Confidence 46789999999999954 88999999999999999998644321 22223336788999999987776654 36
Q ss_pred ceEEEEeCCCC---ceeee--------eecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCC
Q 001535 564 SFLVEWNESEG---TIKRT--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1058)
Q Consensus 564 ~~i~~wd~~~~---~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 632 (1058)
..+++|.+... ..... +...++-.+-.+-....+.+|++++.|..|.+|++. |+.+..+..... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cc
Confidence 67888875432 11111 111111123334455667899999999999999998 888888765432 44
Q ss_pred ceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCC
Q 001535 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1058)
Q Consensus 633 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1058)
...+.||+|+++++++-.-.|++|.. .|..||.+-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~-------------------------~f~kdG~fq-------------------- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEP-------------------------IFTKDGTFQ-------------------- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEE-------------------------EeccCcchh--------------------
Confidence 67899999999999999999999985 233333221
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEee
Q 001535 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1058)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~ 792 (1058)
...+++.+ . +|...|..++|+++..++++++.||++++||
T Consensus 267 -----------------------ev~rvf~L--------------k---GH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 267 -----------------------EVKRVFSL--------------K---GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred -----------------------hhhhhhee--------------c---cchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 12233333 2 3999999999999999999999999999999
Q ss_pred eeccccC-CCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEec-C
Q 001535 793 WHRNEQN-PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S 870 (1058)
Q Consensus 793 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~-~ 870 (1058)
.+..... .+.+. ...|. ..+.. ....-..++++|+|+.||.+....+++|..++++..-.++ .
T Consensus 307 tdVrY~~~qDpk~----------Lk~g~---~pl~a--ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 307 TDVRYEAGQDPKI----------LKEGS---APLHA--AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred ccceEecCCCchH----------hhcCC---cchhh--cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 7643211 01110 11111 01111 2334448999999999999999999999999998777765 4
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCCEEEEE
Q 001535 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1058)
Q Consensus 871 ~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd 901 (1058)
|...|++++|++ +|+++|+++ |..++++.
T Consensus 372 h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 889999999999 999999887 78888876
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=205.97 Aligned_cols=276 Identities=17% Similarity=0.228 Sum_probs=218.0
Q ss_pred EEEEeccceEEEEEccCCCccccccceeecccccCccc-ccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 001535 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF-QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1058)
Q Consensus 360 la~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~ 438 (1058)
+++|+....|.=+++.-...-.. +.+.+.+ +.-.+..|.++|+++|. +|.++|+|+.|-+|+|||+.+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~--------~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~ 73 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCT--------DSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR 73 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccc--------cccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch
Confidence 56777777776666643321000 0000111 12236789999999998 5899999999999999999988
Q ss_pred CcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeC
Q 001535 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (1058)
Q Consensus 439 ~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 517 (1058)
..+. .+-.|.+.|+++.|.++-..-.|++|++||.|.+|+ ..-.++..+++|.+.|+.++++|++ ++.++.+.|
T Consensus 74 ~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D 148 (362)
T KOG0294|consen 74 KQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGD 148 (362)
T ss_pred hhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--ceEEEEcCC
Confidence 7666 577899999999999886422589999999999999 7778899999999999999999854 899999999
Q ss_pred CeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCC
Q 001535 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (1058)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 597 (1058)
+.++.||+-.++.-........ .+.+.|+|.|.+++.++ ...|-+|.+.+......+.... .+.++.|. ++
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-----~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~ 219 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-----RNKIDIYQLDNASVFREIENPK--RILCATFL-DG 219 (362)
T ss_pred ceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe-----ccEEEEEecccHhHhhhhhccc--cceeeeec-CC
Confidence 9999999988877666554433 34499999999888886 6679999998877766665542 34445554 56
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEe--eCCCCEEEEEECCCcEEEEEccCC
Q 001535 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--SKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 598 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~--s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
..|++|++|+.|.+||..++.+...+..|. .+|..+.+ .|++.+|++++.||.|++||+...
T Consensus 220 ~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 220 SELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEecCCceEEEeccCCCccceeeecch--hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 799999999999999999988888887654 47888874 467899999999999999998765
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=222.41 Aligned_cols=305 Identities=16% Similarity=0.227 Sum_probs=235.4
Q ss_pred ceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc----eeeeeecccCcceeEEEEcCCCCEEEEEeC
Q 001535 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1058)
Q Consensus 530 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1058)
....+..+...|.++++.|.|..+++|+. |..|++||..... .-+.+.......|+++.|++.|..|++.+.
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 34456667778999999999999999996 8899999987432 233344444457999999999999999999
Q ss_pred CCcEEEEECCCCceeeEec----------cCCCCCCCceEEeeCC-CCEEEEEECCCcEEEEEccCCccccccccCCCcc
Q 001535 606 DSQIKFWDMDNVNILTSTD----------AEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFE 674 (1058)
Q Consensus 606 dg~i~vwd~~~~~~~~~~~----------~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 674 (1058)
....+++|....+...... ..+|...++|.+|+|+ ...+++++.||++|||++.......+.+......
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 9999999987665554432 3567778999999995 4578999999999999999886666666666666
Q ss_pred cccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEE
Q 001535 675 ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRL 754 (1058)
Q Consensus 675 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~ 754 (1058)
..+.+++.++|++||+.+ ++|..||.|++|+............
T Consensus 315 g~Rv~~tsC~~nrdg~~i-------------------------------------Aagc~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLI-------------------------------------AAGCLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred CcccCceeeecCCCcchh-------------------------------------hhcccCCceeeeecCCcccccceEe
Confidence 677788888888877765 6677789999999754322222111
Q ss_pred EEecCCCCCcc--cEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCC
Q 001535 755 VTMPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 832 (1058)
Q Consensus 755 ~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1058)
- ..|.. .|++++||+||++|++-+.|+++++||+....... . ...+.....
T Consensus 358 k-----~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL-------------~---------~~tgL~t~~ 410 (641)
T KOG0772|consen 358 K-----DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL-------------N---------VRTGLPTPF 410 (641)
T ss_pred e-----eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch-------------h---------hhcCCCccC
Confidence 1 22555 89999999999999999999999999987532200 0 011112345
Q ss_pred CeeEEEEecCCCEEEEEe-------CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEcc
Q 001535 833 AVPCIALSKNDSYVMSAT-------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1058)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~ 903 (1058)
+-+.++||||.++|++|. .|++.+||..+.+.+..+.-....|..+.|+| .-+.|.+|+.||++++|-=.
T Consensus 411 ~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 411 PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred CCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEEECc
Confidence 567899999999999995 25699999999999999988888899999999 66677789999999987533
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=210.85 Aligned_cols=290 Identities=12% Similarity=0.179 Sum_probs=239.0
Q ss_pred ecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCE
Q 001535 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1058)
Q Consensus 341 ~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1058)
.+|++.|+.|+...... ++.+++.|.+.+||.+++|+++.+ +.||.+.|+|++|++.+.+
T Consensus 145 ~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh~s~~L 204 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFHNSGLL 204 (481)
T ss_pred cccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEeccccce
Confidence 35999999999887766 899999999999999999999865 8899999999999999999
Q ss_pred EEEEeCCCeEEEEEe------cC--------CC----------------------cc-eeeeeecccccCeEEEEeecCC
Q 001535 421 VGVAFTKHLIQLYSY------AG--------SN----------------------DL-RQHSQIDAHVGAVNDLAFAYPN 463 (1058)
Q Consensus 421 las~~~dg~i~iwd~------~~--------~~----------------------~~-~~~~~l~~h~~~v~~l~~s~d~ 463 (1058)
+++++.|++..||.. .. ++ .+ ..+..|.+|.+.|.+..|...|
T Consensus 205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg 284 (481)
T KOG0300|consen 205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG 284 (481)
T ss_pred EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence 999999999999962 11 00 01 1233578999999999999999
Q ss_pred CeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCC-ceEEeeCCCCcE
Q 001535 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWC 541 (1058)
Q Consensus 464 ~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i 541 (1058)
+ .+++++.|.+..+|| .+|..+..+.||....+.++-+|. .+++++.+.|.+.++||++..- ....+.+|...|
T Consensus 285 ~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 285 Q--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV 360 (481)
T ss_pred c--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeecccccce
Confidence 9 799999999999999 999999999999999999998774 4899999999999999998543 345789999999
Q ss_pred EEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc-eeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001535 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1058)
Q Consensus 542 ~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 620 (1058)
+++.|..+. .+++++ .|..|++||+++.+ .+.++.... +++.++.+..+..++.--++..|++||+...++.
T Consensus 361 TS~vF~~dd-~vVSgS----DDrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 361 TSVVFNTDD-RVVSGS----DDRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred eEEEEecCC-ceeecC----CCceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 999998765 566666 48999999998764 556665443 5778888887788888888999999999765443
Q ss_pred eEe--ccCCCCCCCceEEeeCCC--CEEEEEECCCcEEEEEccCC
Q 001535 621 TST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 621 ~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~ 661 (1058)
... ...+|...|.|++|..+. .-|++++.|..+.-|++...
T Consensus 434 RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 434 RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 222 344666679999998653 35788899999999988654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-24 Score=204.14 Aligned_cols=268 Identities=17% Similarity=0.260 Sum_probs=214.4
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
-.+.|+.|.|+|.+.. |++++-||++++||+....... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4678999999999886 4555799999999998764432 334899999999986 56788
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEe
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 501 (1058)
+|+.||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++|| ........+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 778999999999998777 799999999999999 5444444443 334788887
Q ss_pred ecccCCceEEEEEeeCCeEEEEecCCCCceEEeeC--CCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC----c
Q 001535 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----T 575 (1058)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~ 575 (1058)
. .++.|++|+.|..|.+||+++......... -.-.+.++++-|++.-.++++. +|.|.+=.++.. +
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 5 456899999999999999998766553222 2337899999998777777664 788877666554 4
Q ss_pred eeeeeecccC--------cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEE
Q 001535 576 IKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1058)
Q Consensus 576 ~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 647 (1058)
....|+.|.. .+|++++|+|-...|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 4455666643 25888999999999999999999999999999988887654 3369999999999999999
Q ss_pred EC
Q 001535 648 TA 649 (1058)
Q Consensus 648 ~~ 649 (1058)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=226.64 Aligned_cols=514 Identities=15% Similarity=0.166 Sum_probs=323.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCe-eEEEEEeCCCcEEEEe-cCCCee
Q 001535 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-LSGRKL 487 (1058)
Q Consensus 410 ~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~-~~l~s~~~d~~i~iwd-~~~~~~ 487 (1058)
..-.||+|+++++.... ..|.||...+|+++. .+.+|..+++.+.+.|.... .++++++.||.|++|| ..+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34579999999987764 579999999999887 68899999999999987663 4788999999999999 888888
Q ss_pred EEeecccCCeeEEeecc--cCCceEEEEEeeCCeE------------EEEecCCCCceE-EeeCCCCcEEEEEEccCCCE
Q 001535 488 FNFEGHEAPVYSICPHH--KENIQFIFSTAIDGKI------------KAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSR 552 (1058)
Q Consensus 488 ~~~~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~i------------~~wd~~~~~~~~-~~~~~~~~i~~i~~s~~~~~ 552 (1058)
.++..+- ++..+.+.+ ......+..+..|..+ +-+.+.+..... .+......-.++.+++.|.+
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 8876443 333333211 0011111122222111 111111100000 00001111457788888888
Q ss_pred EEEEeccCCCCceEEEEeCCCCcee---eeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeeEeccCC
Q 001535 553 LFSCGTSKDGDSFLVEWNESEGTIK---RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEG 627 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~ 627 (1058)
.+... +..+.+|...++... +....++...+++.+++|++++++++..||+|.+|.--. +........|.
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 77765 667889998875511 112223333578899999999999999999999996433 33333333456
Q ss_pred CCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccC
Q 001535 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1058)
Q Consensus 628 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~ 707 (1058)
|...|.+++|+++|.+|.+|+..+.+.+|.+.++.+.+- +...++|..+.++||+.+.+....
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL-------PRLgs~I~~i~vS~ds~~~sl~~~---------- 312 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL-------PRLGSPILHIVVSPDSDLYSLVLE---------- 312 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccc-------cccCCeeEEEEEcCCCCeEEEEec----------
Confidence 667899999999999999999999999999998853221 224467899999999887643322
Q ss_pred CCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecC---CCCCcccEEEEEEecCcceEEEeec
Q 001535 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE---STDTSSKVVRLLYTNSAVGLLALGS 784 (1058)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~s~~~~~l~~~~~ 784 (1058)
|+.|.+-..........+..+..+. .....+-.+.+.++|.-+.++-.+.
T Consensus 313 ---------------------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 313 ---------------------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred ---------------------------CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 3333333332221111111111110 0113345677888997777888889
Q ss_pred cCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe---------CCc--
Q 001535 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---------GGK-- 853 (1058)
Q Consensus 785 dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---------dg~-- 853 (1058)
.|.|.+||+-+.... ....+...+...|.. .+...+++++.+..|.++++.. ||.
T Consensus 366 ~g~vQ~ydl~td~~i------~~~~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTI------YKLQVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred CceEEEEecccccee------eeEEEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 999999997654321 111111122222221 1345578888899999999883 233
Q ss_pred EEEEECCCc----eEEEEe-cCCCCCeeEEEEecCCCc-EEEEEECCCCEEEEEccCc----------eeeeEecccCCC
Q 001535 854 ISLFNMMTF----KVMTTF-MSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVD----------EVKSKLKGHQKR 917 (1058)
Q Consensus 854 i~vwd~~~~----~~~~~~-~~~~~~i~~l~~s~~~~~-~lasg~~dg~v~iwd~~~~----------~~~~~~~~h~~~ 917 (1058)
+++|-.... .+...+ ..|...+.+.++.+.-.. ..++++.||.++||-+... .+...-.-|..+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 788965433 333333 357666666555542333 7899999999999998432 232222238899
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeceEEEecCCCCCCCCceEEEEcC---CCCEEEEEECCeEEEEECCC
Q 001535 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTW-EKRKSVTIHIPAGKTPTGDTRVQFNA---DQVRMLVVHETQLAIYDASK 993 (1058)
Q Consensus 918 V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~~~~d~~v~v~d~~~ 993 (1058)
+++++|+.||..|+ ++.|++|.+||..+. +........ ..++..+.|.. ....+..+..+.+.+|++.+
T Consensus 512 i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~ 584 (792)
T KOG1963|consen 512 ITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSR------NWPIAELLFTAQTQNDGALVHATQQRLSVWNLLS 584 (792)
T ss_pred ccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcccccc------ccchHhHhhhcccccccceeeccCceEehHhhhh
Confidence 99999999996666 667889999999983 322222111 13333333332 22233345678899999887
Q ss_pred Ceeee
Q 001535 994 MERIR 998 (1058)
Q Consensus 994 ~~~~~ 998 (1058)
+...-
T Consensus 585 ~~l~w 589 (792)
T KOG1963|consen 585 MSLIW 589 (792)
T ss_pred hheec
Confidence 76654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=240.64 Aligned_cols=248 Identities=17% Similarity=0.234 Sum_probs=202.2
Q ss_pred ccCCCcceEEEEECCCCCEEEEEe--CCCeEEEEEecCC--------C-cceeeeeecccccCeEEEEeecCCCeeEEEE
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAF--TKHLIQLYSYAGS--------N-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT 470 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~--~dg~i~iwd~~~~--------~-~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s 470 (1058)
+..++..|.++..+|||..+|+|+ .||.++||+.+.- . ..+.+.+...|.+.|+|+.|+|||+ +||+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEee
Confidence 334567899999999999999999 8999999986421 1 1223345678999999999999999 8999
Q ss_pred EeCCCcEEEEe-cC-------C-----------CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCce
Q 001535 471 CGDDKLIKVWE-LS-------G-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1058)
Q Consensus 471 ~~~d~~i~iwd-~~-------~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 531 (1058)
|++|+.|.||. .. | +++..+.+|...|..++|+| ++.++++++.|++|.+|+..+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEccccceee
Confidence 99999999999 42 1 25678899999999999977 7799999999999999999999888
Q ss_pred EEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccC-----cceeEEEEcCCCCEEEEEe--
Q 001535 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVG-- 604 (1058)
Q Consensus 532 ~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-- 604 (1058)
..+.+|...|..+.|.|-|+++++-+ .|+.|++|++.+..+.+.+.++.. .....+.|+|||.+|++..
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqs----dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQS----DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeeecccccccceEECCccCeeeeec----CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 89999999999999999999999988 499999999888777777766543 2356689999999999864
Q ss_pred --CCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCC-----CC------------EEEEEECCCcEEEEEcc
Q 001535 605 --EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-----GN------------LLAVTTADNGFKILANA 659 (1058)
Q Consensus 605 --~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-----~~------------~l~~~~~dg~i~iw~~~ 659 (1058)
.-..+.|.+..+.+.-..+- +|..++.++.|+|. .. .+|+|+.|++|.||...
T Consensus 241 n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred cCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 34578888887666555555 45558999999873 11 56677777777777653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=207.49 Aligned_cols=332 Identities=14% Similarity=0.231 Sum_probs=245.4
Q ss_pred ceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEE
Q 001535 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1058)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 654 (1058)
++++.+.||.+ .|..++.......+.+++.|.+.+||.+++|.++..+.+| .+.|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH--~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH--TGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccc--ccceeeEEeccccceEEEccCCcchH
Confidence 34567778887 6777777766678888999999999999999999998855 55899999999999999999999999
Q ss_pred EEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCC
Q 001535 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1058)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1058)
||...-..+....... ..+ +. .
T Consensus 216 IW~~av~~~vP~~~a~---~~h---------Ss-------------------------------------E--------- 237 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAP---SDH---------SS-------------------------------------E--------- 237 (481)
T ss_pred HHHHhhcCcCCCCCCC---CCC---------Cc-------------------------------------h---------
Confidence 9975432111110000 000 00 0
Q ss_pred CCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeec
Q 001535 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1058)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~ 814 (1058)
....--|- |. +-..-....||. +|++=
T Consensus 238 -eE~e~sDe-------------------~~-~d~d~~~~sD~~---------tiRvP----------------------- 264 (481)
T KOG0300|consen 238 -EEEEHSDE-------------------HN-RDTDSSEKSDGH---------TIRVP----------------------- 264 (481)
T ss_pred -hhhhcccc-------------------cc-cccccccccCCc---------eeeee-----------------------
Confidence 00000000 00 000000001111 11110
Q ss_pred cCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEEC
Q 001535 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1058)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~ 893 (1058)
-..+.+ |...|.+..|-..|+.+++++ |.+..+||+++++++..+.+|..+.+.++-+| ..+++++.+.
T Consensus 265 -------l~~ltg--H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSr 334 (481)
T KOG0300|consen 265 -------LMRLTG--HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSR 334 (481)
T ss_pred -------eeeeec--cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEecc
Confidence 012334 888999999999999999999 99999999999999999999999999999999 9999999999
Q ss_pred CCCEEEEEccCc-eeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeceEEEecCCCCCCCCceEEEE
Q 001535 894 DSTIHIYNVRVD-EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE-KRKSVTIHIPAGKTPTGDTRVQF 971 (1058)
Q Consensus 894 dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~l~~ 971 (1058)
|.+.++||++.. ..+..|+||.+.|+++.|.-| ..+++|+.|.+|+|||+.+-. .+.++... +++..++.
T Consensus 335 DtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd-------S~~NRvav 406 (481)
T KOG0300|consen 335 DTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD-------SPANRVAV 406 (481)
T ss_pred CceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC-------CccceeEe
Confidence 999999999854 557889999999999999976 578899999999999998733 23333333 78899999
Q ss_pred cCCCCEEEEE-ECCeEEEEECCCCeeeeeec--cCCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCC
Q 001535 972 NADQVRMLVV-HETQLAIYDASKMERIRQWT--PQDALSAPISCAVYSCNSQ--LVFATFCDGNIGVFDADTL 1039 (1058)
Q Consensus 972 s~d~~~l~~~-~d~~v~v~d~~~~~~~~~~~--~~~~~~~~v~~l~~s~dg~--~l~t~~~dg~i~iw~~~~~ 1039 (1058)
+..+..++.- .++.|++||++.... ..+. ...+|..-|+|.+|+.+-. -|++++-|..+.=|++...
T Consensus 407 s~g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 407 SKGHPIIAIPHDNRQVRLFDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCceEEeccCCceEEEEecCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999986 566799999975443 3333 3356788999999986533 5788899999999998653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=232.67 Aligned_cols=250 Identities=14% Similarity=0.201 Sum_probs=191.5
Q ss_pred EeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecC-CCeeEEEEEeCCCcEEEEe-cCCC--------eeEEeecc
Q 001535 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (1058)
Q Consensus 424 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd-~~~~--------~~~~~~~h 493 (1058)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +. +|++|+.|++|++|| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 56788999999876543 3368899999999999997 56 899999999999999 5432 34567899
Q ss_pred cCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC
Q 001535 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1058)
...|.+++|+|.. ..++++++.|++|++||++++.....+. +...|.+++|+|+|.++++++ .++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s----~D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC----VGKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe----cCCEEEEEECCC
Confidence 9999999998853 2456799999999999999887766665 456899999999999999887 388999999999
Q ss_pred CceeeeeecccCcc----eeEEEEcCCCCEEEEEeCCC----cEEEEECCC-CceeeEeccCCCCCCCceEEeeCCCCEE
Q 001535 574 GTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1058)
Q Consensus 574 ~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 644 (1058)
++.+.++.+|.+.. +....|++++.+|++++.|+ .|++||+++ ++++.....+.+...+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987632 22234568889999988664 799999985 5666666555443333333334568899
Q ss_pred EEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeecc
Q 001535 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1058)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 689 (1058)
++|+.|++|++|++..+. +..+.. .....+..+++|.|.-
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~~---~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVNE---YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeecc---cccCCCccceEEcccc
Confidence 999999999999997652 222221 1134567778888754
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=184.07 Aligned_cols=244 Identities=13% Similarity=0.139 Sum_probs=197.8
Q ss_pred CcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecC
Q 001535 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1058)
|.+.|.+.+|+|+|..+++++.|.+|++..++....+..|. -+. +. -|.+.|..++|-.+
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~----------------dle--~n--mhdgtirdl~fld~ 147 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGH----------------DLE--FN--MHDGTIRDLAFLDD 147 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCc----------------cee--ee--ecCCceeeeEEecC
Confidence 88999999999999999999999999998765443322222 111 11 28899999999653
Q ss_pred ----CCEEEEEe--CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecc--c
Q 001535 843 ----DSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG--H 914 (1058)
Q Consensus 843 ----g~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~--h 914 (1058)
|.+|++++ |..|++-|..+|+....+.+|.+.|.++- +- ++-++++|+.|.+|++||++-..++.++.. |
T Consensus 148 ~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 148 PESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred CCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence 56788876 66799999999999999999999998763 33 778999999999999999998888777642 2
Q ss_pred -----CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEE
Q 001535 915 -----QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAI 988 (1058)
Q Consensus 915 -----~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v 988 (1058)
+..|.+++..|.|++|++|-.|....+||+..+..++.+..+. ..|.++.|||...|++++ -|.+|++
T Consensus 226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs------adir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS------ADIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc------cceeEEEeCCCceEEEEecccceEEE
Confidence 3579999999999999999999999999999998777665443 889999999999999996 5999999
Q ss_pred EECCCCe----eeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001535 989 YDASKME----RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 989 ~d~~~~~----~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
-|+...- .+.... .|...+..+.|.|..-.+++.+.|.++.+|-++
T Consensus 300 tdlqgdla~el~~~vv~---ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVA---EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eecccchhhcCceEEEE---eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9987421 122222 236788889999998889999999999999874
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=200.27 Aligned_cols=252 Identities=20% Similarity=0.299 Sum_probs=208.6
Q ss_pred cccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeec--CCCeeEEEEEeCCCcEE
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIK 478 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~ 478 (1058)
+...|.+.|..+...--|+.|||++.|++|+|+.+..+.....+.+|.||.++|+.++|.. .|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4667999999998888899999999999999999998877677778999999999999987 677 899999999999
Q ss_pred EEe-cCCC--eeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCc---eEEeeCCCCcEEEEEEccC---
Q 001535 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1058)
Q Consensus 479 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~i~~i~~s~~--- 549 (1058)
||. ..|+ ....+..|...|++++|.|.+-|-.|++++.||.|.+.+.+.... ......|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 5553 345677899999999999999999999999999999999877622 2345567778999999986
Q ss_pred C-----------CEEEEEeccCCCCceEEEEeCCCC--ceeeeeecccCcceeEEEEcCCC----CEEEEEeCCCcEEEE
Q 001535 550 G-----------SRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKFW 612 (1058)
Q Consensus 550 ~-----------~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~vw 612 (1058)
| +.|++++. |+.|++|+..++ ...+++.+|.+ -++.++|.|.- .++++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 56888884 999999998876 44566888887 88999999864 579999999999999
Q ss_pred ECCCC-ceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEcc
Q 001535 613 DMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 613 d~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
..... +.-.....+.....+..+.||..|+.|++++.|+.|.+|.-.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 76532 221211222334468999999999999999999999999754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=216.57 Aligned_cols=292 Identities=15% Similarity=0.222 Sum_probs=234.0
Q ss_pred ceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEEC
Q 001535 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1058)
Q Consensus 336 ~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1058)
....++.|..-|+++.+|...++ +.||+ .|-|+|||+...... .++. +.. ......-|.++..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k--~Pvs-----------qLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNK--SPVS-----------QLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCC--Cccc-----------ccc-ccCcccceeeeEec
Confidence 34667889999999999999985 78875 688999999654221 1110 111 11235689999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeeccc
Q 001535 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1058)
Q Consensus 416 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~ 494 (1058)
|||+.|++|+.-.++.|||+..... +....+..-....++++.+||.+ +.+++..||.|.||| .+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987543 22224444556788999999999 888999999999999 8888899999999
Q ss_pred CCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC
Q 001535 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1058)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1058)
+.+.||.++. ||..|.+|+.|++||.||++++....... ....|.++..+|.+.++++|-. ++.+.+.... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999954 78899999999999999999877765543 3457999999999999999973 6677666643 3
Q ss_pred ceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEE
Q 001535 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1058)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 654 (1058)
.....+..|.. .|.++.|.+.|+++++.+.|..+..|...-|..+..... ...|.++.++.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 33344444554 788999999999999999999999999998887766543 34799999999999999999998888
Q ss_pred EEEc
Q 001535 655 ILAN 658 (1058)
Q Consensus 655 iw~~ 658 (1058)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=198.18 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=222.2
Q ss_pred CCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEE
Q 001535 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1058)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1058)
..|..+..++.|.. -.|+.||+.|. +||+|..||.|.|||+.|...- .++.+|..+|.|
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeE
Confidence 45667777888776 89999999999 6999999999999999885532 348999999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEee
Q 001535 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1058)
Q Consensus 412 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 491 (1058)
++||+||+.|++++.|..|.+||+..|..++.+ ....+|+.+.|.|...+..+++- .+..-.+-+.+. ..+++-
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~-~~h~~L 144 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSD-PKHSVL 144 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEE-ecCCcEEEEecC-Cceeec
Confidence 999999999999999999999999999977643 35678999999998776344443 344344444111 112211
Q ss_pred cc--cCC--e--eEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCC-CcEEEEEEccCCCEEEEEeccCCCCc
Q 001535 492 GH--EAP--V--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDS 564 (1058)
Q Consensus 492 ~h--~~~--v--~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~i~~s~~~~~l~~~~~~~~~~~ 564 (1058)
.. .+. + .+..| +..|+++++|...|.+.++|..+.+....+.... ..|..+.++..|+.++..+. |.
T Consensus 145 p~d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DR 218 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DR 218 (405)
T ss_pred cCCCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cc
Confidence 11 111 1 11123 4567999999999999999999998887776665 78999999999999999884 99
Q ss_pred eEEEEeCCCC-------c--eeeeeecc-cCcceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeEeccCCCCCCCc
Q 001535 565 FLVEWNESEG-------T--IKRTYAGF-RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1058)
Q Consensus 565 ~i~~wd~~~~-------~--~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 633 (1058)
.|+.|++..- + ..+++..- ....-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ ....
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~ 297 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELL 297 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hhee
Confidence 9999997621 1 11222211 112345689999999998887 456799999999999999876543 2567
Q ss_pred eEEeeCCCCEEEEEECCCcEEEEEccC
Q 001535 634 RLRFSKEGNLLAVTTADNGFKILANAI 660 (1058)
Q Consensus 634 ~v~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1058)
.+.|+|-...+++- ..|.+++|....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeec
Confidence 89999998888777 778999998754
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-23 Score=195.28 Aligned_cols=265 Identities=17% Similarity=0.259 Sum_probs=213.5
Q ss_pred EEEEeeCCeEEEEecCCCC------------ceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceee
Q 001535 511 IFSTAIDGKIKAWLYDTMG------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1058)
Q Consensus 511 l~s~~~dg~i~~wd~~~~~------------~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1058)
|++|+....|.-+++.... ..+.+..|...++++++ ++.++++|+. |.+|++||+.....+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGss----DetI~IYDm~k~~qlg 77 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSS----DETIHIYDMRKRKQLG 77 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCC----CCcEEEEeccchhhhc
Confidence 5566666666555554322 23456678889999987 5789999984 8899999999999999
Q ss_pred eeecccCcceeEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEE
Q 001535 579 TYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1058)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 656 (1058)
.+..|.+ .++++.|.+.-. +|++|++||.|.+|+....+++..+..|.+ .|+.++.+|.+++-.+.+.|+.+++|
T Consensus 78 ~ll~Hag-sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 78 ILLSHAG-SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--QVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred ceecccc-ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc--ccceeEecCCCceEEEEcCCceeeee
Confidence 9998876 899999998765 999999999999999999999999987765 69999999999999999999999999
Q ss_pred EccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCC
Q 001535 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1058)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 736 (1058)
|+-.+.....
T Consensus 155 NLV~Gr~a~v---------------------------------------------------------------------- 164 (362)
T KOG0294|consen 155 NLVRGRVAFV---------------------------------------------------------------------- 164 (362)
T ss_pred hhhcCcccee----------------------------------------------------------------------
Confidence 9866510000
Q ss_pred CCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccC
Q 001535 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1058)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~ 816 (1058)
-+
T Consensus 165 ----~~-------------------------------------------------------------------------- 166 (362)
T KOG0294|consen 165 ----LN-------------------------------------------------------------------------- 166 (362)
T ss_pred ----ec--------------------------------------------------------------------------
Confidence 00
Q ss_pred CCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCC
Q 001535 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (1058)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~ 896 (1058)
-....+.+.|+|.|.+++.+..+.|-+|.+.+.+....+... .++.|+.|- ++..|++|.+|+.
T Consensus 167 -------------L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l--~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 167 -------------LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFL--DGSELLVGGDNEW 230 (362)
T ss_pred -------------cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeec--CCceEEEecCCce
Confidence 011122377888888888888888889988877766655433 567777775 6778999999999
Q ss_pred EEEEEccCceeeeEecccCCCeeEEEE--cCCCCEEEEEeCCCcEEEEECCCCc
Q 001535 897 IHIYNVRVDEVKSKLKGHQKRITGLAF--STSLNILVSSGADAQLCVWSIDTWE 948 (1058)
Q Consensus 897 v~iwd~~~~~~~~~~~~h~~~V~~l~~--s~d~~~l~s~s~Dg~i~iwd~~~~~ 948 (1058)
|.+||..+..+...+.+|..+|.++.+ .|++.+|+|+|.||.|+|||++...
T Consensus 231 i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 999999999999999999999999985 4678899999999999999998753
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=207.42 Aligned_cols=249 Identities=14% Similarity=0.204 Sum_probs=197.7
Q ss_pred cccEEEEEEecCcc-eEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecC
Q 001535 764 SSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1058)
Q Consensus 764 ~~~i~~l~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1058)
..+|.+..|.|+|. .+++++....+..||+.+......+.. .+ .....+....+|++
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~---------------------~g-~e~~~~e~FeVShd 314 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP---------------------YG-VEEKSMERFEVSHD 314 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCC---------------------CC-cccchhheeEecCC
Confidence 35788899999999 888888888999998865443221111 11 02345777899999
Q ss_pred CCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCC-CeeE
Q 001535 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK-RITG 920 (1058)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~-~V~~ 920 (1058)
+++||..+ .|.|.+....+++.+.+++ -.+.|..++|+. +++.|.+.+.+|.|++||+....++.++....+ .-++
T Consensus 315 ~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts 392 (514)
T KOG2055|consen 315 SNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTS 392 (514)
T ss_pred CCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceee
Confidence 99999988 8999999999999998887 567899999998 888888888999999999999999988864321 2467
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCce-eceEEEecCCCCCCCCceEEEEcCCCCEEEEE---ECCeEEEEECCCCee
Q 001535 921 LAFSTSLNILVSSGADAQLCVWSIDTWEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV---HETQLAIYDASKMER 996 (1058)
Q Consensus 921 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~---~d~~v~v~d~~~~~~ 996 (1058)
+|.|++|.+||+|+..|.|.|||.++.-. ....++.....-. ..|++++|++|++.||.+ .+..+++-.+.+...
T Consensus 393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt-t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT-TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh-eeeeeeeeCcchhhhhhhhhccccceEEEeccceee
Confidence 88899999999999999999999765211 0111111111112 789999999999999986 467899999999999
Q ss_pred eeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001535 997 IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 997 ~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
...|......-+.|+|++|||.|.+++.|..+|.|.+|.+.
T Consensus 472 FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 472 FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 88888775556789999999999999999999999999874
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-21 Score=209.79 Aligned_cols=472 Identities=17% Similarity=0.229 Sum_probs=308.8
Q ss_pred ccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCc-eEEEEEeeCCeEEEEecC
Q 001535 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYD 526 (1058)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~ 526 (1058)
+-...-..-.|++|++. ++. ..+..|.||. .+|.++..+.+|..++.++.+.+.... .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k~--l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKF--LFL-CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCcE--EEE-eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33333344569999984 333 3367999999 999999999999999999999887654 678899999999999998
Q ss_pred CCCceEEeeCCCCcEEEEEEcc---CCCEEEEEeccCCCCce-EEEEeCCCCce-----eeeeecccC------cceeEE
Q 001535 527 TMGSRVDYDAPGHWCTTMLYSA---DGSRLFSCGTSKDGDSF-LVEWNESEGTI-----KRTYAGFRK------KSNGVV 591 (1058)
Q Consensus 527 ~~~~~~~~~~~~~~i~~i~~s~---~~~~l~~~~~~~~~~~~-i~~wd~~~~~~-----~~~~~~~~~------~~i~~~ 591 (1058)
.+....++..... +..+.+.| +-...+..+. ++.. +.......... +.++..+.. ..-.++
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~---~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSV---EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCccceeEeec---ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 8877776665443 33333322 1111221111 0111 11111111111 111111110 012456
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCcccccccc
Q 001535 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTS--TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1058)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1058)
.+++.|.+....- +..+.+|+..++..... -....|.-.++|.++||+++++|+|..||.|.+|.--.. .
T Consensus 167 ~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~ 238 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------S 238 (792)
T ss_pred EEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------c
Confidence 7777776655554 45788998877551111 011123334789999999999999999999999974321 0
Q ss_pred CCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecC
Q 001535 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS 749 (1058)
Q Consensus 670 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~ 749 (1058)
+.+-+..+|.
T Consensus 239 ---------------------------------------------------------------~~~~t~t~lH------- 248 (792)
T KOG1963|consen 239 ---------------------------------------------------------------DDSETCTLLH------- 248 (792)
T ss_pred ---------------------------------------------------------------cccccceEEE-------
Confidence 0001111111
Q ss_pred CceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCC
Q 001535 750 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (1058)
Q Consensus 750 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1058)
. |...|.+++|+++|.+|++||..|.+.+|.+.++.. ..++.
T Consensus 249 -------W-----H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k------------------------qfLPR-- 290 (792)
T KOG1963|consen 249 -------W-----HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK------------------------QFLPR-- 290 (792)
T ss_pred -------e-----cccccceeEEecCCceEeecccceEEEEEeecCCCc------------------------ccccc--
Confidence 1 778999999999999999999999999997654321 12333
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCC-----------CCCeeEEEEecCCCcEEEEEECCCCE
Q 001535 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-----------PPASTFLAFHPQDNNIIAIGTEDSTI 897 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~~~~~lasg~~dg~v 897 (1058)
....|..+.+|||+.+.+... |+.|.+....+.+...++.+- .+-.+.++++| ..+.++..+..|.|
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v 369 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV 369 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence 678899999999999887776 999999988766555444432 23367788999 77888889999999
Q ss_pred EEEEccCceeeeEec-----------ccCCCeeEEEEcCCCCEEEEEe--------CCC--cEEEEECCCCceeceEEEe
Q 001535 898 HIYNVRVDEVKSKLK-----------GHQKRITGLAFSTSLNILVSSG--------ADA--QLCVWSIDTWEKRKSVTIH 956 (1058)
Q Consensus 898 ~iwd~~~~~~~~~~~-----------~h~~~V~~l~~s~d~~~l~s~s--------~Dg--~i~iwd~~~~~~~~~~~~~ 956 (1058)
.+||+.+.+.+..+. .+.-.+++++.+-.|.+++|.- .|| .+++|-......-..+...
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 999998876555442 1233578888888899999864 233 4789988776655555555
Q ss_pred cCCCCCCCCceEEEEcCCCC-EEEE-EECCeEEEEECCCCeeeee----e---ccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001535 957 IPAGKTPTGDTRVQFNADQV-RMLV-VHETQLAIYDASKMERIRQ----W---TPQDALSAPISCAVYSCNSQLVFATFC 1027 (1058)
Q Consensus 957 ~~~~~~~~~v~~l~~s~d~~-~l~~-~~d~~v~v~d~~~~~~~~~----~---~~~~~~~~~v~~l~~s~dg~~l~t~~~ 1027 (1058)
+...|....+..+.+++... ..++ +.|+.+++|-....+.+.. | ..+..|..++++++||.||..|+++ .
T Consensus 450 I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~ 528 (792)
T KOG1963|consen 450 INNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-F 528 (792)
T ss_pred EecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-c
Confidence 55555533334444444433 4555 5899999999843322110 1 1112358899999999999866655 5
Q ss_pred CCcEEEEeCCC-CeEEEEE
Q 001535 1028 DGNIGVFDADT-LRLRCYI 1045 (1058)
Q Consensus 1028 dg~i~iw~~~~-~~~~~~~ 1045 (1058)
|++|.+||..+ .++++..
T Consensus 529 ~~~Itiwd~~~~~~l~~~~ 547 (792)
T KOG1963|consen 529 DDTITIWDYDTKNELLCTE 547 (792)
T ss_pred CCEEEEecCCChhhhhccc
Confidence 99999999998 4444443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=210.32 Aligned_cols=264 Identities=13% Similarity=0.225 Sum_probs=211.9
Q ss_pred eEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC
Q 001535 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1058)
Q Consensus 337 ~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1058)
....+.|.+.|+.+.+-|....++|+++..+.|.|||..+....... .....+...+.||...=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccccc
Confidence 34456699999999999999989999999999999999764432210 001112335889999888899999
Q ss_pred C-CCEEEEEeCCCeEEEEEecCCCc----ceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-c--CCCeeE
Q 001535 417 D-GNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLF 488 (1058)
Q Consensus 417 d-g~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~--~~~~~~ 488 (1058)
. .-+|++|+.|++|++||+..... +.....+.+|+..|.+++|++-... +|++++.|+.+.||| + +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 4 55889999999999999975433 4555568899999999999998776 799999999999999 6 556667
Q ss_pred EeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCc-eEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEE
Q 001535 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1058)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~ 567 (1058)
...+|.++|+|++|+|.. +..||+|+.|++|.+||+++... ...+..|...|..+.|+|....+++.+. .|+.+.
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~ 342 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLN 342 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEE
Confidence 888999999999999874 68999999999999999998655 5578889999999999998765544332 499999
Q ss_pred EEeCCCC--------------ceeeeeecccCcceeEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 001535 568 EWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMD 615 (1058)
Q Consensus 568 ~wd~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~vwd~~ 615 (1058)
+||+..- +++....||.. .|..+.|+|+..++ ++.++|+.+.||.+.
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9998642 23345557776 78889999988765 457899999999985
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-20 Score=204.07 Aligned_cols=269 Identities=13% Similarity=0.180 Sum_probs=224.6
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCC-CcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
.+|+..-+.|+|.|+|.+|.+++.||.|++|+.... +... ++.-+...|.+++.. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 468899999999999999999999999999998765 3333 333477778887765 44 699999999999999
Q ss_pred -cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
.++..-..+...+-++..++++ ++|.+++.|+.|-.|++-++........+.+|..+|.++.|+|.+++||+..
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss--- 157 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS--- 157 (933)
T ss_pred CCCCCccceeeeeeccceEEEEe--cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe---
Confidence 6666554555556788999984 4778999999999999999999999999999999999999999999999988
Q ss_pred CCCceEEEEeCCCCceeeeeeccc-------CcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCc
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFR-------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 633 (1058)
.+|.|++||+.++.+..++.+-. ...+..++|+|++..+++.+.|+.|.+|+..+.+....+....+...+.
T Consensus 158 -~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 158 -CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred -cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 49999999999998877766432 2346668999999999999999999999999999999988777666689
Q ss_pred eEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccc
Q 001535 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1058)
Q Consensus 634 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 694 (1058)
+++|+|+|.+||+++.+|.|.|||.++-.. |. ....|.+++|.|++..+-.
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~~---~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHER-------HE---FKRAVCCEAWKPNANAITL 287 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccchh-------cc---ccceeEEEecCCCCCeeEE
Confidence 999999999999999999999999986211 11 1235788888888877643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=215.88 Aligned_cols=269 Identities=12% Similarity=0.168 Sum_probs=219.9
Q ss_pred CcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCccccc
Q 001535 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATAS 807 (1058)
Q Consensus 728 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~ 807 (1058)
.+.+|+. |.|+|||+...........+.... ..+.|++....|||+.|++|+.-.++.|||+........
T Consensus 433 hVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~---rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik------ 502 (705)
T KOG0639|consen 433 HVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN---RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK------ 502 (705)
T ss_pred eeEecCC-CeEEEeeccCCCCCCccccccccC---cccceeeeEecCCCceEEeccccceeeeeeccCCCcchh------
Confidence 3455554 899999998765444444444443 678899999999999999999999999999864322111
Q ss_pred ccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCc
Q 001535 808 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886 (1058)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 886 (1058)
..+.. ......++++|||.++..++. ||.|.|||+.+...++.|.+|...+.|+.+++ ||.
T Consensus 503 ---------------aelts--sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGt 564 (705)
T KOG0639|consen 503 ---------------AELTS--SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGT 564 (705)
T ss_pred ---------------hhcCC--cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCc
Confidence 11111 334577899999999876665 99999999999999999999999999999999 999
Q ss_pred EEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCc
Q 001535 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966 (1058)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 966 (1058)
.|-+|+-|.+|+-||++++..+.... ....|.+|...|.+.+|+.|-.++.+.|-.....+.- .+..+ .+-|
T Consensus 565 klWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky-qlhlh------eScV 636 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY-QLHLH------ESCV 636 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce-eeccc------ccEE
Confidence 99999999999999999998665543 4578999999999999999999999998887764421 11111 2788
Q ss_pred eEEEEcCCCCEEEE-EECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001535 967 TRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 967 ~~l~~s~d~~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
.++.|++.|+++++ |.|+-+..|...-|..+..... .++|.+..+|.|+++++||+.|+...||.+
T Consensus 637 LSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE----~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 637 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE----SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEecccCceeeecCchhhhhhccCccccceeeccc----cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999998 6899999999999988877665 789999999999999999999998888875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=211.35 Aligned_cols=274 Identities=12% Similarity=0.153 Sum_probs=204.3
Q ss_pred cEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEe
Q 001535 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1058)
.|..++|-|||..+++. .+..+.|||.+.|..+.. ++||.+.|.|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lA--Ag~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA--AGSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEe--cCCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 79999999999975544 356899999999988754 999999999999999999999999
Q ss_pred CCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeecccCCeeEEeeccc
Q 001535 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1058)
Q Consensus 426 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~ 505 (1058)
.|..|.+|+-.-...++ ..|.+.|.||.|+|-.. .++|++- ...-+|....+.+...+ ...++.+++| .
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999876543332 26999999999999988 6888874 35668984444333222 2344566666 6
Q ss_pred CCceEEEEEeeCCeEEEEecCCCCceEEeeC---CCCcEEEEEEccCCC-----EEEEEeccCCCCceEEEEeCCCCcee
Q 001535 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1058)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---~~~~i~~i~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1058)
.||++++.|-.+|+|.+-+- +++....+.. ...+|.+++|+|... .+++.-. ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 68999999999999998864 3444444444 455999999999642 3444332 4455555543 3333
Q ss_pred eeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEE
Q 001535 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1058)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 657 (1058)
..-+.-. ....|+.+.++|.+++.||.|+.+.+|.. .|-.+.++....+ .|+.++..|+++.++.|..||+|..|+
T Consensus 216 gk~r~L~-FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALN-FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCC-CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 3222111 13457888999999999999999999975 5666666654333 799999999999999999999999998
Q ss_pred ccCC
Q 001535 658 NAIG 661 (1058)
Q Consensus 658 ~~~~ 661 (1058)
+...
T Consensus 292 l~fS 295 (1081)
T KOG1538|consen 292 LIFS 295 (1081)
T ss_pred hHHh
Confidence 7543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=192.84 Aligned_cols=252 Identities=17% Similarity=0.238 Sum_probs=201.9
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC--CCC
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1058)
.|++-|-.+...--|++ |||+++|++|+|+.++.+.... ....|.||.++|..++|.. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 48888888888888995 8999999999999998765421 1234899999999999976 799
Q ss_pred EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCe--eEEeecccC
Q 001535 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK--LFNFEGHEA 495 (1058)
Q Consensus 420 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~--~~~~~~h~~ 495 (1058)
+||+++.||.|.||.-++|. ..+.+....|...|++++|.|.+-.+.|++++.||.|.|.+ .+|.- ......|.-
T Consensus 72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 99999999999999998883 44555677899999999999998877999999999999998 33222 244567999
Q ss_pred CeeEEeecccCC-c-----------eEEEEEeeCCeEEEEecCCCCce--EEeeCCCCcEEEEEEccCC----CEEEEEe
Q 001535 496 PVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSADG----SRLFSCG 557 (1058)
Q Consensus 496 ~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~i~~i~~s~~~----~~l~~~~ 557 (1058)
.|++++|.|..- | +.|++|+.|..|++|+.+...-. ..+..|...|+.++|.|.- .+|++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999999987622 2 56999999999999998875322 2477888999999999964 4788887
Q ss_pred ccCCCCceEEEEeCCCC--ceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001535 558 TSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1058)
Q Consensus 558 ~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~ 615 (1058)
+|+.+.||-.+.. .-..++...-...+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 231 ----qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 231 ----QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ----CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 5999999976522 11222222222378899999999999999999999999754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=205.33 Aligned_cols=225 Identities=14% Similarity=0.161 Sum_probs=192.3
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-c--
Q 001535 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (1058)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~-- 482 (1058)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+++.|+.||. +|+|||.||.|.+|+ .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4689999999999999999999999999999999877 5789999999999999999 899999999999997 2
Q ss_pred -------CCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEE
Q 001535 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1058)
Q Consensus 483 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 555 (1058)
+-++++.|..|.-+|+++...+.+-..++++++.|.++++||+..+.....+. ....+.+++++|-++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEe
Confidence 23567899999999999998776566799999999999999998887666655 4457999999999999999
Q ss_pred EeccCCCCceEEEEeCCC----------------CceeeeeecccC-cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001535 556 CGTSKDGDSFLVEWNESE----------------GTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1058)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 618 (1058)
|+. +|.|.+.++.. +..+..+.+|.+ ..|+|++++.||..|++|+.||.++|||..+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 884 88888876643 234556677776 579999999999999999999999999999999
Q ss_pred eeeEeccCCCCCCCceEEeeCCCC
Q 001535 619 ILTSTDAEGGLPNLPRLRFSKEGN 642 (1058)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~s~~~~ 642 (1058)
++.++... .++|+.+.+.|-.+
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPLER 332 (476)
T ss_pred HHHHHhhh--ccccceeEeecccc
Confidence 99888732 34789998877433
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=203.31 Aligned_cols=297 Identities=16% Similarity=0.233 Sum_probs=223.2
Q ss_pred CceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceee-EeccCCCCCCCceEEeeCC
Q 001535 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILT-STDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~ 640 (1058)
...+.+||+++|....++++.....-..+..- .+.+++++. ....|.+|.+....... .+..+ +.|.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P---g~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLP---GPVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccc---cceeeeecCCC
Confidence 55689999999999999887622111112111 235666665 55689999987665544 22222 36899999999
Q ss_pred CCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCC
Q 001535 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1058)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1058)
|.+|+.|+-.|.+++|.+.+| ..+..+.
T Consensus 93 G~~l~ag~i~g~lYlWelssG-~LL~v~~--------------------------------------------------- 120 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-ILLNVLS--------------------------------------------------- 120 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-cHHHHHH---------------------------------------------------
Confidence 999999999999999999887 2222111
Q ss_pred CCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCC
Q 001535 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1058)
Q Consensus 721 ~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~ 800 (1058)
+|-..|+++.|+.||..+++++.||.|.+|.+..--. +
T Consensus 121 -----------------------------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~-a 158 (476)
T KOG0646|consen 121 -----------------------------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS-A 158 (476)
T ss_pred -----------------------------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc-c
Confidence 1777899999999999999999999999998753210 0
Q ss_pred CCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecC--CCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeE
Q 001535 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF 877 (1058)
Q Consensus 801 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 877 (1058)
+.. .+-+.+ ..+.. |.-.|+.+.+.+- ..++++++ |.++++||+..+.++.++. -...+.+
T Consensus 159 ~~~------------~~~~p~-~~f~~--HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~a 222 (476)
T KOG0646|consen 159 DND------------HSVKPL-HIFSD--HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKA 222 (476)
T ss_pred ccC------------CCccce-eeecc--CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCccee
Confidence 000 011111 12333 8889999988765 35778888 9999999999999988876 4667999
Q ss_pred EEEecCCCcEEEEEECCCCEEEEEccCc----------------eeeeEecccCC--CeeEEEEcCCCCEEEEEeCCCcE
Q 001535 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVD----------------EVKSKLKGHQK--RITGLAFSTSLNILVSSGADAQL 939 (1058)
Q Consensus 878 l~~s~~~~~~lasg~~dg~v~iwd~~~~----------------~~~~~~~~h~~--~V~~l~~s~d~~~l~s~s~Dg~i 939 (1058)
++.+| ..+.+.+|+.+|.|.+.++... ..+..+.||.+ +|+||+++-||..|++|+.||.|
T Consensus 223 v~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~V 301 (476)
T KOG0646|consen 223 VALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKV 301 (476)
T ss_pred EEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCE
Confidence 99999 8999999999999999877532 34567789998 99999999999999999999999
Q ss_pred EEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEE
Q 001535 940 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1058)
Q Consensus 940 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~ 980 (1058)
+|||+.+.++++++.... ++|+.+++.|-.+-...
T Consensus 302 cvWdi~S~Q~iRtl~~~k------gpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 302 CVWDIYSKQCIRTLQTSK------GPVTNLQINPLERGIIL 336 (476)
T ss_pred EEEecchHHHHHHHhhhc------cccceeEeeccccceec
Confidence 999999999888776322 88899988665443333
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=201.81 Aligned_cols=288 Identities=11% Similarity=0.213 Sum_probs=232.3
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCC-EE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YV 421 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l 421 (1058)
-.+.|+||.|+|.-. +|.+++.|++++||.+.......-.. +.--..+|.+.+|.|+|. .+
T Consensus 212 s~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred CcCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEE
Confidence 357899999999998 78888999999999987533221100 222357999999999999 89
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccc-cCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeE
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 499 (1058)
++++.....+.||+.+.+..+ +..+.++. ..+.....+++++ +|+..+..|.|.+-. .++..+.+++ -.+.|..
T Consensus 274 ~~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred EecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 999999999999999887543 33344554 4677888999999 899999999999999 8888888776 5678999
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCC-cEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC-----
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE----- 573 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 573 (1058)
++|+ .+++.|++++.+|.|.+||++...+...+...+. .-++++.+++|.++|+|+ ..|.|.|||..+
T Consensus 350 ~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS----~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 350 FTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS----DSGIVNIYDGNSCFAST 423 (514)
T ss_pred EEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc----CcceEEEeccchhhccC
Confidence 9996 4778999999999999999999988877776655 557888999999999998 589999999653
Q ss_pred -CceeeeeecccCcceeEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeeEeccC-CCCCCCceEEeeCCCCEEEEEEC
Q 001535 574 -GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTA 649 (1058)
Q Consensus 574 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~ 649 (1058)
.+++.++..-.. .|+.+.|+++.+.|+.++ .+..+++-++.+......+... ...+.|+|++|+|.+.++|.|..
T Consensus 424 ~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 424 NPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 456666655554 789999999999988877 5678999998876665554332 22346899999999999999999
Q ss_pred CCcEEEEEcc
Q 001535 650 DNGFKILANA 659 (1058)
Q Consensus 650 dg~i~iw~~~ 659 (1058)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999874
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=189.95 Aligned_cols=246 Identities=17% Similarity=0.271 Sum_probs=184.5
Q ss_pred CCCcccEEEEEEecC-cceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEE
Q 001535 761 TDTSSKVVRLLYTNS-AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1058)
Q Consensus 761 ~~~~~~i~~l~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 839 (1058)
.+|.-.|..+.|-|- ...+.+++-|.+++|||.++-.. ...+. .++.|.+-++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~-----------------------a~~F~---me~~VYsham 151 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE-----------------------AVDFK---MEGKVYSHAM 151 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeeccccee-----------------------eEEee---cCceeehhhc
Confidence 347888899888884 44555666699999998654211 00111 4566777777
Q ss_pred ecC---CCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCc-eeee-----
Q 001535 840 SKN---DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKS----- 909 (1058)
Q Consensus 840 s~d---g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~-~~~~----- 909 (1058)
||= --++|+|. +-+|++.|+.+|....++.+|.+.|.++.|||...-+||+|+.||.|++||++.. .+..
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 773 23667777 5679999999999999999999999999999966667999999999999999754 2222
Q ss_pred ---------EecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCC-EEE
Q 001535 910 ---------KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV-RML 979 (1058)
Q Consensus 910 ---------~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~ 979 (1058)
.-.+|.+.|++++|+.||.++++++.|..+++|+..+|+-...-............-..+. +.+.. ++.
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~ 310 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVL 310 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEE
Confidence 2346889999999999999999999999999999998864322222211111111112233 33333 333
Q ss_pred EEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001535 980 VVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 980 ~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
.-.++.+.++++-+++.++.+..| ...+.+.++-|+-+...+|..|+.|..|-.
T Consensus 311 ~p~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 311 FPNDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EecCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence 346799999999999999999887 789999999999999999999999999976
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=211.04 Aligned_cols=282 Identities=16% Similarity=0.254 Sum_probs=226.5
Q ss_pred ceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCce-EEeeC-CCCEEEEEECCCc
Q 001535 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSK-EGNLLAVTTADNG 652 (1058)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-v~~s~-~~~~l~~~~~dg~ 652 (1058)
++.+.+.+|.. .+..+++.+ +..+++++.||++++|+-..++.+......++.+-|.+ +++-+ ++..+++|+.|++
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCcc-chheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 45677888887 677777654 45899999999999999887777665555555545555 77765 5556999999999
Q ss_pred EEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccC
Q 001535 653 FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVD 732 (1058)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1058)
|.+|..... ..+..+
T Consensus 83 i~v~~~~~~-~P~~~L---------------------------------------------------------------- 97 (745)
T KOG0301|consen 83 IIVFKLSQA-EPLYTL---------------------------------------------------------------- 97 (745)
T ss_pred EEEEecCCC-Cchhhh----------------------------------------------------------------
Confidence 999987654 111111
Q ss_pred CCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCccccccccee
Q 001535 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1058)
Q Consensus 733 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~ 812 (1058)
.+|...|.++....++. +++++.|.++++|....-
T Consensus 98 ----------------------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l---------------- 132 (745)
T KOG0301|consen 98 ----------------------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL---------------- 132 (745)
T ss_pred ----------------------------hccccceeeeecCCcCc-eEecccccceEEecchhh----------------
Confidence 22888888998888887 999999999999964321
Q ss_pred eccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEE
Q 001535 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1058)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg 891 (1058)
.. .+.+ |...|.+++.-|++ .+++|+ |.+|++|.- ++.++++.+|..-|+.+++-+ ++ .++++
T Consensus 133 --------~~-~l~g--H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-~~-~flSc 196 (745)
T KOG0301|consen 133 --------VY-SLQG--HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-DS-HFLSC 196 (745)
T ss_pred --------hc-ccCC--cchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-CC-CeEee
Confidence 11 1333 99999999999988 555666 999999986 788999999999999999997 54 56789
Q ss_pred ECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEE
Q 001535 892 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 971 (1058)
Q Consensus 892 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 971 (1058)
++||.|++|++ +|+++.+..+|+.-|.+++...++..++|+|.|++++||+.. ++.+.+.+.. ..+-++.+
T Consensus 197 sNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt------tsiWsa~~ 267 (745)
T KOG0301|consen 197 SNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT------TSIWSAKV 267 (745)
T ss_pred cCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc------cceEEEEE
Confidence 99999999998 889999999999999999988888999999999999999988 5666665543 56788888
Q ss_pred cCCCCEEEEEECCeEEEEECCC
Q 001535 972 NADQVRMLVVHETQLAIYDASK 993 (1058)
Q Consensus 972 s~d~~~l~~~~d~~v~v~d~~~ 993 (1058)
-++|..++.++||.|+||....
T Consensus 268 L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 268 LLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eeCCCEEEeccCceEEEEEecc
Confidence 8999999999999999999773
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-22 Score=189.88 Aligned_cols=271 Identities=15% Similarity=0.111 Sum_probs=208.7
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCC
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 484 (1058)
....|+.+.|+|.+..|++++-||++++||+...+... .-.|..++.+++|.++.. +++|+.||.|+.+|...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46789999999999999999999999999999874433 235999999999998665 89999999999999655
Q ss_pred CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCc
Q 001535 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1058)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~ 564 (1058)
.....+..|..+|.++...+.. ..+++|+.|++|++||.+.......+... ..|.++.. .|..|++++ .+.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~----~~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGT----SDR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccC-ceEEEEec--cCCEEEEee----cCc
Confidence 5666777899999999987643 57999999999999999874444444433 36777765 456777766 388
Q ss_pred eEEEEeCCCCceee-eeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeeEeccCCC-------CCCC
Q 001535 565 FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (1058)
Q Consensus 565 ~i~~wd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~-------~~~v 632 (1058)
.+.+||+++..... .....-...++++++-|++.-.++++-||.|.+=.++.. +....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 99999999865433 222223346889999999999999999999988776655 23333333321 1258
Q ss_pred ceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCC
Q 001535 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1058)
Q Consensus 633 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 697 (1058)
++++|+|-...+++|+.||.|.+||+.+. +.+..+... ...|.+++|+.||..||.+.+
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~-----~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKY-----ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcch-hhhhhccCC-----CCceEEEEeccCCCeEEEEec
Confidence 99999999899999999999999999887 334444333 234888999999999977654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=190.68 Aligned_cols=249 Identities=13% Similarity=0.221 Sum_probs=189.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCee
Q 001535 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1058)
Q Consensus 409 V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~ 487 (1058)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|++|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999977554 5889999999999999999 899999999999999 999999
Q ss_pred EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCC----cEEEEEEccCCCEEEEEeccCCCC
Q 001535 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----WCTTMLYSADGSRLFSCGTSKDGD 563 (1058)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----~i~~i~~s~~~~~l~~~~~~~~~~ 563 (1058)
+.+. ..++|+.+.|+|......+++--. ..-.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~-~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIME-ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEec-CCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 8887 578999999999876555555433 3344444443222221111111 2233468899999999984 8
Q ss_pred ceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-------cee--eEeccCCCCCCCce
Q 001535 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-------NIL--TSTDAEGGLPNLPR 634 (1058)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~--~~~~~~~~~~~v~~ 634 (1058)
|.+.++|..+.+++..++-.....|..+.++..|.+|+.-+.|..|+.|+...- +.. ..+.---....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999999888766447888999999999999999999999998631 111 11110011123468
Q ss_pred EEeeCCCCEEEEEEC-CCcEEEEEccCCcccccccc
Q 001535 635 LRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVE 669 (1058)
Q Consensus 635 v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~ 669 (1058)
++|+.+|.+++.++. .+.++||....| ...+.+.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILh 289 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILH 289 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeec
Confidence 999999999887765 567999998776 3444333
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-22 Score=186.13 Aligned_cols=302 Identities=14% Similarity=0.208 Sum_probs=226.7
Q ss_pred eecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC-CC
Q 001535 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DG 418 (1058)
Q Consensus 340 ~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 418 (1058)
.-.|.+.|+++.+.|..-+++.+|+.||.|.+||++.........+- -+ ..|. ....--.+|.-.|.++.|-| |.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-~k-~~c~--v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-AK-HKCI--VAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-eh-eeee--ccccCCccceeeeeeeEEeeecC
Confidence 34599999999999864447999999999999999765422110000 00 0000 11223567999999999999 77
Q ss_pred CEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCC-eeEEEEEeCCCcEEEEe-cCCCeeEEeecccCC
Q 001535 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1058)
Q Consensus 419 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~-~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~ 496 (1058)
..+.+++.|.+++|||..+-+... .+ .-.+.|++-+|||-.. .-++++|..|-.|++.| .+|..-+++.||.+.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred ceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 788899999999999999876544 23 2456788888888643 22677888888999999 999999999999999
Q ss_pred eeEEeecccCCceEEEEEeeCCeEEEEecCCC-CceEEe--------------eCCCCcEEEEEEccCCCEEEEEeccCC
Q 001535 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDY--------------DAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1058)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~--------------~~~~~~i~~i~~s~~~~~l~~~~~~~~ 561 (1058)
|.++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.++++++.
T Consensus 191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt--- 266 (397)
T KOG4283|consen 191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT--- 266 (397)
T ss_pred eEEEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC---
Confidence 99999998754 68999999999999999765 332222 234557899999999999999985
Q ss_pred CCceEEEEeCCCCceeeeeec---ccCc---ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceE
Q 001535 562 GDSFLVEWNESEGTIKRTYAG---FRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1058)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~---~~~~---~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v 635 (1058)
+..+++|+...|+....-.+ +.+. .+. +. +.+...++.--.++.+.++++-.+..+..+..+. ..|.|.
T Consensus 267 -d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~ 341 (397)
T KOG4283|consen 267 -DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCA 341 (397)
T ss_pred -ccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEE
Confidence 88999999988753221111 1110 111 22 3334445555566899999999999999998774 479999
Q ss_pred EeeCCCCEEEEEECCCcEEEEEc
Q 001535 636 RFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
++.|+=+...+|..|+.|..|-.
T Consensus 342 ~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 342 AYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecCchhhhhccccCCccccccc
Confidence 99999889999999999999976
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=200.46 Aligned_cols=294 Identities=16% Similarity=0.239 Sum_probs=224.7
Q ss_pred CCCcEEEEEeecCCC-eEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC-CCCE
Q 001535 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~-~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 420 (1058)
+...|+|++|+|... .++|+|...|+|-+||+.+.+.... ....+..|+++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---------------~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---------------GVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---------------ceEEeccCCccccceEecCCChhh
Confidence 788999999999865 6899999999999999974443322 1134788999999999999 5568
Q ss_pred EEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeEEeecccCCee
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~h~~~v~ 498 (1058)
+.+.+.||+|+.-|++++.. ..+..+......+.++.|+.+.. .++.+..=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999987642 22223434556788899999888 677788778999999 55555777888999999
Q ss_pred EEeecccCCceEEEEEeeCCeEEEEecCCCCce----EEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCC--
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 572 (1058)
+++++|-.. .++++++.|++.++||++..... +....|...|.+..|||.+-.|++.+ .|..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~----~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC----QDNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec----cCCceEEeecccc
Confidence 999998754 79999999999999999865443 34456778999999999888888877 49999999983
Q ss_pred --CCceeeeeecccCc----ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCce-EEeeCCCC-EE
Q 001535 573 --EGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGN-LL 644 (1058)
Q Consensus 573 --~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-v~~s~~~~-~l 644 (1058)
.-....++...... ...-..|.|+..++++|..-..|-|+|-..++.+..+..+... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 33333333322111 1233689999999999998889999999999877776544332 3443 58999877 55
Q ss_pred EEEECCCcEEEEEccC
Q 001535 645 AVTTADNGFKILANAI 660 (1058)
Q Consensus 645 ~~~~~dg~i~iw~~~~ 660 (1058)
+.++..|.|+||..+.
T Consensus 481 aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccCCccceEEEEecCC
Confidence 5556678899987543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=203.88 Aligned_cols=205 Identities=17% Similarity=0.214 Sum_probs=154.4
Q ss_pred EEEEecCCCEEEEE-e-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCC-CEEEEEccCceeeeEec
Q 001535 836 CIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLK 912 (1058)
Q Consensus 836 ~~~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg-~v~iwd~~~~~~~~~~~ 912 (1058)
.++++|+++.++++ . ++.|++||+.+++.+..+.. ...+.+++|+| +++++++++.++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 46677777766544 3 67899999888877776653 33467899999 899999888775 56788998887765544
Q ss_pred ccCCCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeceEEEecCCCCC-CCCceEEEEcCCCCEEEEE--ECCeEEE
Q 001535 913 GHQKRITGLAFSTSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLVV--HETQLAI 988 (1058)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~s~d~~~l~~~--~d~~v~v 988 (1058)
. ...+..++|+|+|++|+.+ ..++.|++||+.+++....+......... ......++|+||+++++++ .++.+.+
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 2 2345789999999988644 46899999999998876665543211110 1234578999999986653 5678999
Q ss_pred EECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeEEEEEcC
Q 001535 989 YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT-FCDGNIGVFDADTLRLRCYIAP 1047 (1058)
Q Consensus 989 ~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~-~~dg~i~iw~~~~~~~~~~~~~ 1047 (1058)
||..+++.+..+.. ...+.+++|+|+|++|+++ ..++.|.+||+.+++.+..+..
T Consensus 234 ~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 234 VDAKTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EECCCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 99998887765532 3578899999999999886 4689999999999999888864
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=203.68 Aligned_cols=286 Identities=13% Similarity=0.174 Sum_probs=205.9
Q ss_pred eEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcce
Q 001535 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1058)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i 588 (1058)
..+++++.|+.|++||+.++.....+..+. .+.+++|+|+++.+++++. .++.|++||..+++....+..+.. +
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~--~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPSGPD--P 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccCCCC--c
Confidence 478899999999999998887777666543 4678999999998755442 478999999999988877765443 4
Q ss_pred eEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCc-EEEEEccCCccccc
Q 001535 589 GVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIGLRSLR 666 (1058)
Q Consensus 589 ~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~ 666 (1058)
..++++|+++.++++ +.++.|++||+.+++.+..+.... .+.+++|+|+|.++++++.++. +.+|+..++.. ..
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~ 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VD 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EE
Confidence 568899999987665 468999999999888777665321 3678999999999998887653 45556433200 00
Q ss_pred cccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeee
Q 001535 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (1058)
Q Consensus 667 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~ 746 (1058)
T Consensus 152 -------------------------------------------------------------------------------- 151 (300)
T TIGR03866 152 -------------------------------------------------------------------------------- 151 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeecc
Q 001535 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 826 (1058)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1058)
. + .
T Consensus 152 -------~------------------------~---------------------------------------------~- 154 (300)
T TIGR03866 152 -------N------------------------V---------------------------------------------L- 154 (300)
T ss_pred -------E------------------------E---------------------------------------------E-
Confidence 0 0 0
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEECCCceEEEEecCCC-----C--CeeEEEEecCCCcEEEE-EECCCC
Q 001535 827 GVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPP-----P--ASTFLAFHPQDNNIIAI-GTEDST 896 (1058)
Q Consensus 827 ~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~-----~--~i~~l~~s~~~~~~las-g~~dg~ 896 (1058)
......+++|++||+++++++ ++.|++||+.+++.+..+..+. . ....++|+| +++++++ ...++.
T Consensus 155 ---~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 155 ---VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANR 230 (300)
T ss_pred ---cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCe
Confidence 011123567777777665443 6778888888777666554221 1 234688999 7877544 445678
Q ss_pred EEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcC
Q 001535 897 IHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1058)
Q Consensus 897 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 973 (1058)
+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++++..+... .....++|+|
T Consensus 231 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~ 300 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-------RLPWGVVVRP 300 (300)
T ss_pred EEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-------cccceeEeCC
Confidence 9999999988776554 44578999999999999886 46899999999999987777653 4457777765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=200.89 Aligned_cols=252 Identities=16% Similarity=0.223 Sum_probs=202.8
Q ss_pred ccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCcce-------eeeeecccccCeEEEEeecCCCeeEEEEEeC
Q 001535 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLR-------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~~~~~-------~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~ 473 (1058)
...|.+.|+.+.+-|. ...+|+++..+.|.|||..+-.... .-.+|.+|...-++++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3458999999999995 5567778889999999987543222 22268899998899999998776 7999999
Q ss_pred CCcEEEEe--cCCC------eeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecC--CCCceEEeeCCCCcEEE
Q 001535 474 DKLIKVWE--LSGR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (1058)
Q Consensus 474 d~~i~iwd--~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~i~~ 543 (1058)
|++|++|| ..+. +...+.+|.+.|..++|++..+ .++++++.|+.+.+||.+ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 99999999 2222 2467889999999999998754 799999999999999999 45556677888999999
Q ss_pred EEEccCCCE-EEEEeccCCCCceEEEEeCCCC-ceeeeeecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce-
Q 001535 544 MLYSADGSR-LFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI- 619 (1058)
Q Consensus 544 i~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~- 619 (1058)
++|+|-+.+ ||+++ .|++|.+||+++. +.+.++.+|.. .|..+.|+|.. ..|++++.|+.+.|||+..-..
T Consensus 278 ~~fnp~~~~ilAT~S----~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGS----ADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEecc----CCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999996655 55555 4999999999985 56788899987 89999999976 5677788999999999865222
Q ss_pred -----------eeEeccCCCCCCCceEEeeCCCC-EEEEEECCCcEEEEEccC
Q 001535 620 -----------LTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAI 660 (1058)
Q Consensus 620 -----------~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~ 660 (1058)
-..+...||...|..+.|+|+.. .+++.+.|+.+.||....
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 12244557788899999999765 567888999999999864
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-23 Score=220.33 Aligned_cols=235 Identities=17% Similarity=0.330 Sum_probs=212.7
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 45588999999987788999999999999999987665544 5889999999999999988 899999999999999
Q ss_pred -cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
.+++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~--- 173 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG--- 173 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC---
Confidence 99999999999999999999987 457899999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCC
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1058)
.|..+++||...|+....|.+|.. .+..+.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+|+
T Consensus 174 -ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 174 -EDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred -Ccceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 379999999999999999999987 7888999999888999999999999999998888777644 457999999999
Q ss_pred CCEEEEEECC
Q 001535 641 GNLLAVTTAD 650 (1058)
Q Consensus 641 ~~~l~~~~~d 650 (1058)
+..+.+|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9998888654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=199.79 Aligned_cols=282 Identities=14% Similarity=0.214 Sum_probs=215.6
Q ss_pred ccccCCCCcceEEeec-CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCC
Q 001535 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1058)
.-++.++|..+...+. |++.|.|+...|.|.+ ||+|+.||+|+||.+.+|.++.... -
T Consensus 382 p~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~w-lasGsdDGtvriWEi~TgRcvr~~~--------------------~ 440 (733)
T KOG0650|consen 382 PKDLRPFPTRCALVYRGHTGLVRSISVDPSGEW-LASGSDDGTVRIWEIATGRCVRTVQ--------------------F 440 (733)
T ss_pred hhhcCCCcceeeeeEeccCCeEEEEEecCCcce-eeecCCCCcEEEEEeecceEEEEEe--------------------e
Confidence 4466777777766655 9999999999999995 8999999999999999999986421 2
Q ss_pred CcceEEEEECCCCC--EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEE----eCCCcEEE
Q 001535 406 PISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----GDDKLIKV 479 (1058)
Q Consensus 406 ~~~V~~l~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~----~~d~~i~i 479 (1058)
.+.|.||+|+|.++ .||++-.+ .+.|-+..-|..+....+ .. .|+++ ..|+.+..
T Consensus 441 d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t----------------~e--ll~~~~~~~~p~~~~~~ 501 (733)
T KOG0650|consen 441 DSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPT----------------KE--LLASAPNESEPDAAVVT 501 (733)
T ss_pred cceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcch----------------hh--hhhcCCCccCCccccee
Confidence 45899999999765 45555444 366666554432221000 01 12222 23567888
Q ss_pred Ee-cCC----CeeEEeecccCCeeEEeecccCCceEEEEEeeC---CeEEEEecCCCCceEEeeCCCCcEEEEEEccCCC
Q 001535 480 WE-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1058)
Q Consensus 480 wd-~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~ 551 (1058)
|. .+. .-++..-.|...|..+.||. .|.+|++...+ ..|.|.++.....+..+....+.+.++.|.|...
T Consensus 502 W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p 579 (733)
T KOG0650|consen 502 WSRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP 579 (733)
T ss_pred echhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc
Confidence 88 311 11345566899999999987 56799887764 5688998887777777777788899999999999
Q ss_pred EEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCC
Q 001535 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLP 630 (1058)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~ 630 (1058)
++++++ ...|++||+..+.+++.+..... .+..++++|.|..|++|+.|+.+..+|+.-. ++.+.+..|. .
T Consensus 580 ~lfVaT-----q~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~ 651 (733)
T KOG0650|consen 580 YLFVAT-----QRSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--K 651 (733)
T ss_pred eEEEEe-----ccceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--h
Confidence 999887 67899999999888887776555 7889999999999999999999999999754 4556666554 4
Q ss_pred CCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 631 NLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 631 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
.++.|+|++.-.++++|+.||++.|+..
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEee
Confidence 7999999999999999999999999863
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=202.29 Aligned_cols=286 Identities=17% Similarity=0.207 Sum_probs=209.9
Q ss_pred cCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 001535 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433 (1058)
Q Consensus 354 p~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iw 433 (1058)
|+.+++||.+..||.|.++|......... ..+......|...|..++|-|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 45567999999999999999865332210 00112356799999999999977789999999999999
Q ss_pred EecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCe-------------------------
Q 001535 434 SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK------------------------- 486 (1058)
Q Consensus 434 d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~------------------------- 486 (1058)
|+++++..... .+.||.+.|.+++|.|++.. .|++|+.||.|.||| .++.-
T Consensus 128 dvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 128 DVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 99998876643 46799999999999999887 899999999999999 33310
Q ss_pred -eEEeecccCCe----eEEeecccCCceEEEEEee-CCeEEEEecCCCCceEE--------eeCC---CCcEEEEEEccC
Q 001535 487 -LFNFEGHEAPV----YSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVD--------YDAP---GHWCTTMLYSAD 549 (1058)
Q Consensus 487 -~~~~~~h~~~v----~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~--------~~~~---~~~i~~i~~s~~ 549 (1058)
+.....+...| +.+.| .|...||+++. |+.|+|||++....... +..+ ...+.++.....
T Consensus 206 r~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred cccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 01112233333 33443 25578888887 99999999987544321 1222 236778888888
Q ss_pred CCEEEEEeccCCCCceEEEEeCCCC--ceeeeeecccCccee-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccC
Q 001535 550 GSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1058)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 626 (1058)
|.++++.+. |+.|++|++.+. .++..+.++...... .-..+|++.++++|+.|...++|.+.+.+.-..+. .
T Consensus 283 Gt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-~ 357 (720)
T KOG0321|consen 283 GTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-L 357 (720)
T ss_pred CCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-h
Confidence 888887774 999999998864 344555554432222 23578999999999999999999998766433332 3
Q ss_pred CCCCCCceEEeeCC-CCEEEEEECCCcEEEEEccCCc
Q 001535 627 GGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGL 662 (1058)
Q Consensus 627 ~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~ 662 (1058)
+|...|++++|.|. -.-++++++|..++||++..+.
T Consensus 358 Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 358 GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 56668999999883 3456777999999999997663
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-21 Score=197.98 Aligned_cols=240 Identities=10% Similarity=0.152 Sum_probs=178.4
Q ss_pred ccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcE
Q 001535 398 QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1058)
Q Consensus 398 ~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 477 (1058)
+..++.||++.|.||+..|.|.+||+|+.||+|+||.+.+|.+++.. ...+.|.|++|+|.+..-+|+.+ .+..+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA-~~~~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVA-VGECV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEE-ecCce
Confidence 44578999999999999999999999999999999999999988853 23457999999999886344444 44447
Q ss_pred EEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEE----eeCCeEEEEecCCCC----ceEEeeCCCCcEEEEEEcc
Q 001535 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----AIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSA 548 (1058)
Q Consensus 478 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----~~dg~i~~wd~~~~~----~~~~~~~~~~~i~~i~~s~ 548 (1058)
.|-+ .-|..+..-.. ...|+++ ..++.+..|.-.... .......+...|..+.|+.
T Consensus 467 ~ivnp~~G~~~e~~~t---------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPT---------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred EEeCccccchhhhcch---------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 7777 54432211100 0111111 234567778654221 1234456778999999999
Q ss_pred CCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001535 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1058)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 628 (1058)
.|.+|++...+. +...|.|+++.......-|....+ .+.++.|+|...+|++++.. .|+|||+..++.++.+...
T Consensus 532 kGDYlatV~~~~-~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg-- 606 (733)
T KOG0650|consen 532 KGDYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTG-- 606 (733)
T ss_pred CCceEEEeccCC-CcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcC--
Confidence 999999887532 467889999887766666655444 78889999999999888764 7999999988877776532
Q ss_pred CCCCceEEeeCCCCEEEEEECCCcEEEEEccCCc
Q 001535 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1058)
Q Consensus 629 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1058)
...|..++.+|.|..|+.|+.|+.+..+|+.-+.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 3368999999999999999999999999986553
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-22 Score=211.29 Aligned_cols=245 Identities=14% Similarity=0.231 Sum_probs=196.7
Q ss_pred cEEEEEeecCCCeEEEEEeccceEEEEEccC---CCccccccceeecccccCcccccccccCCCcceEEEEECC-CCCEE
Q 001535 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAM---RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 421 (1058)
.+..|+|+..-..+|||++..|.|.+||+.. .+.+ ..+..|+..|+++.|++ .-.+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-------------------~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-------------------TVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-------------------hHhhhhccceeeeeeccCCccEE
Confidence 3556778865556899999999999999976 2222 24888999999999999 46788
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeEEeecccCCeeE
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYS 499 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~h~~~v~~ 499 (1058)
++|+.||+|++||++..+... ++.+....|.++.|+|.... .|+++.+.|.+.+|| ...++...+.+|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999877555 56678899999999997655 899999999999999 566788899999999999
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCceEEe-eCCCCcEEEEEEccCCCE-EEEEeccCCCCceEEEEeCCCCc-e
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGT-I 576 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~i~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~-~ 576 (1058)
+.|+| ++.+||+||.|++|++||+.+....... .....++.++.|-|+..+ |++++. -.+..|++||++..- +
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccc
Confidence 99988 6689999999999999999865544333 334568999999998765 555543 248899999998764 4
Q ss_pred eeeeecccCcceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCc
Q 001535 577 KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVN 618 (1058)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~ 618 (1058)
..++..|.. .++.++|.. |...+.+++.||.|..-..+++.
T Consensus 302 ~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 302 YATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 567777877 788888865 44677888899888766555443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-20 Score=176.61 Aligned_cols=255 Identities=11% Similarity=0.156 Sum_probs=193.9
Q ss_pred cccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCC-CcceeeeeecccccCeEEEEeecC--CCeeEEEEEeCCCcE
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i 477 (1058)
+-.+|.+-|.|+.|.+-|+.+|+|+.|++|+|||.... ...........|.+.|..+.|.+. |+ .+++++.|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence 36689999999999999999999999999999996433 333444467899999999999764 66 89999999999
Q ss_pred EEEec-CC---------CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE------Eee------
Q 001535 478 KVWEL-SG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV------DYD------ 535 (1058)
Q Consensus 478 ~iwd~-~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~------~~~------ 535 (1058)
.||.. .. ....++....+.|+.+.|.|..-|-.+++++.||.+|+|+.-...... ++.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99983 11 123456677889999999999889999999999999999865433222 111
Q ss_pred -CCCCcEEEEEEccC---CCEEEEEecc-CCCCceEEEEeCCCC----ceeeeeecccCcceeEEEEcCCC----CEEEE
Q 001535 536 -APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQ----NHFLA 602 (1058)
Q Consensus 536 -~~~~~i~~i~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~i~~~~~~~~~----~~l~~ 602 (1058)
.+..+..|+.|+|. ..+|++++.+ ...-+.++||....+ ..+.++.++.. +|+.++|.|+- ..|++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEE
Confidence 23447789999874 3467777631 112236778875543 34566777777 89999999963 46888
Q ss_pred EeCCCcEEEEECCCCc-----------------eeeEe-ccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEcc
Q 001535 603 VGEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 603 ~~~dg~i~vwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
++.|| |+||++.... .+..+ ...+|.+.|..+.|+-.|..|++.++||.||+|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 9999987311 12222 244677789999999999999999999999999764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=196.36 Aligned_cols=470 Identities=12% Similarity=0.103 Sum_probs=287.5
Q ss_pred CeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCce
Q 001535 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1058)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 531 (1058)
.|..++|-|||..++++. +..+.+|| .+|..++++++|.+.|++++|+. ||+.+++|+.|+.|.+|...-.+.
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEcc--CCceeccCCCceeEEEecccccce-
Confidence 799999999999743333 45799999 99999999999999999999955 889999999999999997543222
Q ss_pred EEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEE
Q 001535 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1058)
Q Consensus 532 ~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 611 (1058)
.. -.|+..|.||.|+|-...+++++- ...-+|........+ .+. ...+.+++|..||.+++.|-.||+|.+
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsL-----sdFglWS~~qK~V~K-~ks--s~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSL-----SDFGLWSPEQKSVSK-HKS--SSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcch-----hhccccChhhhhHHh-hhh--heeEEEeeecCCCcEEEEeccCceEEe
Confidence 22 347789999999999999999973 446778866543322 111 125778999999999999999999999
Q ss_pred EECCCCceeeEecc-CCCCCCCceEEeeCCC-----CEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceee
Q 001535 612 WDMDNVNILTSTDA-EGGLPNLPRLRFSKEG-----NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1058)
Q Consensus 612 wd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 685 (1058)
-+. +++....+.. .+...+|++++|+|.. ..+++.....++.++.+... .+..-+...++ ..++.
T Consensus 159 RNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~Fd-----P~Cis- 229 (1081)
T KOG1538|consen 159 RNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALNFD-----PCCIS- 229 (1081)
T ss_pred ecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccccCCCC-----chhhe-
Confidence 875 4444444433 3456689999999953 46788888888888877542 11111111111 12233
Q ss_pred eeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcc
Q 001535 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (1058)
Q Consensus 686 s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1058)
+.++|.++..|++|+.+.+|.... .+.-++.. ...
T Consensus 230 ------------------------------------Yf~NGEy~LiGGsdk~L~~fTR~G------vrLGTvg~---~D~ 264 (1081)
T KOG1538|consen 230 ------------------------------------YFTNGEYILLGGSDKQLSLFTRDG------VRLGTVGE---QDS 264 (1081)
T ss_pred ------------------------------------eccCCcEEEEccCCCceEEEeecC------eEEeeccc---cce
Confidence 345556667888888888887542 12222222 667
Q ss_pred cEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccc-----cceeeccCCCceeeeeccCCCCCCCeeEEEEe
Q 001535 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA-----VPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1058)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1058)
.|+.++..|+++.++.|+.||++..|++-.......-...... .+.+-...+++..... -.+-|..+++
T Consensus 265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIk-----C~DLVkKiai- 338 (1081)
T KOG1538|consen 265 WIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIK-----CKDLVKKIAI- 338 (1081)
T ss_pred eEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeee-----HHHHHHHHHh-
Confidence 8999999999999999999999999987543211100000000 0000011111111100 0011111222
Q ss_pred cCCCEEEEEeCCcEEEEECCCceEEEE-ecCCCC-----CeeEEEEecCCCcEEEEEECCCCEEEEEccCce--------
Q 001535 841 KNDSYVMSATGGKISLFNMMTFKVMTT-FMSPPP-----ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-------- 906 (1058)
Q Consensus 841 ~dg~~la~~~dg~i~vwd~~~~~~~~~-~~~~~~-----~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~-------- 906 (1058)
-.+.||+--..+|.+|.+.+++.... +..... ...-+... +..++. +.+..+.-+|...-+
T Consensus 339 -YrnrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc---~~HiVl-CqekrLqClDF~Gvk~ReW~M~S 413 (1081)
T KOG1538|consen 339 -YRNRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVC---ANHIVL-CQEKRLQCLDFSGVKEREWQMES 413 (1081)
T ss_pred -hhhhheecccceEEEEeccccccccchhHHHHHHHhhccceEEEEE---cCeEEE-EcccceeeecccchhhhhhhHHH
Confidence 22355665567788888876543211 100000 11112222 223432 356677777764321
Q ss_pred eeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEEC-Ce
Q 001535 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE-TQ 985 (1058)
Q Consensus 907 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d-~~ 985 (1058)
.++-++--.++ +...-|+.|-.||.|.--=+++.-.+. .......|.++..+...+.||+..| +.
T Consensus 414 ~iRYikV~GGP-------~gREgL~vGlknGqV~kiF~dN~~PiL-------l~~~~tAvrClDINA~R~kLAvVDD~~~ 479 (1081)
T KOG1538|consen 414 LIRYIKVIGGP-------PGREGLLVGLKNGQVLKIFVDNLFPIL-------LLKQATAVRCLDINASRKKLAVVDDNDT 479 (1081)
T ss_pred HHHhhhhhcCC-------CCcceeEEEecCCcEEEEEecCCchhh-------eecccceeEEeeccCCcceEEEEccCCe
Confidence 11111111122 123457778888765432233311111 1111277889999999999999754 56
Q ss_pred EEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEE
Q 001535 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 1023 (1058)
Q Consensus 986 v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 1023 (1058)
..++|+.+++.+.+ ...+.+++|.....-++
T Consensus 480 c~v~DI~t~elL~Q-------Epg~nSV~wNT~~E~Ml 510 (1081)
T KOG1538|consen 480 CLVYDIDTKELLFQ-------EPGANSVAWNTQCEDML 510 (1081)
T ss_pred EEEEEccCCceEee-------cCCCceEEeeccccceE
Confidence 77889999987765 34567777776544333
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-22 Score=212.19 Aligned_cols=233 Identities=11% Similarity=0.193 Sum_probs=209.6
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
-|...|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|..+|.|+.|+++..+|
T Consensus 26 ~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLL 85 (825)
T ss_pred hhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhh
Confidence 3888999999866777 799999999999999865444332 78999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEE
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 500 (1058)
++|+.+|+|++||++.++.++ +|.+|...+.++.|+|-+. ++++|+.|+.+++|| ....+.+.+.+|...|..+
T Consensus 86 aagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred cccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 999999999999999988777 7889999999999999999 789999999999999 7788999999999999999
Q ss_pred eecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeee
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1058)
.|.| +|.++++++.|.++++||+..++....|..|...+.++.|+|..-+++.|+. |..+++||+++.+.+...
T Consensus 161 ~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 161 RLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSG 234 (825)
T ss_pred eecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeecc
Confidence 9966 7799999999999999999999999999999999999999999888888884 999999999999988887
Q ss_pred ecccCcceeEEEEcCCCCEEEEEeCC
Q 001535 581 AGFRKKSNGVVQFDTTQNHFLAVGED 606 (1058)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1058)
..... .|.+..|++++..+++|...
T Consensus 235 ~~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 235 KPETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCccC-CceeeeecCCceeeecCchh
Confidence 77655 78999999999988888754
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-21 Score=203.72 Aligned_cols=296 Identities=12% Similarity=0.141 Sum_probs=223.6
Q ss_pred CCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC-CCCEEE
Q 001535 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1058)
Q Consensus 344 ~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 422 (1058)
+....+|...++-..+ ++++ .....|+.+....... ++.+.. .. -..-...+..|+|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qi-v~AG-rs~lklyai~~~~~~~--~~~~~~-----k~-----kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQI-VVAG-RSLLKLYAINPNDFSE--KCNHRF-----KT-----KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCccee-EEec-ccceeeEeeCcccCCc--ceeeec-----cc-----ccceeeehhhcccccchhhhhe
Confidence 4456677777887654 4443 3477788776543221 111110 00 000112455688876 678999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEe
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 501 (1058)
+++..|.|.+||+.....-+.+..+..|+..++++.|++-... +|++||.||+|++|| ...+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222233368899999999999998877 899999999999999 88888889999999999999
Q ss_pred ecccCCceEEEEEeeCCeEEEEecCCCCc-eEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeee
Q 001535 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1058)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1058)
|+|.. +..++++...|.+++||++.... ...+..|.++|.++.|+|++.+||+||+ |+.|++||..+.+.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99875 67999999999999999986544 5578889999999999999999999995 999999999987766655
Q ss_pred ecccCcceeEEEEcCCCCE-EEEEe--CCCcEEEEECCCCc-eeeEeccCCCCCCCceEEeeC-CCCEEEEEECCCcEEE
Q 001535 581 AGFRKKSNGVVQFDTTQNH-FLAVG--EDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1058)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 655 (1058)
.-+...++..+.|-|...+ |++++ .|-.|+|||+...- +..++. .|...++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCccHHHH
Confidence 5566668999999998755 44444 68899999997543 333444 4556789999976 5668889999998876
Q ss_pred EEccCC
Q 001535 656 LANAIG 661 (1058)
Q Consensus 656 w~~~~~ 661 (1058)
-..++.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=185.99 Aligned_cols=251 Identities=13% Similarity=0.134 Sum_probs=194.4
Q ss_pred ceEEEEECC-------CCCEEEEEeCCCeEEEEEecCCCcceeeee------------------ecccccCeEEEEeecC
Q 001535 408 SVSRVAWSP-------DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ------------------IDAHVGAVNDLAFAYP 462 (1058)
Q Consensus 408 ~V~~l~~sp-------dg~~las~~~dg~i~iwd~~~~~~~~~~~~------------------l~~h~~~v~~l~~s~d 462 (1058)
...|++|-. .|+|+|.|+.|..|.|||+.--..+....+ -.+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 445666632 378999999999999999853322211111 2379999999999998
Q ss_pred CCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcE
Q 001535 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1058)
Q Consensus 463 ~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i 541 (1058)
-+. +|+|||.|.+|++|| .+|++..++..|...|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|
T Consensus 255 ~~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V 332 (463)
T KOG0270|consen 255 FRN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV 332 (463)
T ss_pred cce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccce
Confidence 877 899999999999999 999999999999999999999987 45899999999999999998533322222234568
Q ss_pred EEEEEccCCCEEEEEeccCCCCceEEEEeCCCC-ceeeeeecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce
Q 001535 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI 619 (1058)
Q Consensus 542 ~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~ 619 (1058)
-.++|.|.....+.++. .+|.|+-+|++.. +++.++..|.+ .|.++++++.- ..+++++.|+.|++|++.....
T Consensus 333 Ekv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EEEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 89999998887776665 5999999999875 89999999998 89999998765 5678899999999999876544
Q ss_pred eeEeccCCCCCCCceEEeeCCC-CEEEEEECCCcEEEEEccCCccc
Q 001535 620 LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRS 664 (1058)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~ 664 (1058)
.......-..+...|.++.|+- -.++.|+..+.+++||+.+....
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3322221222235677777754 46778888888999999876433
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=186.58 Aligned_cols=211 Identities=18% Similarity=0.322 Sum_probs=172.3
Q ss_pred cCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CC
Q 001535 774 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG 852 (1058)
Q Consensus 774 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg 852 (1058)
....+++++|..|.|+|||+.. +++...+.+ |...|+++.++-...+||+++ .|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--HQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred hcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--CcceeEEEEecCCcceeEEeccCC
Confidence 3447899999999999998642 222234555 899999999999999999999 68
Q ss_pred cEEEEECCCceEEEEecCCC-CCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeE-ecccCCCeeEEEEcCCC-CE
Q 001535 853 KISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSL-NI 929 (1058)
Q Consensus 853 ~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~d~-~~ 929 (1058)
.|.|..+.++....+|.... ..|.-+.|||....+|.+++.+|.|.+||+.....+.. .+.|+.+...++|+|.. .+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 89999999988877777543 45668999995566788899999999999987766544 46799999999999964 68
Q ss_pred EEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCCe-eeeeeccCCCCC
Q 001535 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKME-RIRQWTPQDALS 1007 (1058)
Q Consensus 930 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~~-~~~~~~~~~~~~ 1007 (1058)
|++.|.|+.|.+||+........+... .+.+.++|+++|.+|++| ..|.|..||++... ++..+..| .
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~-------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah---~ 293 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTYS-------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH---D 293 (673)
T ss_pred EEEecccceEEEeecccccccceeeec-------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec---c
Confidence 889999999999999987766666555 778999999999999998 68999999999654 55665555 6
Q ss_pred CCEEEEEEccCC
Q 001535 1008 APISCAVYSCNS 1019 (1058)
Q Consensus 1008 ~~v~~l~~s~dg 1019 (1058)
..|++++|-+.-
T Consensus 294 ~sVt~vafq~s~ 305 (673)
T KOG4378|consen 294 ASVTRVAFQPSP 305 (673)
T ss_pred cceeEEEeeecc
Confidence 789999998864
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=192.35 Aligned_cols=400 Identities=14% Similarity=0.135 Sum_probs=263.7
Q ss_pred ceEEEEEeeCCeEEEEecCCCCce------EEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeee--
Q 001535 508 IQFIFSTAIDGKIKAWLYDTMGSR------VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-- 579 (1058)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~------~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-- 579 (1058)
.+.|+.+.+||.|.++|....... .....|...|..+.|.|....|++++ +|.++++||+.+.+++..
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas----GDsT~r~Wdvk~s~l~G~~~ 139 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS----GDSTIRPWDVKTSRLVGGRL 139 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc----CCceeeeeeeccceeeccee
Confidence 468899999999999987654433 45667888999999999555666666 699999999999998877
Q ss_pred eecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce--------------------eeEe-----ccCCCCCCCc
Q 001535 580 YAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI--------------------LTST-----DAEGGLPNLP 633 (1058)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~--------------------~~~~-----~~~~~~~~v~ 633 (1058)
+.+|.. .+.++||.+.+ ..|++|+.||.|.|||+.-... ...+ ....+...|.
T Consensus 140 ~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 140 NLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 888887 89999999966 5677799999999999854320 0000 0011122344
Q ss_pred e---EEeeCCCCEEEEEEC-CCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCC
Q 001535 634 R---LRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1058)
Q Consensus 634 ~---v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1058)
. +.+..|...||+++. |+.|++||+.......+.-.....
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~------------------------------------ 262 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD------------------------------------ 262 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc------------------------------------
Confidence 4 566678888998888 999999999876332221110000
Q ss_pred CCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeE
Q 001535 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1058)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~ 789 (1058)
.++........+.++.....|.+|++.+.|+.|.
T Consensus 263 ----------------------------------------------~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy 296 (720)
T KOG0321|consen 263 ----------------------------------------------KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIY 296 (720)
T ss_pred ----------------------------------------------CccCcccceeeeEEEEecCCCCeEEEEecCCcEE
Confidence 0000000234567788888899999999999999
Q ss_pred EeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceE-EEE
Q 001535 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV-MTT 867 (1058)
Q Consensus 790 vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~-~~~ 867 (1058)
+|++..-...+.+.... .+ ....-..-..+||+.++++|+ |...++|.+.+.+. ...
T Consensus 297 ~ynm~s~s~sP~~~~sg------------~~---------~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~ 355 (720)
T KOG0321|consen 297 FYNMRSLSISPVAEFSG------------KL---------NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL 355 (720)
T ss_pred EEeccccCcCchhhccC------------cc---------cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh
Confidence 99987655444333211 11 111122346789999999998 99999999987653 556
Q ss_pred ecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCce--------------eeeEecccCCCeeEEEEcCCCCEEEEE
Q 001535 868 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--------------VKSKLKGHQKRITGLAFSTSLNILVSS 933 (1058)
Q Consensus 868 ~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~--------------~~~~~~~h~~~V~~l~~s~d~~~l~s~ 933 (1058)
+.+|.-.|++++|.|..-.-++++++|..++||++..+- ....+++|.-.+..+.++-.+.+....
T Consensus 356 l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR 435 (720)
T KOG0321|consen 356 LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR 435 (720)
T ss_pred hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh
Confidence 779999999999998555667888999999999996541 223455666666666655444332221
Q ss_pred eCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-----ECCeEEEEECCCCeeeeeeccCCCCCC
Q 001535 934 GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-----HETQLAIYDASKMERIRQWTPQDALSA 1008 (1058)
Q Consensus 934 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-----~d~~v~v~d~~~~~~~~~~~~~~~~~~ 1008 (1058)
.+..++|.- ...++.+|++.-.+.+ ..-.|...+.+..+....-. ...|-.
T Consensus 436 --~~~~r~~ss---------------------P~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~-s~~~~~ 491 (720)
T KOG0321|consen 436 --EGMNRISSS---------------------PVSLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRG-SGGHLS 491 (720)
T ss_pred --hhccccccC---------------------ccchhcCcCCcccccCCCcccccccceecchhccCcccccc-cccccc
Confidence 333444432 2334445555444442 12235555554443332211 112345
Q ss_pred CEEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCC
Q 001535 1009 PISCAVYSCNSQLVFATFC-----------DGNIGVFDADTL 1039 (1058)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~-----------dg~i~iw~~~~~ 1039 (1058)
.|....+++.+..+++++- ++.+.+|....-
T Consensus 492 Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~ 533 (720)
T KOG0321|consen 492 SVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLH 533 (720)
T ss_pred ccccCCCccccccccccCcccccCCCCCcCcccccccccccC
Confidence 6666667777777888887 888998877543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=172.50 Aligned_cols=253 Identities=13% Similarity=0.210 Sum_probs=190.3
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC--CCC
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1058)
+|.+-|.|+.|.+-|++ +|+++.|++|+|||.++...-. . .....+.|.+.|..|.|.+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W-------~--------~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTW-------S--------CTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCce-------E--------EeeeEEecCCcEEEEEecCccccc
Confidence 58999999999999996 8999999999999976544321 1 1123677999999999976 599
Q ss_pred EEEEEeCCCeEEEEEecC------CCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeE----
Q 001535 420 YVGVAFTKHLIQLYSYAG------SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF---- 488 (1058)
Q Consensus 420 ~las~~~dg~i~iwd~~~------~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~---- 488 (1058)
.+|+++.|+++.||.-.. +..-....++......|+++.|.|.-..+.+++++.||.++||+ .+-..+.
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999997521 11222334566778899999999987777999999999999999 4433222
Q ss_pred --Eee-------cccCCeeEEeecccCC-ceEEEEEeeC-----CeEEEEecCCCCce----EEeeCCCCcEEEEEEccC
Q 001535 489 --NFE-------GHEAPVYSICPHHKEN-IQFIFSTAID-----GKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD 549 (1058)
Q Consensus 489 --~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~~wd~~~~~~~----~~~~~~~~~i~~i~~s~~ 549 (1058)
.++ .+..+..|+.|+++.- ..+|+.|+.+ +.+.||........ .++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 222 3556677888876532 2466666655 47899987665533 256678889999999995
Q ss_pred C----CEEEEEeccCCCCceEEEEeCCCC--------------------ceeeeeecccCcceeEEEEcCCCCEEEEEeC
Q 001535 550 G----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1058)
Q Consensus 550 ~----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1058)
- ..|++++ +|| |+||.+... +.+..+..|.. .+..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVAT----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEee----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 2 3566666 477 999988731 23345666766 7999999999999999999
Q ss_pred CCcEEEEECCC
Q 001535 606 DSQIKFWDMDN 616 (1058)
Q Consensus 606 dg~i~vwd~~~ 616 (1058)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999997653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=178.84 Aligned_cols=305 Identities=16% Similarity=0.213 Sum_probs=217.4
Q ss_pred EeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCcccc-ccceeecccccCcccccccccCCCcceEEEEECCC
Q 001535 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1058)
Q Consensus 339 ~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1058)
...+...+|..+.|.+++...+|||+.|..|+||.+..+..-.. ..+. -...+.+|...|+++.|+|+
T Consensus 8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~-----------y~s~Ls~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVE-----------YLSSLSRHTRAVNVVRFSPD 76 (434)
T ss_pred EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEE-----------EeecccCCcceeEEEEEcCC
Confidence 33445678999999998775699999999999999976544321 0111 12358899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEec--------C-----CCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cC
Q 001535 418 GNYVGVAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1058)
Q Consensus 418 g~~las~~~dg~i~iwd~~--------~-----~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~ 483 (1058)
|..||+|+.+|.|.+|... + .+.....+.+.+|...|..++|+||+. ++++++-|.++++|| ..
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEecc
Confidence 9999999999999999876 3 222334456789999999999999999 899999999999999 99
Q ss_pred CCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEee-------------------CCC----Cc
Q 001535 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------------APG----HW 540 (1058)
Q Consensus 484 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------------------~~~----~~ 540 (1058)
|..+..+..|...|..++|.| -++++++-+.|...+.+.+.......... .|. .-
T Consensus 155 G~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ceeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 999999999999999999966 55889998888866666554332221110 011 12
Q ss_pred EEEEEEccCCCEEEEEeccCCC-----CceEEEEeCCC-CceeeeeecccCcceeEEEEcC------------------C
Q 001535 541 CTTMLYSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDT------------------T 596 (1058)
Q Consensus 541 i~~i~~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~i~~~~~~~------------------~ 596 (1058)
...++|+|||.++++...--.- -+..++++-.. .++...+.+... ....+.|+| -
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEecccccccccccccc
Confidence 3567899999999876431111 22334444322 233334444333 222333322 1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 597 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+-.++.++ ...|++||.++-.++..... -|...++.++|++||..++..+.||...+..++..
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 22344444 45899999998888776643 34568999999999999999999998877766554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=184.61 Aligned_cols=636 Identities=12% Similarity=0.102 Sum_probs=373.1
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC-----
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 417 (1058)
|...-.+++|+|.| ++|-|+. ..|.+-|..+-+.+.. +.-|...|+.+.|+|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 44557789999999 6888864 5788889887776643 6668999999999873
Q ss_pred -------CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecC---CCeeEEEEEeCCCcEEEEe-cCCCe
Q 001535 418 -------GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRK 486 (1058)
Q Consensus 418 -------g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d---~~~~~l~s~~~d~~i~iwd-~~~~~ 486 (1058)
.-.||++...|.|.+||...+..+. .+..|..+|.++.|-+. .+. +|+.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 2267888888999999999876554 47789999999999763 333 566666678999999 99999
Q ss_pred eEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCC------CCceEEeeCC-CC--------------------
Q 001535 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVDYDAP-GH-------------------- 539 (1058)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~~~~~~~-~~-------------------- 539 (1058)
............++.+.|-. ...+..-+..|.+.+-+.-. ......+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd-~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFD-SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCC-cceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 88777666667777776653 34555555566666654321 1111111111 00
Q ss_pred -----cEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCC--CEEEEEeCCCcEEEE
Q 001535 540 -----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (1058)
Q Consensus 540 -----~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~vw 612 (1058)
....++|+|.-+.++.... ...+.++|++-..++.+..-..+ .+..+.+-|++ ..|++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 1123567786665554443 67799999998888887776655 45556776665 678999999999999
Q ss_pred ECCCCc----------------eeeEeccCCCCCCCceEEeeCC-CCEEEEEECCCcEEEEEccCCccccccccCC----
Q 001535 613 DMDNVN----------------ILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENP---- 671 (1058)
Q Consensus 613 d~~~~~----------------~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---- 671 (1058)
-.+... ....+...... .....+..|. ...++.--.+|.+.+|.+.++........+.
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 765422 11111111111 1122223343 3445555667888899988652111111100
Q ss_pred ------CcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccC--CCCCCCCCCCCcccCCCCCCCCccee
Q 001535 672 ------PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING--VDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1058)
Q Consensus 672 ------~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~vw~~ 743 (1058)
.....-+.-.-+.++-||.+- ++.. ..+-.+........+ +.......-..++.|...|+|.++|+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~----sGs~--~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHS----SGST--CVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCC----CCce--eeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 000000111112333333210 1111 111111111111111 11111112245788999999999999
Q ss_pred eeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeee
Q 001535 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1058)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 823 (1058)
.+..-...+. .|.+.|.++.|......+-.+.+. .. +........+.+.+..+|.....
T Consensus 455 st~~v~~~fs--------vht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 455 STNAVAASFS--------VHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred cchhhhhhhc--------ccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEccccccccc
Confidence 7643333222 288999999998877744433321 00 00111122445667777775543
Q ss_pred eccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEe-cCCC----------------
Q 001535 824 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH-PQDN---------------- 885 (1058)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~---------------- 885 (1058)
.-...+...+|+.+..|..|+|++..- +.-+.+||+++..+++.....-..|+.+.|+ | .-
T Consensus 514 R~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~ 592 (1062)
T KOG1912|consen 514 RGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSE 592 (1062)
T ss_pred ccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhh
Confidence 322224678899999999999999998 7789999998877766665555558899998 3 21
Q ss_pred cEEEEEECCCCEEEEEccC-------cee-eeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEec
Q 001535 886 NIIAIGTEDSTIHIYNVRV-------DEV-KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957 (1058)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~-------~~~-~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 957 (1058)
+.++..+ +..+++.+.. +.. ....+.....+..++|- +..|+.|..+|.+.+||+.............
T Consensus 593 n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~ 668 (1062)
T KOG1912|consen 593 NLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRGVRDSPD 668 (1062)
T ss_pred ceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccCccCCCC
Confidence 1222232 2223332211 111 11111111223345664 5689999999999999987654332111111
Q ss_pred CCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001535 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 958 ~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
+......+.+-|....+++-....+-+||.+....+..+.+.+. +..+..+.++.....++. .|.++++-.+.
T Consensus 669 ----~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~ds-sfrlldvdlc~~~~~~l~--~d~~~Rf~~m~ 741 (1062)
T KOG1912|consen 669 ----PRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDS-SFRLLDVDLCEKSPLVLP--NDNKERFRVMP 741 (1062)
T ss_pred ----chhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCc-ceEEEEEEecccCceecC--CCCceeEEecc
Confidence 10222334445554455666667799999999999888855432 556666666655544443 34478887776
Q ss_pred CCeEEEEEcCccc
Q 001535 1038 TLRLRCYIAPSTY 1050 (1058)
Q Consensus 1038 ~~~~~~~~~~~~~ 1050 (1058)
..........+.+
T Consensus 742 mks~~ll~~e~~l 754 (1062)
T KOG1912|consen 742 MKSPPLLPKEHAL 754 (1062)
T ss_pred ccCCccccCcccc
Confidence 6554444444444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-21 Score=214.06 Aligned_cols=304 Identities=14% Similarity=0.240 Sum_probs=225.5
Q ss_pred EEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCccc--ccccccCCCcceEEEEECCCCCE----E
Q 001535 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF--QASIFKDVPISVSRVAWSPDGNY----V 421 (1058)
Q Consensus 348 ~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~l~~spdg~~----l 421 (1058)
..++|||++..++|+|...+.+ |..-+ ...+..+|++....... ...--..-....+.++|++.|.. |
T Consensus 10 a~~awSp~~~~~laagt~aq~~---D~sfs---t~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlI 83 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQF---DASFS---TSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLI 83 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhcc---ccccc---cccccceeeecccCccccccccccccccccceeeeecccCCCcccee
Confidence 4578999998678887543321 21100 00112222222111111 11011123567889999998776 8
Q ss_pred EEEeCCCeEEEEEecC---CCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEe--ecccC
Q 001535 422 GVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEA 495 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~--~~h~~ 495 (1058)
|.|..||.|.+||... +.....+.+...|.+.|..+.|++.... ++++|+.||.|.||| .+-+.-... ....+
T Consensus 84 aGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~~~~~~~~~~ 162 (1049)
T KOG0307|consen 84 AGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPFTPGSQAPPS 162 (1049)
T ss_pred eccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCCCCCCCCCcc
Confidence 8899999999999875 4444455567789999999999998876 899999999999999 443333333 22457
Q ss_pred CeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCC--cEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC
Q 001535 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1058)
.|.+++|+.. ..+.|++++.+|++.|||++..+..+.+..+.. .+..+.|+|+...-+..+.+.|....|.+||++.
T Consensus 163 eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 163 EIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred cceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 7999999754 457899999999999999999887777666554 5789999998765444444566788999999886
Q ss_pred C-ceeeeeecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCC-EEEEEECC
Q 001535 574 G-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTAD 650 (1058)
Q Consensus 574 ~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d 650 (1058)
. ..++++++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|... .++.++-|
T Consensus 242 assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 242 ASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred cCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCcchhhhheec
Confidence 4 56778888887 78889999876 7888999999999999999999999876443 789999999655 88899999
Q ss_pred CcEEEEEccCCc
Q 001535 651 NGFKILANAIGL 662 (1058)
Q Consensus 651 g~i~iw~~~~~~ 662 (1058)
|.|.|+.+.+..
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999998763
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-19 Score=169.26 Aligned_cols=406 Identities=13% Similarity=0.127 Sum_probs=250.0
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEE
Q 001535 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1058)
Q Consensus 411 ~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~ 489 (1058)
-++|||+|+++|+++.- .+.|-|..+-+..+ +..--+.|..+.|..|... .+.....|+.|.+|+ ..-+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999766 67888887755443 2223456889999998875 566778899999999 66666677
Q ss_pred eecccCCeeEEeecccCCc-eEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEE
Q 001535 490 FEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1058)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1058)
+....+++.+++|+| || ..|.+...|-.|.+|.+.+..... +......+..++|+|||++.+.+++ .|-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeec-ccHHHHHHH
Confidence 777888999999977 45 677788889999999998755443 3444556789999999999998874 122222223
Q ss_pred EeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEE
Q 001535 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1058)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 646 (1058)
..-....+.+.+...+. ..+.+.|+|||+.+++-.. +-.|+.|.. .-.+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~--------------~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYER--------------GLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeee--------------ccceeEEEeccccceEEe
Confidence 22233345555555444 5667899999988765321 222222211 114788999999999999
Q ss_pred EECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCC
Q 001535 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (1058)
Q Consensus 647 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1058)
|+.|+.+|+.+--+ +++-++++--..-.+.+..-..........+..+...+.+
T Consensus 228 GsyD~~lrvlnh~t------------------------Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p-- 281 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFT------------------------WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP-- 281 (447)
T ss_pred eccchhhhhhceee------------------------eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC--
Confidence 99999999865322 1222221100000000000000000000000000000000
Q ss_pred CCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccc
Q 001535 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (1058)
Q Consensus 727 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~ 806 (1058)
.+-...+|...+ .+..+...| +++-.+
T Consensus 282 -------~~~~a~~~~~se--------------------~~YE~~~~p-------------v~~~~l------------- 308 (447)
T KOG4497|consen 282 -------TDLEAHIWEESE--------------------TIYEQQMTP-------------VKVHKL------------- 308 (447)
T ss_pred -------CccccCccccch--------------------hhhhhhhcc-------------eeeecc-------------
Confidence 000111111110 000000000 000000
Q ss_pred cccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeC---CcEEEEECCCceEEEEecCCCCCeeEEEEecC
Q 001535 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1058)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~ 883 (1058)
.+.+ ..+ +....+..++||+|..++|+-.| +.+.+||+...+....+. ...+|.+..|.|
T Consensus 309 -------kp~t------D~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP- 371 (447)
T KOG4497|consen 309 -------KPPT------DFP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP- 371 (447)
T ss_pred -------cCCC------CCC--CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-
Confidence 0000 111 14556788999999999999986 559999998877655554 466899999999
Q ss_pred CCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCc
Q 001535 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (1058)
Q Consensus 884 ~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 938 (1058)
+...|+.+.....+++|......++.. .+..-.|..+.|.-+|..++-.+.|..
T Consensus 372 ~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 372 GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 777777777778899999776555544 334468999999999999999999863
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=178.63 Aligned_cols=250 Identities=15% Similarity=0.159 Sum_probs=185.7
Q ss_pred CcccEEEEEEecCc-ceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEec
Q 001535 763 TSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1058)
|...|.++.|+|.. ..+++.+.||++++-|++...... ++... .....+..+.|+.
T Consensus 233 hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~-----------v~s~~------------~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 233 HSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE-----------VLSLD------------TDNIWFSSLDFSA 289 (498)
T ss_pred CCccccceEecCCChhheeeeccCceeeeeeecchhhHH-----------HhhcC------------ccceeeeeccccC
Confidence 78889999999854 578888999999998876532200 11110 1344567788888
Q ss_pred CCCEEEEEe-CCcEEEEECCCceE-EEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCce----eeeEecccC
Q 001535 842 NDSYVMSAT-GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE----VKSKLKGHQ 915 (1058)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~----~~~~~~~h~ 915 (1058)
+...++.+. -|.+.+||..+++. ...+.-|...|+.+++.|....+||+++.|++++|||++.-. .+.....|.
T Consensus 290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 888887777 47999999987654 556667888999999999888899999999999999998532 123344699
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECC----CCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEE
Q 001535 916 KRITGLAFSTSLNILVSSGADAQLCVWSID----TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYD 990 (1058)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d 990 (1058)
..|.+..|||++-.|++.+.|..|+|||.. .-+....+......+.. -.....+|.||..+++++ .-..|-|+|
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw-lT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW-LTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccc-ccchhheeCCCccEEEEeccCcceeEEc
Confidence 999999999998889999999999999994 33333333333222222 455678999999999998 467799999
Q ss_pred CCCCeeeeeeccCCCCCCCEEEE-EEccCCCEEEE-EeCCCcEEEEeCCC
Q 001535 991 ASKMERIRQWTPQDALSAPISCA-VYSCNSQLVFA-TFCDGNIGVFDADT 1038 (1058)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~v~~l-~~s~dg~~l~t-~~~dg~i~iw~~~~ 1038 (1058)
-+.++.+..+.... ...|.++ .|.|-+..+++ ++.-|.|+||--+.
T Consensus 449 ~~~~q~v~el~~P~--~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 449 GNGGQMVCELHDPE--SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred CCCCEEeeeccCcc--ccccccceeecccccceeccCCccceEEEEecCC
Confidence 99999888765543 4455554 78898774554 55678888886543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-16 Score=182.82 Aligned_cols=372 Identities=22% Similarity=0.393 Sum_probs=282.4
Q ss_pred ecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCC-eeEEeecccC-CeeEEeecccCCce-EEEEEee-CCeEE
Q 001535 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEA-PVYSICPHHKENIQ-FIFSTAI-DGKIK 521 (1058)
Q Consensus 447 l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~ 521 (1058)
+..|...+..+.|.+.+. .++.++.|+.+.+|+ ..+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 557999999999999999 788888999999999 5555 6777776443 77777774 44555 5555444 99999
Q ss_pred EEecCC-CCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCC-E
Q 001535 522 AWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-H 599 (1058)
Q Consensus 522 ~wd~~~-~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 599 (1058)
+|+... ......+..+...+..++|+|++..+++++. .++.+++|+..++..+..+.+|.. .+.+++|+|++. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 213 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGLL 213 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcceE
Confidence 999988 6777788889999999999999997777752 389999999999889999988776 899999999988 4
Q ss_pred EEEEeCCCcEEEEECCCCceee-EeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccC
Q 001535 600 FLAVGEDSQIKFWDMDNVNILT-STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1058)
Q Consensus 600 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (1058)
+++++.|+.|++||...+.... .+..+.. .. ...|++++..+++++.|+.+++|+.........
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------------ 278 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR------------ 278 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE------------
Confidence 4555899999999988777776 4554433 32 228999998999999999999999865421000
Q ss_pred cccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEec
Q 001535 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1058)
Q Consensus 679 ~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1058)
..
T Consensus 279 ---------------------------------------------------------------------------~~--- 280 (466)
T COG2319 279 ---------------------------------------------------------------------------TL--- 280 (466)
T ss_pred ---------------------------------------------------------------------------EE---
Confidence 00
Q ss_pred CCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEE
Q 001535 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1058)
Q Consensus 759 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1058)
..|...+.++.|.|++..+++++.|+.+.+|+..... ...... ...|...+..+.
T Consensus 281 --~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~-~~~~~~~~~~~~ 335 (466)
T COG2319 281 --SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK----------------------LLSSLT-LKGHEGPVSSLS 335 (466)
T ss_pred --ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc----------------------eEEEee-ecccCCceEEEE
Confidence 0156778888999988888888888888999654321 111001 111555788888
Q ss_pred EecCCCEEEEE-e-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEE-EECCCCEEEEEccCceeeeEecccC
Q 001535 839 LSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1058)
Q Consensus 839 ~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~las-g~~dg~v~iwd~~~~~~~~~~~~h~ 915 (1058)
+++++..++.+ . ++.+.+|+.............. .+..+.+++ + ..+.. +..++.+.+|+............+.
T Consensus 336 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
T COG2319 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412 (466)
T ss_pred ECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCC
Confidence 84343566555 3 7889999998877333333222 288999998 7 55554 8899999999999988777766554
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001535 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~ 946 (1058)
..+....+++++..+++++.++.+++|+..+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 7889999999999999999999999999988
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-19 Score=168.62 Aligned_cols=287 Identities=14% Similarity=0.181 Sum_probs=209.5
Q ss_pred EEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEEC-------CCCC
Q 001535 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-------PDGN 419 (1058)
Q Consensus 347 V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-------pdg~ 419 (1058)
.-.+.|||||.. +.+-+.|..+.+|++...-.-....... ..+.+..+-.-....|...+|- |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 456889999995 6666899999999985321100000000 0000111111124567777774 6788
Q ss_pred EEEEEeCCCeEEEEEecCCCcceeeeeeccccc---CeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeE--Ee--
Q 001535 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLF--NF-- 490 (1058)
Q Consensus 420 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~--~~-- 490 (1058)
++|+.+.+.-|++||.-+|+..... ....|.. .-.+++|+|||. .|++| ....|+++| ..|+-.. ..
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhh
Confidence 9999999999999999999754432 2223444 456899999999 56654 578999999 5665322 11
Q ss_pred ---ecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEE
Q 001535 491 ---EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1058)
Q Consensus 491 ---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~ 567 (1058)
.+..+-|.+++|+|. +...++.++...++-++.-........+-++++.|+.+.|.++|+.+.++++ .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 234677889999987 4468999999999999988888888888999999999999999999999986 688999
Q ss_pred EEeCCCC-ceeeeeecccCcceeE--EEEcCCCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCCCCceEEeeCCCCE
Q 001535 568 EWNESEG-TIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1058)
Q Consensus 568 ~wd~~~~-~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~ 643 (1058)
.||++.. .++..+..|....-.. ....|++++|++|+.||.|++||+.+ |.....+..+ ...++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~--sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY--SDTVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc--cccccceecCcccce
Confidence 9999864 5666666665422233 44568899999999999999999998 7766666544 347899999999888
Q ss_pred EEEEECC
Q 001535 644 LAVTTAD 650 (1058)
Q Consensus 644 l~~~~~d 650 (1058)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8888754
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=182.39 Aligned_cols=276 Identities=13% Similarity=0.213 Sum_probs=203.2
Q ss_pred CCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcc-eEEEeeccCeeEEeeeeccccCCCCcccccccc
Q 001535 732 DDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1058)
Q Consensus 732 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~ 810 (1058)
++....+++||.........+...+ ....+.++.|..... .++..+.|..+++|.-. |.
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t------~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-------g~------- 67 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQT------AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-------GK------- 67 (673)
T ss_pred eccCCceEEeecccccCccccccCC------CCCcceeeeccccceEEEeecCCceeEEEeccc-------CC-------
Confidence 3344789999988654444433322 223488888887774 33444558889988522 11
Q ss_pred eeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEE
Q 001535 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889 (1058)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 889 (1058)
.+........ ..+.-.|++......|+++|+ .+.|+|||++...+.+.+.+|...|+++.+.- ...+||
T Consensus 68 ------~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiA 137 (673)
T KOG4378|consen 68 ------TPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIA 137 (673)
T ss_pred ------CCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeE
Confidence 1111111111 223444555555558888888 89999999997777888999999999999998 788999
Q ss_pred EEECCCCEEEEEccCceeeeEecccCCC-eeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCce
Q 001535 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1058)
Q Consensus 890 sg~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1058)
+++..|.|.|-.+.++....+|....+. |.-|.|++..+ +|.+++.+|.|.+||+...... .+....|. .+..
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~~~~Hs-AP~~ 212 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHASEAHS-APCR 212 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cchhhhcc-CCcC
Confidence 9999999999999999888888755454 45889999876 5567899999999999985533 23333333 8889
Q ss_pred EEEEcCCCCEEEE--EECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-eEEEE
Q 001535 968 RVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL-RLRCY 1044 (1058)
Q Consensus 968 ~l~~s~d~~~l~~--~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~-~~~~~ 1044 (1058)
.++|||.+..|++ |-|.+|.+||+........+.. ..+.+.++|+++|.+|++|+..|.|..||+... .++..
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 9999998877776 5799999999997776666554 578999999999999999999999999999754 34544
Q ss_pred Ec
Q 001535 1045 IA 1046 (1058)
Q Consensus 1045 ~~ 1046 (1058)
+.
T Consensus 289 ~s 290 (673)
T KOG4378|consen 289 RS 290 (673)
T ss_pred ee
Confidence 44
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=168.25 Aligned_cols=290 Identities=16% Similarity=0.247 Sum_probs=209.3
Q ss_pred cCCCcEEEEEeec----CCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC
Q 001535 342 HQGSTVISMDFHP----SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1058)
Q Consensus 342 ~h~~~V~~v~~sp----~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1058)
.|+.+|..++|.+ +...++|+.+ ...+.||+......+. .+|...-..|......++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEec
Confidence 3888999999985 2222566654 4578888875432111 0122223357888889999765
Q ss_pred ----CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEe--
Q 001535 418 ----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1058)
Q Consensus 418 ----g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~-- 490 (1058)
.-+||.|+.-|.|+|.|+.+++..+ .+.+|...|+.+.|.|+..+ +++++|.|.+|++|| .+..++..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3478999999999999999988766 57899999999999999877 899999999999999 999998876
Q ss_pred -ecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE----------------------------EeeCCCCcE
Q 001535 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------------------------DYDAPGHWC 541 (1058)
Q Consensus 491 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------------------------~~~~~~~~i 541 (1058)
.+|.+.|.++.|+. +|.+|++++.|..+++|++...+... +...|...|
T Consensus 177 ~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999966 66799999999999999997322111 001122233
Q ss_pred EEEEEccCCCEEEEEeccCCCCceEEEEeCC-CCce-------------eeeeecccCcceeEE--EEcCCCCEEEEEeC
Q 001535 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI-------------KRTYAGFRKKSNGVV--QFDTTQNHFLAVGE 605 (1058)
Q Consensus 542 ~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-------------~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~ 605 (1058)
-|+.|- |+++++-+ .++.|..|... -++. ..++..... .+.-+ +|.+-++.|+.|..
T Consensus 255 DCvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccC
Confidence 333332 45677655 47799999872 1111 122222222 33333 55667789999999
Q ss_pred CCcEEEEECCCCcee--eEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEcc
Q 001535 606 DSQIKFWDMDNVNIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 606 dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
.|.|++||++..++. .++........|...+|+.||..|+...+|++|.-||..
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999887652 233333334578999999999999999999999999853
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=171.25 Aligned_cols=268 Identities=16% Similarity=0.196 Sum_probs=190.0
Q ss_pred CCcceEEeecCCCcEEEEEeecCCC-eEEEEEeccceEEEEEccCCCccc-cccceeecccccCcccccccccCCCcceE
Q 001535 333 LPRTVAVSLHQGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLV-SKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1058)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~~sp~g~-~lla~gs~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1058)
.|..-....+|.+.|+.+.-++-|+ .+.|+=+..|.|.||++...-... ......-+ ....+...+.+|.+.=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 4556667778999999999888753 356666888999999985421111 00000000 01112245789999999
Q ss_pred EEEECCC-CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCC--e
Q 001535 411 RVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--K 486 (1058)
Q Consensus 411 ~l~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~--~ 486 (1058)
.++|||- -..|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. +|+|||.||+|+||| +.+. .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 9999992 335788888888999999987654444457789999999999998777 899999999999999 6662 2
Q ss_pred eEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCC---ceEEeeCCCCcEEEEEEccCCC-EEEEEeccCCC
Q 001535 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDG 562 (1058)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~~~~~ 562 (1058)
....+.|.+.|+.|.|+.. -.+|++|+.||++++||++..+ ....+..|..+|+++.|+|... .+++++ .
T Consensus 295 ~~~~kAh~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg----~ 368 (440)
T KOG0302|consen 295 AVSTKAHNSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG----E 368 (440)
T ss_pred eeEeeccCCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----C
Confidence 2334889999999999654 3599999999999999998644 4568889999999999999654 444444 4
Q ss_pred CceEEEEeCCCCce----------------eeeeecc-cCcceeEEEEcCCC-CEEEEEeCCCcEEEE
Q 001535 563 DSFLVEWNESEGTI----------------KRTYAGF-RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFW 612 (1058)
Q Consensus 563 ~~~i~~wd~~~~~~----------------~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~vw 612 (1058)
|..|.+||+....- .+.+--| .+..+.-+.|+++- .++++.+.|| +.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 89999999863211 0111122 12245567788754 4666666666 3344
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-16 Score=178.66 Aligned_cols=370 Identities=22% Similarity=0.420 Sum_probs=274.5
Q ss_pred EeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc-eeeeeecccCcceeEEEE-cCCCC-EEEEEeC-CCc
Q 001535 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQF-DTTQN-HFLAVGE-DSQ 608 (1058)
Q Consensus 533 ~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~-~~~~~-~l~~~~~-dg~ 608 (1058)
....+...+..+.+.+.+..++.++ .++.+.+|+...+. ....+.......+..+.+ .+++. .++..+. |+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGS----SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEec----CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence 3455677899999999999999886 38899999999887 666666643334555555 77777 4555444 999
Q ss_pred EEEEECCC-CceeeEeccCCCCCCCceEEeeCCCCEEEEEEC-CCcEEEEEccCCccccccccCCCcccccCcccceeee
Q 001535 609 IKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1058)
Q Consensus 609 i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 686 (1058)
+.+|+... ......+..+. ..|..++|+|++..+++++. ++.+++|+...+ .....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------- 193 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHS--ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLST------------------- 193 (466)
T ss_pred EEEEEecCCCeEEEEEecCc--ccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEe-------------------
Confidence 99999988 66666666543 46889999999998888885 999999998652 00000
Q ss_pred eccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCccc
Q 001535 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1058)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1058)
+ .+|...
T Consensus 194 ----------------------------------------------------------------------~---~~~~~~ 200 (466)
T COG2319 194 ----------------------------------------------------------------------L---AGHTDP 200 (466)
T ss_pred ----------------------------------------------------------------------e---ccCCCc
Confidence 0 116678
Q ss_pred EEEEEEecCcc-eEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCE
Q 001535 767 VVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1058)
Q Consensus 767 i~~l~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1058)
|.+++++|++. .+++++.|+.+++|+.. .+......+.+ |.... ...|++++.+
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~----------------------~~~~~~~~~~~--~~~~~-~~~~~~~~~~ 255 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLS----------------------TGKLLRSTLSG--HSDSV-VSSFSPDGSL 255 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECC----------------------CCcEEeeecCC--CCcce-eEeECCCCCE
Confidence 89999999998 44444789999999643 12222212222 45554 3389999988
Q ss_pred EEEEe-CCcEEEEECCCceE-EEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEec--ccCCCeeEE
Q 001535 846 VMSAT-GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK--GHQKRITGL 921 (1058)
Q Consensus 846 la~~~-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l 921 (1058)
+++++ ++.+++|+...... ...+.+|...+.++.|+| ++..+++++.|+.+.+|+..+........ .|...+..+
T Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
T COG2319 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334 (466)
T ss_pred EEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEE
Confidence 88777 89999999986664 445567889999999999 78888889999999999998887666665 888889999
Q ss_pred EEcCCCCEEEEE-eCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEE--EECCeEEEEECCCCeeee
Q 001535 922 AFSTSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYDASKMERIR 998 (1058)
Q Consensus 922 ~~s~d~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~--~~d~~v~v~d~~~~~~~~ 998 (1058)
.|.+++..++.+ ..|+.+.+|++.... ...... .. ..+..+.+++ ...... ..++.+.+|+........
T Consensus 335 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~---~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
T COG2319 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLE---GH--SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLR 406 (466)
T ss_pred EECCCCCEEEEeecCCCcEEeeecCCCc--eeEEec---CC--ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeee
Confidence 994333566655 688999999999876 111111 11 2278899999 544443 368899999999888877
Q ss_pred eeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001535 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 999 ~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
..... ...+....+++++..+++++.++.+++|+..+
T Consensus 407 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 407 NLDGH---TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eccCC---CCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 76553 16899999999999999999999999999988
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=175.44 Aligned_cols=264 Identities=11% Similarity=0.123 Sum_probs=188.7
Q ss_pred CcEEEEEeecC-------CCeEEEEEeccceEEEEEccCCCccccccceeecccccC---cccccccccCCCcceEEEEE
Q 001535 345 STVISMDFHPS-------HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS---LPFQASIFKDVPISVSRVAW 414 (1058)
Q Consensus 345 ~~V~~v~~sp~-------g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~l~~ 414 (1058)
....|++|... |+ ++|.|+.|..|.|||+.--..+. ..+.+-...... .........+|+..|.+++|
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~-P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL-PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc-cceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 34567776432 45 79999999999999986322211 000000000000 00011235589999999999
Q ss_pred CCC-CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeec
Q 001535 415 SPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1058)
Q Consensus 415 spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~ 492 (1058)
+.+ ...||+||.|.+|++||+.+|++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.| +.-......-.
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE
Confidence 986 5578999999999999999999876 57789999999999998776 899999999999999 53322222222
Q ss_pred ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCC-CceEEeeCCCCcEEEEEEccCCCEE-EEEeccCCCCceEEEEe
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWN 570 (1058)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~i~~s~~~~~l-~~~~~~~~~~~~i~~wd 570 (1058)
..+.|-.++|.+... ..++++..||+|+-+|++.. +...++..|..+|.++++++....+ ++++ .++.+.+|+
T Consensus 328 ~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s----~d~~Vklw~ 402 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS----TDKVVKLWK 402 (463)
T ss_pred eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc----ccceEEEEe
Confidence 456789999987644 67888899999999999987 6778999999999999999876654 4544 599999999
Q ss_pred CCCCce--eeeeecccCcceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcee
Q 001535 571 ESEGTI--KRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL 620 (1058)
Q Consensus 571 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~ 620 (1058)
+..... +..-.-.-+ ...|.++.|+-. .++.|+..+.++|||+.+...+
T Consensus 403 ~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 865433 222111111 355667777654 5566788888999999876654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=168.27 Aligned_cols=247 Identities=19% Similarity=0.218 Sum_probs=191.1
Q ss_pred ccccccCCCcceEEEEECCCC--CEEEEEeCCCeEEEEEecCC-------------CcceeeeeecccccCeEEEEeecC
Q 001535 398 QASIFKDVPISVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGS-------------NDLRQHSQIDAHVGAVNDLAFAYP 462 (1058)
Q Consensus 398 ~~~~~~~h~~~V~~l~~spdg--~~las~~~dg~i~iwd~~~~-------------~~~~~~~~l~~h~~~v~~l~~s~d 462 (1058)
......+|.+.|+.+.-++-| .+.|+-+..|.|.|||+... ...+.++++.+|.+.=+.++|||-
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 334466788888888888854 45666678899999997421 223456678899999999999994
Q ss_pred CCeeEEEEEeCCCcEEEEe-cCCCee---EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCc--eEEeeC
Q 001535 463 NKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDA 536 (1058)
Q Consensus 463 ~~~~~l~s~~~d~~i~iwd-~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~ 536 (1058)
... .++||.--+.|++|. .+|.-. ..|.+|+..|-.++|+|..+ ..|++|+.||+|+|||++.+.. ......
T Consensus 223 ~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 223 KTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred ccc-ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeec
Confidence 332 588998889999999 667543 45778999999999999876 5999999999999999998733 334577
Q ss_pred CCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC---CceeeeeecccCcceeEEEEcCCC-CEEEEEeCCCcEEEE
Q 001535 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFW 612 (1058)
Q Consensus 537 ~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vw 612 (1058)
|...|+.+.|+.+-.+|++|+ .+|.+.+||++. ++++.+|+-|.. +|+++.|+|.. ..|++++.|.+|.+|
T Consensus 301 h~sDVNVISWnr~~~lLasG~----DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 301 HNSDVNVISWNRREPLLASGG----DDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred cCCceeeEEccCCcceeeecC----CCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEE
Confidence 888999999999988888887 499999999985 578889998887 99999999965 567778899999999
Q ss_pred ECCCCce----------------eeEeccCCCCCCCceEEeeCCC-CEEEEEECCC
Q 001535 613 DMDNVNI----------------LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADN 651 (1058)
Q Consensus 613 d~~~~~~----------------~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg 651 (1058)
|+.-..- .+.+-.|.+...+..+.|++.- .++++.+.||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 9853211 1122233344568889999853 4666666665
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=168.80 Aligned_cols=249 Identities=16% Similarity=0.210 Sum_probs=188.1
Q ss_pred ceEEEEECC-----CCCEEEEE---eCCCeEEEEEe-cCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEE
Q 001535 408 SVSRVAWSP-----DGNYVGVA---FTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1058)
Q Consensus 408 ~V~~l~~sp-----dg~~las~---~~dg~i~iwd~-~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 478 (1058)
.|+.++|.. +.++||.. +..|...|.-+ ++|+.-.....+.||+++|.+++|+|-+.. .++|||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 444455533 45666643 22333333333 344444444457799999999999998877 899999999999
Q ss_pred EEe-cCC-------CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCC
Q 001535 479 VWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1058)
Q Consensus 479 iwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~ 550 (1058)
||. .++ +++..+.+|...|.-++|+|... +.|++++.|.+|.+|++.++.....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 443 34678899999999999999865 689999999999999999999998887 88899999999999
Q ss_pred CEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeEeccCC
Q 001535 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEG 627 (1058)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~ 627 (1058)
.++++.+ .|..|++||.++++.+..-.+|.+..-..+.|-.++..+-+|- .+.++-+||..+-+.-..+..-.
T Consensus 186 s~l~Ttc----kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 186 SLLCTTC----KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ceeeeec----ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 9999998 4999999999999999998888876666677888888444432 67889999977644322222112
Q ss_pred CCCCCceEEeeCCCCEEEE-EECCCcEEEEEccCCcc
Q 001535 628 GLPNLPRLRFSKEGNLLAV-TTADNGFKILANAIGLR 663 (1058)
Q Consensus 628 ~~~~v~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~ 663 (1058)
....|.---|.+|..++.. |-.|+.||.|.+.+...
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 2334556667888777655 45699999999987643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=170.94 Aligned_cols=229 Identities=15% Similarity=0.137 Sum_probs=169.5
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeE-EEEe-----ecCCCeeEEEEEeCCCcE
Q 001535 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN-DLAF-----AYPNKLLCVVTCGDDKLI 477 (1058)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~-~l~~-----s~d~~~~~l~s~~~d~~i 477 (1058)
.|...|.|+.|+.+...+.+++++..+.-||+.+.+ ..... + ...-|. ++.. ...+..-.|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~-~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAK-L--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhh-C--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 477788899999988877776655545555554432 22111 1 111111 1111 111111268888999999
Q ss_pred EEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEe
Q 001535 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 478 ~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 557 (1058)
.+-+..|+.......|.+.+.+-.|++ ||.-|++++.||.|++|.- ++..+.++.....+|.|++|.|+.+.++.+.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999999999999999999999999976 6677999999999999973 4444445555677899999999999888875
Q ss_pred ccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEe
Q 001535 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1058)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1058)
.+.+.+=.+.....+-..+.|.+ .|.++.|++..+.+++||+|-..+|||.. |..+..-..+.+ +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 56777777777777777888887 89999999999999999999999999974 555555555544 8999999
Q ss_pred eCCCCEEEEEEC
Q 001535 638 SKEGNLLAVTTA 649 (1058)
Q Consensus 638 s~~~~~l~~~~~ 649 (1058)
+|+ ..++.++.
T Consensus 236 npd-~~~~v~S~ 246 (737)
T KOG1524|consen 236 NPE-KDYLLWSY 246 (737)
T ss_pred ccc-cceeeeee
Confidence 999 66666654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-18 Score=168.99 Aligned_cols=234 Identities=13% Similarity=0.214 Sum_probs=183.8
Q ss_pred ccccCCCcceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCcc----eeeeeecccccCeEEEEeecCCCeeEEEEEeCC
Q 001535 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1058)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d 474 (1058)
..+.||+++|..++|+| +...||+||.|.+|.||++..+... .....|.+|...|-.++|+|.... .|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 45889999999999999 7788999999999999998755332 234468899999999999998877 78999999
Q ss_pred CcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCC-cEEEEEEccCCCE
Q 001535 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSR 552 (1058)
Q Consensus 475 ~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~~i~~s~~~~~ 552 (1058)
.+|.+|| .+|..+.++. |.+.|++++|+. ||.++++++.|+.||+||.++++....-..|.+ .-..+.|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999 9999888888 999999999966 779999999999999999999888877655544 556677888888
Q ss_pred EEEEeccCCCCceEEEEeCCCCce---eeeeecccCcceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCce-eeEeccCC
Q 001535 553 LFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEG 627 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~-~~~~~~~~ 627 (1058)
+++.+.++-.+..+-+||..+-+. ..++... ..|..-.+.++.+.++.+| .|+.|+.|.+....+ +..+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 777777777789999999776543 2333332 2355556788888887766 899999999977653 33333333
Q ss_pred CCCCCceEEeeCC
Q 001535 628 GLPNLPRLRFSKE 640 (1058)
Q Consensus 628 ~~~~v~~v~~s~~ 640 (1058)
...+-..+.|-|.
T Consensus 308 S~epQRG~g~mPK 320 (472)
T KOG0303|consen 308 SKEPQRGMGFMPK 320 (472)
T ss_pred cCCcccccccccc
Confidence 3334566677664
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-18 Score=168.84 Aligned_cols=264 Identities=17% Similarity=0.260 Sum_probs=193.2
Q ss_pred cccEEEEEEecCcc-eEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecC
Q 001535 764 SSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1058)
Q Consensus 764 ~~~i~~l~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1058)
...+.++.|.+++. .+++++.|..|++|.+........+.. ......+.. |...|+++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~--------------V~y~s~Ls~--H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK--------------VEYLSSLSR--HTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCcee--------------EEEeecccC--CcceeEEEEEcCC
Confidence 35788899998877 899999999999999876532111100 011112344 9999999999999
Q ss_pred CCEEEEEe-CCcEEEEECC--------C--------ceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCc
Q 001535 843 DSYVMSAT-GGKISLFNMM--------T--------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1058)
Q Consensus 843 g~~la~~~-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~ 905 (1058)
|.+||+|+ +|+|.+|-.. + ......+.+|...|..++|+| ++.++++|+.|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999999 6889999765 2 234567788999999999999 9999999999999999999999
Q ss_pred eeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEE---ecCCCCC--------------CCCceE
Q 001535 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI---HIPAGKT--------------PTGDTR 968 (1058)
Q Consensus 906 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~~~~~--------------~~~v~~ 968 (1058)
.....+.+|...|..++|.|-++++++-+.|...+.+.+........... ....+.. ..-...
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 99999999999999999999999999999998777776655333222210 0000000 012234
Q ss_pred EEEcCCCCEEEE--------------------------------------------------------------------
Q 001535 969 VQFNADQVRMLV-------------------------------------------------------------------- 980 (1058)
Q Consensus 969 l~~s~d~~~l~~-------------------------------------------------------------------- 980 (1058)
++|+|||.+|++
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 556666655544
Q ss_pred --EECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Q 001535 981 --VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1058)
Q Consensus 981 --~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~~~~~~ 1046 (1058)
+..+.|++||..+..++...... |...++.++|++||..|+..+.||...+-.++..++-+.+.
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~ni--hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg~~~~ 381 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDNI--HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELGIRLK 381 (434)
T ss_pred EEeecceEEEeccccccceEEEeee--eeeeecceeecCCCcEEEEeccCCceEEEEEcchhccceec
Confidence 33344455555554444444433 37889999999999999999999998888887776654443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-18 Score=162.50 Aligned_cols=336 Identities=15% Similarity=0.219 Sum_probs=227.2
Q ss_pred ccccCCCcceEEEEECC-----CCCEEEEEeCCCeEEEEEecCCCcceeeeeec--ccccCeEEEEeecCCC--eeEEEE
Q 001535 400 SIFKDVPISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNK--LLCVVT 470 (1058)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-----dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~d~~--~~~l~s 470 (1058)
++..+|..+|..++|++ .-..+|+++.+ .+.+|.......++.++... .|......++|+-|.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34667899999999985 23456666544 68999887654444333332 4778889999987633 237888
Q ss_pred EeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEee---CCCCcEEEEEE
Q 001535 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLY 546 (1058)
Q Consensus 471 ~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~i~~ 546 (1058)
|+.-|.|+|.| .++++...+.+|...|+.+.++|.. .+++++++.|..||+|++++..+...+- +|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 89999999999 9999999999999999999999874 4799999999999999999999988764 56679999999
Q ss_pred ccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccC
Q 001535 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1058)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 626 (1058)
+++|.+++++|. |..|.+|++...+....+.. +..|+|++...-.-. -...+.+.. + ..
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~-------s~~~~~~~t~~pfpt--~~~~fp~fs------t--~d 248 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLEL-------SITYSPNKTTRPFPT--PKTHFPDFS------T--TD 248 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhhh-------hcccCCCCccCcCCc--ccccccccc------c--cc
Confidence 999999999996 99999999986554333322 134555543211000 011122211 1 12
Q ss_pred CCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeecc
Q 001535 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1058)
Q Consensus 627 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1058)
-|...|-|+.|- |.++++-+-++.|..|....-.+.+........ .
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es----------------~---------------- 294 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPES----------------A---------------- 294 (385)
T ss_pred cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcc----------------c----------------
Confidence 344578888885 468888888999999986321111111100000 0
Q ss_pred CCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEE--EEEEecCcceEEEeec
Q 001535 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV--RLLYTNSAVGLLALGS 784 (1058)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~s~~~~~l~~~~~ 784 (1058)
...+..+.. ....|+ ..+|.|-++.|+.+..
T Consensus 295 ------------------------------------------~Ti~~~~~~-----~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 295 ------------------------------------------TTILGEFDY-----PMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred ------------------------------------------eeeeeEecc-----CccceEEEEEeecHHHHHHhhccC
Confidence 000001111 223333 4566677889999999
Q ss_pred cCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECC
Q 001535 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM 860 (1058)
Q Consensus 785 dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~ 860 (1058)
.|.+.+||++..+... ...+. .......|...+||.||..|+... |++|.-||..
T Consensus 328 ~g~v~vwdL~~~ep~~-----------------~ttl~----~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPK-----------------CTTLT----HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCcc-----------------CceEE----eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999987654311 11111 111456789999999999887666 8999999853
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=164.82 Aligned_cols=284 Identities=11% Similarity=0.123 Sum_probs=196.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------eeeEeccCCCCCCCceEEee-------CCCCEEEEEE
Q 001535 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------------ILTSTDAEGGLPNLPRLRFS-------KEGNLLAVTT 648 (1058)
Q Consensus 588 i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~v~~v~~s-------~~~~~l~~~~ 648 (1058)
...+.|+|||..|++-+.|..+.+|++...- ....+....+ ..|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg-~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEG-ETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccC-CEEEEEEeeeccccCCCccceeeecc
Confidence 4457899999999999999999999985311 1111111111 145555553 6788999999
Q ss_pred CCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCC
Q 001535 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (1058)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1058)
.+.-|++||.-++.. ...........--....+++|+|||..|.++.
T Consensus 131 r~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-------------------------------- 177 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-------------------------------- 177 (406)
T ss_pred ccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeecc--------------------------------
Confidence 999999999988832 22222111111112345688999988874443
Q ss_pred cccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcc-eEEEeeccCeeEEeeeeccccCCCCccccc
Q 001535 729 RTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATAS 807 (1058)
Q Consensus 729 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~ 807 (1058)
...|+++++...............+..+..+-|.+++|+|-.. .++.++-...+-||.-.
T Consensus 178 ------krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~------------- 238 (406)
T KOG2919|consen 178 ------KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD------------- 238 (406)
T ss_pred ------cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-------------
Confidence 3778888874322222222222222344677899999999766 56666666677776522
Q ss_pred ccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEECCC-ceEEEEecCCCC-CeeE--EEEe
Q 001535 808 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTTFMSPPP-ASTF--LAFH 881 (1058)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~~~~~~~-~i~~--l~~s 881 (1058)
.+.++. .+.+ |.+.|+.++|.+||+.|.+|+ +.+|..||++. ..++..+..|.. .-.. ....
T Consensus 239 ---------~~~pl~-llgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld 306 (406)
T KOG2919|consen 239 ---------GRRPLQ-LLGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLD 306 (406)
T ss_pred ---------CCCcee-eecc--cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecC
Confidence 222222 2334 999999999999999999998 78899999975 455666666654 3333 4445
Q ss_pred cCCCcEEEEEECCCCEEEEEccC-ceeeeEecccCCCeeEEEEcCCCCEEEEEeCCC
Q 001535 882 PQDNNIIAIGTEDSTIHIYNVRV-DEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1058)
Q Consensus 882 ~~~~~~lasg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg 937 (1058)
| ++++||+|+.||.|++||+++ +..+..+..|+..|+.++++|--.++++++...
T Consensus 307 ~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 307 P-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred C-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 7 899999999999999999998 777888888999999999999988999887654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=168.58 Aligned_cols=272 Identities=16% Similarity=0.198 Sum_probs=188.2
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
.|..-|+||.|+.+.. ++.++ .|..+.+|.-.+...... .++-+.. ++. ..|-++- +..=-.....+
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~--~~~p~df-----~pt---~~h~~~r-s~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEV--AKLPDDF-----VPT---DMHLGGR-SSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhh--hhCCccc-----CCc---ccccccc-ccCCCCCcceE
Confidence 4677789999999987 55554 566666665433322211 0000000 000 0010000 00000124578
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeecccCCeeEEe
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~ 501 (1058)
+.++.||.+.|.+-.. +..+ .+..|.+.|.+-.|+|||. -|+++++||.|++|..+|..-.++.....+|+|++
T Consensus 79 ~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 8889999988876433 2222 4779999999999999999 79999999999999999988888877888999999
Q ss_pred ecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeee
Q 001535 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1058)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1058)
|.|+.+ +.+++.+ +.+.+=-+...........|.+-|.++.|++..+.+++++ +|-..++||.. |..+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG----ED~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG----EDFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecC----CceeEEeeccc-CcccccCC
Confidence 988654 3444443 4555555666677788899999999999999999999998 58999999964 45555545
Q ss_pred cccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEE
Q 001535 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1058)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 656 (1058)
.|.- +|++++|.|+ +.++.++.+ +++ +.. ...+.|..++||+||..+++|+..|.+.+=
T Consensus 225 ~~ey-~ITSva~npd-~~~~v~S~n-t~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 225 AEEY-AITSVAFNPE-KDYLLWSYN-TAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hhcc-ceeeeeeccc-cceeeeeee-eee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 5554 8999999999 555555533 333 211 224468999999999999999999887653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=194.47 Aligned_cols=262 Identities=12% Similarity=0.157 Sum_probs=201.8
Q ss_pred eEEeecCCCcEEEEEeecCCCe---EEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEE
Q 001535 337 VAVSLHQGSTVISMDFHPSHQT---LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1058)
Q Consensus 337 ~~~~~~h~~~V~~v~~sp~g~~---lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1058)
....+.-...-..++|.+.|.. ++|.|..||.|.+||...- +....+ . .......|++.|..+.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~----------~-~la~~~~h~G~V~gLD 123 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASE----------E-VLATKSKHTGPVLGLD 123 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcch----------H-HHhhhcccCCceeeee
Confidence 3444556778899999998876 5899999999999998652 000000 0 0123667999999999
Q ss_pred ECCCCC-EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEee
Q 001535 414 WSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1058)
Q Consensus 414 ~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~ 491 (1058)
|++.+. .||+|+.||.|.|||+..-+...... -....+.|.+++|+..-.+ .|++++.+|.+.||| ...+++..+.
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls 201 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLS 201 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccc
Confidence 999755 99999999999999998754433211 1124567999999988776 799999999999999 6667777776
Q ss_pred cccC--CeeEEeecccCCceEEEEEeeCC--eEEEEecCCCCce-EEeeCCCCcEEEEEEccCC-CEEEEEeccCCCCce
Q 001535 492 GHEA--PVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSR-VDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSF 565 (1058)
Q Consensus 492 ~h~~--~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~-~~~~~~~~~i~~i~~s~~~-~~l~~~~~~~~~~~~ 565 (1058)
.+.. .+..++|+|+...+++++...|+ .|.+||++..... .++..|...|.++.|++.+ .++++++ .|+.
T Consensus 202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg----kD~~ 277 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG----KDNR 277 (1049)
T ss_pred cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc----CCCC
Confidence 6654 46789999986644444444443 6999999876544 4667899999999999976 6777777 5999
Q ss_pred EEEEeCCCCceeeeeecccCcceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001535 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN 618 (1058)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 618 (1058)
|.+|+.++++.+..+....+ .+.-+.|+|... .+++++-||.|-|+.+....
T Consensus 278 ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999999988554 788899999775 77778899999999987654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-17 Score=173.05 Aligned_cols=551 Identities=12% Similarity=0.145 Sum_probs=317.7
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCC----------CeeEEEEEeCCCc
Q 001535 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN----------KLLCVVTCGDDKL 476 (1058)
Q Consensus 407 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~----------~~~~l~s~~~d~~ 476 (1058)
..-.++.|+|.| +||.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|-. ..++++++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346678999877 67777654 68888888766555 677899999999998742 3457888888999
Q ss_pred EEEEe-cCCCeeEEeecccCCeeEEeecccCCc--eEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEcc-CCCE
Q 001535 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSR 552 (1058)
Q Consensus 477 i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~-~~~~ 552 (1058)
|.+|| ..+..+..+..|.+++..++|.+..+. ..|+......++.+|+.++++..+.+........++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999 888888999999999999999876554 4677888889999999999999998888777888899988 4555
Q ss_pred EEEEeccCCCCceEEEEeCCC-------CceeeeeecccC----------------cc--------eeEEEEcCCCCEEE
Q 001535 553 LFSCGTSKDGDSFLVEWNESE-------GTIKRTYAGFRK----------------KS--------NGVVQFDTTQNHFL 601 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~-------~~~~~~~~~~~~----------------~~--------i~~~~~~~~~~~l~ 601 (1058)
+...+. .|.+.+-+.-. ++..+.-..|.+ .. ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 554442 44444443211 122211111111 00 11256788877777
Q ss_pred EEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCC--CCEEEEEECCCcEEEEEccCCccccccccCCCcccccCc
Q 001535 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1058)
Q Consensus 602 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (1058)
...-...+.++|++-..++.......+ .+.-+.+-|+ ...|.+.-.||.+.+|-.+......+....
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~--------- 315 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA--------- 315 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch---------
Confidence 777788899999999888888876655 3455666664 457899999999999976543222211100
Q ss_pred ccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCC-CCCcccCCCCCCCCcceeeeeecCCceEEEEec
Q 001535 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM-DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1058)
Q Consensus 680 i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1058)
.++++ ..++.+.-.+......+.+. ..|. ...++.--++|...+|++..+..
T Consensus 316 --~l~~d------------l~~Q~~~vr~m~~~rp~~~~---~cPs~~sa~avl~s~g~~~~w~l~~~ri---------- 368 (1062)
T KOG1912|consen 316 --SLSMD------------LGEQVHVVRPMEEFRPVIGA---SCPSTPSALAVLYSSGDSTFWQLSNGRI---------- 368 (1062)
T ss_pred --hhccc------------cccceEEEeechhcccceee---cCCCChhhhhhhhhcchhHHHhhhcCCc----------
Confidence 00000 00000000000000000000 0111 12222333446666666542100
Q ss_pred CCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEE
Q 001535 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1058)
Q Consensus 759 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1058)
|... ...+++.-. -.-..+-.+.+........+.+|......+....++.. ..+-..
T Consensus 369 ----~~~~--~s~~iel~~--pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p---------------~~t~~~ 425 (1062)
T KOG1912|consen 369 ----HLDY--RSSSIELVL--PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMP---------------ELTKVE 425 (1062)
T ss_pred ----Cccc--ccccccccc--cccccCceeehhhccccchhhcCCCCCCceeeecccCc---------------ccceee
Confidence 1111 000111000 00000111111111111112222111111111011000 001111
Q ss_pred EecCC-------CEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEE---------CCCCEEEEE
Q 001535 839 LSKND-------SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT---------EDSTIHIYN 901 (1058)
Q Consensus 839 ~s~dg-------~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~---------~dg~v~iwd 901 (1058)
-.|.| .++|.|. .|+|.++|+.++...+.+..|.+.|.++.|-. +.+++-.+. --+.+.+-|
T Consensus 426 ~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~vtd 504 (1062)
T KOG1912|consen 426 NDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVVTD 504 (1062)
T ss_pred cCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceeeeEEEEE
Confidence 11222 2677887 79999999999999999999999999999986 554443222 223577888
Q ss_pred ccCceee--eEec-ccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEc-CCCCE
Q 001535 902 VRVDEVK--SKLK-GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN-ADQVR 977 (1058)
Q Consensus 902 ~~~~~~~--~~~~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~d~~~ 977 (1058)
+++|-.. +-++ ....+|..+..|.-|+||+..-.|.-+.+||+++..+........ ..++.+.|+ |.-.-
T Consensus 505 LrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~------P~it~leWsl~~~~s 578 (1062)
T KOG1912|consen 505 LRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL------PLITVLEWSLPKHPS 578 (1062)
T ss_pred cccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC------CcEEEEeecccCCCC
Confidence 8888432 2222 345789999999999999999999999999998866655443332 336778887 32211
Q ss_pred EEE---------------EECCeEEEEECCC-------CeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001535 978 MLV---------------VHETQLAIYDASK-------MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1058)
Q Consensus 978 l~~---------------~~d~~v~v~d~~~-------~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~ 1035 (1058)
+.. .......++.+.. +..+..-..+. ...+..|+|- +..|+.|..+|.+.+||
T Consensus 579 i~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esf--afal~~mAwk--~d~lv~GD~~GNl~~WD 654 (1062)
T KOG1912|consen 579 IKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESF--AFALCAMAWK--DDILVVGDVEGNLVVWD 654 (1062)
T ss_pred cccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHH--HHHHHhhhcc--CCeeEeecccCceeEEe
Confidence 111 1111222222111 11100000000 1223345553 56899999999999999
Q ss_pred CCC
Q 001535 1036 ADT 1038 (1058)
Q Consensus 1036 ~~~ 1038 (1058)
+..
T Consensus 655 lg~ 657 (1062)
T KOG1912|consen 655 LGR 657 (1062)
T ss_pred ccc
Confidence 754
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-19 Score=188.88 Aligned_cols=281 Identities=17% Similarity=0.276 Sum_probs=217.3
Q ss_pred eEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC
Q 001535 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1058)
Q Consensus 337 ~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1058)
..+.++|-.+|.|+.|...|. ++++|+.|..|+||...++.++.+ ..||.+.|+.++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence 345678999999999999999 589999999999999999888765 889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEE----eec
Q 001535 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN----FEG 492 (1058)
Q Consensus 417 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~ 492 (1058)
+..++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||..-..+.. +..
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~ 313 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF 313 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence 99999999999999999999998776 58899999999999984 467889999999933211111 111
Q ss_pred -ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCC-EEEEEeccCCCCceEEEEe
Q 001535 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWN 570 (1058)
Q Consensus 493 -h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~~~~~~~~i~~wd 570 (1058)
....+.++.| ..++..+++++.|+.-..|.+..... +...+.-+.++.|-. +.+++- .+..+.+|+
T Consensus 314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn 381 (1113)
T KOG0644|consen 314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN 381 (1113)
T ss_pred ccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeee
Confidence 1234555555 33567789999999988886542111 111122222232332 233332 377889999
Q ss_pred CCCCceeeeeecccCcceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEEC
Q 001535 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1058)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 649 (1058)
+.+|.+.+.+.+|.. .+..+.++|-+..+ .+++.||...|||+..|.+++.... ++ ..+...+||++|..++...+
T Consensus 382 l~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~-gh-~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-GH-GKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred cccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec-cc-ceeeccccCCCCceEecCCC
Confidence 999999999999987 78899999977655 5688999999999999988877663 33 35778899999999999999
Q ss_pred CCcEEEEEccCC
Q 001535 650 DNGFKILANAIG 661 (1058)
Q Consensus 650 dg~i~iw~~~~~ 661 (1058)
-|.+.|.....+
T Consensus 459 hgql~i~g~gqs 470 (1113)
T KOG0644|consen 459 HGQLYILGTGQS 470 (1113)
T ss_pred CCceEEeccCCC
Confidence 999999876544
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=173.82 Aligned_cols=293 Identities=17% Similarity=0.239 Sum_probs=228.9
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC--CCC
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1058)
+|.+.|..|.|...|. .|++|+.|..|.+||+..++.... ...||...|....|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 4999999999999999 699999999999999998876543 3678999999999988 567
Q ss_pred EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEe---ecccC
Q 001535 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGHEA 495 (1058)
Q Consensus 420 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~---~~h~~ 495 (1058)
-|++++.||.|++=.+...........+..|.++|.-++.-|+... .|.+++.|+.+.-.| ..+.+...+ ..+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999887655444444467789999999999999887 799999999999999 665543332 22333
Q ss_pred ---CeeEEeecccCCceEEEEEeeCCeEEEEecCCCCce------EEe------eCCCCcEEEEEEccCCCEEEEEeccC
Q 001535 496 ---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDY------DAPGHWCTTMLYSADGSRLFSCGTSK 560 (1058)
Q Consensus 496 ---~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~------~~~------~~~~~~i~~i~~s~~~~~l~~~~~~~ 560 (1058)
...+++..|.. ...+++++.|..+++||.+..... ..+ ......|++++++.++.-+++..
T Consensus 280 ~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY--- 355 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY--- 355 (559)
T ss_pred cceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---
Confidence 45678887763 458999999999999998653322 111 12234799999997776665555
Q ss_pred CCCceEEEEeCCC--C----------cee-eeeecccCc-ceeEE-EEcCCCCEEEEEeCCCcEEEEECCCCceeeEecc
Q 001535 561 DGDSFLVEWNESE--G----------TIK-RTYAGFRKK-SNGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 561 ~~~~~i~~wd~~~--~----------~~~-~~~~~~~~~-~i~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 625 (1058)
.+..|+++.... | ..+ +.+++|.+. .|..+ .|.|..+++++|+.-|.|.||+..+++.+..+..
T Consensus 356 -nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 356 -NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred -cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 377788885432 2 223 337888652 24444 5688899999999999999999999999999987
Q ss_pred CCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 626 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 435 Dr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 435 DRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 766 7999999999999999999999999987443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=176.74 Aligned_cols=265 Identities=15% Similarity=0.233 Sum_probs=190.5
Q ss_pred eec-CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCC
Q 001535 340 SLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1058)
Q Consensus 340 ~~~-h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1058)
++. |.+.|+.++|+|... .|++++.||++.+|+++....-....+ .+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCc
Confidence 444 999999999999988 689999999999999944221111111 1234588999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCC-------cceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEe
Q 001535 419 NYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1058)
Q Consensus 419 ~~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~ 490 (1058)
+.+.+|+.||+|+.|++.... .......+.||.+.|+.+++++... .|++++.||+++.|+ ....+ .++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 999999999999999654221 1112225779999999999999888 799999999999999 44444 444
Q ss_pred eccc--CCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC-------CCcEEEEEEccCCCEEEEEeccCC
Q 001535 491 EGHE--APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKD 561 (1058)
Q Consensus 491 ~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~i~~i~~s~~~~~l~~~~~~~~ 561 (1058)
.... +.-.++.+..+. -...++...-+.-.+.++........+... ...+.-+.+.|.+...+++.
T Consensus 434 ~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---- 508 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---- 508 (577)
T ss_pred CCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc----
Confidence 3322 223444442221 012222222233333333333333333221 12567788889888888877
Q ss_pred CCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEecc
Q 001535 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 625 (1058)
.+..|+++|..+++++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cCCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 599999999999999999998887 899999999999999999999999999977766555443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-16 Score=145.97 Aligned_cols=256 Identities=13% Similarity=0.144 Sum_probs=188.2
Q ss_pred cEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCE
Q 001535 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1058)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1058)
.|.+-+++|.+++++++..+|.|.+..+..-.. ++. ...|+....... .|..++..++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa----------~~~gk~~iv~eq--ahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSA----------EPPGKLKIVPEQ--AHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---ccc----------CCCCCcceeecc--ccCCCeeeeeee--hhh
Confidence 455668899999999999999999998764211 110 112222222223 399999999997 458
Q ss_pred EEEEeCCcEEEEECCCceE------EEEec-------CCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEec
Q 001535 846 VMSATGGKISLFNMMTFKV------MTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1058)
Q Consensus 846 la~~~dg~i~vwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~ 912 (1058)
|.++.||.|+-|....... +.+.. ..-..|+++...|..+.++..| .|+.++-||+++|+...+++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc
Confidence 8888899999997653211 11111 1234689999999566665555 79999999999999999999
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceE--EEEcCCCCEEEEEECCeEEEEE
Q 001535 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR--VQFNADQVRMLVVHETQLAIYD 990 (1058)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~--l~~s~d~~~l~~~~d~~v~v~d 990 (1058)
||++.|.++.--.....++||+.||++++||.+++++...+............... .+..-+..+|++|....+.+|.
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWH 233 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEe
Confidence 99999999998666678999999999999999999988777654322221111112 4555577899999999999999
Q ss_pred CCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Q 001535 991 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1058)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~~~~~~ 1046 (1058)
+++.++...+.. .+++..+.|-.| .+++++..++|.-|.+ +|.+-..++
T Consensus 234 Lrsse~t~vfpi----pa~v~~v~F~~d--~vl~~G~g~~v~~~~l-~Gvl~a~ip 282 (325)
T KOG0649|consen 234 LRSSESTCVFPI----PARVHLVDFVDD--CVLIGGEGNHVQSYTL-NGVLQANIP 282 (325)
T ss_pred ccCCCceEEEec----ccceeEeeeecc--eEEEeccccceeeeee-ccEEEEecc
Confidence 999998888776 578888988644 6788888888999988 455555544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-17 Score=165.97 Aligned_cols=239 Identities=14% Similarity=0.151 Sum_probs=162.1
Q ss_pred ccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEE
Q 001535 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1058)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 479 (1058)
..+.||++.|+|++|+.||.+||+|+.|-.+.|||.-..+.+..+.+ +|.+.|.++.|-|....-.+++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--gHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST--GHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec--ccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34899999999999999999999999999999999987776665433 9999999999999755558999999999999
Q ss_pred Ee-cC----------CCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE----------EeeCCC
Q 001535 480 WE-LS----------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPG 538 (1058)
Q Consensus 480 wd-~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~~~~ 538 (1058)
+| .. ......+..|...|..++..+.. .+.+.+++.||+|+-+|++....-. .+...-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99 32 12345567799999999876542 2789999999999999998632211 111111
Q ss_pred CcEEEEEEccCCC-EEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECC--
Q 001535 539 HWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD-- 615 (1058)
Q Consensus 539 ~~i~~i~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~-- 615 (1058)
-...++.++|... +|++|+ .+...++||.+.. +..+..... ..+.|.. .++.++.|-..
T Consensus 201 ielk~ltisp~rp~~laVGg----sdpfarLYD~Rr~--lks~~s~~~-----~~~~pp~-------~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGG----SDPFARLYDRRRV--LKSFRSDGT-----MNTCPPK-------DCRCVRYFSPGHL 262 (758)
T ss_pred heeeeeeecCCCCceEEecC----CCchhhhhhhhhh--ccCCCCCcc-----ccCCCCc-------ccchhheecCccc
Confidence 2567899999655 566666 3888999996321 111111100 1111100 11112222111
Q ss_pred ---CCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCcccc
Q 001535 616 ---NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1058)
Q Consensus 616 ---~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1058)
.+..... ...++-++|+|+|.-|.+.-....|+++|+..++...
T Consensus 263 kn~~gn~~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 263 KNSQGNLDRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cCcccccccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 1111000 0124678999999888777777789999998874433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-17 Score=157.17 Aligned_cols=370 Identities=13% Similarity=0.172 Sum_probs=242.5
Q ss_pred EEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeE
Q 001535 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTS 622 (1058)
Q Consensus 544 i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~ 622 (1058)
.+|||+|++++++. +..+.+-|..+-+..+.+..-. .|.-+.|..+..+++++ ..++.|.+|++...+-...
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 57999999999997 5688888988888777766543 35668898888887775 5788999999998888777
Q ss_pred eccCCCCCCCceEEeeCCCCEE-EEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcc
Q 001535 623 TDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC 701 (1058)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~ 701 (1058)
+.. +...+..++|||||+.+ .+..-+-.|.+|.+.+.....-.... ..+..++|.|||++.+.....+ +
T Consensus 87 Ide--g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK-------~~~kg~~f~~dg~f~ai~sRrD-C 156 (447)
T KOG4497|consen 87 IDE--GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK-------TNVKGYAFHPDGQFCAILSRRD-C 156 (447)
T ss_pred ecc--CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc-------cCceeEEECCCCceeeeeeccc-H
Confidence 764 34578999999999655 45556889999999876333222221 2356789999999874332210 0
Q ss_pred eeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEE
Q 001535 702 KVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA 781 (1058)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 781 (1058)
+-.+.-. .-+-|.+-. .+ ...+-..+.+.|+|||..|++
T Consensus 157 -------------------------kdyv~i~---~c~~W~ll~--------~f-----~~dT~DltgieWsPdg~~laV 195 (447)
T KOG4497|consen 157 -------------------------KDYVQIS---SCKAWILLK--------EF-----KLDTIDLTGIEWSPDGNWLAV 195 (447)
T ss_pred -------------------------HHHHHHH---hhHHHHHHH--------hc-----CCCcccccCceECCCCcEEEE
Confidence 0000000 001122210 00 002334577899999997765
Q ss_pred eec--cCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEE
Q 001535 782 LGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFN 858 (1058)
Q Consensus 782 ~~~--dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd 858 (1058)
-.. +-.|..|. -.-.+..++++|.++++++|+ |+.++|.+
T Consensus 196 wd~~Leykv~aYe-------------------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 196 WDNVLEYKVYAYE-------------------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ecchhhheeeeee-------------------------------------eccceeEEEeccccceEEeeccchhhhhhc
Confidence 333 11222211 234578899999999999999 99999888
Q ss_pred CCCceEEEEecCCCC--------------------CeeEEEEecCCCcEEEEEECCCCEEEEEcc--------CceeeeE
Q 001535 859 MMTFKVMTTFMSPPP--------------------ASTFLAFHPQDNNIIAIGTEDSTIHIYNVR--------VDEVKSK 910 (1058)
Q Consensus 859 ~~~~~~~~~~~~~~~--------------------~i~~l~~s~~~~~~lasg~~dg~v~iwd~~--------~~~~~~~ 910 (1058)
--+.+....+- |-. ...|+.|.|.+ -...+|... +...+..
T Consensus 239 h~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~----------~~a~~~~~se~~YE~~~~pv~~~~ 307 (447)
T KOG4497|consen 239 HFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD----------LEAHIWEESETIYEQQMTPVKVHK 307 (447)
T ss_pred eeeeeehhhhc-cchhccCchhhhhhhhhcchhhhcccccccCCCc----------cccCccccchhhhhhhhcceeeec
Confidence 76666554442 111 12455565521 112223222 1111222
Q ss_pred ------ecccCCCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-
Q 001535 911 ------LKGHQKRITGLAFSTSLNILVSSGAD--AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV- 981 (1058)
Q Consensus 911 ------~~~h~~~V~~l~~s~d~~~l~s~s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~- 981 (1058)
+....-.+..++||+|..++++-... ..+-+||+...+.-..+... .+|....|.|....|+++
T Consensus 308 lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk-------~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 308 LKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK-------HPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred ccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc-------cceeEEEeCCCCceEEEEc
Confidence 22334567889999999999986543 56999999986644333222 789999999998888875
Q ss_pred ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCc
Q 001535 982 HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 1030 (1058)
Q Consensus 982 ~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~ 1030 (1058)
....+++|.......+..-.. ...|..+.|.-+|..++..+.|.-
T Consensus 381 g~srLY~W~psg~~~V~vP~~----GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 381 GKSRLYFWAPSGPRVVGVPKK----GFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceEEEEcCCCceEEecCCC----CceeeeEEecCCCcEEEEEcCCce
Confidence 456799999876444443222 578999999999999999888764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=160.51 Aligned_cols=297 Identities=12% Similarity=0.135 Sum_probs=210.7
Q ss_pred EEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCcccc-ccceeecccccCcccccccccCCCcceEEEEECC
Q 001535 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1058)
Q Consensus 338 ~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1058)
.-.++|.+.|.++.||.+|+ +||+|+.|..+++|++..--.... +++ + ..-..|...|.|++|..
T Consensus 50 KD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI------------~-~~~~~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPI------------G-VMEHPHRSNIFSLEFDL 115 (609)
T ss_pred hhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCc------------e-eccCccccceEEEEEcc
Confidence 33467999999999999999 599999999999999864322111 111 1 11334678999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCC-ee--EEeec
Q 001535 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KL--FNFEG 492 (1058)
Q Consensus 417 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~-~~--~~~~~ 492 (1058)
..++|.+|..+++|..-|+++.+.+.... -....+.|+.+..+|-.. .|++.+.++.|.+|| .... .+ ..+..
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999999999999999987665221 112334899999999977 799999999999999 4433 22 22233
Q ss_pred ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEE-------eeCCCCcEEEEEEccCCCEEEEEeccCCCCce
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1058)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-------~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~ 565 (1058)
......++.|+|.. ..+|++.+..+-+-+||.+.....+. +......-.++.|+|.|..+++.-. ...
T Consensus 193 ~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~ 267 (609)
T KOG4227|consen 193 SGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKC 267 (609)
T ss_pred CCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCC
Confidence 44556778888764 46889999999999999876544321 1111223367889999999887753 334
Q ss_pred EEEEeCCCCce-eeeeecccC-----cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------------------
Q 001535 566 LVEWNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--------------------- 618 (1058)
Q Consensus 566 i~~wd~~~~~~-~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------- 618 (1058)
-.+||+.+.++ +..+..... ..+.+++|-.+- .+++|+.+-.|++|.+....
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i 346 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI 346 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhhee
Confidence 45678776443 223321111 134556776554 48999999999999875311
Q ss_pred --eeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEcc
Q 001535 619 --ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 619 --~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
.+..+ .+|..-++.|.|+|...+|++.+-.+.++||.-.
T Consensus 347 ~~~~~VL--rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 347 EKELTVL--RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cceeEEE--ecccccccceeecCCcceEeccchhhheeccccc
Confidence 11223 3556678999999999999999999999999753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=159.34 Aligned_cols=291 Identities=13% Similarity=0.156 Sum_probs=195.1
Q ss_pred EEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC--C-CcEE
Q 001535 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--G-HWCT 542 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~-~~i~ 542 (1058)
.++++-..|+|++|| .+|+.+..++++...++.+.|......+.+.+++.||+|++||++.......+... . .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 678888899999999 88999999999999999999977545678999999999999999987765544332 2 3567
Q ss_pred EEEEccCCCEEEEEeccCCCCceEEEEeCCCCce-eeeeecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce-
Q 001535 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI- 619 (1058)
Q Consensus 543 ~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~- 619 (1058)
+++.+..++.++++..-...+..|.+||++..+. ++.+...+...|++++|+|.. +.|++|+.||.|.+||+.....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777767788888765555678899999998765 666654444489999999965 7889999999999999875432
Q ss_pred ---eeEeccCCCCCCCceEEeeCCC-CEEEEEECCCcEEEEEccCCccccccccCCC-cccccCcccceeeeeccccccc
Q 001535 620 ---LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPP-FEALRTPIESVALKVSASSAVS 694 (1058)
Q Consensus 620 ---~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~g~~l~~ 694 (1058)
+.++. +...|.++.|..++ +.+.+-+..++..+|+++.+......-...- ....+ ....+ .+++-
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r-~~~~~------dY~I~ 271 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR-KEDNC------DYVIN 271 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH-hhhhh------hheee
Confidence 22332 23368899999877 4588888899999999998743222111100 00000 00000 00000
Q ss_pred cCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCC-CCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEe
Q 001535 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV-TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1058)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1058)
.. ...+....+.++. .+...++-+................ .+|..-|+++.|.
T Consensus 272 ~~-------------------------~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 272 EH-------------------------SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFD 325 (376)
T ss_pred cc-------------------------cCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhh
Confidence 00 0111222222222 3454444443211111111112211 3467778899999
Q ss_pred cCcceEEEeeccCeeEEeee
Q 001535 774 NSAVGLLALGSNGVQKLWKW 793 (1058)
Q Consensus 774 ~~~~~l~~~~~dg~v~vw~~ 793 (1058)
..+..+.+||+||.+.+|..
T Consensus 326 ~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 326 VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccceeeccCCCceEEEEec
Confidence 99999999999999999974
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=153.96 Aligned_cols=279 Identities=16% Similarity=0.213 Sum_probs=194.8
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCccccccccc-CCCcceEEEEECCCCCE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNY 420 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~ 420 (1058)
+|.+.|+|+.|-.+++ |.+|...|.|++|++++.+.... +. .|...|+.+.--|+ +.
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeecCC-cc
Confidence 6999999999999986 68999999999999998765532 33 46788999998887 56
Q ss_pred EEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC-cEEEEe-c-----------CCCee
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVWE-L-----------SGRKL 487 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~-~i~iwd-~-----------~~~~~ 487 (1058)
|.+-+.|+.+.+|++..+..+. -|+-.++++.|++-. +...+... ..-.++ + ....+
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv 139 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQV 139 (323)
T ss_pred hhhcCCCceEEEEEccCcceEE------Eeeeeccccccccce----eccCCCcchhheecCCcccchhhhhccCcccee
Confidence 7788899999999998765332 355566666665431 11111111 111222 1 11111
Q ss_pred EEe----ecccCCeeEEeecccC-CceEEEEEeeCCeEEEEecCCCCceE----------EeeCCCCcEEEEEEccCCCE
Q 001535 488 FNF----EGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGHWCTTMLYSADGSR 552 (1058)
Q Consensus 488 ~~~----~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~~~~~~i~~i~~s~~~~~ 552 (1058)
... .+..+.+.+..+.... ..-++++|.++|.+.+||+.++.... ....+..++.++.+.+.-..
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR 219 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC
Confidence 111 1234456665543222 22356778899999999999874443 23345668888888865544
Q ss_pred EEEEeccCCCCceEEEEeCCCC--ce-eeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC
Q 001535 553 LFSCGTSKDGDSFLVEWNESEG--TI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~--~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 629 (1058)
=++++. +..+..|++... .+ ++....-....+..+.+-||++.+++++-|+.|+||+.++..++..+..|.
T Consensus 220 Gisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-- 293 (323)
T KOG0322|consen 220 GISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-- 293 (323)
T ss_pred CcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh--
Confidence 455543 556777776532 22 222222222357778899999999999999999999999999999998776
Q ss_pred CCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 630 PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 630 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
..|++++|+|+..++|.++.|+.|.+|++
T Consensus 294 agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 48999999999999999999999999986
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-17 Score=151.09 Aligned_cols=309 Identities=14% Similarity=0.148 Sum_probs=197.5
Q ss_pred ceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcE
Q 001535 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1058)
Q Consensus 530 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1058)
....+..+...++++.|..+++ |.++. ..|.+++|++.+.+....++++....+..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~----~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGL----SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhccc----ccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3445567888899999988776 55554 48999999999999999998777668888888776 678899999999
Q ss_pred EEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeecc
Q 001535 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1058)
Q Consensus 610 ~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 689 (1058)
.+|++..+..+..-.. .++++.|.+-. +... +....|-+.-..+.... .|..+
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~---~k~~eqll~yp~rgsde--~h~~D--------------- 132 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKK---PKNSEQLLEYPSRGSDE--THKQD--------------- 132 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccC---CCcchhheecCCcccch--hhhhc---------------
Confidence 9999987655443221 23444444321 1111 11111110000000000 00000
Q ss_pred ccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEE
Q 001535 690 SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769 (1058)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 769 (1058)
++..-.+++-+-. ..+..+.+.+
T Consensus 133 ------------------------------------------~g~~tqv~i~dd~---------------~~~Klgsvmc 155 (323)
T KOG0322|consen 133 ------------------------------------------GGDTTQVQIADDS---------------ERSKLGSVMC 155 (323)
T ss_pred ------------------------------------------cCccceeEccCch---------------hccccCceee
Confidence 0000001111100 0113344444
Q ss_pred EEEec-Ccc--eEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEE
Q 001535 770 LLYTN-SAV--GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1058)
Q Consensus 770 l~~s~-~~~--~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1058)
..+.. ++. .+++|.++|.+.+||++.+.. +.+......+...... |..+|.++.|.+.-..=
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-------------~~~~~~~~kv~~~~as--h~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-------------IIQLPQSSKVESPNAS--HKQPVLSLDYASSCDRG 220 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCce-------------eeccccccccccchhh--ccCcceeeeechhhcCC
Confidence 44322 222 356677799999999876521 1111221122222333 89999999998654444
Q ss_pred EEEe-CCcEEEEECCCc--eE--EEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEE
Q 001535 847 MSAT-GGKISLFNMMTF--KV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1058)
Q Consensus 847 a~~~-dg~i~vwd~~~~--~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l 921 (1058)
++|+ +..+..|++... .+ .....-....|..+..-| |++++|+++.|+.||||+.++...+..++-|++.|+++
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence 5555 677888887643 22 222222345688889999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEC
Q 001535 922 AFSTSLNILVSSGADAQLCVWSI 944 (1058)
Q Consensus 922 ~~s~d~~~l~s~s~Dg~i~iwd~ 944 (1058)
+|+||...+|++|.|++|.+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999986
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=140.75 Aligned_cols=278 Identities=18% Similarity=0.249 Sum_probs=190.7
Q ss_pred cEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCccccc--ccccCCCcceEEEEECCCCCEEEE
Q 001535 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQA--SIFKDVPISVSRVAWSPDGNYVGV 423 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~spdg~~las 423 (1058)
.|.+-++||.++ +|+.|..+|+|.+..+.+--.-.. ..+-+. ....+|.++|+.++|. .++|++
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa-----------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls 77 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA-----------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLS 77 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc-----------CCCCCcceeeccccCCCeeeeeee--hhheee
Confidence 466678999999 689999999999999864211000 011111 1257899999999998 557777
Q ss_pred EeCCCeEEEEEecCCCc---ceeeee--ecccc-----cCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeec
Q 001535 424 AFTKHLIQLYSYAGSND---LRQHSQ--IDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1058)
Q Consensus 424 ~~~dg~i~iwd~~~~~~---~~~~~~--l~~h~-----~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~ 492 (1058)
|+ ||.|+-|.+..... .+...+ ...|. ..|++|-..|.... ++.++.|+.++-|| .+|+..+.++|
T Consensus 78 ~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 78 GG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred cc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcC
Confidence 75 59999998864432 111101 11233 35889999988774 45555799999999 99999999999
Q ss_pred ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC----------CCcEEEEEEccCCCEEEEEeccCCC
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDG 562 (1058)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----------~~~i~~i~~s~~~~~l~~~~~~~~~ 562 (1058)
|++.|.+++-... + ..+++|+.||++|+||.++.+....+... +.+|.+++. +..+++.|+
T Consensus 155 HtDYvH~vv~R~~-~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg----- 225 (325)
T KOG0649|consen 155 HTDYVHSVVGRNA-N-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG----- 225 (325)
T ss_pred Ccceeeeeeeccc-C-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----
Confidence 9999999986322 3 46889999999999999998887765432 235666654 556888875
Q ss_pred CceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCC-
Q 001535 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG- 641 (1058)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~- 641 (1058)
...+.+|.++..+...++.-.. .+..+.|. ...+++++..+.|.-|.+ +|..........+ ......|+...
T Consensus 226 Gp~lslwhLrsse~t~vfpipa--~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~--~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 226 GPKLSLWHLRSSESTCVFPIPA--RVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVEST--ACYSASWQTSPI 298 (325)
T ss_pred CCceeEEeccCCCceEEEeccc--ceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCcc--ceeeecccCCce
Confidence 6679999999999888877543 35566675 457888888888999987 4544444443222 33444444322
Q ss_pred CEEEEEECCCcEEEE
Q 001535 642 NLLAVTTADNGFKIL 656 (1058)
Q Consensus 642 ~~l~~~~~dg~i~iw 656 (1058)
+++-.++....+.|+
T Consensus 299 k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEecccceeeeee
Confidence 344445555555554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=172.86 Aligned_cols=251 Identities=14% Similarity=0.173 Sum_probs=188.3
Q ss_pred cccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEec-----CCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~-----~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 475 (1058)
.+..|.+.|..++|.|-...|++|+.||++++|++. .+..+..+.+|.+|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3345667789999999999999999999 899999999
Q ss_pred cEEEEe-c------CC----CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC--CCcEE
Q 001535 476 LIKVWE-L------SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCT 542 (1058)
Q Consensus 476 ~i~iwd-~------~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~ 542 (1058)
+|+.|+ . +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... .++... .+...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999994 1 11 2235788999999999998765 5799999999999998765544 222222 22334
Q ss_pred EEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccC------cceeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001535 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1058)
Q Consensus 543 ~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 616 (1058)
++.+-.....+..++. ..+.-.+++...+.....+..... ..+..+..+|.+...+++.+|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4444332211111110 122222334444444444332211 2356678889999999999999999999999
Q ss_pred CceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
++++.....+ ...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999887755 447999999999999999999999999998654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=166.90 Aligned_cols=275 Identities=11% Similarity=0.145 Sum_probs=175.9
Q ss_pred ccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeec-cCeeEEeeeeccccCCCCcccccc
Q 001535 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASA 808 (1058)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~ 808 (1058)
++...++.|.+|++... +.+..+.... ..+....++++|+++.|++++. ++.|.+|+++.
T Consensus 6 ~~~~~~~~I~~~~~~~~---g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~------------- 66 (330)
T PRK11028 6 IASPESQQIHVWNLNHE---GALTLLQVVD---VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD------------- 66 (330)
T ss_pred EEcCCCCCEEEEEECCC---CceeeeeEEe---cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence 45566799999999531 2222221111 3345678899999999877654 78888887641
Q ss_pred cceeeccCCCcee-eeeccCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEECCC-c---eEEEEecCCCCCeeEEEEe
Q 001535 809 VPQHWLPSSGLLM-ANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT-F---KVMTTFMSPPPASTFLAFH 881 (1058)
Q Consensus 809 ~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~---~~~~~~~~~~~~i~~l~~s 881 (1058)
+|.+. ..... .......++++|+|+++++++ ++.|.+|++.+ + +.+..+. +.....+++++
T Consensus 67 --------~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 134 (330)
T PRK11028 67 --------DGALTFAAESP---LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID 134 (330)
T ss_pred --------CCceEEeeeec---CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC
Confidence 11110 00011 223456899999999998886 78899999964 2 2233332 23346778999
Q ss_pred cCCCcEEE-EEECCCCEEEEEccCceeee-------EecccCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECCC--Ccee
Q 001535 882 PQDNNIIA-IGTEDSTIHIYNVRVDEVKS-------KLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDT--WEKR 950 (1058)
Q Consensus 882 ~~~~~~la-sg~~dg~v~iwd~~~~~~~~-------~~~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~--~~~~ 950 (1058)
| ++++++ +...++.|.+||+.+...+. .... ......++|+|||++++++.. +++|.+|+++. ++..
T Consensus 135 p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 135 P-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred C-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 9 777764 55567999999997632221 1111 234568999999999988876 89999999984 3322
Q ss_pred ceEEEecCCCC--CCCCceEEEEcCCCCEEEEE--ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001535 951 KSVTIHIPAGK--TPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1058)
Q Consensus 951 ~~~~~~~~~~~--~~~~v~~l~~s~d~~~l~~~--~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~ 1026 (1058)
........... .......+.|+|||++++++ .++.|.+|++........+..+..-......++|+|||++|++++
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 22222111111 11223468999999999997 367899999865432111111110022445789999999999877
Q ss_pred C-CCcEEEEeCC
Q 001535 1027 C-DGNIGVFDAD 1037 (1058)
Q Consensus 1027 ~-dg~i~iw~~~ 1037 (1058)
. +++|.+|+++
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 5 8999999874
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-16 Score=171.71 Aligned_cols=269 Identities=15% Similarity=0.200 Sum_probs=202.8
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCC
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1058)
+|++++. ......+.-...|+|++|+|....++|.|+.+|.|.+||+..+....... .......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccCC
Confidence 8999887 88888999999999999999988899999999999999998876531100 112255689
Q ss_pred cceEEEEECCCCC--EEEEEeCCCeEEEEEecCCCcceeeeeec---------ccccCeEEEEeecCCCeeEEEEEeCCC
Q 001535 407 ISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1058)
Q Consensus 407 ~~V~~l~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~l~~s~d~~~~~l~s~~~d~ 475 (1058)
.+|+.+.|-.+-. -+++++.||.|+.|+++.-........+. .-...+++++|.+.... .++.|+++|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 9999999977544 49999999999999886543311111111 12346899999998776 789999999
Q ss_pred cEEEEe---cCCCe------eEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecC-CCCceEEeeCCCCcEEEEE
Q 001535 476 LIKVWE---LSGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (1058)
Q Consensus 476 ~i~iwd---~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~i~~i~ 545 (1058)
.|.--+ .+-.. ...+..|.++|+++.++|-.. ..+++++ |.++++|.-. .......+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 998744 11122 345667899999999877643 3444554 9999999887 5566666777777899999
Q ss_pred EccCCCEEEEEeccCCCCceEEEEeCCCC--ceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001535 546 YSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1058)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 616 (1058)
|||-...++++.. .+|.|.+||+... .++.+..-. ....+.+.|++.|+.|++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998877766653 6999999998754 344444333 33667788999999999999999999999864
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=154.12 Aligned_cols=272 Identities=12% Similarity=0.138 Sum_probs=193.5
Q ss_pred EEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC--CCCEEEEEeCCCeEEEEEec
Q 001535 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (1058)
Q Consensus 359 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~dg~i~iwd~~ 436 (1058)
.+|++.+.|+|++||..+++.+.. +++|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 588888999999999999887754 778888899999987 46788999999999999999
Q ss_pred CCCcceeeeeecccc-cCeEEEEeecCCCeeEEEEEe----CCCcEEEEe-cCCCe-eEE-eecccCCeeEEeecccCCc
Q 001535 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG----DDKLIKVWE-LSGRK-LFN-FEGHEAPVYSICPHHKENI 508 (1058)
Q Consensus 437 ~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~~----~d~~i~iwd-~~~~~-~~~-~~~h~~~v~~~~~~~~~~~ 508 (1058)
+......+ .+.+|. .+..+++..-.+. .+++|. .|-.|.+|| +..+. +.. ...|.+.|++++|+|+ +.
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence 87655443 244555 5677777765666 667664 356899999 55444 544 4679999999999998 45
Q ss_pred eEEEEEeeCCeEEEEecCCCCc---eEEeeCCCCcEEEEEEccCC-CEEEEEeccCCCCceEEEEeCCCCceeeeeeccc
Q 001535 509 QFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1058)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~i~~i~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1058)
++|++|+.||.|.+||+..... +.....++..|.++.|..++ +.|.+.+ ......+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT----H~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT----HMETFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE----ccCceeEEEccCCChhhcccCcc
Confidence 7999999999999999875432 23344566789999999887 3354444 27789999999887655544321
Q ss_pred C------------cceeEEEEcC-CCCEEEEEeC-CCcEEEEECC---CCce---eeEeccCCCCCCCceEEeeCCCCEE
Q 001535 585 K------------KSNGVVQFDT-TQNHFLAVGE-DSQIKFWDMD---NVNI---LTSTDAEGGLPNLPRLRFSKEGNLL 644 (1058)
Q Consensus 585 ~------------~~i~~~~~~~-~~~~l~~~~~-dg~i~vwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l 644 (1058)
- ..|. +.+| +...++.++. -+...++-+. ++.. +..+.. ++...|+++.|...+.++
T Consensus 255 ~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVL 331 (376)
T ss_pred chhhhHHhhhhhhheee--cccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhccccee
Confidence 0 0111 2223 3344444443 5555555433 3332 333332 345568889998889999
Q ss_pred EEEECCCcEEEEEccC
Q 001535 645 AVTTADNGFKILANAI 660 (1058)
Q Consensus 645 ~~~~~dg~i~iw~~~~ 660 (1058)
.+|+.||.+.+|..+.
T Consensus 332 ~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVED 347 (376)
T ss_pred eccCCCceEEEEecCC
Confidence 9999999999998643
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-16 Score=146.65 Aligned_cols=209 Identities=12% Similarity=0.250 Sum_probs=156.9
Q ss_pred CcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEec-
Q 001535 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK- 841 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 841 (1058)
+-+.|.++.|.|++..+++.. |..|.+|++...... .+. +....-. .+....++-+|||
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-----vae------------v~ss~s~--e~~~~ftsg~WspH 181 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-----VAE------------VLSSESA--EMRHSFTSGAWSPH 181 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-----hee------------ecccccc--cccceecccccCCC
Confidence 456899999999999888877 778999987643210 000 0000001 1455677888998
Q ss_pred -CCCEEEEEeCCcEEEEECCCceEEEEec-CCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccC-ceeeeEecccCCCe
Q 001535 842 -NDSYVMSATGGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKSKLKGHQKRI 918 (1058)
Q Consensus 842 -dg~~la~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~-~~~~~~~~~h~~~V 918 (1058)
||..+++.+|+++..||+++.++...+. .|...|..+.|.|....+||+|++||.|+|||.+. ...+.++.+|..-|
T Consensus 182 Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 182 HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred CccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 8999999999999999999887766665 58889999999995566799999999999999985 46789999999999
Q ss_pred eEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeceEE------------------------EecCCCCCCCCceEEEEcC
Q 001535 919 TGLAFSTS-LNILVSSGADAQLCVWSIDTWEKRKSVT------------------------IHIPAGKTPTGDTRVQFNA 973 (1058)
Q Consensus 919 ~~l~~s~d-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------------------~~~~~~~~~~~v~~l~~s~ 973 (1058)
.++.|+|. .++++++|.|..|.+|...+-.....+. +.....|. +.|.+++||.
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE-DSVY~~aWSs 340 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE-DSVYALAWSS 340 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc-cceEEEeecc
Confidence 99999985 4688899999999999875522111110 11122222 7889999999
Q ss_pred CCCEEEEE--ECCeEEEEECC
Q 001535 974 DQVRMLVV--HETQLAIYDAS 992 (1058)
Q Consensus 974 d~~~l~~~--~d~~v~v~d~~ 992 (1058)
-..+++++ -||++.|=.++
T Consensus 341 adPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 341 ADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CCCeeEEEeccCceEEeecCC
Confidence 88888874 68888887665
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-15 Score=141.48 Aligned_cols=280 Identities=15% Similarity=0.272 Sum_probs=202.4
Q ss_pred cCCCcEEEEEee--cCCCeEEEEEec----cceEEEEEcc--CCCccccccceeecccccCcccccccccCCCcceEEEE
Q 001535 342 HQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1058)
Q Consensus 342 ~h~~~V~~v~~s--p~g~~lla~gs~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1058)
.-.-.+.++.|| |+.+..||.||. .+.|.|-.+. +++.+... -..|..+++.+.
T Consensus 42 ~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~YP~tK~~ 103 (364)
T KOG0290|consen 42 NAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPYPVTKLM 103 (364)
T ss_pred cCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCCCccceE
Confidence 344568888888 566667899874 2455554443 33333211 135889999999
Q ss_pred ECCCC-----CEEEEEeCCCeEEEEEecCCCc-ceeeee-----ecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-
Q 001535 414 WSPDG-----NYVGVAFTKHLIQLYSYAGSND-LRQHSQ-----IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1058)
Q Consensus 414 ~spdg-----~~las~~~dg~i~iwd~~~~~~-~~~~~~-----l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd- 481 (1058)
|.|+. ++||+.+ -.+++|.+...+. +..... -..+.+++++..|+.-... ++.++|-|-+..|||
T Consensus 104 wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCTiWdi 180 (364)
T KOG0290|consen 104 WIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCTIWDI 180 (364)
T ss_pred ecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEEEEEE
Confidence 99986 3666653 3699999874221 111111 2246779999999987666 899999999999999
Q ss_pred cCC---CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE-EeeCC--CCcEEEEEEcc-CCCEEE
Q 001535 482 LSG---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAP--GHWCTTMLYSA-DGSRLF 554 (1058)
Q Consensus 482 ~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~--~~~i~~i~~s~-~~~~l~ 554 (1058)
.+| .....+-.|...|..++|.. +.-+.+++.+.||.||+||++..+... .+... ..+...++|++ |-++++
T Consensus 181 e~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymA 259 (364)
T KOG0290|consen 181 ETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMA 259 (364)
T ss_pred eeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHh
Confidence 655 34677889999999999976 345799999999999999998766543 33333 34778888887 456777
Q ss_pred EEeccCCCCceEEEEeCCCC-ceeeeeecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce------eeEeccC
Q 001535 555 SCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI------LTSTDAE 626 (1058)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~ 626 (1058)
+... ....|.+.|++.. ..+..+++|.. .|+.++|.|.. ..|.++|+|..+.+||+...-. +....
T Consensus 260 Tf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-- 333 (364)
T KOG0290|consen 260 TFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-- 333 (364)
T ss_pred hhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--
Confidence 7665 4677999999865 67888999987 89999999965 7888999999999999976332 22222
Q ss_pred CCCCCCceEEeeC-CCCEEEEEECC
Q 001535 627 GGLPNLPRLRFSK-EGNLLAVTTAD 650 (1058)
Q Consensus 627 ~~~~~v~~v~~s~-~~~~l~~~~~d 650 (1058)
....|+.+.|++ .+.+++.+...
T Consensus 334 -a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 334 -AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred -ccceeeeeeecccCCCEEEEEecC
Confidence 233699999997 56788777653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-14 Score=157.20 Aligned_cols=272 Identities=13% Similarity=0.187 Sum_probs=177.2
Q ss_pred EEEEEeccceEEEEEccC-CCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEEec
Q 001535 359 LLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYA 436 (1058)
Q Consensus 359 lla~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~dg~i~iwd~~ 436 (1058)
++++...++.|.+||+.+ ++..... .+ .+.+....++++||+++|++++ .++.|.+|++.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~-----------------~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQ-----------------VV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeee-----------------EE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 455556799999999964 3321100 02 1335677899999999987764 57889999997
Q ss_pred CCCcceeeeeecccccCeEEEEeecCCCeeEEEEEe-CCCcEEEEe-c-CCCe---eEEeecccCCeeEEeecccCCceE
Q 001535 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-L-SGRK---LFNFEGHEAPVYSICPHHKENIQF 510 (1058)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd-~-~~~~---~~~~~~h~~~v~~~~~~~~~~~~~ 510 (1058)
....+...... ...+....++|+|+++ ++++++ .++.|.+|+ . .|.. +..+.+ .....+++++| ++++
T Consensus 66 ~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~~ 139 (330)
T PRK11028 66 DDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNRT 139 (330)
T ss_pred CCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCCE
Confidence 32222222222 2334577899999999 455444 588999999 4 3422 232322 23456677765 5566
Q ss_pred EE-EEeeCCeEEEEecCCCCceE-----Ee-eCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC--Cc--eeee
Q 001535 511 IF-STAIDGKIKAWLYDTMGSRV-----DY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GT--IKRT 579 (1058)
Q Consensus 511 l~-s~~~dg~i~~wd~~~~~~~~-----~~-~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~ 579 (1058)
++ +...++.|.+||+++..... .. ...+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEE
Confidence 65 55567999999998643221 11 122445678999999999988763 478999999873 32 3333
Q ss_pred eecccC-----cceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----eeeEeccCCCCCCCceEEeeCCCCEEEEEEC
Q 001535 580 YAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1058)
Q Consensus 580 ~~~~~~-----~~i~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 649 (1058)
+..... .....+.++|++++++++. .++.|.+|++.... .+..... + .....++++|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~--~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-E--TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-c--ccCCceEECCCCCEEEEEEc
Confidence 332111 1123478999999999986 47899999986432 2222221 1 13568999999999998776
Q ss_pred -CCcEEEEEccC
Q 001535 650 -DNGFKILANAI 660 (1058)
Q Consensus 650 -dg~i~iw~~~~ 660 (1058)
+++|.+|++..
T Consensus 294 ~~~~v~v~~~~~ 305 (330)
T PRK11028 294 KSHHISVYEIDG 305 (330)
T ss_pred cCCcEEEEEEcC
Confidence 88999998753
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-16 Score=146.59 Aligned_cols=206 Identities=22% Similarity=0.367 Sum_probs=158.4
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC--CCCE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNY 420 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~ 420 (1058)
+-+.|.|+.|.|++.. +|+- .|..|.+|++..+..+.. .+ ....-.+|....++-+||| ||..
T Consensus 122 avg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred HhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchhe-ee------------cccccccccceecccccCCCCccce
Confidence 5569999999999996 5554 489999999988766321 11 1111234677888899999 7888
Q ss_pred EEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeEEeecccCCee
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~h~~~v~ 498 (1058)
+++. .|+++..||+.+.++...+ -.+|...|.++.|+|+-+. +|++|++||.|+||| .+..++..+.+|...|+
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 8876 5889999999987766543 2379999999999998887 899999999999999 66778999999999999
Q ss_pred EEeecccCCceEEEEEeeCCeEEEEecCCC-----------------------------CceEEeeCCCCcEEEEEEccC
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-----------------------------GSRVDYDAPGHWCTTMLYSAD 549 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-----------------------------~~~~~~~~~~~~i~~i~~s~~ 549 (1058)
++.|++..| +++++|+.|..|.+|....- +.+.++..|...|.+++||.-
T Consensus 263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 999998865 79999999999999965321 112245567778999999886
Q ss_pred CCEEEEEeccCCCCceEEEEeC
Q 001535 550 GSRLFSCGTSKDGDSFLVEWNE 571 (1058)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~~wd~ 571 (1058)
..++++.-. -||++.|=.+
T Consensus 342 dPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 342 DPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred CCeeEEEec---cCceEEeecC
Confidence 666554322 3777766443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=167.80 Aligned_cols=306 Identities=18% Similarity=0.338 Sum_probs=209.0
Q ss_pred ccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecc---cCCeeEEeecccCCceEEEEEeeCCeEEEEecC
Q 001535 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526 (1058)
Q Consensus 451 ~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~ 526 (1058)
...-..+.|+|-.. .++++.....|+||| ..++.+..|..+ ...|+.+.+....|..++++++.||.|++|+--
T Consensus 1064 ~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33566778888877 688888778999999 999998877654 456888888777788899999999999999532
Q ss_pred CCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCC
Q 001535 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1058)
Q Consensus 527 ~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1058)
.... +...++++ |..-++. ..+..+ .-..+.|.....+|+++|+-
T Consensus 1142 ~~~~------------------~~~eLVTa------------w~~Ls~~----~~~~r~-~~~v~dWqQ~~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1142 ADKW------------------KKPELVTA------------WSSLSDQ----LPGARG-TGLVVDWQQQSGHLLVTGDV 1186 (1387)
T ss_pred cccc------------------CCceeEEe------------ecccccc----CccCCC-CCeeeehhhhCCeEEecCCe
Confidence 1110 11233333 2111111 111111 11345677777788888888
Q ss_pred CcEEEEECCCCceeeEeccCCCCCCCceEEeeC-CCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceee
Q 001535 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1058)
Q Consensus 607 g~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 685 (1058)
..|+|||.........+.... ...|+++.-+. .|+.++.|..||.|++||.......
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------- 1244 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------- 1244 (1387)
T ss_pred eEEEEEecccceeEeecccCC-CccceeecccccCCceEEEeecCCceEEeecccCCcc---------------------
Confidence 999999998888777776543 33456655443 5799999999999999997543110
Q ss_pred eeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcc
Q 001535 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (1058)
Q Consensus 686 s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1058)
..|.+|.- |..
T Consensus 1245 --------------------------------------------------s~v~~~R~-------------------h~~ 1255 (1387)
T KOG1517|consen 1245 --------------------------------------------------SLVCVYRE-------------------HND 1255 (1387)
T ss_pred --------------------------------------------------ccceeecc-------------------cCC
Confidence 11222221 444
Q ss_pred c--EEEEEEecCcce-EEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecC
Q 001535 766 K--VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1058)
Q Consensus 766 ~--i~~l~~s~~~~~-l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1058)
. |..+.+.+.|-. |++++.+|.|++||+........-. ....|+ ..+..+++..+++
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-----iv~~~~---------------yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-----IVAHWE---------------YGSALTALTVHEH 1315 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----eeeccc---------------cCccceeeeeccC
Confidence 4 888888887665 9999999999999976421000000 000010 2335899999999
Q ss_pred CCEEEEEeCCcEEEEECCCceEEEEecC-------CCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCce
Q 001535 843 DSYVMSATGGKISLFNMMTFKVMTTFMS-------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1058)
Q Consensus 843 g~~la~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~ 906 (1058)
...+|+|+.+.|+||++.. +.+..+.. ..+.+.|++|+| -.-++|+|+.|.+|.||......
T Consensus 1316 apiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1316 APIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 9999999999999999864 33333322 234689999999 78889999999999999876543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-15 Score=163.19 Aligned_cols=251 Identities=17% Similarity=0.161 Sum_probs=182.6
Q ss_pred CCcceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCc--ceeee-eecccccCeEEEEeecCCCeeEEEEEeCCCcEEEE
Q 001535 405 VPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSND--LRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1058)
Q Consensus 405 h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~--~~~~~-~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 480 (1058)
-...|.|++|+| +..+||.|+.+|+|.+||+..+.. ...+. ....|..+|+.+.|..+-...-|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467999999999 677888899999999999987765 22111 23468999999999876442358999999999999
Q ss_pred ecCC-Ce-e-----EEee------cccCCeeEEeecccCCceEEEEEeeCCeEEEEe---cCCCC-----ceEEeeCCCC
Q 001535 481 ELSG-RK-L-----FNFE------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL---YDTMG-----SRVDYDAPGH 539 (1058)
Q Consensus 481 d~~~-~~-~-----~~~~------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd---~~~~~-----~~~~~~~~~~ 539 (1058)
+.+. .. . .... .....++++.|.+. +...++.|+.+|.|.--+ .+... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8222 11 1 1111 12345788899765 446899999999987632 22222 1225566788
Q ss_pred cEEEEEEccCCCEEEEEeccCCCCceEEEEeCC-CCceeeeeecccCcceeEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001535 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1058)
Q Consensus 540 ~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~ 617 (1058)
+|.++.++|-+..++..+ +|-.+++|... ...++..+..+.. .+..++|+|... .++++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999887666555 38899999987 5566666666655 689999999764 5666778999999999765
Q ss_pred ceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 618 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
.........-+....+.+.|+++|+.+++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 43333222222445678889999999999999999999999654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-15 Score=147.02 Aligned_cols=298 Identities=15% Similarity=0.169 Sum_probs=216.7
Q ss_pred EeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCC------CCceeeeeecccCcceeEEEEcCCCCEEEEEeCC
Q 001535 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1058)
Q Consensus 533 ~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1058)
-+..|.+.|.++.|+.++++|++|+ .+..+.+|++. +.+++.....|+...|.+++|...+.++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGG----DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGG----DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecC----CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3456788999999999999999998 48899999975 3466666666665689999999999999999999
Q ss_pred CcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeee
Q 001535 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1058)
Q Consensus 607 g~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 686 (1058)
++|...|+++.+.+.........+.|..+..+|..+.+++.+.++.|.+||......... -+...
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~---------------~~~~A 191 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS---------------LVLPA 191 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc---------------eeeec
Confidence 999999999999999887777677899999999999999999999999999865411110 00000
Q ss_pred eccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCccc
Q 001535 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1058)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1058)
.....
T Consensus 192 ---------------------------------------------------------------------------N~~~~ 196 (609)
T KOG4227|consen 192 ---------------------------------------------------------------------------NSGKN 196 (609)
T ss_pred ---------------------------------------------------------------------------CCCcc
Confidence 02234
Q ss_pred EEEEEEecCcceE-EEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCC-CCCCeeEEEEecCCC
Q 001535 767 VVRLLYTNSAVGL-LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN-LEEAVPCIALSKNDS 844 (1058)
Q Consensus 767 i~~l~~s~~~~~l-~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~ 844 (1058)
...+.|.|....| ++....|-+-+||+...... ++... ...+.. ....-..+.|+|+|.
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~------------~~~~~-------~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARP------------VYQRS-------MFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccch------------HHhhh-------ccccCcccchhhhheeeCCCCC
Confidence 4566777766555 45555688889986543210 00000 001100 122335678999998
Q ss_pred EEEEEe-CCcEEEEECCCceEE-EEecCCC-------CCeeEEEEecCCCcEEEEEECCCCEEEEEccCc----------
Q 001535 845 YVMSAT-GGKISLFNMMTFKVM-TTFMSPP-------PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---------- 905 (1058)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~-~~~~~~~-------~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~---------- 905 (1058)
.+.+-- ...-.+||+-+..+. ..+. |. ..+.+++|.. ..-+++|+.+-.|++|.+...
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG 334 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIG 334 (609)
T ss_pred eehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccC
Confidence 887766 444667888775443 2332 22 2477888874 456999999999999998531
Q ss_pred -------------eeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001535 906 -------------EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 906 -------------~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~ 946 (1058)
+.+..++||..-++.|.|+|...+|++.+-.+.++||.--.
T Consensus 335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 23457899999999999999999999999999999997543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-15 Score=166.04 Aligned_cols=255 Identities=11% Similarity=0.052 Sum_probs=181.1
Q ss_pred cccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEEecCC----CcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC
Q 001535 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~----~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 475 (1058)
.+..|...|..++.++. +.++++||.||+|++||...- ...+...++.....++.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 37778999999998875 499999999999999998632 22333334544677899999999999 788899999
Q ss_pred cEEEEecCC---Cee-----EEeecc-cCCeeEE-eecccCCceEEEEEeeCCeEEEEecCCCCceEEe--eCCCCcEEE
Q 001535 476 LIKVWELSG---RKL-----FNFEGH-EAPVYSI-CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTT 543 (1058)
Q Consensus 476 ~i~iwd~~~---~~~-----~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~i~~ 543 (1058)
.|++.+.+. ... .....+ .+.+.++ ++........++.+..-+.|..||.+........ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998222 111 111111 2334333 3433222237888889999999999877665543 445668999
Q ss_pred EEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCC---CCEEEEEe--CCCcEEEEECCCCc
Q 001535 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVG--EDSQIKFWDMDNVN 618 (1058)
Q Consensus 544 i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~--~dg~i~vwd~~~~~ 618 (1058)
++.+|.+.++++|+. .|.+.+||++-+.++..........+..++.+|- ....++++ ..+.|-+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999985 8899999999998888877655556777766653 34555544 57889999999987
Q ss_pred eeeEeccCCCC-----------------CCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 619 ILTSTDAEGGL-----------------PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 619 ~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
....+...... -......+..-+..+.+|+.|..|+.||....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 76665432110 01122233334568889999999999998765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-15 Score=167.13 Aligned_cols=235 Identities=12% Similarity=0.100 Sum_probs=164.1
Q ss_pred cceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCcce
Q 001535 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (1058)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~ 442 (1058)
+..|.+||....... .+..|...+.+.+|||||+.||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998654321 156688899999999999999987654 469999998875322
Q ss_pred eeeeecccccCeEEEEeecCCCeeEEEE-EeCCCcEEEE--ecCCCeeEEeecccCCeeEEeecccCCceEEEEEe-eCC
Q 001535 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG 518 (1058)
Q Consensus 443 ~~~~l~~h~~~v~~l~~s~d~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg 518 (1058)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |..+..+..+..+...+.+.+|+| ||+.|+.++ .+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 2223333 44789999999 4554 4568876665 555555667777777788888866 667666544 678
Q ss_pred eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCC
Q 001535 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1058)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1058)
..++|+++..........+.. ....|+|||+.+++.+. ..+.+||+.+++........ ......|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 889998765433322222322 45789999999988762 34667999988765433222 234578999999
Q ss_pred EEEEEeCCCcEEEEEC--CCCceeeEeccCCCCCCCceEEeeCC
Q 001535 599 HFLAVGEDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 599 ~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1058)
+|++++.++.+.+|++ .+|.....+..+. ..+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999998888875 3577777775433 36788999984
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.6e-15 Score=162.89 Aligned_cols=260 Identities=18% Similarity=0.228 Sum_probs=176.5
Q ss_pred cEEEEEEec--CcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecC-
Q 001535 766 KVVRLLYTN--SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN- 842 (1058)
Q Consensus 766 ~i~~l~~s~--~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 842 (1058)
.|..+.+-. |...+++++.||.|+||+--.... ++ ..-+.-|..-++.... ..+.-.-+.|...
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---~~---~eLVTaw~~Ls~~~~~-------~r~~~~v~dWqQ~~ 1177 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---KK---PELVTAWSSLSDQLPG-------ARGTGLVVDWQQQS 1177 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEeccccccc---CC---ceeEEeeccccccCcc-------CCCCCeeeehhhhC
Confidence 445555433 445678888888888886211100 00 0011223332222111 1111133456554
Q ss_pred CCEEEEEeCCcEEEEECCCceEEEEec-CCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCc---eeeeEecccCCC-
Q 001535 843 DSYVMSATGGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKGHQKR- 917 (1058)
Q Consensus 843 g~~la~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~---~~~~~~~~h~~~- 917 (1058)
|.++++|.-..|+|||.....+...+. +....|+++.-+...|.++|+|..||.|++||.+.. ..+...+.|+..
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 444455445779999999887777665 344568888776657899999999999999998754 356778889887
Q ss_pred -eeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCe
Q 001535 918 -ITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 995 (1058)
Q Consensus 918 -V~~l~~s~d~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~ 995 (1058)
|..+.+-+.|- .|++|+.||.|++||++.......+........ .+..+++...++...+|+|+.+.|.||++...
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-Gs~lTal~VH~hapiiAsGs~q~ikIy~~~G~- 1335 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY-GSALTALTVHEHAPIIASGSAQLIKIYSLSGE- 1335 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc-CccceeeeeccCCCeeeecCcceEEEEecChh-
Confidence 99999998765 499999999999999998544443333322211 13589999999999999988799999998743
Q ss_pred eeeeeccCC----CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 001535 996 RIRQWTPQD----ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1040 (1058)
Q Consensus 996 ~~~~~~~~~----~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~ 1040 (1058)
.+..+.... ...+.+.|++|.|---++++|+.|.+|.||.-+.++
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 333222221 114678999999999999999999999999877654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-14 Score=137.52 Aligned_cols=239 Identities=10% Similarity=0.090 Sum_probs=183.5
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCC--CcEEEEe-c
Q 001535 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-L 482 (1058)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd-~ 482 (1058)
...+..+.|+.|...|..|+.|| -++|..+.-.... ........|.-+-|+. . ++|..+.+ +.+++.+ .
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSS--S--LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSS--S--LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccc--c--eeEEEecCCCceEEEEEcc
Confidence 34677788999999999999998 6788776543211 1112233455556664 3 44444444 4599999 7
Q ss_pred CCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC---CCcEEEEEEccCCCEEEEEecc
Q 001535 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTS 559 (1058)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~i~~i~~s~~~~~l~~~~~~ 559 (1058)
.+..+..+. ...+|.++.++. +.|+++-.+. |.+||+++.+...++... ...+.++++++.+.+++.-+.
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s- 149 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS- 149 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-
Confidence 777777665 456788888843 5676666555 999999998887766544 335677777777778887643
Q ss_pred CCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeeEeccCCCCCCCceEEee
Q 001535 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1058)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1058)
...|.|.+||..+-+.+..+..|.+ .+.+++|+++|..|+++++.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 150 -~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 150 -TTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 2478899999999999999999987 8999999999999999999887 799999999999988754444568899999
Q ss_pred CCCCEEEEEECCCcEEEEEccCC
Q 001535 639 KEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
|++.+|++.+..++|.+|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-14 Score=152.32 Aligned_cols=333 Identities=12% Similarity=0.092 Sum_probs=202.1
Q ss_pred EEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeE
Q 001535 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1058)
Q Consensus 511 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~ 590 (1058)
+++-..++.|.+.|..+.+....+.........+.++|||+++++++. ++.|.++|+.+++.+.++.... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--Ccce
Confidence 345667899999999998888888776655566889999999999874 7899999999999999987654 3567
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCCCceeeEeccCCC-----CCCCceEEeeCCCCEEEEEEC-CCcEEEEEccCCcc
Q 001535 591 VQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (1058)
Q Consensus 591 ~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~ 663 (1058)
+++++||+++++++ .++.+.++|.++.+.+..+...+. ...+..+..+|....++..-. .+.|.+.|......
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999876 789999999999999888764321 234567777887775555544 46776666544211
Q ss_pred ccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCccee
Q 001535 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1058)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~ 743 (1058)
...
T Consensus 163 ~~~----------------------------------------------------------------------------- 165 (369)
T PF02239_consen 163 LKV----------------------------------------------------------------------------- 165 (369)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred cce-----------------------------------------------------------------------------
Confidence 000
Q ss_pred eeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeec-cCeeEEeeeeccccCCCCcccccccceeeccCCCceee
Q 001535 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1058)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 822 (1058)
..+. .........|+|++++++++.. +..+-++|..+... +.....|....
T Consensus 166 ---------~~i~------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p~ 217 (369)
T PF02239_consen 166 ---------TTIK------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKPH 217 (369)
T ss_dssp ---------EEEE--------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSBE
T ss_pred ---------eeec------ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeecccccc
Confidence 0000 1123456788899988766544 56777777543221 11111121110
Q ss_pred e-eccCCCCCCCeeEEEEecCCCEEEEE-eCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEE----ECCCC
Q 001535 823 N-DVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----TEDST 896 (1058)
Q Consensus 823 ~-~~~~~~~~~~v~~~~~s~dg~~la~~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg----~~dg~ 896 (1058)
. ......|...-.--+.+..+...++. +.+.+.+||..+.+.++++...... .-+..+| +++++.+. ...++
T Consensus 218 ~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~ 295 (369)
T PF02239_consen 218 PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADT 295 (369)
T ss_dssp ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-
T ss_pred ccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCce
Confidence 0 00000122211111223334443222 3556778999999999999977666 7788899 89999887 45589
Q ss_pred EEEEEccCceeeeEecccC-CCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeceEEEe
Q 001535 897 IHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD--AQLCVWSIDTWEKRKSVTIH 956 (1058)
Q Consensus 897 v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~s~s~D--g~i~iwd~~~~~~~~~~~~~ 956 (1058)
|.++|.++.+.+..+.... ..+..+.|++||+++..+..+ +.|.+||..+.+.+..+...
T Consensus 296 v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~ 358 (369)
T PF02239_consen 296 VQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVP 358 (369)
T ss_dssp EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--
T ss_pred EEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEee
Confidence 9999999998887775333 358899999999976654443 37999999999988777643
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-17 Score=177.81 Aligned_cols=215 Identities=16% Similarity=0.238 Sum_probs=160.2
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC-cEEEE
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVW 480 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~-~i~iw 480 (1058)
+..|+...+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+++... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 77789999999999999999999999999999999998766 57799999999999999994 333333333 57799
Q ss_pred e--cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC----CCcEEEEEEccCCCEEE
Q 001535 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLF 554 (1058)
Q Consensus 481 d--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----~~~i~~i~~s~~~~~l~ 554 (1058)
+ ..+...++|.+ -.++.|+.. .+.-+.|+......+||+++.....++-.. ...-++..|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9 66666666654 245566433 234455555677889999998876653222 22347788999998887
Q ss_pred EEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCce
Q 001535 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1058)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 634 (1058)
- +| .+||++..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.+.....-. -..
T Consensus 1247 n-------dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc~ 1306 (1516)
T KOG1832|consen 1247 N-------DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QCA 1306 (1516)
T ss_pred e-------Cc--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ceE
Confidence 4 44 4699999888888776542 223569999999998876 89999999887765433 257
Q ss_pred EEeeCCCCEEEE
Q 001535 635 LRFSKEGNLLAV 646 (1058)
Q Consensus 635 v~~s~~~~~l~~ 646 (1058)
+.|+..|..+..
T Consensus 1307 VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYA 1318 (1516)
T ss_pred EEeccCccchhh
Confidence 788888776543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-14 Score=151.62 Aligned_cols=320 Identities=11% Similarity=0.133 Sum_probs=200.8
Q ss_pred CCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCC
Q 001535 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1058)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 641 (1058)
+++.|.+.|..+.+.+.++..... .-..+.++|||+++++++.||.|.++|+.+++.+..+.... ....+++++||
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~DG 89 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSPDG 89 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE--TT
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcCCC
Confidence 488999999999999999987554 33457899999999999999999999999999999887643 35789999999
Q ss_pred CEEEEEE-CCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCC
Q 001535 642 NLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1058)
Q Consensus 642 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1058)
++++++. ..+.+.++|.++. +..+.+.....
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~----------------------------------------------- 121 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETL-EPVKTIPTGGM----------------------------------------------- 121 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT---EEEEEE--EE-----------------------------------------------
T ss_pred CEEEEEecCCCceeEeccccc-cceeecccccc-----------------------------------------------
Confidence 9988775 5899999998775 22222211000
Q ss_pred CCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeec-cCeeEEeeeeccccC
Q 001535 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQN 799 (1058)
Q Consensus 721 ~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~ 799 (1058)
+. .....++.++..+|....++..-. .+.+.+-|....
T Consensus 122 -------------------------------------~~-~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--- 160 (369)
T PF02239_consen 122 -------------------------------------PV-DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--- 160 (369)
T ss_dssp --------------------------------------T-TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS---
T ss_pred -------------------------------------cc-cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc---
Confidence 00 002346677777887775555544 466555443211
Q ss_pred CCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEECCCceEEEEecC----CCC
Q 001535 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS----PPP 873 (1058)
Q Consensus 800 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~ 873 (1058)
..+....+. .........|+|++++++++. ++.|.++|.++++.+..+.. |..
T Consensus 161 ------------------~~~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 161 ------------------KNLKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp ------------------SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred ------------------cccceeeec---ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccc
Confidence 001111111 344566789999999988775 67899999999988776542 333
Q ss_pred CeeEE-------EEec-CCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEE----eCCCcEEE
Q 001535 874 ASTFL-------AFHP-QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS----GADAQLCV 941 (1058)
Q Consensus 874 ~i~~l-------~~s~-~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~----s~Dg~i~i 941 (1058)
+...+ .|.. ..+...++.-....+.+|+..+.+.++++....++ ..+..+|+++++... ...+.|.+
T Consensus 220 ~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~v 298 (369)
T PF02239_consen 220 PGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQV 298 (369)
T ss_dssp TEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEE
T ss_pred ccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEE
Confidence 33322 1211 02223322233346678898999999999877666 678889999999987 44588999
Q ss_pred EECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE---ECCeEEEEECCCCeeeeeec
Q 001535 942 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV---HETQLAIYDASKMERIRQWT 1001 (1058)
Q Consensus 942 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~---~d~~v~v~d~~~~~~~~~~~ 1001 (1058)
+|.++.+....+... .+ ..+..+.|++||+++.++ .++.|.+||..+.+.+..+.
T Consensus 299 iD~~tl~~~~~i~~~--~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 299 IDKKTLKVVKTITPG--PG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EECCGTEEEE-HHHH--HT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EECcCcceeEEEecc--CC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 999997544333211 11 237899999999988775 34589999999999988875
|
... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-16 Score=155.72 Aligned_cols=199 Identities=14% Similarity=0.207 Sum_probs=160.6
Q ss_pred eEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecc
Q 001535 835 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (1058)
Q Consensus 835 ~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~ 913 (1058)
.+++|+.||..++++. ||++|||+..+...+.....|...|.++.||| ||++|++-+.| ..+||++.++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899999999999998 99999999998888888888999999999999 99999999999 999999999977766552
Q ss_pred --cCCCeeEEEEcCCC-----CEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCe
Q 001535 914 --HQKRITGLAFSTSL-----NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 985 (1058)
Q Consensus 914 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~ 985 (1058)
-......+.|+.|+ ..++....-+.|+.||+..+..-..+......... ..+++++.|+||++++.| .||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEcCCCcEEEEeccCCc
Confidence 22345677888887 33344445567888888765542222222111111 689999999999999997 6999
Q ss_pred EEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001535 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 986 v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
|.++++.+.+++..... .|...|+.+.|+||.+++++.+.|.+..+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999888776654 4589999999999999999999999999987754
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-14 Score=147.94 Aligned_cols=571 Identities=12% Similarity=0.132 Sum_probs=343.2
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
+......|++|+.... ++|+|+.||.+++-.+.+...-. +.-.+.....-.....+.||.+.|.-+.|+.+.+.|
T Consensus 12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~----~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDL----NKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcc----cccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 3556788999999887 69999999999999887643211 111122223333445699999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeE--EeecccCCeeE
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF--NFEGHEAPVYS 499 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~h~~~v~~ 499 (1058)
-+...+|.|.||-+-.|...... .-....+.|.+++|+.||+ .+...-.||.|.+=..+|..+. .+++ .....
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--heccc
Confidence 99999999999999888755432 1234567899999999999 6777778888876555555442 2222 11234
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCc-------eE----EeeCCCCcEEEEEEc--------cCCCEEEEEeccC
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RV----DYDAPGHWCTTMLYS--------ADGSRLFSCGTSK 560 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-------~~----~~~~~~~~i~~i~~s--------~~~~~l~~~~~~~ 560 (1058)
+.|++ |...++.+-..|.+.++|.+..-. .. .+...+..+..+.|. ||...++++..
T Consensus 162 v~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-- 237 (1189)
T KOG2041|consen 162 VLWSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-- 237 (1189)
T ss_pred eeecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc--
Confidence 55644 557777888889999998653211 11 111222345555553 46777887763
Q ss_pred CCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeeEeccCCCCCC
Q 001535 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPN 631 (1058)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~ 631 (1058)
+|.+.+..-.+......+... -.+....|+++|..|+++|.+ +.|.+|. .-|+.+.+++.++. .
T Consensus 238 --nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~ 310 (1189)
T KOG2041|consen 238 --NGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--C 310 (1189)
T ss_pred --CceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--e
Confidence 666666544433322222221 245668999999999998743 2455555 36788888887765 6
Q ss_pred CceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCC
Q 001535 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1058)
Q Consensus 632 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1058)
|+.++|-..|-.+|.+- |+.|++=++......-. ++ ..+.+-..+.-+
T Consensus 311 It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy-~e-----------~TvVy~y~~~e~------------------- 358 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGY-IE-----------ETVVYVYQKEEL------------------- 358 (1189)
T ss_pred eeeeEEcCCceEEEEEe-cceEEEEeecccceEEE-ee-----------eEEEEEEccCCC-------------------
Confidence 89999988887777654 56787766654311000 00 001111111000
Q ss_pred CccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEe
Q 001535 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1058)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1058)
-...|..||..+....-+ .-....++++..+--.|+.-..+|.+.-+
T Consensus 359 ----------------------p~y~i~Fwdtk~nek~vK-----------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~ 405 (1189)
T KOG2041|consen 359 ----------------------PQYGIMFWDTKTNEKTVK-----------TVTHFENMAFYREHCVLINRQDDGVIPEY 405 (1189)
T ss_pred ----------------------cceEEEEEecccChhhhh-----------hhcceeehheecccEEEEeccccCCCcch
Confidence 002345666543221111 11223455666555555555556655544
Q ss_pred eeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEecC-
Q 001535 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS- 870 (1058)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~- 870 (1058)
+--.. .+ ......+.+. -|.. +.. .-..|.-.-..-++.+++.++...+.+|.....+....+.+
T Consensus 406 s~le~----~~---~~~~l~LCNS-IGT~----lD~--kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~ 471 (1189)
T KOG2041|consen 406 STLEN----RS---RVYFLQLCNS-IGTS----LDY--KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGV 471 (1189)
T ss_pred hhhhc----cc---ceEEEeeecc-cCCc----CCC--CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhh
Confidence 20000 00 0000000000 0100 000 11223333333478888999989999998765554333322
Q ss_pred --CCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001535 871 --PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948 (1058)
Q Consensus 871 --~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~ 948 (1058)
+...- |+- ...-+|+.|+++. .. ..++.|.+++|.+++.| .++|..+-..|.|.-+.+.++-
T Consensus 472 k~rkegr----~h~---Ddtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~ 535 (1189)
T KOG2041|consen 472 KIRKEGR----FHG---DDTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVV 535 (1189)
T ss_pred hhccccc----ccC---CCCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEeccee
Confidence 11111 322 1233456666542 12 35677889999999988 5788899999999999999876
Q ss_pred eeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECC---CCeeeeeeccCCCCCCCEEEEEEccCCCEEEE
Q 001535 949 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDAS---KMERIRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1058)
Q Consensus 949 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~---~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t 1024 (1058)
......+. ..+.++....+...+++- .-|.+.+.|+. +|..+..+...+ ...|+.+.|..|...+++
T Consensus 536 l~n~y~~n-------~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa~dNp~llA 606 (1189)
T KOG2041|consen 536 LTNSYPVN-------PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWAQDNPNLLA 606 (1189)
T ss_pred eeeccccC-------chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhccCCchHHh
Confidence 55544443 677889988888888874 56777777766 344444343333 678999999988887766
Q ss_pred EeCCCcEEEEeCC
Q 001535 1025 TFCDGNIGVFDAD 1037 (1058)
Q Consensus 1025 ~~~dg~i~iw~~~ 1037 (1058)
--+.-.+.|++-.
T Consensus 607 lmeKtrmyifrgn 619 (1189)
T KOG2041|consen 607 LMEKTRMYIFRGN 619 (1189)
T ss_pred hhhhceEEEecCc
Confidence 6555566666543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-13 Score=133.70 Aligned_cols=157 Identities=14% Similarity=0.252 Sum_probs=129.0
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEecCC---CCCeeEEEEecCCCcEEEEEE--CCCCEEEEEccC
Q 001535 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP---PPASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRV 904 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s~~~~~~lasg~--~dg~v~iwd~~~ 904 (1058)
....|.++.++ .+.|+++-.+.|+|||+++.+++.++..- ...+.++.+++ ++.+||.=+ ..|.|.+||+.+
T Consensus 86 fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 45667777774 55777777777999999999999888743 34466666666 666887543 468999999999
Q ss_pred ceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-E
Q 001535 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ-LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-H 982 (1058)
Q Consensus 905 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~ 982 (1058)
-+.+..+.+|.+++.+++|+++|.+|||+|..|+ |||+.+.+|+....++. |..+..|.+++|+||+.+|+++ +
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR----G~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR----GTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC----CceeeEEEEEEECCCCCeEEEecC
Confidence 9999999999999999999999999999999997 79999999987766543 3334788999999999999995 6
Q ss_pred CCeEEEEECCC
Q 001535 983 ETQLAIYDASK 993 (1058)
Q Consensus 983 d~~v~v~d~~~ 993 (1058)
.++|++|.++.
T Consensus 239 TeTVHiFKL~~ 249 (391)
T KOG2110|consen 239 TETVHIFKLEK 249 (391)
T ss_pred CCeEEEEEecc
Confidence 78899998764
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=168.37 Aligned_cols=286 Identities=14% Similarity=0.209 Sum_probs=217.9
Q ss_pred EeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEE
Q 001535 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (1058)
Q Consensus 533 ~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vw 612 (1058)
.+.+|...|.|+.|...|.++++++ .+..++||..+++.+.....||.+ .++.++.+.+..++++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgs----dd~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGS----DDRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecC----ccceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCceEEEE
Confidence 4556777899999999999999998 488999999999999999999998 78899999988999999999999999
Q ss_pred ECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccc
Q 001535 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1058)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 692 (1058)
.+.++.++..+..+ .+.|++++|+|-. +.+.||++++||..-. ....... +. .++
T Consensus 260 rl~~~~pvsvLrgh--tgavtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~pr-p~------------~~~---- 314 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGH--TGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPR-PL------------KFT---- 314 (1113)
T ss_pred ecCCCchHHHHhcc--ccceeeeccCccc----cCCCCCceEecccccc--ccccCCC-CC------------Ccc----
Confidence 99999999998855 5589999999964 7788999999998611 0000000 00 000
Q ss_pred cccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEE
Q 001535 693 VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY 772 (1058)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 772 (1058)
....+.++.|
T Consensus 315 ----------------------------------------------------------------------~~~~~~s~~~ 324 (1113)
T KOG0644|consen 315 ----------------------------------------------------------------------EKDLVDSILF 324 (1113)
T ss_pred ----------------------------------------------------------------------cccceeeeec
Confidence 1123445566
Q ss_pred ecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCC-CEEEEEe-
Q 001535 773 TNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVMSAT- 850 (1058)
Q Consensus 773 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~la~~~- 850 (1058)
..++..+.+++.|+.-..|.+.... | +...+.-+.++.|- .+.+++-
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~----------------~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLA---------------W----------------RSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred cccccccccccCCcccccchhhHhh---------------h----------------hccceEEEeccccccccceeeee
Confidence 6677777888888777776543211 1 11122222222222 2334443
Q ss_pred CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEE
Q 001535 851 GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNIL 930 (1058)
Q Consensus 851 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l 930 (1058)
+-.+.+|++.+|.+.+.+.+|...+..+.++|.+.++..+++.||...|||+-.|..++...-..+.+..-+||+||..+
T Consensus 374 ~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSI 453 (1113)
T ss_pred eeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceE
Confidence 67799999999999999999999999999999888888899999999999999987665544334667788999999999
Q ss_pred EEEeCCCcEEEEECCCCce
Q 001535 931 VSSGADAQLCVWSIDTWEK 949 (1058)
Q Consensus 931 ~s~s~Dg~i~iwd~~~~~~ 949 (1058)
+....-|.++|.....++.
T Consensus 454 ~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ecCCCCCceEEeccCCCcc
Confidence 9888889999988766554
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-12 Score=143.55 Aligned_cols=149 Identities=20% Similarity=0.307 Sum_probs=126.3
Q ss_pred EEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCe
Q 001535 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1058)
Q Consensus 350 v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 429 (1058)
+.++++.- ++++|+.-+.|++|++...+.. ..+.||.+.|.++.||-||+++++.|.|.+
T Consensus 139 ~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEEL-YIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEE-EEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcc
Confidence 34567766 5899999999999998721111 138999999999999999999999999999
Q ss_pred EEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeecccC-CeeEEeecccCCc
Q 001535 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-PVYSICPHHKENI 508 (1058)
Q Consensus 430 i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~ 508 (1058)
+++|++++++.... +.-+|+.+|+.+.|.|. .++|++.|.+.++|+.++..+..+.+|.. .|+.++..+ +.
T Consensus 199 iRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~ 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GV 270 (967)
T ss_pred eeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC--Cc
Confidence 99999999887763 45689999999999987 48999999999999988888888888864 588888754 45
Q ss_pred eEEEEEeeCCeEEEEecC
Q 001535 509 QFIFSTAIDGKIKAWLYD 526 (1058)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~ 526 (1058)
..+++++.|+.+++|++.
T Consensus 271 ~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred eEEEeeccCcchhhhhhh
Confidence 789999999999999874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=163.47 Aligned_cols=177 Identities=15% Similarity=0.169 Sum_probs=137.3
Q ss_pred EecCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCC-------CceEEeeCCCCcEEEEEEccCCCE
Q 001535 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-------GSRVDYDAPGHWCTTMLYSADGSR 552 (1058)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-------~~~~~~~~~~~~i~~i~~s~~~~~ 552 (1058)
|+.+|..+..+..|...|..++.++ +++.++++|+.||+|++|+.+.. ....++...+..+.++.+.+.+..
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 8889999999999999999998864 45689999999999999998642 233455667788999999999999
Q ss_pred EEEEeccCCCCceEEEEeCCCC-------ceeeeeecccCcc-eeEEEEcCC-CC-EEEEEeCCCcEEEEECCCCceeeE
Q 001535 553 LFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKS-NGVVQFDTT-QN-HFLAVGEDSQIKFWDMDNVNILTS 622 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~~~~~-i~~~~~~~~-~~-~l~~~~~dg~i~vwd~~~~~~~~~ 622 (1058)
+|+++ +||.|++.+++-. ...+....+..+. +..-++... +. .++.+...+.|..||.........
T Consensus 1113 ~Av~t----~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVST----KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEc----CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 99997 5999999988752 1112222222222 333344332 23 677888999999999998888777
Q ss_pred eccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
++..-..+.|++++.+|.+.++++|+..|.+.+||++-+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 766666668999999999999999999999999999765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-11 Score=125.34 Aligned_cols=238 Identities=14% Similarity=0.120 Sum_probs=153.0
Q ss_pred CcccEEEEEEecCcceEEEeeccC-eeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEec
Q 001535 763 TSSKVVRLLYTNSAVGLLALGSNG-VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg-~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1058)
+.+.|.-..+..++..++.+..|| .+-||+.. +++... +.. .-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr--~e~--~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKR--IEK--DLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEE--eeC--CccceEEEEEcC
Confidence 444566566666666788888887 77777643 333222 111 567899999999
Q ss_pred CCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCC----CEEEEEccCceeeeEecccCC
Q 001535 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----TIHIYNVRVDEVKSKLKGHQK 916 (1058)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg----~v~iwd~~~~~~~~~~~~h~~ 916 (1058)
||++++++. ...|.+.|+.+++....-+...+-|+.++|+| +++++|.+--+| .|+++|+..++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 57899999999987666666677899999999 999999988777 68999999988654433 334
Q ss_pred CeeEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceeceEEEecCCCCC---------------------------
Q 001535 917 RITGLAFSTSLNILVSSGA-------DAQLCVWSIDTWEKRKSVTIHIPAGKT--------------------------- 962 (1058)
Q Consensus 917 ~V~~l~~s~d~~~l~s~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------------------- 962 (1058)
.=.+-+|.||+++|..-+. |..+.=+.... ..+.+......+..
T Consensus 490 ~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~--vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~e 567 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQR--VSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVE 567 (668)
T ss_pred cccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEee--eccceEEEecCCCCChhhcCchhcCccccceehhhhccccc
Confidence 4457789999998876543 33332222211 11111111111110
Q ss_pred -----CCCceEEEEcCCCCEEEEE---------------ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEE
Q 001535 963 -----PTGDTRVQFNADQVRMLVV---------------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLV 1022 (1058)
Q Consensus 963 -----~~~v~~l~~s~d~~~l~~~---------------~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 1022 (1058)
.+...+++=-.+|+.++.+ ..|.+.+||+++.+.-. ....++++..|+|++.+
T Consensus 568 P~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e-------~k~nvss~rlS~D~s~i 640 (668)
T COG4946 568 PFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE-------YKDNVSSFRLSSDGSKI 640 (668)
T ss_pred ccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH-------HhcccceEEEcCCCCEE
Confidence 0111222222333222211 12445566655443211 14678999999999998
Q ss_pred EEEeCCCcEEEEeCCC
Q 001535 1023 FATFCDGNIGVFDADT 1038 (1058)
Q Consensus 1023 ~t~~~dg~i~iw~~~~ 1038 (1058)
.. -.||.++.++++.
T Consensus 641 lv-k~d~kl~~f~vek 655 (668)
T COG4946 641 LV-KLDGKLRLFDVEK 655 (668)
T ss_pred EE-EeCCeEEEEeccc
Confidence 88 7799999999976
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-15 Score=152.22 Aligned_cols=260 Identities=12% Similarity=0.102 Sum_probs=194.7
Q ss_pred cccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEE
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 480 (1058)
.|.+|.+.|..|.|+..|..|++|+.|..|.+||+..++....+ ..+|...|....|-|.....-+++++.||.|++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 37889999999999999999999999999999999988765532 3489999999999886544479999999999987
Q ss_pred e--cCCCee--EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEee---CCCC---cEEEEEEccCC
Q 001535 481 E--LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGH---WCTTMLYSADG 550 (1058)
Q Consensus 481 d--~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~---~i~~i~~s~~~ 550 (1058)
. .+|.+. ..+..|.++|..++.-|.. -..|.+++.|+.+.-+|++.......+. .+.. ...+++..|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7 555544 5567799999999987653 3678999999999999988765433222 2222 56788899976
Q ss_pred C-EEEEEeccCCCCceEEEEeCCCCce------eeeee-----cccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCC--
Q 001535 551 S-RLFSCGTSKDGDSFLVEWNESEGTI------KRTYA-----GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-- 616 (1058)
Q Consensus 551 ~-~l~~~~~~~~~~~~i~~wd~~~~~~------~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~-- 616 (1058)
. .+++++ .+..+++||.+.-.. +..+- ......|++++++.++.-+++...|-.|+++...-
T Consensus 294 t~~faVgG----~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 294 TNEFAVGG----SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred ccccccCC----hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 6 666766 388899999764321 12222 22223588999998888888888888999995433
Q ss_pred C----------ceeeE-eccCCCCCCCceEEe-eCCCCEEEEEECCCcEEEEEccCCccccccc
Q 001535 617 V----------NILTS-TDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1058)
Q Consensus 617 ~----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1058)
| ..+.. ++.|.....|..+-| -|...++++|++-|.|.||+-.++ +.++.+
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~M 432 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFM 432 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHh
Confidence 2 11222 455555566888876 478899999999999999998776 344333
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-14 Score=137.38 Aligned_cols=237 Identities=16% Similarity=0.164 Sum_probs=176.9
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
-..+|+|.+|++|+. .+|++.....|.||.......-. ..+.+..|...|++|.|+|....|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 356899999999999 68998888999999987655221 2345889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCee-----EEeecccCCe
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-----FNFEGHEAPV 497 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~h~~~v 497 (1058)
+|+.|..-+||....+...+....+..|...++++.|+|.+. .|++||.-..|.||-.+++.- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999955555555556778999999999999999 899999999999988333321 2334567789
Q ss_pred eEEeecccCCceEEEEEeeCCeEEEEecC-----CC-------------CceEEeeCCCCcEEEEEEccCCCEEEEEecc
Q 001535 498 YSICPHHKENIQFIFSTAIDGKIKAWLYD-----TM-------------GSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1058)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-----~~-------------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~ 559 (1058)
.+++|++ ++-+|++|+.|+..+++..- .. ....++...++.+..+.|+|+|..|+-.+.
T Consensus 150 ~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 9999988 55799999999999999641 11 111233356678999999999999998884
Q ss_pred CCCCceEEEEeCCCCc-eeeeeecccCcceeEEEEcCCCCEEEEEeCC
Q 001535 560 KDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1058)
Q Consensus 560 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1058)
|..+.+-|..... .+.......- +..++.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeecC-CceeecCCC
Confidence 8888888876553 3333332222 4555555443 344444444
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-12 Score=126.88 Aligned_cols=240 Identities=12% Similarity=0.159 Sum_probs=170.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeC-----CCcEEEEe-
Q 001535 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIKVWE- 481 (1058)
Q Consensus 408 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~-----d~~i~iwd- 481 (1058)
....++|+.|...+++|..+| .+||+.+--+... .-..+.+.+.-+...-..+.+.|+-|+. -..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 345599999999999998887 8999987532211 1112222222222222233323333332 24799999
Q ss_pred cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCC-CCceEEeeCCC--CcEEEEEEccCCCEEEEEec
Q 001535 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPG--HWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~--~~i~~i~~s~~~~~l~~~~~ 558 (1058)
...+++.++. ...+|.++.+.. + .|++ -..+.|.+|.... .+....+.... ....+++-..+...|+.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r--~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR--D--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC--C--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 8888888877 567899999854 2 3443 4578999998873 33333333322 23444444444455555443
Q ss_pred cCCCCceEEEEeCCCCce--eeeeecccCcceeEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeeEeccCCCCCCCceE
Q 001535 559 SKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1058)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~v 635 (1058)
..|.|++-|+...+. ...+..|.. .|.+++++.+|..+++++..|+ |+|||..+|+.+..+........|.|+
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 578999999887655 466777877 8999999999999999999887 799999999999998766556679999
Q ss_pred EeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+|||++.+||++|+.|++.|+.+...
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999998764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-14 Score=156.30 Aligned_cols=235 Identities=11% Similarity=0.074 Sum_probs=162.8
Q ss_pred CceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCCCCceEEeeC
Q 001535 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1058)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1058)
+..|++||..... .+.+..+.. .+....|+|+|+.|+.++.+ ..|++||+.+++........++ ...++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC
Confidence 4689999986655 445555544 67889999999999887643 4799999988865443333232 35789999
Q ss_pred CCCEEEEEE-CCCcEEEEEc--cCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCcccc
Q 001535 640 EGNLLAVTT-ADNGFKILAN--AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1058)
Q Consensus 640 ~~~~l~~~~-~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1058)
||+.|+.++ .+|.+.||.+ .++. ...+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~--~~~l------------------------------------------------ 287 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGT--PSQL------------------------------------------------ 287 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCC--eEee------------------------------------------------
Confidence 999888765 5777666643 2220 0000
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEee-ccCeeEEeeeec
Q 001535 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHR 795 (1058)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~v~vw~~~~ 795 (1058)
..+...+....|+|||+.|+.++ .+|...||+++.
T Consensus 288 --------------------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 288 --------------------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred --------------------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 00223456678999999877665 468888887643
Q ss_pred cccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEecCCCCCe
Q 001535 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAS 875 (1058)
Q Consensus 796 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i 875 (1058)
. .+.... +. +.. ...+|+|||++++..+...+.+||+.+++........ ..
T Consensus 324 ~--------------------~~~~~~--l~---~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~ 374 (429)
T PRK01742 324 S--------------------GGGASL--VG---GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LD 374 (429)
T ss_pred C--------------------CCCeEE--ec---CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CC
Confidence 1 111111 11 222 3578999999998888666777999988765333222 33
Q ss_pred eEEEEecCCCcEEEEEECCCCEEEEEcc--CceeeeEecccCCCeeEEEEcCC
Q 001535 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVR--VDEVKSKLKGHQKRITGLAFSTS 926 (1058)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d 926 (1058)
..+.|+| ||++|+.++.++.+.+|++. +|+.+..+.+|.+.+..++|||-
T Consensus 375 ~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 375 ESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 5678999 99999999999999988863 57888889889998999999984
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=133.46 Aligned_cols=230 Identities=18% Similarity=0.194 Sum_probs=177.3
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC
Q 001535 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1058)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~ 484 (1058)
..+|+|.+|++|+..+|++..+..|.||.....+.....+++..|...|+.++|+|..+ .|++|+.|..-++|. .++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 46999999999999999999999999999998887778889999999999999999998 799999999999999 354
Q ss_pred C---eeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE----EeeCCCCcEEEEEEccCCCEEEEEe
Q 001535 485 R---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 485 ~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~i~~i~~s~~~~~l~~~~ 557 (1058)
. +...+..++...+++.|+|. ++.+++|+..+.|.+|-++....-. .-......|.++.|.|++-++++|+
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~--enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPK--ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCc--CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 34556678889999999875 4689999999999999887655443 2233455789999999999999988
Q ss_pred ccCCCCceEEEEeC-----CC-------------CceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001535 558 TSKDGDSFLVEWNE-----SE-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1058)
Q Consensus 558 ~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 619 (1058)
. |+..+++.. ++ |++...+. ...+-+..+.|+|+|+.|+-.+.|+.+.+-|......
T Consensus 166 ~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 166 T----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred c----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 5 777777753 11 22333333 2234688899999999999999999999999876652
Q ss_pred -eeEeccCCCCCCCceEEeeCCCCEEEE
Q 001535 620 -LTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1058)
Q Consensus 620 -~~~~~~~~~~~~v~~v~~s~~~~~l~~ 646 (1058)
+..... . .-+..++.|-.+...++.
T Consensus 241 ~v~~~~~-~-~lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 241 RVQSVAT-A-QLPLLSVSWISENSVVAA 266 (361)
T ss_pred hccchhh-c-cCCceeeEeecCCceeec
Confidence 222222 1 135566666555443333
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-09 Score=129.28 Aligned_cols=539 Identities=9% Similarity=0.086 Sum_probs=299.2
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEE----EecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEE
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~dg~i~iw----d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 480 (1058)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +++....++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444432 11 2334567899999999999 56666667777764
Q ss_pred ecCCCeeE------------------------Eeec------------------------ccCCeeEEeecccCCceEEE
Q 001535 481 ELSGRKLF------------------------NFEG------------------------HEAPVYSICPHHKENIQFIF 512 (1058)
Q Consensus 481 d~~~~~~~------------------------~~~~------------------------h~~~v~~~~~~~~~~~~~l~ 512 (1058)
+.+-.++. .|.| +.+.-..++| .+||.+++
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFA 225 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFA 225 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEEE
Confidence 42222111 1111 1112233444 77999999
Q ss_pred EEee---C---CeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeec---c
Q 001535 513 STAI---D---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F 583 (1058)
Q Consensus 513 s~~~---d---g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~ 583 (1058)
+.+. . +.+|+|+-+ +....+-....+--.+++|-|.|++||+... ..+...|.+|. ++|-.-..|.. .
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence 8875 2 579999754 3332233333344567899999999998875 33456677777 34444444433 2
Q ss_pred cCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCCCCceEEeeCC-CCEEEEEECCCcEEEEEccC
Q 001535 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS--TDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAI 660 (1058)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~ 660 (1058)
....+..+.|++++..|+....|. |.+|...+....-+ +.... ...+..+.|+|. ...|...+.+|.+..++..-
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 334688899999999999987665 99999988764333 32222 224556999994 45677777778877766532
Q ss_pred CccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCc
Q 001535 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (1058)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 740 (1058)
.......... .-.++..--||.. +.+
T Consensus 381 ~v~~s~~~~~--------~D~g~vaVIDG~~----------------------------------------------lll 406 (928)
T PF04762_consen 381 DVSRSPGSSP--------NDNGTVAVIDGNK----------------------------------------------LLL 406 (928)
T ss_pred EEEecCCCCc--------cCceEEEEEeCCe----------------------------------------------EEE
Confidence 1000000000 0011222223332 222
Q ss_pred ceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCce
Q 001535 741 WQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (1058)
Q Consensus 741 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 820 (1058)
-.+....-+..+....+. ....|.+++|++++..+++...||.+.+|.+............... .......
T Consensus 407 Tpf~~a~VPPPMs~~~l~----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 477 (928)
T PF04762_consen 407 TPFRRAVVPPPMSSYELE----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLS-----SISLDSM 477 (928)
T ss_pred ecccccCCCchHhceEEc----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhh-----hcccccc
Confidence 222222222222222222 3468999999999999999999999999986654321100000000 0000000
Q ss_pred eeeeccCCCCCCCeeEEEEecCCCEEEEEeC----CcEEEEECCCce---EEEEecCCCCCeeEEEEecCCCcEEEEEEC
Q 001535 821 MANDVAGVNLEEAVPCIALSKNDSYVMSATG----GKISLFNMMTFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1058)
Q Consensus 821 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d----g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~lasg~~ 893 (1058)
...... .....+..++|..+..+++.... ..+.+++....+ .......-.+.+..+...+ +...++.-..
T Consensus 478 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~ 554 (928)
T PF04762_consen 478 DISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTN 554 (928)
T ss_pred cccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEEC
Confidence 000000 13456788889888877776663 358888874332 2333333345555555555 4444666777
Q ss_pred CCCEEEEEccCcee-eeEecccCCCeeEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEE
Q 001535 894 DSTIHIYNVRVDEV-KSKLKGHQKRITGLAFSTSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 969 (1058)
Q Consensus 894 dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 969 (1058)
+|.+...+...... +..+..--..+ .+....+.. .++.-+..|.+++ +. . .+. ..++++
T Consensus 555 ~G~v~~~~~~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la-------~~~tSF 617 (928)
T PF04762_consen 555 DGKVFQLSSDGELSQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA-------SNCTSF 617 (928)
T ss_pred CCEEEEeecCCCccccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe-------cCCceE
Confidence 99888666544321 12232221222 222222222 4444444454443 11 1 111 556666
Q ss_pred EEcCCCCEEEEEECCeEEEEECCC-CeeeeeeccCCC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 001535 970 QFNADQVRMLVVHETQLAIYDASK-MERIRQWTPQDA--LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC 1043 (1058)
Q Consensus 970 ~~s~d~~~l~~~~d~~v~v~d~~~-~~~~~~~~~~~~--~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~~~ 1043 (1058)
... +.-+|++.....+++.++.. ............ +...+..+ ..|..|+++--...=.|..++.|.+..
T Consensus 618 ~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~vp~~~~vVLQmPRGNLEt 690 (928)
T PF04762_consen 618 AVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTAVPSDTSVVLQMPRGNLET 690 (928)
T ss_pred EEE-cCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---ccCCEEEEEeCCCceEEEEcCCCchhh
Confidence 663 33344445677788888871 111111110000 01223333 357778877655555666887776644
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-13 Score=131.97 Aligned_cols=259 Identities=11% Similarity=0.118 Sum_probs=164.8
Q ss_pred cccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCC
Q 001535 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1058)
Q Consensus 764 ~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1058)
...|.+++|-|.+...++.+-.+-|.+|..+.... ....++.. .+ .....+...+| ..|+++++.+||
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln-------~~r~~~~~--s~--~~~qvl~~pgh-~pVtsmqwn~dg 207 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLN-------ANRNIRMM--ST--HHLQVLQDPGH-NPVTSMQWNEDG 207 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCcccc-------cccccccc--cc--cchhheeCCCC-ceeeEEEEcCCC
Confidence 34688999999877777777777889997653211 00000000 00 01111222223 789999999999
Q ss_pred CEEEEEe--CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEcc-CceeeeEecccCCCeeE
Q 001535 844 SYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKSKLKGHQKRITG 920 (1058)
Q Consensus 844 ~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~-~~~~~~~~~~h~~~V~~ 920 (1058)
..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..++-|+..++|... +.... .+....+.|..
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~e-rw~lgsgrvqt 285 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKE-RWILGSGRVQT 285 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceec-ceeccCCceee
Confidence 9999998 56799999999877655545567789999999 99999999999999999544 33332 33334569999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eceEEEe-------cCCCCCCCCceEEEEcCCCCEEEEEE
Q 001535 921 LAFSTSLNILVSSGADAQLCVWSIDTWEK-----------RKSVTIH-------IPAGKTPTGDTRVQFNADQVRMLVVH 982 (1058)
Q Consensus 921 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~-----------~~~~~~~-------~~~~~~~~~v~~l~~s~d~~~l~~~~ 982 (1058)
-+|+|+|++|+.+.. |.-++|.+..... ...+... .....-.+++.+++|.|.|.+||+..
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999997765432 2233443321100 0011111 11111127889999999999999963
Q ss_pred CC---------eEEEEECCCCeeeeeeccCCCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCC
Q 001535 983 ET---------QLAIYDASKMERIRQWTPQDALSAPISCAVYSC---NSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 983 d~---------~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~---dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
.+ -|.+||....-.+.......-.......+.|+| +|.+|.++=.-|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 22 266788776554444322211133355667765 56777777778888888773
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=132.04 Aligned_cols=246 Identities=13% Similarity=0.212 Sum_probs=175.5
Q ss_pred ecCCCcEEEEEeecCCC----eEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC
Q 001535 341 LHQGSTVISMDFHPSHQ----TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1058)
Q Consensus 341 ~~h~~~V~~v~~sp~g~----~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1058)
+.|.-+++.+-|.|+.. .+||+. +..++||.+...+...... ..+....-..+.+++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhccCcccccCCccccccccc
Confidence 67999999999999862 367774 4589999997532211100 0011112344678999999988
Q ss_pred -CCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCe---eEEee
Q 001535 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFE 491 (1058)
Q Consensus 417 -dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~---~~~~~ 491 (1058)
|-++|.+++-|-++.|||++++..-.....|-+|...|.+++|...+.. .|++.|.||+|+++| ..-.- +..-.
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 7789999999999999999998442223357799999999999998777 899999999999999 33221 22222
Q ss_pred cccCCeeEEeecccCCceEEEEEeeC-CeEEEEecCCCCc-eEEeeCCCCcEEEEEEccCC-CEEEEEeccCCCCceEEE
Q 001535 492 GHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVE 568 (1058)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~-~~~~~~~~~~i~~i~~s~~~-~~l~~~~~~~~~~~~i~~ 568 (1058)
....+...++|+.. |-+++++-..| ..|.+.|++.... ...+..|...|+.++|.|.. ..|.++| .|....+
T Consensus 240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG----DD~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG----DDCQALI 314 (364)
T ss_pred CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC----CcceEEE
Confidence 22456778888754 55677776665 5688999987654 45788999999999999965 5677777 4889999
Q ss_pred EeCCCCce------eeeeecccCcceeEEEEcC-CCCEEEEEeCC
Q 001535 569 WNESEGTI------KRTYAGFRKKSNGVVQFDT-TQNHFLAVGED 606 (1058)
Q Consensus 569 wd~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 606 (1058)
||+...-. +..+. .+..|+.+.|++ .+.+++++...
T Consensus 315 WDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred EecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEecC
Confidence 99875322 22222 223688899986 45677666543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=143.53 Aligned_cols=197 Identities=15% Similarity=0.106 Sum_probs=149.7
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeE
Q 001535 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1058)
Q Consensus 410 ~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~ 488 (1058)
.+++|+++|..|++|+.||++|||++.....+. ....|.+.|.++.|+|||+ +|++-+.| ..+||+ .+|..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEeccCchhh
Confidence 789999999999999999999999987765544 4668999999999999999 89999999 999999 8897776
Q ss_pred Eeec--ccCCeeEEeecccCCce---EEEEEeeCCeEEEEecCCCCc-----eEEeeCCCCcEEEEEEccCCCEEEEEec
Q 001535 489 NFEG--HEAPVYSICPHHKENIQ---FIFSTAIDGKIKAWLYDTMGS-----RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 489 ~~~~--h~~~v~~~~~~~~~~~~---~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 558 (1058)
.... .......+.|..++++. .++....-+.|+.|++..... ..........|+++++++||++++.++.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 6542 22334555665433222 222233345666665543222 1122223447999999999999999984
Q ss_pred cCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001535 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1058)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 616 (1058)
+|.|-+++..+.+.++-.+..+...|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 302 ----dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 ----DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ----CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 889999999999888877766666899999999999999988888887776543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=147.31 Aligned_cols=239 Identities=14% Similarity=0.170 Sum_probs=165.2
Q ss_pred ecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC--CC
Q 001535 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1058)
Q Consensus 341 ~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 418 (1058)
.||++-|+|++|+.||. +|++||.|-.+.|||.-..+.++ .+-.||.+.|.|+.|-| +.
T Consensus 47 ~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh------------------sI~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH------------------SISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred ccccceecceeecCCCC-EEeecCCcceEEeecchhcceee------------------eeecccccceeEEeeeccCCC
Confidence 47999999999999999 79999999999999998666554 24679999999999999 57
Q ss_pred CEEEEEeCCCeEEEEEecCCC-------cceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC-CeeE-
Q 001535 419 NYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLF- 488 (1058)
Q Consensus 419 ~~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~-~~~~- 488 (1058)
+.+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .+.++++||+|+-+| .+. .+-.
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcc
Confidence 789999999999999998421 12233346689999999999999966 899999999999999 432 2211
Q ss_pred --------EeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEE-----eeCCCCcEEEEE-EccCCCEEE
Q 001535 489 --------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-----YDAPGHWCTTML-YSADGSRLF 554 (1058)
Q Consensus 489 --------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-----~~~~~~~i~~i~-~s~~~~~l~ 554 (1058)
.+...--...++.++|.. ..+|++|+.|-..++||.+....... ...+.....|+. |+|.+-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl--- 262 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL--- 262 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---
Confidence 111122345678888764 47999999999999999643221110 000111111221 222211
Q ss_pred EEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEe
Q 001535 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1058)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 623 (1058)
.. .+ +...... ..++-+.|+|+|..|++.-..-.|+++|+..++....+
T Consensus 263 -kn----~~----------gn~~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 263 -KN----SQ----------GNLDRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred -cC----cc----------cccccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 00 01 1000000 13556889999988877666668999999887765544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-12 Score=128.34 Aligned_cols=285 Identities=14% Similarity=0.175 Sum_probs=184.6
Q ss_pred CCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC-CCEEE
Q 001535 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVG 422 (1058)
Q Consensus 344 ~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~la 422 (1058)
+..+..++|++.-- -+|++..|-+|++||-.. +.... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceee
Confidence 34678899999544 478888999999999765 22111 01123568999999995 56778
Q ss_pred EEeCCCeEEEEEecCCC-cce----------eeeeecccccCeEEEEeecCCCeeEEEEEeC-CCcEEEEe-cCCCeeEE
Q 001535 423 VAFTKHLIQLYSYAGSN-DLR----------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFN 489 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~-~~~----------~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd-~~~~~~~~ 489 (1058)
+|+..| |++|...... .-+ ++..-.+| .+|++|.|.+||. .+++++. |..|.||| .+|..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 887766 9999765221 111 11123355 6899999999999 6777765 56899999 77766544
Q ss_pred eecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEE
Q 001535 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1058)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1058)
.....+.+.-+.|+| |+++|+.+..|+..++|.....-.........+.|...+|+|+|++|+.... +...++-.
T Consensus 234 ~~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEE
Confidence 434456688889976 6689999999999999965544333344445558999999999998887663 23333222
Q ss_pred eCCC--Cc-----------eeeeee------c--ccCcceeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCcee
Q 001535 570 NESE--GT-----------IKRTYA------G--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNIL 620 (1058)
Q Consensus 570 d~~~--~~-----------~~~~~~------~--~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~ 620 (1058)
.... +. ++..+. + .-.+...+++|.|.|.++++.-.. +.|.+||...--.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 1111 00 011111 1 012356789999999999986533 34667776654443
Q ss_pred eEe--ccCCCCCCCceEEeeC---CCCEEEEEECCCcEEEEEc
Q 001535 621 TST--DAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 621 ~~~--~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~ 658 (1058)
... ...++. .-..++|+| ++.+|.++=..|.+.-|.+
T Consensus 389 els~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 389 ELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 332 111111 235677776 6777877777787777665
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-10 Score=119.14 Aligned_cols=504 Identities=13% Similarity=0.132 Sum_probs=278.9
Q ss_pred ceeecCCCCcccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEE----E--eccceEEEEEccCCCccccccceeecc
Q 001535 317 EVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----G--SSNGEITLWELAMRDRLVSKPFKIWDM 390 (1058)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~----g--s~dg~i~iwd~~~~~~~~~~~~~~~~~ 390 (1058)
++.|+.-++ +|+..-......+...|-+-|+-..|+|||++++.+ | ...+.+.+.+.+.|+..+.
T Consensus 52 ~IiFt~~Dd-lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-------- 122 (668)
T COG4946 52 RIIFTCCDD-LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-------- 122 (668)
T ss_pred EEEEEechH-HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE--------
Confidence 344544333 788777778888888899999999999999975442 2 2234566666677765331
Q ss_pred cccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeE----EEEEecCCCc-ceeeeeecccccCeEEEEeecCCCe
Q 001535 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI----QLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKL 465 (1058)
Q Consensus 391 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i----~iwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~d~~~ 465 (1058)
..+ | ...-.-.-|+|||+.|++...-.-. .+|.+..... .. .-.-++.+.+.+- ||.
T Consensus 123 ---------Tyf-G-r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-----~LnlGpathiv~~-dg~- 184 (668)
T COG4946 123 ---------TYF-G-RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-----PLNLGPATHIVIK-DGI- 184 (668)
T ss_pred ---------EEe-c-cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-----eccCCceeeEEEe-CCE-
Confidence 112 2 1222235699999999876443222 2333332111 11 1123445555553 342
Q ss_pred eEEEEEeCCC------------cEEEEe--cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCce
Q 001535 466 LCVVTCGDDK------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1058)
Q Consensus 466 ~~l~s~~~d~------------~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 531 (1058)
++.|-.-- .=++|- ..|+....+..-.+.|.+-.+. .++..+....||.=.+|..+-...-
T Consensus 185 --ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkD 259 (668)
T COG4946 185 --IVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKD 259 (668)
T ss_pred --EEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCch
Confidence 33332111 224565 3332333333333333332221 1123333445555455544332222
Q ss_pred EEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeec---c---cC-cceeEE----EEcC-CCCE
Q 001535 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RK-KSNGVV----QFDT-TQNH 599 (1058)
Q Consensus 532 ~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~-~~i~~~----~~~~-~~~~ 599 (1058)
......-..-.+-..+.||+.++... .|.|++||..+.++...--+ . .. ..+.-+ .|++ +|.+
T Consensus 260 lrrHTnFtdYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ 334 (668)
T COG4946 260 LRRHTNFTDYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDY 334 (668)
T ss_pred hhhcCCchhccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcE
Confidence 21111111233334568999998764 67799999887654432111 1 00 011111 1333 4677
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCC-cEEEEEccCCccccccccCCCcccccC
Q 001535 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRT 678 (1058)
Q Consensus 600 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (1058)
++..+. |+..+.+...+-.++. ++...|.-..+..+++-++.|..|| .+-|++..++.. +.+
T Consensus 335 ia~VSR-GkaFi~~~~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--kr~---------- 397 (668)
T COG4946 335 IALVSR-GKAFIMRPWDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--KRI---------- 397 (668)
T ss_pred EEEEec-CcEEEECCCCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE--EEe----------
Confidence 776664 5777777665554443 2233577777777888899999998 888998876521 000
Q ss_pred cccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEec
Q 001535 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1058)
Q Consensus 679 ~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1058)
T Consensus 398 -------------------------------------------------------------------------------- 397 (668)
T COG4946 398 -------------------------------------------------------------------------------- 397 (668)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEE
Q 001535 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1058)
Q Consensus 759 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1058)
...-+.|.++..+++|+.++++.....+.+.|++++ ......- ...+-|+.++
T Consensus 398 --e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng----------------------nv~~idk---S~~~lItdf~ 450 (668)
T COG4946 398 --EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG----------------------NVRLIDK---SEYGLITDFD 450 (668)
T ss_pred --eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC----------------------CeeEecc---cccceeEEEE
Confidence 013457888999999998888887777777766543 2221111 1456799999
Q ss_pred EecCCCEEEEEe-CC----cEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEE-------CCCCEEEEEcc--C
Q 001535 839 LSKNDSYVMSAT-GG----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-------EDSTIHIYNVR--V 904 (1058)
Q Consensus 839 ~s~dg~~la~~~-dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~-------~dg~v~iwd~~--~ 904 (1058)
|+|+++++|.+- +| .|+++|+..++....-. ..+-=.+-+|.| ++++|..-+ .|..+.=+... +
T Consensus 451 ~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~RsLdPs~Drv~fnf~f~~vs 528 (668)
T COG4946 451 WHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSARSLDPSNDRVIFNFSFQRVS 528 (668)
T ss_pred EcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEeccccCCCCCeeEEEEEEeeec
Confidence 999999999986 54 49999999887654432 333345678888 888776544 23322222211 1
Q ss_pred ceeeeEe------------------------cc----------cCCCeeEEEEcCCCCEEE-E-------------EeCC
Q 001535 905 DEVKSKL------------------------KG----------HQKRITGLAFSTSLNILV-S-------------SGAD 936 (1058)
Q Consensus 905 ~~~~~~~------------------------~~----------h~~~V~~l~~s~d~~~l~-s-------------~s~D 936 (1058)
..-+..+ .+ ..+.-.+++=..+|+.+. + +-.-
T Consensus 529 kPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~k 608 (668)
T COG4946 529 KPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEK 608 (668)
T ss_pred cceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCcc
Confidence 0000000 00 001111111112222111 1 1223
Q ss_pred CcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCC
Q 001535 937 AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASK 993 (1058)
Q Consensus 937 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~ 993 (1058)
|.+.+||+++.+..... ..++++..|+|++.+++-.|+++++++++.
T Consensus 609 G~l~~ydletkk~~e~k----------~nvss~rlS~D~s~ilvk~d~kl~~f~vek 655 (668)
T COG4946 609 GRLEKYDLETKKVEEYK----------DNVSSFRLSSDGSKILVKLDGKLRLFDVEK 655 (668)
T ss_pred ceEEEEecchhhHHHHh----------cccceEEEcCCCCEEEEEeCCeEEEEeccc
Confidence 56666777664322111 778999999999999998999999999875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=145.93 Aligned_cols=239 Identities=10% Similarity=0.085 Sum_probs=156.5
Q ss_pred ceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeC---CCeEEEEEecCCCccee
Q 001535 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQ 443 (1058)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~ 443 (1058)
..|.+||........ +..+...+.+.+|||||+.||..+. +..|.+||+.+++...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888876543321 4446678999999999999987642 4579999998875322
Q ss_pred eeeecccccCeEEEEeecCCCeeEEEEEeCCC--cEEEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEeeC-CeE
Q 001535 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GKI 520 (1058)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i 520 (1058)
+....+.+..++|+|||+. ++++.+.++ .|++||..+..+..+..+...+...+|+| ||+.|+..+.+ +..
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 2223334557899999995 233334455 58899943334455555555677888866 66777666653 455
Q ss_pred EEE--ecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCC
Q 001535 521 KAW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1058)
Q Consensus 521 ~~w--d~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1058)
.+| |+.++.. ..+...........|+|||++++..+.. ++...|.+||+.+++... +.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC
Confidence 555 5544433 3334444456678999999999887642 234578999998886543 33221 233578999999
Q ss_pred EEEEEeCCCc---EEEEECCCCceeeEeccCCCCCCCceEEeeCC
Q 001535 599 HFLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 599 ~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1058)
.|+.++.++. ++++++ +|.....+..+ ...+...+|+|-
T Consensus 387 ~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~--~~~~~~p~Wsp~ 428 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVST-DGRFKARLPAT--DGQVKFPAWSPY 428 (429)
T ss_pred EEEEEEcCCCceEEEEEEC-CCCCeEECccC--CCCcCCcccCCC
Confidence 9999887654 777787 45545555433 335788888873
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-11 Score=136.57 Aligned_cols=194 Identities=16% Similarity=0.191 Sum_probs=149.2
Q ss_pred cEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCc-----ceEEEEECCCCCE
Q 001535 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-----SVSRVAWSPDGNY 420 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~ 420 (1058)
.|....+.-+.+ .++.++.+..+.|||...+...... .+.. ...-+-++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i--------------------~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI--------------------QSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhc--------------------CCCceEEEEeEEEEeccCcEEE
Confidence 444455555556 4788888999999999876554320 1111 2223456788889
Q ss_pred EEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeE-EeecccCCee
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVY 498 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~-~~~~h~~~v~ 498 (1058)
+++|+.-+.|.+|+....+... .+.+|.+.|.++.|+.||. ++++.|+|.++++|+ .+++... ..-+|+.+|+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 9999999999999988332222 4789999999999999999 899999999999999 6666655 7788999999
Q ss_pred EEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC-CCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1058)
.++|.+. .+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++ .|+.+++||+...
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g----~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGG----NDSTLKLWDLNGR 290 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeec----cCcchhhhhhhcc
Confidence 9999763 8999999999999976543333 45444 44789999988888888888 4999999997653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=141.58 Aligned_cols=117 Identities=22% Similarity=0.411 Sum_probs=104.8
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeee
Q 001535 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1058)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1058)
...|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||++|++|++|--|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 34688899999999999999 99999999999998888877778899999999 99999999999999999999999999
Q ss_pred EecccCCCeeEEEEcC-------------------------------C----C-------------CEEEEEeCCCcEEE
Q 001535 910 KLKGHQKRITGLAFST-------------------------------S----L-------------NILVSSGADAQLCV 941 (1058)
Q Consensus 910 ~~~~h~~~V~~l~~s~-------------------------------d----~-------------~~l~s~s~Dg~i~i 941 (1058)
.-++|+.-|+.|+|.| + + -++.|.+.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 1 1 15778899999999
Q ss_pred EECCCCc
Q 001535 942 WSIDTWE 948 (1058)
Q Consensus 942 wd~~~~~ 948 (1058)
||+..-.
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9997643
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-12 Score=121.80 Aligned_cols=240 Identities=15% Similarity=0.209 Sum_probs=155.0
Q ss_pred cEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEE-EeCC------CcEEEE
Q 001535 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGED------SQIKFW 612 (1058)
Q Consensus 540 ~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d------g~i~vw 612 (1058)
...+++|+.|...++++. +.-.++|+.+--+.......+..+ ...+..--..++++. ||.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~~~~~G-~~~veMLfR~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQFIDGG-FKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEe-----cCceEEEecCchhhhhhhccccCc-hhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence 345589999999998886 666889987754332222222221 111111112345444 3332 479999
Q ss_pred ECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccc
Q 001535 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1058)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 692 (1058)
|=...+++..+.... +|.+|.+.++ .+++.- .+.|++|...+..+.+..++.... |.
T Consensus 81 DD~k~~~i~el~f~~---~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N-------------Pk---- 137 (346)
T KOG2111|consen 81 DDLKERCIIELSFNS---EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-------------PK---- 137 (346)
T ss_pred ecccCcEEEEEEecc---ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-------------CC----
Confidence 977777777776543 6899999877 444444 568999998866444443332110 11
Q ss_pred cccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEE
Q 001535 693 VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY 772 (1058)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 772 (1058)
.+.++.-
T Consensus 138 -------------------------------------------------------------------------GlC~~~~ 144 (346)
T KOG2111|consen 138 -------------------------------------------------------------------------GLCSLCP 144 (346)
T ss_pred -------------------------------------------------------------------------ceEeecC
Confidence 1111111
Q ss_pred ecCcceEEEeec-cCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-
Q 001535 773 TNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT- 850 (1058)
Q Consensus 773 s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~- 850 (1058)
+.+...|+.-|. -|.|+|-|+...... . ...+.. |...|.|++++.+|.++|+++
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~-------------------~--p~~I~A--H~s~Iacv~Ln~~Gt~vATaSt 201 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPN-------------------A--PSIINA--HDSDIACVALNLQGTLVATAST 201 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcC-------------------C--ceEEEc--ccCceeEEEEcCCccEEEEecc
Confidence 112222333333 467777765432211 0 011222 999999999999999999999
Q ss_pred CCc-EEEEECCCceEEEEecCC--CCCeeEEEEecCCCcEEEEEECCCCEEEEEccCc
Q 001535 851 GGK-ISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1058)
Q Consensus 851 dg~-i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~ 905 (1058)
.|+ |+|||..+|+.+.++... ...|.|++||| +..+||+.|+.|+++|+.+...
T Consensus 202 kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecC
Confidence 787 999999999999998743 34699999999 9999999999999999998753
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-12 Score=144.78 Aligned_cols=223 Identities=12% Similarity=0.035 Sum_probs=152.9
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeC---CCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCc--
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 476 (1058)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 5568889999999999999998764 468999999887643 24556677889999999995 3456666665
Q ss_pred EEEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEee-CC--eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEE
Q 001535 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1058)
Q Consensus 477 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 553 (1058)
|++||..+..+..+..+.......+|+| ||+.++..+. +| .|.+||+..+... .+......+....|+|||+.|
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEE
Confidence 7777854555566776776677788866 6677776653 33 5777787654433 333334456678899999999
Q ss_pred EEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEeccCC
Q 001535 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDNVNILTSTDAEG 627 (1058)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~ 627 (1058)
+..... .+...|.+||+.++.. +.+... ..+....|+|||+.|+..+.+ ..++++|+..+.. ..+...+
T Consensus 349 a~~~~~-~~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~ 423 (435)
T PRK05137 349 AFTKQG-GGQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG 423 (435)
T ss_pred EEEEcC-CCceEEEEEECCCCce-EeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC
Confidence 887642 2345789999865543 333321 135568899999998876542 3688889876654 3443222
Q ss_pred CCCCCceEEeeCC
Q 001535 628 GLPNLPRLRFSKE 640 (1058)
Q Consensus 628 ~~~~v~~v~~s~~ 640 (1058)
.+...+|+|-
T Consensus 424 ---~~~~p~Wsp~ 433 (435)
T PRK05137 424 ---DASDPAWSPL 433 (435)
T ss_pred ---CccCcccCCC
Confidence 3566777763
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-12 Score=136.94 Aligned_cols=283 Identities=14% Similarity=0.150 Sum_probs=204.8
Q ss_pred EeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCC--CcceEEEEECC
Q 001535 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSP 416 (1058)
Q Consensus 339 ~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp 416 (1058)
.-|.|...-+.|..||||+|++|+|..--.|++||+..-... +..| ...|.-.-.|-
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------------------FERhlDae~V~feiLsD 104 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------------------FERHLDAEVVDFEILSD 104 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee---------------------eeecccccceeEEEecc
Confidence 345688888999999999999999999999999999764332 2334 33455555666
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccC
Q 001535 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1058)
Q Consensus 417 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~ 495 (1058)
|-..++.-..|.+|.+-.... ..... .+. ..-.+++++.-.- -|+.++....|+-.+ ..|+-+..+....+
T Consensus 105 D~SK~v~L~~DR~IefHak~G-~hy~~--RIP---~~GRDm~y~~~sc--Dly~~gsg~evYRlNLEqGrfL~P~~~~~~ 176 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKYG-RHYRT--RIP---KFGRDMKYHKPSC--DLYLVGSGSEVYRLNLEQGRFLNPFETDSG 176 (703)
T ss_pred chhhheEeecCceeeehhhcC-eeeee--ecC---cCCccccccCCCc--cEEEeecCcceEEEEccccccccccccccc
Confidence 666666677788876654322 11110 111 1234455554444 245555566788889 99999999988889
Q ss_pred CeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCC-----------CcEEEEEEccCCCEEEEEeccCCCCc
Q 001535 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-----------HWCTTMLYSADGSRLFSCGTSKDGDS 564 (1058)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----------~~i~~i~~s~~~~~l~~~~~~~~~~~ 564 (1058)
.++++.+++. ..+|++|+.+|.|.+||.+.......+.... ..|+++.|+.+|-.+++|++ .|
T Consensus 177 ~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G 250 (703)
T KOG2321|consen 177 ELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TG 250 (703)
T ss_pred cceeeeecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CC
Confidence 9999998664 3689999999999999998766554433221 15999999999999999985 89
Q ss_pred eEEEEeCCCCceeeeeecccCcceeEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCC
Q 001535 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1058)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 642 (1058)
.+.+||+++.+++..-.....-+|..+.|.+.+ +.++ ......++|||-.+|+....+.... .++.+++-|++.
T Consensus 251 ~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~sG 326 (703)
T KOG2321|consen 251 SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV-SMDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGSG 326 (703)
T ss_pred cEEEEEcccCCceeecccCCccceeeecccccCCCceEE-ecchHHhhhcccccCCceeeccccC---CcCceeeecCCc
Confidence 999999999887765544444467778886653 3344 3455689999999999988886533 589999999999
Q ss_pred EEEEEECCCcEEEEEccC
Q 001535 643 LLAVTTADNGFKILANAI 660 (1058)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~ 660 (1058)
+++++-.++.+..|=+..
T Consensus 327 m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIPS 344 (703)
T ss_pred eEEEecCCCcceeEEccc
Confidence 999999988777765543
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=132.15 Aligned_cols=171 Identities=18% Similarity=0.226 Sum_probs=133.0
Q ss_pred cchHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcC---------HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhhH
Q 001535 3 SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN---------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIF 73 (1058)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1058)
...+|+.|||++||...||.++|..+.+|+||... -..+|.+|..|+-++|++.++.+.+.--+.... +.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~-l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE-LF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh-HH
Confidence 45789999999999999999999999999999762 457999999999999999999995443232233 89
Q ss_pred HHHHHhHHhHhhhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhccc-CCchHHHHHHHHHHHhhcc
Q 001535 74 FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKY-GDTKTARGIMLIELKKLIE 152 (1058)
Q Consensus 74 ~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~r~~l~~~l~~~~~ 152 (1058)
|.+++|+++||+..+..++|++|+|.++.|+...+++.++.|...|.+--++.....+-. -=....|.++++.+.+.|-
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL 182 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAIL 182 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888899999888876555432221100 0034568889988887764
Q ss_pred cCcccccccCCCCCC-chHHHHHHHHHHHHHH
Q 001535 153 ANPLFRDKLAFPTLK-SSRLRTLINQSLNWQH 183 (1058)
Q Consensus 153 ~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q~ 183 (1058)
...- .+ .++|..|++..++.|.
T Consensus 183 ~~~~---------~~~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 183 ASQE---------HESEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHhc---------ccccchHHHHHHHHHHHHH
Confidence 4221 11 3478888877666663
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=146.01 Aligned_cols=225 Identities=14% Similarity=0.121 Sum_probs=150.4
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEE
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 478 (1058)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577789999999999999987643 459999999886432 3334456678999999995 344667788767
Q ss_pred EEe--cCCCeeEEeecccCCeeEEeecccCCceEEEEEee-CCeEEEEecCCCC-ceEEeeCCCCcEEEEEEccCCCEEE
Q 001535 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLF 554 (1058)
Q Consensus 479 iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~-~~~~~~~~~~~i~~i~~s~~~~~l~ 554 (1058)
||. ..+.....+..+........|++ ||+.|+..+. +|...+|.++... ....+...+.......|+|||++++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 766 55555667766666667778865 6677766553 5677777664322 2222223333445678999999999
Q ss_pred EEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeeEeccCCCCCC
Q 001535 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPN 631 (1058)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~ 631 (1058)
..+.. .+...|.+||+.+++........ ......|+|+|+.|+.++.++ .+++.+. ++.....+..+. +.
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~--g~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG--GD 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC--CC
Confidence 77642 12347999999888755433221 234678999999998877443 4666676 455555554332 24
Q ss_pred CceEEeeCC
Q 001535 632 LPRLRFSKE 640 (1058)
Q Consensus 632 v~~v~~s~~ 640 (1058)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 677788773
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-14 Score=144.25 Aligned_cols=287 Identities=15% Similarity=0.200 Sum_probs=216.9
Q ss_pred CcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEE
Q 001535 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1058)
Q Consensus 345 ~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1058)
-....+.++.+|++ ++.|+..|.|..+|+.+++...... -...|.++.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh
Confidence 35678899999996 5667789999999999988765321 23478899999999999988
Q ss_pred eCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeec
Q 001535 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1058)
Q Consensus 425 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~ 503 (1058)
- ...+.|||-.. ..+.+ +..| ..|..+.|.|.-- +|++++..|.++.-| ..|+.+..+....+.+..++-+
T Consensus 189 Q-K~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 Q-KKYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred h-hceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 4 55799999654 33443 4444 4599999999876 899999999999999 9999999998888888888876
Q ss_pred ccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecc
Q 001535 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1058)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1058)
|- ...+-+|...|+|.+|.....+.+..+..|.++|.++++.++|.++++.|. |..++|||+++...+.++...
T Consensus 261 P~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 261 PY--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred Cc--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC
Confidence 64 368889999999999999999999899999999999999999999999985 899999999998877776652
Q ss_pred cCcceeEEEEcCCCCEEEEEeCCCcEEEEE-CCCC--ceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccC
Q 001535 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1058)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1058)
. ....+++|..| +++.+....|.||. .-.+ .....+-.|.....|..+.|.|-...|-+|...|.-.|.=...
T Consensus 335 ~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 335 H--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred C--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 2 45567787654 44444445799994 3221 2222222223334789999999888888887777666654444
Q ss_pred CccccccccC
Q 001535 661 GLRSLRAVEN 670 (1058)
Q Consensus 661 ~~~~~~~~~~ 670 (1058)
|......++.
T Consensus 411 GePN~Ds~e~ 420 (545)
T KOG1272|consen 411 GEPNYDSLED 420 (545)
T ss_pred CCCCcchhcc
Confidence 4444433333
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-12 Score=144.82 Aligned_cols=238 Identities=14% Similarity=0.122 Sum_probs=157.1
Q ss_pred ceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccee
Q 001535 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQ 443 (1058)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~ 443 (1058)
..|.+||...+... .+..|...+.+.+|||||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46889997643321 145577789999999999999987643 469999998876432
Q ss_pred eeeecccccCeEEEEeecCCCeeEEEEEeCCC--cEEEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEe-eCCe-
Q 001535 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK- 519 (1058)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~- 519 (1058)
+..+.+...+.+|+|||+. ++++.+.++ .|++||..+..+..+..+.......+|++ ||+.|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3344455668899999995 334555555 59999944444556666665566778865 667777665 3454
Q ss_pred -EEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCC
Q 001535 520 -IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1058)
Q Consensus 520 -i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1058)
|.++++.++... .+...+......+|+|||+.++.... .++...|.+||+.+++......+. ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCCC---CCCCceECCCCC
Confidence 555565554432 23333444557899999999988754 223457999999888765332221 233568999999
Q ss_pred EEEEEeC---CCcEEEEECCCCceeeEeccCCCCCCCceEEeeC
Q 001535 599 HFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1058)
Q Consensus 599 ~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1058)
+++..+. .+.|+++++.. .....+.... ..+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 9888764 34688888854 4444444322 2466777876
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-11 Score=128.43 Aligned_cols=335 Identities=13% Similarity=0.142 Sum_probs=210.8
Q ss_pred CCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEE-----e-----CCC
Q 001535 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-----G-----EDS 607 (1058)
Q Consensus 538 ~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~-----~dg 607 (1058)
..++...+++++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.+++|.+- . ..-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 44578899999999999886 778999998888644444332 46778999999988762 1 224
Q ss_pred cEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeee
Q 001535 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1058)
Q Consensus 608 ~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 687 (1058)
.+.+|+++++.....+...... -++..|+.|..+.+- -..+.+.+|++.+.......+ +...|..+.+||
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl-------~~~~i~~f~lSp 175 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKL-------SVSGITMLSLSP 175 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccceeeee-------eccceeeEEecC
Confidence 5789999997666666544332 268899998764432 234689999987642222222 233466677777
Q ss_pred ccccc-cccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCccc
Q 001535 688 SASSA-VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1058)
Q Consensus 688 ~g~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1058)
.+..- ++..-+ -..+.-..+++|.............-++ ....
T Consensus 176 gp~~~~vAvyvP-------------------------------e~kGaPa~vri~~~~~~~~~~~~a~ksF-----Fkad 219 (566)
T KOG2315|consen 176 GPEPPFVAVYVP-------------------------------EKKGAPASVRIYKYPEEGQHQPVANKSF-----FKAD 219 (566)
T ss_pred CCCCceEEEEcc-------------------------------CCCCCCcEEEEeccccccccchhhhccc-----cccc
Confidence 63321 111110 0122335566666652211111111111 1122
Q ss_pred EEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEE
Q 001535 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1058)
Q Consensus 767 i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1058)
-..+.|.+-|.-|+..... |++....+.-| ..++.+.+.. |......+. ..++|.++.|+++|+-+
T Consensus 220 kvqm~WN~~gt~LLvLast------dVDktn~SYYG----Eq~Lyll~t~-g~s~~V~L~---k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLAST------DVDKTNASYYG----EQTLYLLATQ-GESVSVPLL---KEGPVHDVTWSPSGREF 285 (566)
T ss_pred eeEEEeccCCceEEEEEEE------eecCCCccccc----cceEEEEEec-CceEEEecC---CCCCceEEEECCCCCEE
Confidence 2456677666644332221 11111111111 1223333444 443333343 48899999999999988
Q ss_pred EEEe---CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECC---CCEEEEEccCceeeeEecccCCCeeE
Q 001535 847 MSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---STIHIYNVRVDEVKSKLKGHQKRITG 920 (1058)
Q Consensus 847 a~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~ 920 (1058)
+++. -.++.|||++ ++++..+ ..++-+++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~ 359 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TV 359 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eE
Confidence 7776 4779999985 5666665 456678899999 88888877644 7999999999998888875433 45
Q ss_pred EEEcCCCCEEEEEeC------CCcEEEEECCC
Q 001535 921 LAFSTSLNILVSSGA------DAQLCVWSIDT 946 (1058)
Q Consensus 921 l~~s~d~~~l~s~s~------Dg~i~iwd~~~ 946 (1058)
..|+|||.+++|+.. |..++||+...
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 799999999999875 67799999976
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-14 Score=143.17 Aligned_cols=193 Identities=11% Similarity=0.222 Sum_probs=150.0
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeE
Q 001535 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1058)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1058)
..|..+.|-|.--+|++++ .|.++--|+.+|+.+..+....+.+..+.-.| -+.++-+|..+|+|.+|...+.+.+..
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHH
Confidence 3455667777766777777 68889899999999999988888899999999 778999999999999999999999989
Q ss_pred ecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEE
Q 001535 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYD 990 (1058)
Q Consensus 911 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d 990 (1058)
+-.|.++|.++++.++|+|+||+|.|..++|||+.....+.+.... .+...++||.-| +||++....|.+|.
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-------~~a~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-------HPASNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-------CCcccccccccc-ceeeecCCeeeeeh
Confidence 9999999999999999999999999999999999997755444332 556778888766 45666667799995
Q ss_pred CC-CC--eeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001535 991 AS-KM--ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1058)
Q Consensus 991 ~~-~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw 1034 (1058)
-. .+ ..-..+-.|. -.+.|..+.|+|-...|-+|..-|--.+.
T Consensus 361 d~~~~s~~~~~pYm~H~-~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 361 DALKGSGHGETPYMNHR-CGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred hhhcCCCCCCcchhhhc-cCcccccceeccHHHeeeccccCCceeEe
Confidence 32 21 1222222222 25699999999977777777665544443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=145.20 Aligned_cols=236 Identities=13% Similarity=0.074 Sum_probs=150.4
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEe--ccceEEEEEccCCCccccccceeecccccCcccccccccC
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1058)
+|-.+.--........+...+.+.+|||||++++.+.. .+..|.+|++.+|+... +..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccC
Confidence 44444322333444457778999999999996444322 24579999998876432 111
Q ss_pred CCcceEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeC-CCcEEEE
Q 001535 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVW 480 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iw 480 (1058)
..+.+..++|||||+.|+.. +.+| .|.+||+.+++..+ +..+...+....|+|||+ .|+..+. ++...||
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEE
Confidence 22234468999999999865 3344 58899998875432 444556788999999999 4554443 4444455
Q ss_pred --ecCCCeeEEeecccCCeeEEeecccCCceEEEEEeeC---CeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEE
Q 001535 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1058)
Q Consensus 481 --d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 555 (1058)
|..+.....+..+.......+|+| ||+.++..+.+ ..|.+||++++.... +.. ........|+|||+.++.
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 315 KVNINGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEE
Confidence 644444455554444556677765 66777776543 358888987765432 222 223456789999999998
Q ss_pred EeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcC
Q 001535 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1058)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1058)
.+.++ +...+.++++ +|...+.+.++.. .+...+|+|
T Consensus 391 ~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 87532 2445788887 4555566666554 566677776
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-12 Score=143.17 Aligned_cols=245 Identities=18% Similarity=0.140 Sum_probs=153.5
Q ss_pred eeecCCCC---cccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEec-c--ceEEEEEccCCCccccccceeeccc
Q 001535 318 VTYSSSRH---QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-N--GEITLWELAMRDRLVSKPFKIWDMA 391 (1058)
Q Consensus 318 ~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~-d--g~i~iwd~~~~~~~~~~~~~~~~~~ 391 (1058)
++|..... .+|-.+.--........+...+.+.+|||||++ |+..+. + ..|.+||+.+++...
T Consensus 166 iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~---------- 234 (427)
T PRK02889 166 IAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLATGRRRV---------- 234 (427)
T ss_pred EEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCCCCEEE----------
Confidence 55554332 255554433334445568889999999999996 454443 2 469999998876532
Q ss_pred ccCcccccccccCCCcceEEEEECCCCCEEE-EEeCCCeEEEEEec--CCCcceeeeeecccccCeEEEEeecCCCeeEE
Q 001535 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468 (1058)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-s~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l 468 (1058)
+....+.+.+.+|||||+.|+ +.+.+|...||.+. ++. .+ .+..+.+.+....|+|||+. ++
T Consensus 235 ----------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~ 299 (427)
T PRK02889 235 ----------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IY 299 (427)
T ss_pred ----------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EE
Confidence 222334566899999999887 45677877777654 433 33 35556666778899999995 23
Q ss_pred EEEeCCCcEEEEe--cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCC---eEEEEecCCCCceEEeeCCCCcEEE
Q 001535 469 VTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTT 543 (1058)
Q Consensus 469 ~s~~~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~ 543 (1058)
+++..++...+|. ..+.....+..+.......+|+| ||++++..+.++ .|.+||+.++...... .......
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~ 375 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDES 375 (427)
T ss_pred EEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccC
Confidence 3333456666776 34433433333333344567755 778888776554 6999999876644322 2233467
Q ss_pred EEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcC
Q 001535 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1058)
Q Consensus 544 i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1058)
..|+|||+.|+..+..+ +...+.+.+. ++...+.+..+.+ .+...+|+|
T Consensus 376 p~~spdg~~l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 376 PSFAPNGRYILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred ceECCCCCEEEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 89999999999887532 3445777776 4555555554333 455566665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-10 Score=124.94 Aligned_cols=510 Identities=11% Similarity=0.134 Sum_probs=303.8
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
||...|.-+.|+-+.+. |.+...+|.|.+|-+..|.-... .+-....+.|.+++|+.||..+
T Consensus 69 GH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 69 GHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred cCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEcCCCcEE
Confidence 59999999999999885 88888999999999988764321 1123356789999999999999
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeE--------Ee---
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF--------NF--- 490 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------~~--- 490 (1058)
+....||.|.|=.++....... .+.+. ....+.|++|.+ .++.+-..|.+.++|..|.-.. ..
T Consensus 131 cIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 131 CIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI 204 (1189)
T ss_pred EEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceEEeeeee
Confidence 9999999998887776543322 23221 234788999998 5677778899999995553211 11
Q ss_pred -ecccCCeeEEeecc------cCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCC-
Q 001535 491 -EGHEAPVYSICPHH------KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG- 562 (1058)
Q Consensus 491 -~~h~~~v~~~~~~~------~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~- 562 (1058)
......|..+.|.. .++...|+.+-..|.+.+-.-.+......+.. +-.+..+.|+++|..|+++|.+.+.
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~ 283 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDAD 283 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCccccc
Confidence 11222355555532 23567899999999998876555444444443 3678899999999999999875432
Q ss_pred ---C-ceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEee
Q 001535 563 ---D-SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1058)
Q Consensus 563 ---~-~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1058)
+ +.|.+|. .-|..+.+++.... .|+.++|-..|-.++.+ .|+.|++=+++..-.-..+. ..+.|-
T Consensus 284 ~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e--------~TvVy~ 352 (1189)
T KOG2041|consen 284 EPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIE--------ETVVYV 352 (1189)
T ss_pred CccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEee--------eEEEEE
Confidence 2 2455554 45778888887665 78899998777666554 46788877765432222221 011111
Q ss_pred CCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCC
Q 001535 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1058)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1058)
-.++- .-...|.+||..+.....+...+. .++++..+.-.+
T Consensus 353 y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~---------~~~a~~~ehCvL-------------------------- 393 (1189)
T KOG2041|consen 353 YQKEE----LPQYGIMFWDTKTNEKTVKTVTHF---------ENMAFYREHCVL-------------------------- 393 (1189)
T ss_pred EccCC----CcceEEEEEecccChhhhhhhcce---------eehheecccEEE--------------------------
Confidence 01000 011347789988876555544432 223333322222
Q ss_pred CCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCC--Ccc---cEEEEEEecCcceEEEeeccCeeEEeee
Q 001535 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD--TSS---KVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1058)
Q Consensus 719 ~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~---~i~~l~~s~~~~~l~~~~~dg~v~vw~~ 793 (1058)
+.-..++.+.-+.. ....+....+.+-+.-+ -.. .|.-.-..-++..++.++.+ .+.+|..
T Consensus 394 -----------~~~~d~~~i~e~s~--le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy 459 (1189)
T KOG2041|consen 394 -----------INRQDDGVIPEYST--LENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHY 459 (1189)
T ss_pred -----------EeccccCCCcchhh--hhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEE
Confidence 11112222222210 00001111111100000 011 11212223355556666655 6788887
Q ss_pred eccccCCCCcc---cccccceeeccCCCc----ee--eeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCce
Q 001535 794 HRNEQNPSGKA---TASAVPQHWLPSSGL----LM--ANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK 863 (1058)
Q Consensus 794 ~~~~~~~~g~~---~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~ 863 (1058)
...+....-.. ........=|..+|. +- ...+.+ ..++|.+++.| .+++.++- .|.|.-|.+....
T Consensus 460 ~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G--~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~ 535 (1189)
T KOG2041|consen 460 VLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLG--SKDPICALCIS--DKFLMVARESGGIYRYSLNNVV 535 (1189)
T ss_pred eccchhhhhhhhhhcccccccCCCCccchhhceeeccceeecc--CCCcceeeeec--ceEEEEEeccCceEEEEeccee
Confidence 65432111000 000000111222221 10 112333 67888888875 35777776 8999999998877
Q ss_pred EEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEcc---Cceeee-EecccCCCeeEEEEcCCCCEEEEEeCCCcE
Q 001535 864 VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR---VDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQL 939 (1058)
Q Consensus 864 ~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~---~~~~~~-~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i 939 (1058)
....+. -...|..++..- +...+|.-..-|.+.+.|+. +|..+. .++.....|+.+.|..|...|+.--....+
T Consensus 536 l~n~y~-~n~~~y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrm 613 (1189)
T KOG2041|consen 536 LTNSYP-VNPSIYSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRM 613 (1189)
T ss_pred eeeccc-cCchheeEeecc-CcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceE
Confidence 766654 355688888887 77788888888889888876 343333 444556779999999888766655555567
Q ss_pred EEEECCC
Q 001535 940 CVWSIDT 946 (1058)
Q Consensus 940 ~iwd~~~ 946 (1058)
+|++-..
T Consensus 614 yifrgnd 620 (1189)
T KOG2041|consen 614 YIFRGND 620 (1189)
T ss_pred EEecCcC
Confidence 7776555
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-13 Score=137.51 Aligned_cols=154 Identities=19% Similarity=0.336 Sum_probs=116.4
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccc-----------cccceeecccccCcccccccccCCCcceEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV-----------SKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1058)
.+..|+|+.|-|.+..++..+-.+|.+.++|..-.-... .+.+-.|.-.....|.. .+.--.+.|..
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~ 295 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINE 295 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccc
Confidence 357899999999887777777889999999763211100 01111111111111111 12223458999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEe
Q 001535 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1058)
Q Consensus 412 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~ 490 (1058)
.+|||||++||+.+.||.++|+|..+.+.+.. ++.--+...|++|||||+ +|++|++|.-|.||. .+++.+..=
T Consensus 296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLGV---MKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred eeEcCCCceEEEEecCceEEEeeccHHHHHHH---HHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEec
Confidence 99999999999999999999999998776553 445567899999999999 899999999999999 999999999
Q ss_pred ecccCCeeEEeec
Q 001535 491 EGHEAPVYSICPH 503 (1058)
Q Consensus 491 ~~h~~~v~~~~~~ 503 (1058)
++|...|..++|.
T Consensus 371 qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 371 QGHKSWVSVVAFD 383 (636)
T ss_pred cccccceeeEeec
Confidence 9999999999996
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-12 Score=142.99 Aligned_cols=226 Identities=14% Similarity=0.119 Sum_probs=146.0
Q ss_pred ceEEeecCCCcEEEEEeecCCCeEEEEEec---cceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEE
Q 001535 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1058)
Q Consensus 336 ~~~~~~~h~~~V~~v~~sp~g~~lla~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1058)
.......+...+.+.+|||||++ |+..+. +..|.+||+.+++... +..+.+...+.
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~ 253 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAP 253 (433)
T ss_pred CceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCc
Confidence 34445567888999999999996 555442 3479999998876532 22233445678
Q ss_pred EECCCCCEEEE-EeCCC--eEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEe-CCCc--EEEEecCCCe
Q 001535 413 AWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKL--IKVWELSGRK 486 (1058)
Q Consensus 413 ~~spdg~~las-~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~ 486 (1058)
+|||||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+ .++.++ .++. |+++|..+..
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCC
Confidence 99999998864 45555 5999999887643 2555666667899999999 455444 4454 6666733333
Q ss_pred eEEeecccCCeeEEeecccCCceEEEEEeeCC---eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCC
Q 001535 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1058)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~ 563 (1058)
...+..+.......+|++ +|+.++..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+.
T Consensus 328 ~~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~ 402 (433)
T PRK04922 328 AERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGR 402 (433)
T ss_pred eEEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCc
Confidence 444433334445677865 667777665443 6899998776544 232 22245567899999998887643 245
Q ss_pred ceEEEEeCCCCceeeeeecccCcceeEEEEcC
Q 001535 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1058)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1058)
..|++++... .....+..+.+ .+...+|+|
T Consensus 403 ~~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 403 GVLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred eEEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 6788888854 44444443332 445556665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-11 Score=127.12 Aligned_cols=279 Identities=14% Similarity=0.191 Sum_probs=180.7
Q ss_pred CCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEE
Q 001535 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1058)
Q Consensus 344 ~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1058)
....+..++|++|+ ++|.+ .+..|.|++..++..+.. .....+.++.|||.|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34577889999999 67775 577999999988753321 12227889999999999976
Q ss_pred E-----eCC-----CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeecc
Q 001535 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1058)
Q Consensus 424 ~-----~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h 493 (1058)
= ..+ -.+.+|+++++.... .+......-++..|+.|.. ++.--..+.+++|+..+.....-.-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 3 122 347799999943222 2222222237899999886 33333456788888333222222224
Q ss_pred cCCeeEEeecccCCceEEEE-----EeeCCeEEEEecC------------------------------------------
Q 001535 494 EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYD------------------------------------------ 526 (1058)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~~wd~~------------------------------------------ 526 (1058)
...|..+.++|.+.-..+++ .+.-+.|++|...
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 55566666655533333332 1222334444221
Q ss_pred -------------CCCceEEee-CCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEE
Q 001535 527 -------------TMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ 592 (1058)
Q Consensus 527 -------------~~~~~~~~~-~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~ 592 (1058)
+.+...... ...++|.+++|+|+|+.++++.. --...+.++|++ +..+..+.. ++-+++-
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG--fMPAkvtifnlr-~~~v~df~e---gpRN~~~ 318 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYG--FMPAKVTIFNLR-GKPVFDFPE---GPRNTAF 318 (566)
T ss_pred ccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEe--cccceEEEEcCC-CCEeEeCCC---CCccceE
Confidence 001111112 23568999999999987776542 136678889875 444444432 2556788
Q ss_pred EcCCCCEEEEEe---CCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEEC------CCcEEEEEccCC
Q 001535 593 FDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKILANAIG 661 (1058)
Q Consensus 593 ~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~~ 661 (1058)
|+|.|++++.+| -.|.|.|||+.+.+++..+.... .+-+.|+|||+++++++. |+.++||+....
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 999999999877 45899999999988888887654 367899999999999875 688999998654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-12 Score=131.86 Aligned_cols=263 Identities=11% Similarity=0.168 Sum_probs=189.0
Q ss_pred ccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCccccccc
Q 001535 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1058)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~ 809 (1058)
++|...-.|++||+.... +.+.. ......|.-...+.|-..++.-..|..|.+..
T Consensus 68 AtG~YKP~ikvydlanLS-------LKFER-hlDae~V~feiLsDD~SK~v~L~~DR~IefHa----------------- 122 (703)
T KOG2321|consen 68 ATGTYKPQIKVYDLANLS-------LKFER-HLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA----------------- 122 (703)
T ss_pred EecccCCceEEEEcccce-------eeeee-cccccceeEEEeccchhhheEeecCceeeehh-----------------
Confidence 455556789999987421 11111 00122344445556666666666776665532
Q ss_pred ceeeccCCCceeeeeccCCCCCCCeeEEEEec-CCCEEEEEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEE
Q 001535 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (1058)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 888 (1058)
.-|.-.... ....-..++++. ...++++|+...|+-++++.|.-+..+....+.++++..++ -..+|
T Consensus 123 ------k~G~hy~~R-----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLl 190 (703)
T KOG2321|consen 123 ------KYGRHYRTR-----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLL 190 (703)
T ss_pred ------hcCeeeeee-----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceE
Confidence 122211111 122334555553 44566777788899999999999999998889999999999 88899
Q ss_pred EEEECCCCEEEEEccCceeeeEecc------cCC-----CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEec
Q 001535 889 AIGTEDSTIHIYNVRVDEVKSKLKG------HQK-----RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957 (1058)
Q Consensus 889 asg~~dg~v~iwd~~~~~~~~~~~~------h~~-----~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 957 (1058)
++|+.+|.|.+||.++...+..+.. |.+ .|+++.|+.||-.+++|..+|.|.|||+.+.+.+..
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~----- 265 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV----- 265 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-----
Confidence 9999999999999988766555432 333 499999999999999999999999999999764322
Q ss_pred CCCCCCCCceEEEEcCC--CCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001535 958 PAGKTPTGDTRVQFNAD--QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1058)
Q Consensus 958 ~~~~~~~~v~~l~~s~d--~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~ 1035 (1058)
.......+|..+.|-+. +..+++.....++|||-.+|+....+.+ ...+..+++-|++.+++++.+++.+..|=
T Consensus 266 kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 266 KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP----TSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred cccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc----cCCcCceeeecCCceEEEecCCCcceeEE
Confidence 22223377888999765 5667777788899999999999888876 45699999999999999999888877775
Q ss_pred CCC
Q 001535 1036 ADT 1038 (1058)
Q Consensus 1036 ~~~ 1038 (1058)
++.
T Consensus 342 iP~ 344 (703)
T KOG2321|consen 342 IPS 344 (703)
T ss_pred ccc
Confidence 544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-12 Score=122.51 Aligned_cols=342 Identities=15% Similarity=0.242 Sum_probs=217.2
Q ss_pred eeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEE-CCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEE
Q 001535 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1058)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 654 (1058)
..+.++|+.+ .++....-|..+-+++.+.|.+++||- .+.++.-..+... ...+++++.+.++.+.|++|-..|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceEE
Confidence 4456677766 566666667778899999999999995 4455554444332 234689999999999999999999988
Q ss_pred EEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCC
Q 001535 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1058)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1058)
-+.+........
T Consensus 94 efs~sedfnkm~-------------------------------------------------------------------- 105 (404)
T KOG1409|consen 94 EFALSEDFNKMT-------------------------------------------------------------------- 105 (404)
T ss_pred EEEhhhhhhhcc--------------------------------------------------------------------
Confidence 776643211110
Q ss_pred CCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeec
Q 001535 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1058)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~ 814 (1058)
.++.| ..|...+..+.|+-.-.++++.+.|..+. |....
T Consensus 106 --~~r~~-------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e------------------- 144 (404)
T KOG1409|consen 106 --FLKDY-------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE------------------- 144 (404)
T ss_pred --hhhhh-------------------hhhhcceeeEEecCCceeEEEeccccceE-EEeec-------------------
Confidence 01111 11777888888888888888888885543 32211
Q ss_pred cCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEE--ECCCceEEEEecCCCCCeeEEEEecCCCcEEEEE
Q 001535 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF--NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1058)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vw--d~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg 891 (1058)
.|..+.... ....-+++.+.-. +...|. .|.|.+- +.....++.++.+|.+.+++++|.+ ..++|.+|
T Consensus 145 --~~~~lg~Y~----~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg 215 (404)
T KOG1409|consen 145 --SGNRLGGYN----FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSG 215 (404)
T ss_pred --cCCcccceE----eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEec
Confidence 111000000 0011111111111 333333 3554443 3345677889999999999999999 89999999
Q ss_pred ECCCCEEEEEccCce-eeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCC-----------
Q 001535 892 TEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA----------- 959 (1058)
Q Consensus 892 ~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~----------- 959 (1058)
..|..|.+||+.-++ ....+.+|.+.|..+...+--+.|++++.||.|.+|+.+.......-......
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn 295 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWN 295 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHH
Confidence 999999999997653 34678899999999999988899999999999999999864332222111000
Q ss_pred --------------C---CCCCCceEEEEcCCCCEEEEEECCeEEEEECCC-----CeeeeeeccCCCCCCCEEEEEEcc
Q 001535 960 --------------G---KTPTGDTRVQFNADQVRMLVVHETQLAIYDASK-----MERIRQWTPQDALSAPISCAVYSC 1017 (1058)
Q Consensus 960 --------------~---~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~-----~~~~~~~~~~~~~~~~v~~l~~s~ 1017 (1058)
. +....+...+-|.-..+...+..-.+++.|.-. .+....-.+|+. ...|+.+.+..
T Consensus 296 ~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqe 374 (404)
T KOG1409|consen 296 FRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQE 374 (404)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhh
Confidence 0 000222222223333333334444455554221 111111112222 45799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 001535 1018 NSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 1018 dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
+-.+|+|++.|..|+|||+..
T Consensus 375 tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 375 TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hccceeecCCceEEEEEechh
Confidence 988999999999999999864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-08 Score=120.36 Aligned_cols=447 Identities=13% Similarity=0.155 Sum_probs=258.5
Q ss_pred cceEEEEECCCCCEEEE--EeCCC--eEEEEEecCCCcceeeeeec-----ccccCeEEEEeecCCCeeEEEEEeCCCcE
Q 001535 407 ISVSRVAWSPDGNYVGV--AFTKH--LIQLYSYAGSNDLRQHSQID-----AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1058)
Q Consensus 407 ~~V~~l~~spdg~~las--~~~dg--~i~iwd~~~~~~~~~~~~l~-----~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 477 (1058)
..+...+|.+..+.+.. +.... .|.+...........+..+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 35667777776554433 32222 23444333332222222332 3456899999999998 57777778999
Q ss_pred EEE----ecCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecC------------C-CC----------c
Q 001535 478 KVW----ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD------------T-MG----------S 530 (1058)
Q Consensus 478 ~iw----d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~------------~-~~----------~ 530 (1058)
.+. |.....+.....-...|.+++|+| |+..|+..+.++++.+.+-+ . +. .
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 988 544444444445677899999977 66789988888888775321 0 00 0
Q ss_pred eEEeeC------------------------CCCcEEEEEEccCCCEEEEEeccCCC--CceEEEEeCCCCceeeeeeccc
Q 001535 531 RVDYDA------------------------PGHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFR 584 (1058)
Q Consensus 531 ~~~~~~------------------------~~~~i~~i~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~~~~~ 584 (1058)
...+.+ ....-..++|-.||.++|+.+.+... ...+++|+-+ |.+..+-..-.
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~ 256 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD 256 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC
Confidence 000000 12244678899999999988753322 4789999965 66555544322
Q ss_pred CcceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeEeccC--CCCCCCceEEeeCCCCEEEEEECCCcEEEEEcc
Q 001535 585 KKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAE--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
+ .-..++|.|.|+.|++.-. ...|.+|..+ |-.-..+... .....|..+.|++|+..||....|. |.+|...
T Consensus 257 g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 257 G-LEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred C-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 2 4556899999999988753 4567777754 4333333332 2344689999999999999987664 9999876
Q ss_pred CCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCC
Q 001535 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPK 739 (1058)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 739 (1058)
+-...++..-. |
T Consensus 334 NYHWYLKqei~--------------~------------------------------------------------------ 345 (928)
T PF04762_consen 334 NYHWYLKQEIR--------------F------------------------------------------------------ 345 (928)
T ss_pred CCEEEEEEEEE--------------c------------------------------------------------------
Confidence 64322221100 0
Q ss_pred cceeeeeecCCceEEEEecCCCCCcccEEEEEEecCc-ceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCC
Q 001535 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1058)
Q Consensus 740 vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~ 818 (1058)
+ ....+..+.|+|.. ..|.....+|.+..+++. |+...+
T Consensus 346 ------------------~----~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s 385 (928)
T PF04762_consen 346 ------------------S----SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRS 385 (928)
T ss_pred ------------------c----CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEec
Confidence 0 11122235666643 345566666777666542 111111
Q ss_pred ceeeeeccCCCCCCCeeEEEEec-CCCEEEEEeCCcEEEEECCCce---E--EEEecCCCCCeeEEEEecCCCcEEEEEE
Q 001535 819 LLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFK---V--MTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1058)
Q Consensus 819 ~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~---~--~~~~~~~~~~i~~l~~s~~~~~~lasg~ 892 (1058)
. ..+| |...+++.++.++.+-.+.... + ...+. -...|.+++|++ ++..+|+-.
T Consensus 386 ~------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~ 445 (928)
T PF04762_consen 386 P------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLT 445 (928)
T ss_pred C------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEE
Confidence 0 0011 2223444445567777765442 1 12332 346799999999 777788899
Q ss_pred CCCCEEEEEccCcee--------eeEec----------ccCCCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceec
Q 001535 893 EDSTIHIYNVRVDEV--------KSKLK----------GHQKRITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRK 951 (1058)
Q Consensus 893 ~dg~v~iwd~~~~~~--------~~~~~----------~h~~~V~~l~~s~d~~~l~s~s~D---g~i~iwd~~~~~~~~ 951 (1058)
.||+|.+|....... ...+. .-...+..++|..+...++....+ ..+.++++...+...
T Consensus 446 ~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 525 (928)
T PF04762_consen 446 SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA 525 (928)
T ss_pred CCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce
Confidence 999999998654321 11111 123457788898887777766654 578888885433211
Q ss_pred eEEEecCCCCCCCCceEEEEcCCCC-EEEEEECCeEEEEECC
Q 001535 952 SVTIHIPAGKTPTGDTRVQFNADQV-RMLVVHETQLAIYDAS 992 (1058)
Q Consensus 952 ~~~~~~~~~~~~~~v~~l~~s~d~~-~l~~~~d~~v~v~d~~ 992 (1058)
....... . ...+..+...++.. .++-..+|.+..++..
T Consensus 526 ~~~~~~~-~--~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~ 564 (928)
T PF04762_consen 526 SVESSTE-V--DGVVLIISSSPDSGSLYIQTNDGKVFQLSSD 564 (928)
T ss_pred eEEEEec-c--CceEEEEeeCCCCcEEEEEECCCEEEEeecC
Confidence 1111110 0 13344444455544 3333567777655544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=139.79 Aligned_cols=236 Identities=13% Similarity=0.060 Sum_probs=153.1
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEe--ccceEEEEEccCCCccccccceeecccccCcccccccccC
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1058)
+|-.+..-........|...|.+.+|||||++++.+.. .+..|.+||+.+++... +..
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~ 243 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN 243 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence 55544433444455568889999999999996444332 24689999998876432 344
Q ss_pred CCcceEEEEECCCCCEEE-EEeCCCe--EEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEe-CCC--cEE
Q 001535 405 VPISVSRVAWSPDGNYVG-VAFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~la-s~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~-~d~--~i~ 478 (1058)
+.+.+.+.+|||||+.|+ +.+.++. |.+||+.+++.. .+..+........|+|||+. ++..+ .++ .|+
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence 566778899999999886 4455554 777788877543 35566667788999999994 44444 333 688
Q ss_pred EEecCCCeeEEeecccCCeeEEeecccCCceEEEEEeeC---CeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEE
Q 001535 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1058)
Q Consensus 479 iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 555 (1058)
+||.++.....+..+...+....|+| +|+.|+....+ ..|.+||+...... .+. ....+..+.|+|||+.|+.
T Consensus 318 ~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 318 VMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred EEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEE
Confidence 88855555556655555566777865 66778776543 35778887554432 222 2335678899999999987
Q ss_pred EeccCCCC--ceEEEEeCCCCceeeeeecccCcceeEEEEcC
Q 001535 556 CGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1058)
Q Consensus 556 ~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1058)
.+...... ..++++|+..+.. ..+.. .. .+...+|+|
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 66432221 4688888876554 33332 11 344455654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-11 Score=125.14 Aligned_cols=353 Identities=11% Similarity=0.081 Sum_probs=230.6
Q ss_pred CCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEE
Q 001535 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1058)
Q Consensus 344 ~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1058)
.-++..++|||.|+ +|++. ....|.+|.......+.. --...|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~-~~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSE-HAAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehh-hccceEEccccchhheee---------------------eecCCceecccCcccceeee
Confidence 44788999999999 46765 455789998766553321 12246899999999999998
Q ss_pred EeCC---------------CeEEEEEecCCCcceeeeeecccccC--eE-EEEeecCCCeeEEEEEeCCCcEEEEecCCC
Q 001535 424 AFTK---------------HLIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1058)
Q Consensus 424 ~~~d---------------g~i~iwd~~~~~~~~~~~~l~~h~~~--v~-~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 485 (1058)
=+.. ..+.+||..+|..+.. +.+...+ .+ -+.|+.+.. +++-. -...++|++.++.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s---f~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS---FNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDN 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEee---ccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCc
Confidence 6543 3499999999987663 4444444 55 788999887 44433 3457888884332
Q ss_pred e-eEEeecc-cCCeeEEeecccCCceEEEE-----EeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEec
Q 001535 486 K-LFNFEGH-EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 486 ~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 558 (1058)
. ...+..- ...|...+|+|.+++..|+. .+.++++++|.+...............-..+.|.+.|++++.-..
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence 2 1111111 24567777887766666654 356788999998765555544444444456788888887765432
Q ss_pred c-------CCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeeEeccCCCC
Q 001535 559 S-------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGL 629 (1058)
Q Consensus 559 ~-------~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~ 629 (1058)
. --++..++++++....+ ....... .+|...+|.|.++.+++.+ .+..+-++|++.. ....+...
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~--- 316 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERSI-PVEKDLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ--- 316 (561)
T ss_pred EeeecccceeccceEEEEeeccccc-ceecccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc---
Confidence 1 11346788888874333 2222323 3899999999988776644 7788999998766 44444322
Q ss_pred CCCceEEeeCCCCEEEEEECC---CcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeecc
Q 001535 630 PNLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1058)
Q Consensus 630 ~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1058)
.=+.+.|+|.+++++.++-| |.+.+|+......+...+.+.. ..-+.|+|||+++.+......
T Consensus 317 -~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-------~s~~~wspd~qF~~~~~ts~k------ 382 (561)
T COG5354 317 -KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-------TSYCDWSPDGQFYDTDTTSEK------ 382 (561)
T ss_pred -ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-------ceEeeccCCceEEEecCCCcc------
Confidence 23678999999999997765 6799999877655443444432 234578899988744332110
Q ss_pred CCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccC
Q 001535 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1058)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 786 (1058)
--.|..+.+|++... .-.....+.|.|.|++..+.+.++
T Consensus 383 -------------------------~~~Dn~i~l~~v~g~----------------~~fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 383 -------------------------LRVDNSIKLWDVYGA----------------KVFELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -------------------------cccCcceEEEEecCc----------------hhhhhhhccccCCcccceeeccCC
Confidence 123578889998631 112456677888888777766654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=123.21 Aligned_cols=274 Identities=11% Similarity=0.126 Sum_probs=192.3
Q ss_pred cCCCcEEEEEeecCCCeEEEEEe-ccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGS-SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1058)
.....|..++|--+|+.=+..+. .+..+..+.........+ .||. ......+++|..++.. | ..
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~---------~~~~l~~~~I~gl~~~-d-g~ 117 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDA---------KTVSLGTKSIKGLKLA-D-GT 117 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccc---------cccccccccccchhhc-C-CE
Confidence 34567888888777653333443 555666666655444322 1221 1234456677777664 3 36
Q ss_pred EEEEeCCCeEEEEEecCCCcce-eeeeecccccCeEEEEeecCCCeeEEEEEeCC--CcEEEEe-cCCCeeEEeec----
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEG---- 492 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd-~~~~~~~~~~~---- 492 (1058)
|++|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++.... ++++|+.. ..+.||| ...+.+.+-+.
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 7778889999999998543111 11123333 45777777777665 67779998 8999999 55544432211
Q ss_pred ---ccC--CeeEEeecccCCceEEEEEeeCCeEEEEecCCCCc-eEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceE
Q 001535 493 ---HEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1058)
Q Consensus 493 ---h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i 566 (1058)
-.- .++++.|.+..+...|++++.-+.+++||.+.+.. ...+.....+++++...|+|++++++.. .+.+
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l 271 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQL 271 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchh
Confidence 122 34566776654468999999999999999987654 4467777889999999999999999874 7889
Q ss_pred EEEeCCCCceeee-eecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCC
Q 001535 567 VEWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 567 ~~wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1058)
..+|++.++.... +.+..+ .++++..+|.+.+++++|-|..|+|+|..+.+++....... ..+++-+.++
T Consensus 272 ~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~~ 342 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRDD 342 (412)
T ss_pred heecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecCC
Confidence 9999999998887 666665 89999999999999999999999999999977776655443 3566666553
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-10 Score=118.31 Aligned_cols=366 Identities=11% Similarity=0.149 Sum_probs=222.2
Q ss_pred EEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEE
Q 001535 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1058)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1058)
.+|...+......+....-++..+++||.|.++++.. ...|.+|+-..+..+..+... .+.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 4455544444444444566889999999999999875 556999998877755555432 57788999999999
Q ss_pred EEEeC---------------CCcEEEEECCCCceeeEeccCCCCCCCc-eEEeeCCCCEEEEEECCCcEEEEEccCCccc
Q 001535 601 LAVGE---------------DSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1058)
Q Consensus 601 ~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1058)
.+-+. +..+.+||..+|.++..+.........+ -+.|+-+..++|-. -...+.|+++ ++...
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 98653 2359999999999999887655432234 67888888777655 3357888887 32111
Q ss_pred cccccCCCccccc-CcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCccee
Q 001535 665 LRAVENPPFEALR-TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1058)
Q Consensus 665 ~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~ 743 (1058)
.++....+ ..|....++|.|+.- .+..|
T Consensus 165 -----~~p~~~lr~~gi~dFsisP~~n~~--------------------------------------------~la~~-- 193 (561)
T COG5354 165 -----EHPFKNLRPVGILDFSISPEGNHD--------------------------------------------ELAYW-- 193 (561)
T ss_pred -----cCchhhccccceeeEEecCCCCCc--------------------------------------------eEEEE--
Confidence 11111111 123333444432210 01111
Q ss_pred eeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeee
Q 001535 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1058)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 823 (1058)
.|.- .+..+.+++|.+..+. .. ...
T Consensus 194 -----------------------------tPEk-----~~kpa~~~i~sIp~~s------~l---------------~tk 218 (561)
T COG5354 194 -----------------------------TPEK-----LNKPAMVRILSIPKNS------VL---------------VTK 218 (561)
T ss_pred -----------------------------cccc-----CCCCcEEEEEEccCCC------ee---------------eee
Confidence 1110 1233445555443111 00 000
Q ss_pred eccCCCCCCCeeEEEEecCCCEEEEEe------------CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEE--
Q 001535 824 DVAGVNLEEAVPCIALSKNDSYVMSAT------------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA-- 889 (1058)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la-- 889 (1058)
.+ ..-.-..+.|.+.|+++.+-- ...++++++....+.... .-.++|...+|.| .++.++
T Consensus 219 ~l----fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi 292 (561)
T COG5354 219 NL----FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVI 292 (561)
T ss_pred ee----EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-cCCceeEE
Confidence 00 011112345555565553321 234888888744433332 5578999999999 554444
Q ss_pred EEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeceEEEecCCCCCCCCc
Q 001535 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966 (1058)
Q Consensus 890 sg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 966 (1058)
+|-.+..+.++|++.. +. +......=+.+.|||.+++++.++.| |.+-+||....-...... .+ ...
T Consensus 293 ~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~----~~---~n~ 362 (561)
T COG5354 293 SGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF----NG---LNT 362 (561)
T ss_pred ecccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe----ec---CCc
Confidence 3457889999998876 33 33344555678999999999998887 679999998744322111 11 334
Q ss_pred eEEEEcCCCCEEEEE-------ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001535 967 TRVQFNADQVRMLVV-------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1029 (1058)
Q Consensus 967 ~~l~~s~d~~~l~~~-------~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg 1029 (1058)
+-+.||||++++.+. .|..+.|||+...... ..+.+.|.|.|++.-+.+.+.
T Consensus 363 s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 363 SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-----------hhhhccccCCcccceeeccCC
Confidence 566799999999884 3778999998643322 345667777777766655443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=123.41 Aligned_cols=137 Identities=16% Similarity=0.196 Sum_probs=117.9
Q ss_pred CCCeeEEEEecC--CCEEEEEe-CCcEEEEECCCc-eEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCce
Q 001535 831 EEAVPCIALSKN--DSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1058)
Q Consensus 831 ~~~v~~~~~s~d--g~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~ 906 (1058)
.-.++++.|-+. ...+|++. -+.+++||...+ +++..+.-...+++++...| ++.++.+|..-|.+..||+++++
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCce
Confidence 445677888776 77888888 799999999865 56778887888999999999 99999999999999999999999
Q ss_pred eeeE-ecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCC
Q 001535 907 VKSK-LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1058)
Q Consensus 907 ~~~~-~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 975 (1058)
.... +.+-.+.|.++..+|.+++|+++|-|+.|+|+|+++.+.+....+. +.++.+.+.++-
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-------s~lt~il~~~~~ 343 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-------SRLTFILLRDDV 343 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh-------ccccEEEecCCc
Confidence 8877 8899999999999999999999999999999999997766665554 566777776653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=120.41 Aligned_cols=156 Identities=12% Similarity=0.182 Sum_probs=110.9
Q ss_pred eEEEEecCCCcEEEEEEC----------CCCEEEEEccC-ceeeeEecc-cCCCeeEEEEcCCCCEEEEE--eCCCcEEE
Q 001535 876 TFLAFHPQDNNIIAIGTE----------DSTIHIYNVRV-DEVKSKLKG-HQKRITGLAFSTSLNILVSS--GADAQLCV 941 (1058)
Q Consensus 876 ~~l~~s~~~~~~lasg~~----------dg~v~iwd~~~-~~~~~~~~~-h~~~V~~l~~s~d~~~l~s~--s~Dg~i~i 941 (1058)
..+.|++ .|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.++.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3577888 6766554432 12345555532 223333332 34579999999999987654 35679999
Q ss_pred EECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEE----CCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEcc
Q 001535 942 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017 (1058)
Q Consensus 942 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~----d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~ 1017 (1058)
||++ ++.+..+ .. ..+..+.|||+|++|+++. .|.+.+||+++.+.+..... ..++.++|||
T Consensus 88 yd~~-~~~i~~~--~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-----~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-GKKIFSF--GT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-----SDATDVEWSP 153 (194)
T ss_pred EcCc-ccEeEee--cC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-----CcEEEEEEcC
Confidence 9997 3333222 11 5668899999999999963 46799999998888776543 3578999999
Q ss_pred CCCEEEEEeC------CCcEEEEeCCCCeEEEEEcC
Q 001535 1018 NSQLVFATFC------DGNIGVFDADTLRLRCYIAP 1047 (1058)
Q Consensus 1018 dg~~l~t~~~------dg~i~iw~~~~~~~~~~~~~ 1047 (1058)
||++++++.. |..++||++ +|+++.+..-
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~~ 188 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKPF 188 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEe-cCeEeEecch
Confidence 9999998774 788999999 6888776543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-09 Score=118.10 Aligned_cols=207 Identities=16% Similarity=0.223 Sum_probs=134.6
Q ss_pred CeeEEEEecCCCEEEEEe--CCcEEEEECCC-ceEEEE---ec----------CCCCCeeEEEEecCCCcEEEEEE-CCC
Q 001535 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTT---FM----------SPPPASTFLAFHPQDNNIIAIGT-EDS 895 (1058)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~~lasg~-~dg 895 (1058)
....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345678888888888776 67888888875 333222 11 1234578999999 888777665 345
Q ss_pred CEEEEEccCce--ee--eEec-ccCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECC--CCceeceEEEecCCC-CCC-CC
Q 001535 896 TIHIYNVRVDE--VK--SKLK-GHQKRITGLAFSTSLNILVSSG-ADAQLCVWSID--TWEKRKSVTIHIPAG-KTP-TG 965 (1058)
Q Consensus 896 ~v~iwd~~~~~--~~--~~~~-~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~-~~~-~~ 965 (1058)
.|++|++.... +. ..+. .....-..++|+||++++.... .+++|.++++. ++............. ... ..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 21 2222 2334567899999999886655 46789999998 554333333332211 111 25
Q ss_pred ceEEEEcCCCCEEEEEE--CCeEEEEECCC--Ce--eeeeeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeC--
Q 001535 966 DTRVQFNADQVRMLVVH--ETQLAIYDASK--ME--RIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDA-- 1036 (1058)
Q Consensus 966 v~~l~~s~d~~~l~~~~--d~~v~v~d~~~--~~--~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~-~dg~i~iw~~-- 1036 (1058)
...+++||||++|.++. .+.|.+|+++. +. .+..+... ......++++|||++|+++. .++.|.+|++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 78999999999999974 66899999942 32 23333322 44589999999999999877 5678999876
Q ss_pred CCCeEEE
Q 001535 1037 DTLRLRC 1043 (1058)
Q Consensus 1037 ~~~~~~~ 1043 (1058)
.+|.+..
T Consensus 324 ~tG~l~~ 330 (345)
T PF10282_consen 324 DTGKLTP 330 (345)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 5776543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-09 Score=118.81 Aligned_cols=308 Identities=14% Similarity=0.226 Sum_probs=185.3
Q ss_pred EEEEeeC----CeEEEEecCCCCceEEe---eCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC--ce--eee
Q 001535 511 IFSTAID----GKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TI--KRT 579 (1058)
Q Consensus 511 l~s~~~d----g~i~~wd~~~~~~~~~~---~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~--~~~ 579 (1058)
++.|+.. +.|.+|+++.....+.. .........++++|++++|++........+.|..|.+... ++ +.+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3445544 68888888544443322 1234466778999999999998753224678888887653 33 333
Q ss_pred eecccCcceeEEEEcCCCCEEEEEe-CCCcEEEEECCC-CceeeE---ecc--------CCCCCCCceEEeeCCCCEEEE
Q 001535 580 YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTS---TDA--------EGGLPNLPRLRFSKEGNLLAV 646 (1058)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~---~~~--------~~~~~~v~~v~~s~~~~~l~~ 646 (1058)
... .+.....++++|++++|+++. .+|.|.++++.. |.+... ... ........++.++|+|+++++
T Consensus 82 ~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred ecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 332 222456689999999999987 689999999987 444332 111 011223568999999998887
Q ss_pred EEC-CCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCC
Q 001535 647 TTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1058)
Q Consensus 647 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1058)
... ...|++|++......+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~--------------------------------------------------------- 183 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPV--------------------------------------------------------- 183 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEE---------------------------------------------------------
T ss_pred EecCCCEEEEEEEeCCCceEEEe---------------------------------------------------------
Confidence 654 3478888876542111100
Q ss_pred CCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeec-cCeeEEeeeeccccCCCCcc
Q 001535 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKA 804 (1058)
Q Consensus 726 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~ 804 (1058)
..+.++ ....-+.++|+|+++++++..+ ++.|.++++.... |..
T Consensus 184 ---------------------------~~~~~~----~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~----g~~ 228 (345)
T PF10282_consen 184 ---------------------------DSIKVP----PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD----GSL 228 (345)
T ss_dssp ---------------------------EEEECS----TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT----TEE
T ss_pred ---------------------------eccccc----cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC----Cce
Confidence 000111 3345678999999998887776 7889999876211 111
Q ss_pred cccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEECC--Cce--EEEEecCCCCCeeEE
Q 001535 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM--TFK--VMTTFMSPPPASTFL 878 (1058)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~--~~~--~~~~~~~~~~~i~~l 878 (1058)
..... +.....+.........++++|||++|.++. .+.|.+|++. +++ .+..+.......+.+
T Consensus 229 ~~~~~-----------~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~ 297 (345)
T PF10282_consen 229 TEIQT-----------ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHF 297 (345)
T ss_dssp EEEEE-----------EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEE
T ss_pred eEEEE-----------eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEE
Confidence 00000 000000101223678899999999998887 5789999983 343 344444444558999
Q ss_pred EEecCCCcEEEEEE-CCCCEEEEEcc--CceeeeEec-ccCCCeeEEEE
Q 001535 879 AFHPQDNNIIAIGT-EDSTIHIYNVR--VDEVKSKLK-GHQKRITGLAF 923 (1058)
Q Consensus 879 ~~s~~~~~~lasg~-~dg~v~iwd~~--~~~~~~~~~-~h~~~V~~l~~ 923 (1058)
+++| +|++|+++. .++.|.+|++. +|.+...-. ..-....|+.|
T Consensus 298 ~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 298 AFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999 888888877 55689999774 665443321 12344556655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=118.88 Aligned_cols=152 Identities=14% Similarity=0.259 Sum_probs=108.4
Q ss_pred eEEEEecCCCEEEEEeC-----------CcEEEEEC--CCceEEEEecC-CCCCeeEEEEecCCCcEEEE--EECCCCEE
Q 001535 835 PCIALSKNDSYVMSATG-----------GKISLFNM--MTFKVMTTFMS-PPPASTFLAFHPQDNNIIAI--GTEDSTIH 898 (1058)
Q Consensus 835 ~~~~~s~dg~~la~~~d-----------g~i~vwd~--~~~~~~~~~~~-~~~~i~~l~~s~~~~~~las--g~~dg~v~ 898 (1058)
..+.|+++|++|++-.+ +...+|.+ .. .....+.- ..++|.+++|+| +++.+|+ |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-CccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccE
Confidence 35788899987765421 23444444 33 33344432 345799999999 7776544 44678999
Q ss_pred EEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCC
Q 001535 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1058)
Q Consensus 899 iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 975 (1058)
+||++ ++.+..+. ...++.+.|||+|++|++++.+ |.|.+||+++.+.+..... ..++.++|||||
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--------~~~t~~~WsPdG 155 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--------SDATDVEWSPDG 155 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--------CcEEEEEEcCCC
Confidence 99996 66666653 5678899999999999998754 6699999998765544321 457899999999
Q ss_pred CEEEEE-------ECCeEEEEECCCCeeeeee
Q 001535 976 VRMLVV-------HETQLAIYDASKMERIRQW 1000 (1058)
Q Consensus 976 ~~l~~~-------~d~~v~v~d~~~~~~~~~~ 1000 (1058)
++++++ .|..++||+.. |+.+...
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 999995 27889999985 5555443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-09 Score=112.13 Aligned_cols=209 Identities=13% Similarity=0.153 Sum_probs=129.2
Q ss_pred EEEEecCCCEEEEEe---CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEcc-Cceee---
Q 001535 836 CIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVK--- 908 (1058)
Q Consensus 836 ~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~-~~~~~--- 908 (1058)
.+++||||+++.+.. ++.|.+.|+.+++.+.++....+ ..-...+. +. .. +-+.||......+. +|+..
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEee
Confidence 567778888777664 46688888888888777764321 11122221 11 11 12234433332222 11110
Q ss_pred -eEecccCCCee-EEEEcC-CCCEEEEEeCCCcEEEEECCCCceeceEEEecC------CCCCCCCceEEEEcCCCCEEE
Q 001535 909 -SKLKGHQKRIT-GLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNADQVRML 979 (1058)
Q Consensus 909 -~~~~~h~~~V~-~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~v~~l~~s~d~~~l~ 979 (1058)
..+.+-..++. .-.|++ ||+++..... |+|.+-|+...+.......... .+-.++...-+++++|++.+.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 01111001110 014455 8888776665 9999999765433222222211 122335556699999999888
Q ss_pred EEE-----------CCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCeEEEEEc
Q 001535 980 VVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYIA 1046 (1058)
Q Consensus 980 ~~~-----------d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~t~~-~dg~i~iw~~~~~~~~~~~~ 1046 (1058)
+.. .+.|.++|..+++.+..+.. ...+..++|||||+ +|++.. .++.|.+.|..+++.+..+.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 832 14799999999999998876 46899999999999 888766 57889999999999999996
Q ss_pred CccccCC
Q 001535 1047 PSTYLSP 1053 (1058)
Q Consensus 1047 ~~~~~~~ 1053 (1058)
..+..|.
T Consensus 340 ~vg~~P~ 346 (352)
T TIGR02658 340 QLGRGPQ 346 (352)
T ss_pred cCCCCCe
Confidence 5554443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-11 Score=117.66 Aligned_cols=264 Identities=12% Similarity=0.195 Sum_probs=176.0
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceee-cccccCcccccccccCCCcceEEEEECCCCC-
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIW-DMAACSLPFQASIFKDVPISVSRVAWSPDGN- 419 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~- 419 (1058)
...+-|.+|.|..+|. +||+|..+|.|.++.-..... ..+.+... ....++..+.. --.-...|..+.|.+++.
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-cceeeeeeeeccCcccchhh--hhhhhhhhhhceecCCCCc
Confidence 3456799999999999 699999999999997543221 11111110 00001111110 112245788999998654
Q ss_pred -EEEEEeCCCeEEEEEecCCCcce------------------e--------------eee-ecccccCeEEEEeecCCCe
Q 001535 420 -YVGVAFTKHLIQLYSYAGSNDLR------------------Q--------------HSQ-IDAHVGAVNDLAFAYPNKL 465 (1058)
Q Consensus 420 -~las~~~dg~i~iwd~~~~~~~~------------------~--------------~~~-l~~h~~~v~~l~~s~d~~~ 465 (1058)
.++..+.|.+|++|.+....... . ... -.+|.-.|.++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667789999999885432111 0 001 136888899999999998
Q ss_pred eEEEEEeCCCcEEEEe--cCCCe--eEEeec-----ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCc-----e
Q 001535 466 LCVVTCGDDKLIKVWE--LSGRK--LFNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-----R 531 (1058)
Q Consensus 466 ~~l~s~~~d~~i~iwd--~~~~~--~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-----~ 531 (1058)
.++++ +|-.|-+|+ ...+. +..++. -..-|++..|+|... ..++-.+..|+|++.|++.... .
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 56655 488999999 33333 222332 245678888998754 6788888899999999984221 1
Q ss_pred -EEe----------eCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeC-CCCceeeeeecccC-----------cc-
Q 001535 532 -VDY----------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAGFRK-----------KS- 587 (1058)
Q Consensus 532 -~~~----------~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~-~~~~~~~~~~~~~~-----------~~- 587 (1058)
... ..--..|..+.|+++|+++++-. -.+|.+||+ ...+++.+++.|.. ..
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 111 11123688999999999999863 578999999 45677777766532 11
Q ss_pred --eeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001535 588 --NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1058)
Q Consensus 588 --i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 618 (1058)
-..++|+.++.++++|+....++++++..|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2347899999999999999999999966553
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-09 Score=113.82 Aligned_cols=326 Identities=13% Similarity=0.227 Sum_probs=193.9
Q ss_pred cEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEe-----------CCCc
Q 001535 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-----------EDSQ 608 (1058)
Q Consensus 540 ~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~dg~ 608 (1058)
.-+-+.|||.|.+|++-. ..-|.+|--.+...++.|.. . .+.-+.|||+.++|++-+ +...
T Consensus 212 Tetyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~H-p--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFYH-P--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhccC-C--CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 456789999999999986 55689998777777766653 2 477899999999999965 2257
Q ss_pred EEEEECCCCceeeEeccCCC-CCCCceEEeeCCCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeee
Q 001535 609 IKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1058)
Q Consensus 609 i~vwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 687 (1058)
+.|||+.+|.....+..... ...-.-..||.|++++|.... ..|.|++..+- ..+...+
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~Ks--------------- 343 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKKS--------------- 343 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeecccc---------------
Confidence 99999999999888765322 222345789999999988776 46778775431 1111100
Q ss_pred ccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccE
Q 001535 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1058)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1058)
-.-..|
T Consensus 344 --------------------------------------------------------------------------lki~gI 349 (698)
T KOG2314|consen 344 --------------------------------------------------------------------------LKISGI 349 (698)
T ss_pred --------------------------------------------------------------------------cCCccc
Confidence 022345
Q ss_pred EEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEE
Q 001535 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1058)
Q Consensus 768 ~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1058)
..+.|+|.+..|+- |. +.+.. ....++-+.+ |.++.|=
T Consensus 350 r~FswsP~~~llAY---------wt----------------------pe~~~----------~parvtL~ev-Ps~~~iR 387 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAY---------WT----------------------PETNN----------IPARVTLMEV-PSKREIR 387 (698)
T ss_pred cCcccCCCcceEEE---------Ec----------------------ccccC----------CcceEEEEec-Cccceee
Confidence 66677776553332 21 11000 1111211111 2322221
Q ss_pred EEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEE----------EECCCCEEEEEccCceeeeEecccCCC
Q 001535 848 SATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI----------GTEDSTIHIYNVRVDEVKSKLKGHQKR 917 (1058)
Q Consensus 848 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~las----------g~~dg~v~iwd~~~~~~~~~~~~h~~~ 917 (1058)
+ ..++++.+.+ |-|-. +|.+|+. ++.-..+.|+.++....-...-.-...
T Consensus 388 t-----~nlfnVsDck--------------LhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 388 T-----KNLFNVSDCK--------------LHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred e-----ccceeeeccE--------------EEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 1 1222222222 22222 3333332 222234667777655432222234577
Q ss_pred eeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE----ECCeEEEEE
Q 001535 918 ITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HETQLAIYD 990 (1058)
Q Consensus 918 V~~l~~s~d~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~----~d~~v~v~d 990 (1058)
|...+|-|.|..+++.+.. .++.+|.+++....-.+...... ...+.+.|||.|++++++ ..|.+.++|
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 8999999999988876553 57899988842111111111111 345789999999999985 367899999
Q ss_pred CCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeC
Q 001535 991 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC------DGNIGVFDA 1036 (1058)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~------dg~i~iw~~ 1036 (1058)
+.-......-.+. -...+.+.|.|.|+|++|++. |.-.++|++
T Consensus 524 ~~~a~~k~~~~~e---h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 524 TDYADLKDTASPE---HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred cchhhhhhccCcc---ccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 8853322221111 245678999999999999884 334556655
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-10 Score=126.85 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=142.9
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC--c
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~ 476 (1058)
+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999877644 368999998876432 3333445667899999995 333555555 5
Q ss_pred EEEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEe-eCC--eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEE
Q 001535 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1058)
Q Consensus 477 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 553 (1058)
|++||..+.....+..+........|++ ||+.++..+ .+| .|.++++.++.... +...........|+|||+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8888944444556666666666677765 566665554 333 46666776655332 22223334567899999999
Q ss_pred EEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCC
Q 001535 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (1058)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~ 630 (1058)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..|++++... .....+... ..
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--QG 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--CC
Confidence 887642 23446889999887653322221 12245899999999887643 3577778754 333344332 22
Q ss_pred CCceEEeeCC
Q 001535 631 NLPRLRFSKE 640 (1058)
Q Consensus 631 ~v~~v~~s~~ 640 (1058)
.+...+|+|-
T Consensus 419 ~~~~p~ws~~ 428 (430)
T PRK00178 419 EVREPSWSPY 428 (430)
T ss_pred CcCCCccCCC
Confidence 4566777763
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-10 Score=126.16 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=141.4
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCc--
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 476 (1058)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44567788999999999999876543 258888998876422 2222334457899999995 3445566665
Q ss_pred EEEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEe-eCCe--EEEEecCCCCceEEeeCCCCcEEEEEEccCCCEE
Q 001535 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1058)
Q Consensus 477 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 553 (1058)
|++||..+..+..+..+.......+|++ ||+.++..+ .++. |.++|+.++... .+..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 7777844445566666666667778866 566666554 3444 555566554432 222233334567899999999
Q ss_pred EEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeeEeccCCCCC
Q 001535 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-S--QIKFWDMDNVNILTSTDAEGGLP 630 (1058)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~ 630 (1058)
+..+.. .+...|.++|+.+++........ ......|+|+|+.|+..+.+ | .+++++. +|.....+.... .
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--G 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--C
Confidence 887642 23346777898887654322221 12234799999998876533 3 4777887 555555554332 2
Q ss_pred CCceEEeeC
Q 001535 631 NLPRLRFSK 639 (1058)
Q Consensus 631 ~v~~v~~s~ 639 (1058)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 467778877
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-10 Score=126.12 Aligned_cols=241 Identities=12% Similarity=0.047 Sum_probs=146.6
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeE--EEEEecc--ceEEEEEccCCCccccccceeecccccCcccccccc
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL--LLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~l--la~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1058)
+|-++.--............+..-+|||||+.+ +.+...+ ..|.+.++.+|+... +
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------l 226 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------I 226 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------e
Confidence 444443323333333455667888999999852 2344444 367777888776432 2
Q ss_pred cCCCcceEEEEECCCCCEEEEEeC-----CCeEEEEEecCCC--cceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC
Q 001535 403 KDVPISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1058)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~-----dg~i~iwd~~~~~--~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 475 (1058)
....+.....+|||||+.||..+. +..+.+|++.++. ..+. ...++.+.....+|+|||+. ++++...+|
T Consensus 227 t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g 303 (428)
T PRK01029 227 LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDG 303 (428)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCC
Confidence 223344556899999999987653 2234447776532 2221 12233344567899999995 233333566
Q ss_pred cEEEEe--c--CCCeeEEeecccCCeeEEeecccCCceEEEEEeeC---CeEEEEecCCCCceEEeeCCCCcEEEEEEcc
Q 001535 476 LIKVWE--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1058)
Q Consensus 476 ~i~iwd--~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~ 548 (1058)
...+|. . .+.....+..+...+...+|+| ||+.|+..+.+ ..|.+||+.+++.... ......+....|+|
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSp 380 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAI 380 (428)
T ss_pred CceEEEEECcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECC
Confidence 555554 3 2344555655556667778866 66777766543 4689999987765433 32334567899999
Q ss_pred CCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCC
Q 001535 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1058)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~ 596 (1058)
||+.|+..+.. .+...|+++|+.+++........ . .+...+|+|-
T Consensus 381 DG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~ 425 (428)
T PRK01029 381 DSLHLVYSAGN-SNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAF 425 (428)
T ss_pred CCCEEEEEECC-CCCceEEEEECCCCCEEEeecCC-C-cccCceecCC
Confidence 99998876532 34678999999887765544322 2 3455677764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-10 Score=112.34 Aligned_cols=251 Identities=14% Similarity=0.184 Sum_probs=170.0
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCC--cceeeeeecccc------------cCeEEEEeecCCCeeEEEE
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~------------~~v~~l~~s~d~~~~~l~s 470 (1058)
...-|.+|.|..+|.+||+|..+|.|.++.-.... ......++..|. ..|..+.|.+++..-.++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999999999999999999999999654322 122222344454 3688999999887657777
Q ss_pred EeCCCcEEEEe--cCCCee-------------------EEe----------------ecccCCeeEEeecccCCceEEEE
Q 001535 471 CGDDKLIKVWE--LSGRKL-------------------FNF----------------EGHEAPVYSICPHHKENIQFIFS 513 (1058)
Q Consensus 471 ~~~d~~i~iwd--~~~~~~-------------------~~~----------------~~h~~~v~~~~~~~~~~~~~l~s 513 (1058)
.+.|.+|++|. ..+... ..+ .+|+-.|+++.++. |+..+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns--D~Et~lS 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS--DKETFLS 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC--ccceEee
Confidence 88899999998 222111 000 35777788888854 5566665
Q ss_pred EeeCCeEEEEecCCCCceEEee---CCC-----CcEEEEEEccCCC-EEEEEeccCCCCceEEEEeCCCCceee----ee
Q 001535 514 TAIDGKIKAWLYDTMGSRVDYD---APG-----HWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIKR----TY 580 (1058)
Q Consensus 514 ~~~dg~i~~wd~~~~~~~~~~~---~~~-----~~i~~i~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~----~~ 580 (1058)
+ .|=.|.+|+++.......+. .+. .-|++..|+|... .++..+ ..|.|++-|++...+.. .+
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS----SKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS----SKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec----CCCcEEEeechhhhhhcchhhhh
Confidence 4 57889999987655543322 221 2578888999654 344433 38899999998543221 11
Q ss_pred ecccC-----------cceeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeeEeccCCC----------CCCC---ceE
Q 001535 581 AGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DNVNILTSTDAEGG----------LPNL---PRL 635 (1058)
Q Consensus 581 ~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~----------~~~v---~~v 635 (1058)
....+ ..|..+.|+.+|+++++-.. -+|++||+ ...+++.++..|.. ...| .-+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 11111 24666899999999988764 48999999 44566666655431 1112 457
Q ss_pred EeeCCCCEEEEEECCCcEEEEEccCCcc
Q 001535 636 RFSKEGNLLAVTTADNGFKILANAIGLR 663 (1058)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1058)
+|+.++..+++|+..+.++++++..+..
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCCcc
Confidence 8999999999999999999999776633
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-08 Score=100.78 Aligned_cols=300 Identities=10% Similarity=0.115 Sum_probs=184.9
Q ss_pred CCeEEEEecCCCCceE---EeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCC--CCceeee--eecccCccee
Q 001535 517 DGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKRT--YAGFRKKSNG 589 (1058)
Q Consensus 517 dg~i~~wd~~~~~~~~---~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~~--~~~~~~~~i~ 589 (1058)
++-|.+|++++..... .........+-++|+|+++.|.++...+ ..+.|.-|.++ +|++... ...... ..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~-~~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG-EEGGVAAYRIDPDDGRLTFLNRQTLPGS-PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC-CcCcEEEEEEcCCCCeEEEeeccccCCC-CCe
Confidence 5679999998554433 2233455788899999999999887643 25556555554 3554322 222222 336
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECCC-CceeeEeccCCCC----------CCCceEEeeCCCCEEEEEEC-CCcEEEE
Q 001535 590 VVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTSTDAEGGL----------PNLPRLRFSKEGNLLAVTTA-DNGFKIL 656 (1058)
Q Consensus 590 ~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~----------~~v~~v~~s~~~~~l~~~~~-dg~i~iw 656 (1058)
.+++++++++++++. ..|.|.++-+.. |.+........|. ..+-...+.|++++|++..- --.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 799999999999987 568999998855 5443332211111 12678899999999888764 2368888
Q ss_pred EccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCC
Q 001535 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1058)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 736 (1058)
++..+.-... .. .
T Consensus 173 ~~~dg~L~~~--~~--------------------~--------------------------------------------- 185 (346)
T COG2706 173 DLDDGKLTPA--DP--------------------A--------------------------------------------- 185 (346)
T ss_pred EcccCccccc--cc--------------------c---------------------------------------------
Confidence 8875411000 00 0
Q ss_pred CCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeec-cCeeEEeeeeccccCCCCcccccccceeecc
Q 001535 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1058)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~ 815 (1058)
.++ ....-+.++|+|+++......+ +++|.+|..+... |+.. ..
T Consensus 186 -------------------~v~----~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~----g~~~--------~l 230 (346)
T COG2706 186 -------------------EVK----PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV----GKFE--------EL 230 (346)
T ss_pred -------------------ccC----CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC----ceEE--------Ee
Confidence 000 2234578999999999888888 8999999876421 1110 00
Q ss_pred CCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEECC--CceE--EEEecCCCCCeeEEEEecCCCcEEE
Q 001535 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM--TFKV--MTTFMSPPPASTFLAFHPQDNNIIA 889 (1058)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~--~~~~--~~~~~~~~~~i~~l~~s~~~~~~la 889 (1058)
..-..+...+. ......++.+++||++|.++. .+.|.+|.+. ++++ +.....+....+.+.|++ ++++|+
T Consensus 231 Q~i~tlP~dF~---g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Li 306 (346)
T COG2706 231 QTIDTLPEDFT---GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLI 306 (346)
T ss_pred eeeccCccccC---CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEE
Confidence 00011111122 356678899999999999887 3568888765 3432 222333444578899999 888888
Q ss_pred EEECCC-CEEEEEcc--CceeeeEec-ccCCCeeEEEEc
Q 001535 890 IGTEDS-TIHIYNVR--VDEVKSKLK-GHQKRITGLAFS 924 (1058)
Q Consensus 890 sg~~dg-~v~iwd~~--~~~~~~~~~-~h~~~V~~l~~s 924 (1058)
++.+++ +|.+|.+. +|++..... .......||.|.
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 887664 78888765 555433222 233344566654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-10 Score=122.78 Aligned_cols=226 Identities=13% Similarity=0.079 Sum_probs=140.2
Q ss_pred ccCCCcceEEEEECCCCCEEE---EEeCC--CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeC---
Q 001535 402 FKDVPISVSRVAWSPDGNYVG---VAFTK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--- 473 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~la---s~~~d--g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~--- 473 (1058)
+......+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|||||+.+ +++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence 334455667889999998532 33334 357777888776433 33344556678999999952 333322
Q ss_pred -CCcEEEEe-cCC--CeeEEee-cccCCeeEEeecccCCceEEEEEe-eCCeEEEEecC--C-CCceEEeeCCCCcEEEE
Q 001535 474 -DKLIKVWE-LSG--RKLFNFE-GHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD--T-MGSRVDYDAPGHWCTTM 544 (1058)
Q Consensus 474 -d~~i~iwd-~~~--~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~--~-~~~~~~~~~~~~~i~~i 544 (1058)
|..+.+|+ ..+ .....+. ++.......+|+| ||+.|+..+ .+|...+|.+. . +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 33445577 432 2223333 3333445677755 677776655 46766666543 2 22233344444567788
Q ss_pred EEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCceee
Q 001535 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILT 621 (1058)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~ 621 (1058)
.|+|||+.|+..+.. ++...|.+||+.+++....... . ..+....|+|||+.|+.... ...|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999987642 2356899999998876544332 2 24566889999998886543 4579999998877655
Q ss_pred EeccCCCCCCCceEEeeCC
Q 001535 622 STDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~ 640 (1058)
.....+ .+...+|+|-
T Consensus 410 Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 410 IVIGSG---EKRFPSWGAF 425 (428)
T ss_pred eecCCC---cccCceecCC
Confidence 443322 3567788874
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-10 Score=126.75 Aligned_cols=210 Identities=15% Similarity=0.094 Sum_probs=139.0
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC--c
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~ 476 (1058)
+..+...+.+.+|||||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566788999999999999987654 479999998875432 3445666778999999985 334555444 5
Q ss_pred EEEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEee-CC--eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEE
Q 001535 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1058)
Q Consensus 477 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 553 (1058)
|++||..+.....+..+.......+|++ +|+.|+..+. ++ .|.++|+.++.. ..+.........+.|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888944444555555555555667765 6677766554 33 577777765443 3344455567788999999999
Q ss_pred EEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeeEec
Q 001535 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (1058)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~ 624 (1058)
+....+. +...|.+||+.++.... +.... ......|+|++++|+..+.++ .+++.+. ++.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 9887422 23479999998865432 22221 233468999999998877543 4555554 344444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-09 Score=104.20 Aligned_cols=277 Identities=11% Similarity=0.121 Sum_probs=180.1
Q ss_pred CCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeecc---CeeEEeeeeccccCCCCcccccccce
Q 001535 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKATASAVPQ 811 (1058)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~v~vw~~~~~~~~~~g~~~~~~~~~ 811 (1058)
++.|.+|++.+. .+.+..... ....+..+=++++|+++.|.++..+ |.+.-|.+
T Consensus 15 s~gI~v~~ld~~--~g~l~~~~~---v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------ 71 (346)
T COG2706 15 SQGIYVFNLDTK--TGELSLLQL---VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------ 71 (346)
T ss_pred CCceEEEEEeCc--ccccchhhh---ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE------------------
Confidence 477888988732 222222222 2256678889999999999888765 55655554
Q ss_pred eeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEECCC-ceEEE--EecCCCCC----------ee
Q 001535 812 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMT--TFMSPPPA----------ST 876 (1058)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~--~~~~~~~~----------i~ 876 (1058)
|..+|.+....-.. ....+-..++++++|++++++. .|.|.++-+.. |.+.. ....|.+. +.
T Consensus 72 --D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H 148 (346)
T COG2706 72 --DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH 148 (346)
T ss_pred --cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc
Confidence 44444432211110 0233348899999999999997 68899999865 43321 12224443 78
Q ss_pred EEEEecCCCcEEEEEEC-CCCEEEEEccCceeeeEec---ccCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCC--Cce
Q 001535 877 FLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKLK---GHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDT--WEK 949 (1058)
Q Consensus 877 ~l~~s~~~~~~lasg~~-dg~v~iwd~~~~~~~~~~~---~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~--~~~ 949 (1058)
+..+.| ++++|++.+- --.|.+|++..|++...-. .....-..+.|+|++++..... .+++|.+|..+. ++.
T Consensus 149 ~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 149 SANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred eeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 899999 8988887763 3379999999876432211 2334457899999999887665 489999999987 333
Q ss_pred eceEEEecCCCCC--CCCceEEEEcCCCCEEEEEE--CCeEEEEECCCC-eeeeeeccCCCCCCCEEEEEEccCCCEEEE
Q 001535 950 RKSVTIHIPAGKT--PTGDTRVQFNADQVRMLVVH--ETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1058)
Q Consensus 950 ~~~~~~~~~~~~~--~~~v~~l~~s~d~~~l~~~~--d~~v~v~d~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t 1024 (1058)
.....+....... ......+..++||++|.++. ...|.+|.+... ..+........+...-....|+++|++|++
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 2222222222111 15667899999999999984 346888887643 223333222222445688999999999998
Q ss_pred EeCC-CcEEEEeCCC
Q 001535 1025 TFCD-GNIGVFDADT 1038 (1058)
Q Consensus 1025 ~~~d-g~i~iw~~~~ 1038 (1058)
+..+ .+|.+|..+.
T Consensus 308 a~q~sd~i~vf~~d~ 322 (346)
T COG2706 308 ANQKSDNITVFERDK 322 (346)
T ss_pred EccCCCcEEEEEEcC
Confidence 8855 4688887753
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-10 Score=128.00 Aligned_cols=236 Identities=12% Similarity=0.049 Sum_probs=143.1
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEecc--ceEEEEEccCCCccccccceeecccccCcccccccccC
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1058)
+|-.+.--........+...+...+|||||++++.+...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4433333334455566888899999999999654444333 368999998876432 222
Q ss_pred CCcceEEEEECCCCCEEEE-EeCCC--eEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC--cEEE
Q 001535 405 VPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las-~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~i 479 (1058)
..+.+...+|||||+.|+. .+.+| .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 2334557899999999874 44444 5888899887543 24456666778899999995 233333343 5777
Q ss_pred Ee-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeC-C--eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEE
Q 001535 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1058)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 555 (1058)
+| .+++. ..+..........+|++ +|+.++..+.+ + .|.+||+.++..... .. ........|+|||+.++.
T Consensus 316 ~d~~~g~~-~~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRA-ERVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCE-EEeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEE
Confidence 78 55553 33332222233456655 66777766543 3 577888877654332 22 222335689999999988
Q ss_pred EeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcC
Q 001535 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1058)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1058)
.... .+...|.+++... ...+.+..+.+ .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 7642 2345677888753 33334443322 344455654
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=114.70 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=136.1
Q ss_pred eecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeEEee-cccCCeeEEeecccCCceEEEEEeeCCeEEE
Q 001535 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1058)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~ 522 (1058)
.++||.+.|++...-|... -+++.+.|.+++||- ..|+.-..+. ....+++++.+.. +...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence 5779999999988888777 689999999999998 3443322222 2345677777654 5678999999999988
Q ss_pred EecCC----CCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCC
Q 001535 523 WLYDT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1058)
Q Consensus 523 wd~~~----~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1058)
+.+.. ......+..|...+..+.|+-...++++.+. |..+.---.+.+..+..+.-... .....+.- .
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~--~ 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA--L 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--E
Confidence 86543 3333455667789999999999999999874 44443222333333322221110 00111111 1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 599 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+.+.|...|.|....+....+-......++...+.+++|.+....+.+|..|..+.+||+...
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 555566677777766654443333334466778999999999999999999999999998654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-10 Score=128.87 Aligned_cols=222 Identities=17% Similarity=0.126 Sum_probs=141.9
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEecc---ceEEEEEccCCCccccccceeecccccCccccccccc
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1058)
+|-.+.........+.+...+...+|||||++ ||.++.+ ..|.+||+.+++... +.
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~ 230 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQREK--------------------VA 230 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE--------------------ee
Confidence 44333323334555567778999999999996 4544432 489999998875432 22
Q ss_pred CCCcceEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEe-CCC--cE
Q 001535 404 DVPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LI 477 (1058)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~-~d~--~i 477 (1058)
.+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+. |+..+ .++ .|
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~i 304 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQI 304 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceE
Confidence 345566779999999988754 4443 5888898876532 24445555667899999994 44443 333 57
Q ss_pred EEEecCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCC---eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEE
Q 001535 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1058)
Q Consensus 478 ~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 554 (1058)
+++|..+.....+..+...+...+|++ +|++++.++.++ .|.+||+.++.... +.. ........|+|||+.|+
T Consensus 305 y~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 305 YMMDADGGEVRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMIL 380 (417)
T ss_pred EEEECCCCCEEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEE
Confidence 777844444455555556667778865 667888887776 78888887744332 222 22345568999999998
Q ss_pred EEeccCCCCceEEEEeCCCCceeeeee
Q 001535 555 SCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1058)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1058)
...... +...+++.+.. ++....+.
T Consensus 381 ~~~~~~-~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 381 YATTRG-GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEeCC-CcEEEEEEECC-CceeeECC
Confidence 877532 23456666543 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-08 Score=103.74 Aligned_cols=106 Identities=8% Similarity=-0.048 Sum_probs=82.0
Q ss_pred CeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEec------cCCCCceEEEEeCCCCceeeeeecccC------
Q 001535 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEGTIKRTYAGFRK------ 585 (1058)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~~~~~~~~~~~~------ 585 (1058)
++|.+.|.++.+..-.+.....+- .+ ++|||+.++++.. .+..+..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999998877776666544333 34 9999999988864 122467899999999999988875332
Q ss_pred cceeEEEEcCCCCEEEEEe-C-CCcEEEEECCCCceeeEecc
Q 001535 586 KSNGVVQFDTTQNHFLAVG-E-DSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 586 ~~i~~~~~~~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~ 625 (1058)
.....++++|||+++++.. . +..|.+.|+.+++.+..+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 1233688999999999876 3 78999999999999988865
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-10 Score=128.09 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=136.7
Q ss_pred eEEeecCCCcEEEEEeecCCCeEEEEEeccc--eEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEE
Q 001535 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1058)
Q Consensus 337 ~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1058)
....+.+...+.+..|||||++++.+...++ .|.+||+.+++... +..-.+.....+|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~w 269 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRF 269 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeE
Confidence 3444557788999999999997544443333 68888988776422 1111223346899
Q ss_pred CCCCCEEEE-EeCCCe--EEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC--cEEEEe-cCCCeeE
Q 001535 415 SPDGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLF 488 (1058)
Q Consensus 415 spdg~~las-~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd-~~~~~~~ 488 (1058)
||||+.|+. .+.+|. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|+++| .+++ ..
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~-~~ 343 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK-VS 343 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC-EE
Confidence 999998875 455664 777788876532 24455566788999999995 333443344 466667 4454 33
Q ss_pred EeecccCCeeEEeecccCCceEEEEEee-CCe--EEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCce
Q 001535 489 NFEGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1058)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~ 565 (1058)
.+..........+|++ ||++++..+. ++. |.++|++++.... +... .......|+|||+.++..... ++...
T Consensus 344 ~Lt~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~ 418 (448)
T PRK04792 344 RLTFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQV 418 (448)
T ss_pred EEecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceE
Confidence 3332222234456755 6667766654 343 4456666654332 2211 222345799999999877642 23456
Q ss_pred EEEEeCCCCceeeeeecccCcceeEEEEcC
Q 001535 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1058)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1058)
+++++. +|...+.+..+.+ .+...+|+|
T Consensus 419 l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 888886 5555565654433 455566765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-09 Score=112.76 Aligned_cols=285 Identities=13% Similarity=0.214 Sum_probs=183.9
Q ss_pred cEEEEEeecCCCeEEEEEec-----------cceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEE
Q 001535 346 TVISMDFHPSHQTLLLVGSS-----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1058)
.|.-+.|||+.+| |+|-+. ...++|||+.+|.......+ +.+....-.-..|
T Consensus 251 ~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~----------------~~~~~~~WP~frW 313 (698)
T KOG2314|consen 251 GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV----------------IKSPYLKWPIFRW 313 (698)
T ss_pred CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccccchhcceec----------------cCCCccccceEEe
Confidence 6889999999995 677432 25899999999988765221 1112222234789
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCC-----CcEEEEe-cCCCeeE
Q 001535 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGRKLF 488 (1058)
Q Consensus 415 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i~iwd-~~~~~~~ 488 (1058)
|.|++|+|--..| +|.||+..+-..+.. +.+ .-..|....|+|.+. +||-=... ..+.+-. .+++.++
T Consensus 314 S~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iR 387 (698)
T KOG2314|consen 314 SHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIR 387 (698)
T ss_pred ccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCccccCcccCCCcc--eEEEEcccccCCcceEEEEecCccceee
Confidence 9999999977665 599998776332211 111 234688899999987 55532211 2455555 5566665
Q ss_pred EeecccCCeeEEeecccCCceEEEEEe----------eCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEec
Q 001535 489 NFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 558 (1058)
+-.-|. |..+.++...+|.+|+.-- .-..+.|+.++..........-...|...+|-|.|+.+++.+.
T Consensus 388 t~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g 465 (698)
T KOG2314|consen 388 TKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISG 465 (698)
T ss_pred ecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEc
Confidence 544443 4445555566777776422 2223556666655544444444567889999999998877653
Q ss_pred cCCCCceEEEEeCCC-C---ceeeeeecccCcceeEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeEeccCCCCCC
Q 001535 559 SKDGDSFLVEWNESE-G---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1058)
Q Consensus 559 ~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~ 631 (1058)
.+....+.+|.+++ . +++..+.. ...+.+.|+|.|++++.++ ..|.+.++|........ .....|. .
T Consensus 466 -~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~-~~~~eh~-~ 539 (698)
T KOG2314|consen 466 -NTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD-TASPEHF-A 539 (698)
T ss_pred -cccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh-ccCcccc-c
Confidence 23467788888773 2 33444433 3567799999999998864 67899999987433222 2222332 4
Q ss_pred CceEEeeCCCCEEEEEEC------CCcEEEEEccCC
Q 001535 632 LPRLRFSKEGNLLAVTTA------DNGFKILANAIG 661 (1058)
Q Consensus 632 v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~~ 661 (1058)
.+.+.|.|.|+++++++. |...+||+....
T Consensus 540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred cccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 588999999999999876 455777777653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.8e-10 Score=116.50 Aligned_cols=193 Identities=13% Similarity=0.174 Sum_probs=152.7
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEee------c------------CCCeeEEEEEeCCCc
Q 001535 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKL 476 (1058)
Q Consensus 415 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s------~------------d~~~~~l~s~~~d~~ 476 (1058)
.|-+.|+|....||.++|||...++....+.....-++..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3557899999999999999999887655433333334455555553 1 112237888999999
Q ss_pred EEEEe-cCCCeeEEee--cccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEE
Q 001535 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1058)
Q Consensus 477 i~iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 553 (1058)
|.+++ ..|+.-..+. .|.++|.++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 8888777775 5899999998754 44689999999999999998888888888888899999999999999
Q ss_pred EEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCC-----CCEEEEEe-CCCcEEEEECCC
Q 001535 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAVG-EDSQIKFWDMDN 616 (1058)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~-~dg~i~vwd~~~ 616 (1058)
++++ +.|.+||+++++.+.+|.+|.+ .++++.|..+ |.+++++. .+..+.+|-...
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9874 5799999999999999999998 8999999876 67777643 555677776543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-09 Score=113.80 Aligned_cols=192 Identities=17% Similarity=0.274 Sum_probs=149.6
Q ss_pred cCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEE-------------------
Q 001535 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------------------- 414 (1058)
Q Consensus 354 p~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------------------- 414 (1058)
|-+. ++|..+.||.++|||..+++....+.- ...-++.-++.+|
T Consensus 3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred chhh-eEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 3445 689999999999999998876543110 0011223333333
Q ss_pred -CCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeec
Q 001535 415 -SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1058)
Q Consensus 415 -spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~ 492 (1058)
+.|-..++-|...|.|.+|++..|+.-..+ .-..|.+.|.++.++.+-. .|.|++.|+.+..|+ .+++.++.+..
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeecc
Confidence 234557788889999999999998755432 2357999999999998888 899999999999999 88899999999
Q ss_pred ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccC-----CCEEEEEeccCCCCceEE
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLV 567 (1058)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~-----~~~l~~~~~~~~~~~~i~ 567 (1058)
....+.++++++ ||..+++++ +.|++||+++.+....+.+|.++|+++.|..+ |.+++++.. .+..+.
T Consensus 143 ~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~ 215 (541)
T KOG4547|consen 143 QKPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGIT 215 (541)
T ss_pred CCCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---ccccee
Confidence 999999999866 678888776 68999999999999999999999999999887 778877653 355566
Q ss_pred EEeCC
Q 001535 568 EWNES 572 (1058)
Q Consensus 568 ~wd~~ 572 (1058)
+|-.+
T Consensus 216 ~w~v~ 220 (541)
T KOG4547|consen 216 VWVVE 220 (541)
T ss_pred EEEEE
Confidence 67554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-08 Score=112.39 Aligned_cols=306 Identities=10% Similarity=0.028 Sum_probs=182.7
Q ss_pred ceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcc
Q 001535 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587 (1058)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 587 (1058)
+..+++++.+|.+..+|..+++................. ++..+++++ .++.++.+|..+|+.+........ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~ 137 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGT----EKGEVIALDAEDGKELWRAKLSSE-V 137 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEc----CCCEEEEEECCCCcEeeeeccCce-e
Confidence 357888888999999999888887776655542223332 456666665 378999999999998877654322 1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCC---CceEEeeCCCCEEEEEECCCcEEEEEccCCccc
Q 001535 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1058)
Q Consensus 588 i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1058)
...... .+..++.++.+|.|+.||..+|+.+........... ...... .+..++.+..++.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 111112 346788888899999999999998877654322100 011112 1246777888899999998877322
Q ss_pred cccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceee
Q 001535 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1058)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~ 744 (1058)
....... +.+. . ..-++.+.
T Consensus 214 W~~~~~~---------------~~g~-------------------------------------------~-~~~~~~~~- 233 (377)
T TIGR03300 214 WEQRVAL---------------PKGR-------------------------------------------T-ELERLVDV- 233 (377)
T ss_pred eeecccc---------------CCCC-------------------------------------------C-chhhhhcc-
Confidence 2100000 0000 0 00000000
Q ss_pred eeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeee
Q 001535 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (1058)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 824 (1058)
.. ...+ .+..+++++.+|.+..||..+++ .+|....+
T Consensus 234 ------------------~~----~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------ 270 (377)
T TIGR03300 234 ------------------DG----DPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------ 270 (377)
T ss_pred ------------------CC----ccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC------
Confidence 00 0011 13457777778888888754322 23432210
Q ss_pred ccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCC-CCCeeEEEEecCCCcEEEEEECCCCEEEEEc
Q 001535 825 VAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1058)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~ 902 (1058)
.....++ ++..+.+++ +|.+..+|..+++.+...... ......... .+..|++++.+|.|+++|.
T Consensus 271 --------~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 271 --------SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred --------CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEEC
Confidence 0111222 344555555 899999999999887665322 222233333 2447888999999999999
Q ss_pred cCceeeeEecccCCCeeE-EEEcCCCCEEEEEeCCCcEEEE
Q 001535 903 RVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVW 942 (1058)
Q Consensus 903 ~~~~~~~~~~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~iw 942 (1058)
.+|+.+.+++.+...+.. .++. + ..|+.++.||.|+.|
T Consensus 338 ~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 338 EDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 999999888866654333 3333 3 357789999998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=118.11 Aligned_cols=241 Identities=12% Similarity=0.218 Sum_probs=171.0
Q ss_pred cccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCC-Ccce---eeeeecccccCeEEEEeecCCCeeEEEEEeCCCc
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~-~~~~---~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 476 (1058)
.+.||+..|..++--.+.+-+++++.|++|++|.++.. ..+. +..++..|+.+|.++.|..+.+ .++++ ||.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 48899999999888778889999999999999998742 2222 4457889999999999999988 56655 899
Q ss_pred EEEEe-cCCCeeEEee-----cccCCeeEEeecccCCceEEEEE-eeCCeEEEEecCCCCceEEee-----CCCCcEEEE
Q 001535 477 IKVWE-LSGRKLFNFE-----GHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDYD-----APGHWCTTM 544 (1058)
Q Consensus 477 i~iwd-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~-----~~~~~i~~i 544 (1058)
|.+|| .-|+++..+. +..+.|.++ ++-+...++.| +...+|+++|.+..+-...+. ++...+.++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 8887765432 222334443 34344555555 778999999998776554443 344578999
Q ss_pred EEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEE-EECCCCceeeEe
Q 001535 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTST 623 (1058)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~ 623 (1058)
++.+.|+.++++-. +|.|.+.|.++|+.+...+...- ....++ .|..+.++....|.++.+ |...+|......
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998874 88999999999998887664432 111122 345567777778888888 988877765555
Q ss_pred ccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 624 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
+.+.. +.. -...-|.-++++.....+.+|.-
T Consensus 957 kpppe--pah--flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE--PAH--FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc--chh--hhhccCceeEEeccCcEEEEEec
Confidence 43322 111 11123566777777777777754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-08 Score=108.16 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=117.0
Q ss_pred EEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEE
Q 001535 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~ 545 (1058)
.++.++.++.|..+| .+|+.+..+..........+. ++..++.++.++.+..+|.++++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 578888899999999 899988766544322222222 345788889999999999998888776654433222222
Q ss_pred EccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcc----eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 001535 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1058)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 621 (1058)
+ .+..++.+. .++.++.||..+|+.+..+....... ....... +..++.+..+|.++.+|..+|+.+.
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 2 234555554 37889999999999887766433210 0111121 3477888889999999999998776
Q ss_pred EeccCCCC--CC---CceEEeeC--CCCEEEEEECCCcEEEEEccCC
Q 001535 622 STDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 622 ~~~~~~~~--~~---v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
........ .. ...+.-+| .+..+.+++.+|.++.||..++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 54321110 00 00111111 3457777888899999998776
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.3e-10 Score=131.77 Aligned_cols=203 Identities=18% Similarity=0.287 Sum_probs=159.1
Q ss_pred EEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC
Q 001535 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1058)
Q Consensus 338 ~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1058)
+...++-..|.++.=+|... +.+||+.||.|++|.+..+..+.. |+ -.|. ..|+.+.|+..
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQ 2262 (2439)
T ss_pred eEeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhccc
Confidence 34445678899999999998 578999999999999988877643 21 2233 88999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEe---CCCcEEEEe--cCCCeeEEeec
Q 001535 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEG 492 (1058)
Q Consensus 418 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~---~d~~i~iwd--~~~~~~~~~~~ 492 (1058)
|..+..+..||.+.+|.+.. +.+...+.|.....+..|-. . .+++++ .++.+.+|| ..+..-..-..
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred CCceeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeee
Confidence 99999999999999999873 23335778999999999986 3 456654 567999999 44444333388
Q ss_pred ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCC
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1058)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1058)
|.+.++++++.| ..++|++|+.+|.|++||++..+.+..+.. +. ...+++++.. .|.++||++.
T Consensus 2335 H~~gaT~l~~~P--~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP--KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLS 2398 (2439)
T ss_pred cCCCceEEEEcC--cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcc
Confidence 999999999977 458999999999999999987776655543 33 4457777764 8899999999
Q ss_pred CCceeeeeecc
Q 001535 573 EGTIKRTYAGF 583 (1058)
Q Consensus 573 ~~~~~~~~~~~ 583 (1058)
....+.++...
T Consensus 2399 ~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2399 EFGLLHTFPSE 2409 (2439)
T ss_pred ccchhhcCchh
Confidence 88888877654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-07 Score=116.14 Aligned_cols=260 Identities=12% Similarity=0.051 Sum_probs=161.2
Q ss_pred EEEEEecC-cceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEE
Q 001535 768 VRLLYTNS-AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1058)
Q Consensus 768 ~~l~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1058)
..++++++ +...++-..++.|++||.........+.. .......|..-. ..-.....+++++++..|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~------g~~G~~dG~~~~------a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST------GEEGLRDGSFED------ATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC------CCcCCCCCchhc------cccCCCcEEEEeCCCCEE
Confidence 46788875 44555555678888887542211000000 000000111000 022345789999998877
Q ss_pred EEEe--CCcEEEEECCCceEEEEecCC-----------------CCCeeEEEEecCCCcEEEEEECCCCEEEEEccCcee
Q 001535 847 MSAT--GGKISLFNMMTFKVMTTFMSP-----------------PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 907 (1058)
Q Consensus 847 a~~~--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~ 907 (1058)
.++. ++.|+++|..++.. .++.+. -.....++|+|+++.++++.+.++.|++|+..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 6665 56799999877653 333210 112467999996677777778889999999887754
Q ss_pred eeEecc---------c------CCCeeEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeceEEE---------ecC--CC
Q 001535 908 KSKLKG---------H------QKRITGLAFSTSLNIL-VSSGADAQLCVWSIDTWEKRKSVTI---------HIP--AG 960 (1058)
Q Consensus 908 ~~~~~~---------h------~~~V~~l~~s~d~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~---------~~~--~~ 960 (1058)
. .+.+ + -.....++++|||++| ++-+.++.|++||++++......-. ... .+
T Consensus 718 ~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 R-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred E-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 2 2211 1 1234679999999844 5556678999999987653211000 000 00
Q ss_pred C----CCCCceEEEEcCCCCEEEE-EECCeEEEEECCCCeeeeeeccC----------CCCCCCEEEEEEccCCCEEEEE
Q 001535 961 K----TPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQ----------DALSAPISCAVYSCNSQLVFAT 1025 (1058)
Q Consensus 961 ~----~~~~v~~l~~s~d~~~l~~-~~d~~v~v~d~~~~~~~~~~~~~----------~~~~~~v~~l~~s~dg~~l~t~ 1025 (1058)
. .......++++++|..+++ ..++.|++||..++......... .+.......++++++|+++++-
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0 0023468999999987666 36889999999887654332211 0112357789999999988888
Q ss_pred eCCCcEEEEeCCCCeE
Q 001535 1026 FCDGNIGVFDADTLRL 1041 (1058)
Q Consensus 1026 ~~dg~i~iw~~~~~~~ 1041 (1058)
+.++.|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8999999999999864
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-08 Score=95.55 Aligned_cols=190 Identities=17% Similarity=0.115 Sum_probs=136.6
Q ss_pred CCCcEEEEEeec---CCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCC---CcceEEEEECC
Q 001535 343 QGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV---PISVSRVAWSP 416 (1058)
Q Consensus 343 h~~~V~~v~~sp---~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~sp 416 (1058)
.++.+..+.|.- +|...++-+-.+|.|.++.......... ++ -+..- ...-.++.|++
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~--------------~ls~~ki~~~~~lslD~~~ 131 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR--------------GLSSKKISVVEALSLDIST 131 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec--------------ccchhhhhheeeeEEEeec
Confidence 455677777753 4553566667788999987653221110 00 01111 11345788999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-c-CCCeeEE-eecc
Q 001535 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGH 493 (1058)
Q Consensus 417 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~-~~~~~~~-~~~h 493 (1058)
-|..++++..+|.+.+-+...+ .+....+++.|.-..+...|+..... ++++|++|+.+..|| + .++.+.. .+-|
T Consensus 132 ~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH 209 (339)
T KOG0280|consen 132 SGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVH 209 (339)
T ss_pred cCceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceee
Confidence 9999999999999985554433 23344468899999999999987765 899999999999999 4 5555543 5678
Q ss_pred cCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCC
Q 001535 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1058)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~ 551 (1058)
...|.+|.-++. .+.++++|+.|-.|++||.+.......-...++.|..+..+|.-.
T Consensus 210 ~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 210 TSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 999999987654 568999999999999999998777666566668899999998543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-08 Score=95.19 Aligned_cols=247 Identities=11% Similarity=0.041 Sum_probs=156.6
Q ss_pred CCcceEEEEECC---CCC-EEEEEeCCCeEEEEEecCCCcceeeeeeccccc---CeEEEEeecCCCeeEEEEEeCCCcE
Q 001535 405 VPISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLI 477 (1058)
Q Consensus 405 h~~~V~~l~~sp---dg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~l~~s~d~~~~~l~s~~~d~~i 477 (1058)
.+..+..+.|+. +|. .++-+-..|.|.++..........+..+..-.- ...++.|++-+. -++++-.+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcE
Confidence 345677777764 555 566677789999997765433222222222222 245778999888 68888889999
Q ss_pred EEEe-cCCCee--EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCce-EE-eeCCCCcEEEEEEcc-CCC
Q 001535 478 KVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VD-YDAPGHWCTTMLYSA-DGS 551 (1058)
Q Consensus 478 ~iwd-~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~-~~~~~~~i~~i~~s~-~~~ 551 (1058)
.+-+ ...... +.++.|+-+.+...|+.. +.+++++|+.|+.+..||++..... .. ...|...|.++.-+| ++.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 9777 444443 488999999999999755 3479999999999999999944432 22 344666888888876 577
Q ss_pred EEEEEeccCCCCceEEEEeCCC-CceeeeeecccCcceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcee---eEeccC
Q 001535 552 RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL---TSTDAE 626 (1058)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~---~~~~~~ 626 (1058)
++++|+. |..|++||.++ ++++..-.. ++.|..+..+|.-. .++.++.-.-.+|.+...+... ......
T Consensus 225 ~I~TGsY----De~i~~~DtRnm~kPl~~~~v--~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 225 YIATGSY----DECIRVLDTRNMGKPLFKAKV--GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred eEEEecc----ccceeeeehhcccCccccCcc--ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence 8888885 88999999984 555543332 24688888888543 3344444444666666554322 111112
Q ss_pred CCCCCCceEEeeCCCCEEEEEEC-CCcEE-EEEccC
Q 001535 627 GGLPNLPRLRFSKEGNLLAVTTA-DNGFK-ILANAI 660 (1058)
Q Consensus 627 ~~~~~v~~v~~s~~~~~l~~~~~-dg~i~-iw~~~~ 660 (1058)
.|.+-+..-.|......+|+++. |+.++ +|-..+
T Consensus 299 ~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 299 IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 22222333344333356777653 55544 665443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=126.30 Aligned_cols=201 Identities=12% Similarity=0.214 Sum_probs=164.3
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
++.|-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4456678888888999999999999999999999998877655443 33 8899999999999 688888899999999
Q ss_pred cCCCeeEEeecccCCeeEEeecccCCceEEEEEe---eCCeEEEEecCCCCc-eEEeeCCCCcEEEEEEccCCCEEEEEe
Q 001535 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~ 557 (1058)
...++....+.|........|.. ..+++++ .++.+.+||...... -.....|.+.++++++.|..+.+++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 77888888888998888888754 3566654 468899998654332 234477888999999999999999998
Q ss_pred ccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEecc
Q 001535 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 625 (1058)
. +|.|.+||++..+++++++. +. ...++++|+..|.|+||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 4 89999999999888877764 33 457899999999999999988877766543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-08 Score=108.66 Aligned_cols=106 Identities=14% Similarity=0.377 Sum_probs=82.8
Q ss_pred EEEeecCCCeEEEEEec----cceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEE
Q 001535 349 SMDFHPSHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1058)
Q Consensus 349 ~v~~sp~g~~lla~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1058)
-..|+|... ++|+++- .|+|.|| .++|++...-. . .-.+++++|+|..-.||.|
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIf-adtGEPqr~Vt-----------------~---P~hatSLCWHpe~~vLa~g 77 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIF-ADTGEPQRDVT-----------------Y---PVHATSLCWHPEEFVLAQG 77 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEE-ecCCCCCcccc-----------------c---ceehhhhccChHHHHHhhc
Confidence 456899988 6888754 4789888 46777543210 1 1134569999999999999
Q ss_pred eCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 425 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
-.-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|.
T Consensus 78 we~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWR 129 (1416)
T ss_pred cccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEE
Confidence 999999999987754322 3447999999999999999 899999999999998
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-07 Score=89.13 Aligned_cols=207 Identities=16% Similarity=0.205 Sum_probs=141.0
Q ss_pred EEEecCCCEEEEEeCCcEEEEECCCc--eEEEEec---CCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEe
Q 001535 837 IALSKNDSYVMSATGGKISLFNMMTF--KVMTTFM---SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1058)
Q Consensus 837 ~~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~~~---~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~ 911 (1058)
++.+.||++||+..|..|.+-..++. ..+.+.. .....-+.++||| |+.+||.+...|+|+++|+....+. .+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 67889999999999999888776542 2222222 2334578899999 9999999999999999998764432 32
Q ss_pred cc-------cCCCeeEEEEcCCC------CEEEEEeCCCcEEEEECCCCc---eeceEEEecCCCCCCCCceEEEEcCCC
Q 001535 912 KG-------HQKRITGLAFSTSL------NILVSSGADAQLCVWSIDTWE---KRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1058)
Q Consensus 912 ~~-------h~~~V~~l~~s~d~------~~l~s~s~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~l~~s~d~ 975 (1058)
.. -...|.+|.|-+-. ..|+....+|.++-|-+..+. -....... ...+.+.+|.++.+.|.-
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FSSHYPHGINSAVYHPKH 159 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ecccCCCceeEEEEcCCC
Confidence 21 22467777775432 246667788888888764331 11122222 233444889999999999
Q ss_pred CEEEEEE-----C-------CeEEEEECCCCeeeee--------------------------eccCCCCCCCEEEEEEcc
Q 001535 976 VRMLVVH-----E-------TQLAIYDASKMERIRQ--------------------------WTPQDALSAPISCAVYSC 1017 (1058)
Q Consensus 976 ~~l~~~~-----d-------~~v~v~d~~~~~~~~~--------------------------~~~~~~~~~~v~~l~~s~ 1017 (1058)
++|+++. + ..+.-|.+-++.+... +.........|..|..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 8888851 1 1366776544322100 000011256789999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Q 001535 1018 NSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1058)
Q Consensus 1018 dg~~l~t~~~dg~i~iw~~~~~~~~~~~~ 1046 (1058)
||+.||+...+|.|.+|++.+.++...+.
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 99999999999999999999988877665
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-07 Score=103.17 Aligned_cols=213 Identities=15% Similarity=-0.003 Sum_probs=127.0
Q ss_pred ccccCCCCcceEEeecCCCcEEEEEeecCCCeEEEEEec---cceEEEEEccCCCccccccceeecccccCccccccccc
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1058)
+|-.+.--......+.. +.+....|||||+++++..+. +..|.++|+.+|+... +.
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt 229 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IA 229 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------Ee
Confidence 55554433333333333 378899999999863443222 3578999998876532 22
Q ss_pred CCCcceEEEEECCCCCEEEEEe-CC--CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC--cEE
Q 001535 404 DVPISVSRVAWSPDGNYVGVAF-TK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIK 478 (1058)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~-~d--g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~ 478 (1058)
...+.+....|||||+.|+... .+ ..|.++|+.+++. +. +..+........|+|||+.+++.+ ...+ .|.
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~---LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy 304 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQ---ITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIF 304 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EE---cccCCCccCccEECCCCCEEEEEE-CCCCCceEE
Confidence 2445566788999999887543 23 4678888877753 32 433443345568999999744433 2333 577
Q ss_pred EEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeC---------CeEEEEecCCCCceEEeeCCCCcEEEEEEcc
Q 001535 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1058)
Q Consensus 479 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~ 548 (1058)
+.| ..|+. ..+...... ...|+| ||+.++..... ..|.+.|++++.... +... .......|+|
T Consensus 305 ~~dl~~g~~-~rlt~~g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SP 377 (419)
T PRK04043 305 MKKLNSGSV-EQVVFHGKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSS 377 (419)
T ss_pred EEECCCCCe-EeCccCCCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECC
Confidence 778 44444 333222111 236655 66777666544 257777876665432 3222 2334688999
Q ss_pred CCCEEEEEeccCCCCceEEEEeCCC
Q 001535 549 DGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1058)
||+.++..... .+...+.+.++..
T Consensus 378 DG~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 378 DGGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred CCCEEEEEEcc-CCcEEEEEEecCC
Confidence 99998887643 2344577777654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.2e-07 Score=110.65 Aligned_cols=245 Identities=15% Similarity=0.128 Sum_probs=160.2
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEEecCCCcceeeeee-----------cccccCeEEEEeecCCCeeEEEEEeCCCcE
Q 001535 410 SRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-----------DAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1058)
Q Consensus 410 ~~l~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l-----------~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 477 (1058)
..++++++ |+.+++-+.++.|.+||..+ ..+...... .++-.....+++.+++.. ++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889875 66677777888999999864 322211110 011224688999998873 33444445789
Q ss_pred EEEecCCCeeEEeecc-----------------cCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC---
Q 001535 478 KVWELSGRKLFNFEGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--- 537 (1058)
Q Consensus 478 ~iwd~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--- 537 (1058)
+++|..+..+.++.+- -...+.+++++. ++.++++.+.++.|++||..++... .+.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9999544555555321 012356788653 4567778888899999998665432 11111
Q ss_pred ------------CCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecc------------c-C-------
Q 001535 538 ------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------R-K------- 585 (1058)
Q Consensus 538 ------------~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------------~-~------- 585 (1058)
......++++|+++.|+++.. +++.|++||+.++.......+. . +
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 123567999999997776654 5789999999876532111000 0 0
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccC-----------CCCCCCceEEeeCCCCEEEEEECCCcEE
Q 001535 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1058)
Q Consensus 586 ~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 654 (1058)
.....++++++|..+++-..++.|++||..++......... ........++++++|+++++-+.++.|+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 02346889999998888889999999999887665433210 1112457899999999988888999999
Q ss_pred EEEccCC
Q 001535 655 ILANAIG 661 (1058)
Q Consensus 655 iw~~~~~ 661 (1058)
+||+.++
T Consensus 884 vid~~~~ 890 (1057)
T PLN02919 884 YLDLNKG 890 (1057)
T ss_pred EEECCCC
Confidence 9999876
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.4e-09 Score=111.27 Aligned_cols=259 Identities=16% Similarity=0.270 Sum_probs=175.9
Q ss_pred CcceEEeecCCC--cEEEEEeecCCC-eEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceE
Q 001535 334 PRTVAVSLHQGS--TVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1058)
Q Consensus 334 ~~~~~~~~~h~~--~V~~v~~sp~g~-~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1058)
|...-+.+.|-. .|-.+.|||.-. -+-++......-.+|++....... ..-++.||+..|+
T Consensus 55 p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a----------------Ief~lhghsrait 118 (1081)
T KOG0309|consen 55 PFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAIT 118 (1081)
T ss_pred CCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc----------------eEEEEecCcccee
Confidence 444555566544 477888988632 134444556667799986543221 1234889999999
Q ss_pred EEEECCC-CCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCee
Q 001535 411 RVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKL 487 (1058)
Q Consensus 411 ~l~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~ 487 (1058)
.+.|.|. -..+|+++.|..+..||+.+... .+..+..-...-..++|+.... .+.+.+..+.|.+|| ..+.++
T Consensus 119 d~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl 194 (1081)
T KOG0309|consen 119 DINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPL 194 (1081)
T ss_pred ccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcce
Confidence 9999995 56889999999999999987653 3334445556678899998776 456667788999999 566788
Q ss_pred EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEe-eCCCCcEEEEEEccCCCEEEEEeccCCCCceE
Q 001535 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1058)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i 566 (1058)
..+++|...|++++|..... ..+.+++.||+|++||.+........ .....+|..-.+.|-|+-...--.. ++..+
T Consensus 195 ~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~--G~n~v 271 (1081)
T KOG0309|consen 195 CSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV--GGNMV 271 (1081)
T ss_pred EEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc--CCeee
Confidence 99999999999999865433 46889999999999998765544332 2234466666677755533322211 23344
Q ss_pred EEE---------eCCC-CceeeeeecccCcceeEEEEcC----------CCCEEEEEeCCCcEEEEECCC
Q 001535 567 VEW---------NESE-GTIKRTYAGFRKKSNGVVQFDT----------TQNHFLAVGEDSQIKFWDMDN 616 (1058)
Q Consensus 567 ~~w---------d~~~-~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~vwd~~~ 616 (1058)
.++ +..+ .+.+.+|.||.+ .|-...|-. ..-.|++-+.|..+++|-+.+
T Consensus 272 ~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 272 PQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 443 3333 367889999987 333332221 124789999999999998754
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=108.11 Aligned_cols=292 Identities=9% Similarity=0.100 Sum_probs=184.2
Q ss_pred eEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCC-ccccccceeecccccCcccccccccCCCcceEEEEEC
Q 001535 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1058)
Q Consensus 337 ~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1058)
+....+|...|..++--.+.. -++++++|.+|++|.++... .+.+.. | .-.+..|..+|.++.|-
T Consensus 728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsa--------C-----QfTY~aHkk~i~~igfL 793 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSA--------C-----QFTYQAHKKPIHDIGFL 793 (1034)
T ss_pred eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccce--------e-----eeEhhhccCcccceeee
Confidence 344467999999987655555 37889999999999997532 222111 1 12366799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecC-CCeeEEEEEeCCCcEEEEe-cCCCeeEEee--
Q 001535 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-- 491 (1058)
Q Consensus 416 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~-- 491 (1058)
.|-++++++ ||.|++||.--|..+.+...- ...+.+..+...++ .+.++++.++...+|+++| ..+.....++
T Consensus 794 ~~lr~i~Sc--D~giHlWDPFigr~Laq~~da-pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc 870 (1034)
T KOG4190|consen 794 ADLRSIASC--DGGIHLWDPFIGRLLAQMEDA-PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC 870 (1034)
T ss_pred eccceeeec--cCcceeecccccchhHhhhcC-cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec
Confidence 999999876 888999998777665533222 22333444444444 4444555568899999999 7777665554
Q ss_pred ---cccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEE
Q 001535 492 ---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1058)
Q Consensus 492 ---~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1058)
+..+-+.++++.+ .|+.++.+-..|.|.+.|.+++...-.+..-.-....++- |..+.++... -+..+.+
T Consensus 871 na~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sa----ldHslaV 943 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSA----LDHSLAV 943 (1034)
T ss_pred cCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhc----ccceeEe
Confidence 3345678888865 5578999999999999999887765544433222222222 3444454443 2666766
Q ss_pred -EeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeeEeccCCCCCCCceEEeeCCCCE
Q 001535 569 -WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1058)
Q Consensus 569 -wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~~~~ 643 (1058)
|....|........... +... .-.-|..++++.....+.+|.-.. ...+.++....-.+..++++.-|-..-
T Consensus 944 nWhaldgimh~q~kpppe-pahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~a 1020 (1034)
T KOG4190|consen 944 NWHALDGIMHLQDKPPPE-PAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCA 1020 (1034)
T ss_pred eehhcCCeeeeccCCCCc-chhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccch
Confidence 87666655444433222 1111 112355677776666777774221 122333443333445678888886666
Q ss_pred EEEEECCCcEEE
Q 001535 644 LAVTTADNGFKI 655 (1058)
Q Consensus 644 l~~~~~dg~i~i 655 (1058)
+..|...|.|.+
T Consensus 1021 fLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1021 FLAGNEHGAIAL 1032 (1034)
T ss_pred hhccCCCCceee
Confidence 777887887765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-06 Score=88.01 Aligned_cols=187 Identities=11% Similarity=0.110 Sum_probs=131.2
Q ss_pred EEEEecCCCEEEEEe------CCcEEEEECC-CceEEEEecCCCCCeeEEEEecCCCcEEEEEE----------------
Q 001535 836 CIALSKNDSYVMSAT------GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT---------------- 892 (1058)
Q Consensus 836 ~~~~s~dg~~la~~~------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~---------------- 892 (1058)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..|.-.-..+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 578999999999884 2679999999 7788888888776777888999 887777653
Q ss_pred --CCCCEEEEEccCceeeeE--e--cccCCCeeEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeceEEEec--
Q 001535 893 --EDSTIHIYNVRVDEVKSK--L--KGHQKRITGLAFSTSLNILVSSGADA-------QLCVWSIDTWEKRKSVTIHI-- 957 (1058)
Q Consensus 893 --~dg~v~iwd~~~~~~~~~--~--~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~i~iwd~~~~~~~~~~~~~~-- 957 (1058)
.+-++...|..+|+++.+ + ..|...|..|++.++|..++..=..| .|.+++-.. ....+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 223566677888888876 4 34888999999999987776543332 244444433 222211110
Q ss_pred CCCCCCCCceEEEEcCCCCEEEEE--ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001535 958 PAGKTPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1033 (1058)
Q Consensus 958 ~~~~~~~~v~~l~~s~d~~~l~~~--~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~i 1033 (1058)
..... ..+-+|++++++.+++++ ..+.+.+||..+++.+...... .+..++-.+++ ++++.+ .|.+..
T Consensus 212 ~~~l~-~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 212 WRRLN-GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred HHhhC-CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc-eEEeCC-CccEEE
Confidence 00111 678899999999999886 4778999999999998877654 46777776666 555544 554433
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.3e-08 Score=92.79 Aligned_cols=247 Identities=17% Similarity=0.229 Sum_probs=152.0
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCC--cceeeeeecccc------------cCeEEEEeecCCCeeEEEE
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~------------~~v~~l~~s~d~~~~~l~s 470 (1058)
....|+++.|...|.|||+|...|.|.++.-+... ..+-+..+++|. ..|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999765432 122222355564 3588899988766556777
Q ss_pred EeCCCcEEEEecCCCeeEEee----------cccCCeeEEeecccCCceEEE-EEe-eCCeEEEEecCCCCceEEeeCCC
Q 001535 471 CGDDKLIKVWELSGRKLFNFE----------GHEAPVYSICPHHKENIQFIF-STA-IDGKIKAWLYDTMGSRVDYDAPG 538 (1058)
Q Consensus 471 ~~~d~~i~iwd~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~-s~~-~dg~i~~wd~~~~~~~~~~~~~~ 538 (1058)
.+.|++|++|..-.+.+.... ...+++++..- ++. -.+ .|..|.. ..++.....|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~-------l~lprls~hd~iiaa-----~p~rvyaNaH~ 172 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE-------LLLPRLSEHDEIIAA-----KPCRVYANAHP 172 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH-------hhcccccccceEEEe-----ccceeccccce
Confidence 788999999992222211110 01222222110 000 000 0111111 11112224566
Q ss_pred CcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc---eeeeeecccC----cceeEEEEcCCC-CEEEEEeCCCcEE
Q 001535 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRK----KSNGVVQFDTTQ-NHFLAVGEDSQIK 610 (1058)
Q Consensus 539 ~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~----~~i~~~~~~~~~-~~l~~~~~dg~i~ 610 (1058)
..+.++.++.|...++++- +-.|.+|++.--. .+..+..|.- ..|++..|+|.. +.+...+..|.|+
T Consensus 173 yhiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 173 YHINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred eEeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 6789999999999999874 8889999876432 1222222221 257778899865 5666678899999
Q ss_pred EEECCCCce------ee--Eecc------CCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCCcccccccc
Q 001535 611 FWDMDNVNI------LT--STDA------EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1058)
Q Consensus 611 vwd~~~~~~------~~--~~~~------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1058)
+-|++...+ +. .+.. .+-...|..+.|+++|+++++-+. -+|+|||.+.....+++..
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 999873221 11 1111 112346789999999999887654 5899999987765555543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-06 Score=93.94 Aligned_cols=308 Identities=9% Similarity=0.033 Sum_probs=171.5
Q ss_pred eEEEEEeeCCeEEEEecCCCCceEEeeCCCC----------cEE-EEEEccCCCEEEEEeccCCCCceEEEEeCCCCcee
Q 001535 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----------WCT-TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1058)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----------~i~-~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1058)
..+++++.+|.+..+|.++++.......... .+. .+.. ++..++.++ .++.++.+|..+|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EKGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CCCEEEEEECCCCCCc
Confidence 4666777778888888887777766544331 000 1111 344555554 3788999999999998
Q ss_pred eeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCC---CceEEeeCCCCEEEEEECCCcEE
Q 001535 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTADNGFK 654 (1058)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~~~~~dg~i~ 654 (1058)
.+...... ....... .+..+++++.++.|+.+|..+|+.+........... ...... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 87765432 1111112 245778888899999999999999887764321000 011111 233567777888888
Q ss_pred EEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCC
Q 001535 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1058)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1058)
.++..++....+..... +.+..
T Consensus 219 a~d~~~G~~~W~~~~~~---------------~~~~~------------------------------------------- 240 (394)
T PRK11138 219 AVLMEQGQLIWQQRISQ---------------PTGAT------------------------------------------- 240 (394)
T ss_pred EEEccCChhhheecccc---------------CCCcc-------------------------------------------
Confidence 88887773322110000 00000
Q ss_pred CCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeec
Q 001535 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1058)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~ 814 (1058)
..-++++. ....+ + .+..+++++.+|.+..+|..+++ .+|.
T Consensus 241 -~~~~~~~~-------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~ 281 (394)
T PRK11138 241 -EIDRLVDV-------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-------------IVWK 281 (394)
T ss_pred -chhccccc-------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------EEEe
Confidence 00000000 00000 1 13345566667777666543321 1333
Q ss_pred cCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEecCCC-CCeeEEEEecCCCcEEEEEEC
Q 001535 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTE 893 (1058)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~lasg~~ 893 (1058)
...+ . ...+.. .++..++...+|.+..+|..+++.+....... ....+.... ++ .|+.++.
T Consensus 282 ~~~~-----------~---~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~ 343 (394)
T PRK11138 282 REYG-----------S---VNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDS 343 (394)
T ss_pred ecCC-----------C---ccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeC
Confidence 2211 0 111222 23444444458999999999998776543211 122333332 33 5677899
Q ss_pred CCCEEEEEccCceeeeEecccCCCeeE-EEEcCCCCEEEEEeCCCcEEEEEC
Q 001535 894 DSTIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVWSI 944 (1058)
Q Consensus 894 dg~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~iwd~ 944 (1058)
||.+++.|..+|+.+.+.+-....+.+ ..+. +..|+.++.||.|+.++.
T Consensus 344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence 999999999999988776543333332 2222 457888899999988764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-06 Score=93.96 Aligned_cols=197 Identities=9% Similarity=-0.022 Sum_probs=123.3
Q ss_pred ceEEEEECCCCCE-EEEEeCC---CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCC--CcEEEEe
Q 001535 408 SVSRVAWSPDGNY-VGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE 481 (1058)
Q Consensus 408 ~V~~l~~spdg~~-las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd 481 (1058)
.+....|||||+. ++..+.+ ..|.++|+.+++... +....+......|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7788999999985 6644433 568889998876433 3334555677889999986 34444444 4677778
Q ss_pred cCCCeeEEeecccCCeeEEeecccCCceEEEEEee-CC--eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEec
Q 001535 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 558 (1058)
..+.....+..+........|+| ||+.|+..+. .+ .|.+.|++++....... .+.. ...|+|||+.++....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEc
Confidence 44444555655544334456755 6666665553 33 56667776655533222 1211 2489999999988775
Q ss_pred cCC-----CCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 001535 559 SKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNV 617 (1058)
Q Consensus 559 ~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~ 617 (1058)
..+ +...|.+.|+.++.... +.... ......|+|||+.++....+ ..+.+.++...
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRR-LTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEE-CCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 322 12478899998886543 33221 23357899999988876532 34667777543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.8e-07 Score=84.29 Aligned_cols=190 Identities=6% Similarity=-0.033 Sum_probs=129.8
Q ss_pred EEEEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCc-ee-ee-EecccCCCeeEEE
Q 001535 846 VMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EV-KS-KLKGHQKRITGLA 922 (1058)
Q Consensus 846 la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~-~~-~~-~~~~h~~~V~~l~ 922 (1058)
+++..|.++++++++.+..........-.+.++++|+ |++++++.++...|..|.+... +. +. .....++.-.+..
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 3333477777777765433333221222388999999 9999999999999999998753 22 22 2333445567899
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCC--EEEEE-ECCeEEEEECCCCeeeee
Q 001535 923 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV--RMLVV-HETQLAIYDASKMERIRQ 999 (1058)
Q Consensus 923 ~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~--~l~~~-~d~~v~v~d~~~~~~~~~ 999 (1058)
|+.....+|+++.||++.|||++.-...........+.|. +.+..+.||+-|. +|+.+ .-+.+.|.|++++.....
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hn-Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHN-GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCC-CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 9999999999999999999999875443333333333333 8999999998664 33444 457799999999876655
Q ss_pred eccCCC----C-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001535 1000 WTPQDA----L-SAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 1000 ~~~~~~----~-~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
+...+. | ...+..-.|+.++..+.+.+++ .+.-|++..
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 544321 1 2347778888888877777644 356677754
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-08 Score=98.23 Aligned_cols=164 Identities=17% Similarity=0.162 Sum_probs=112.4
Q ss_pred cEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEE--
Q 001535 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV-- 423 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-- 423 (1058)
.+..+..+|+|+ ++|++..+....++++..... ..++++.. .+..-. +++.|-.+......
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~~~---~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPKRP---TAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------ecccCc---ceeeeeeccceEEEEe
Confidence 455666788888 789988888877888765443 12222210 111122 23344444444444
Q ss_pred -EeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEE-eecccCCeeEE
Q 001535 424 -AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-FEGHEAPVYSI 500 (1058)
Q Consensus 424 -~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~-~~~h~~~v~~~ 500 (1058)
++....+.+|....+... .+-||-..+++++|+||++ +++++..|..|+|-. ..-..+.. .-||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 344556666666654433 2559999999999999999 899999999999977 44444444 35799999999
Q ss_pred eecccCCceEEEEEeeCCeEEEEecCCCCceEEee
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 535 (1058)
++.+ +..|++++.|+++++||+.+++.+..+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9753 3579999999999999999888764443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.8e-06 Score=90.67 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=112.2
Q ss_pred EEEEEeCCCcEEEEe-cCCCeeEEeecccC--Cee-----EEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCC
Q 001535 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVY-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 538 (1058)
.++.++.++.+.-+| .+|+.+-+...... ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466777788888889 78888765432210 000 0000011123467788899999999999999888776554
Q ss_pred CcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcc----eeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001535 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1058)
Q Consensus 539 ~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~vwd~ 614 (1058)
....+..+. ++ .++++. .++.+..+|..+|+.+..+....... ...-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 33 455444 37889999999999988776432100 011111 2346777888999999999
Q ss_pred CCCceeeEeccCCCC--C---CCceEEeeC--CCCEEEEEECCCcEEEEEccCC
Q 001535 615 DNVNILTSTDAEGGL--P---NLPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 615 ~~~~~~~~~~~~~~~--~---~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
.+|+.+......... . ....+..+| .+..++.++.+|.+..+|..++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 999876654321110 0 011111222 3456667777888888888776
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.3e-08 Score=97.67 Aligned_cols=166 Identities=14% Similarity=0.228 Sum_probs=115.1
Q ss_pred cEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCE
Q 001535 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1058)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1058)
....+..+++++.++.+..+....++++..... ..++++.. . ....-+++.|-.+...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----------~~kl~~~~---------~---v~~~~~ai~~~~~~~s 121 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK----------GAKLLDVS---------C---VPKRPTAISFIREDTS 121 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC----------cceeeeEe---------e---cccCcceeeeeeccce
Confidence 344556677777777777777766776554321 11122211 1 2233344555555555
Q ss_pred EEEEe-C---CcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEe-cccCCCeeE
Q 001535 846 VMSAT-G---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGHQKRITG 920 (1058)
Q Consensus 846 la~~~-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~ 920 (1058)
+..+. - ..+.+|....+.+ ..+-||-..++.++||| |+++|.++..|..|+|-.+...-.+..+ -||+.-|..
T Consensus 122 v~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 122 VLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVST 199 (390)
T ss_pred EEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheee
Confidence 44443 2 4467777666444 34557999999999999 8899999999999999887766555555 479999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEe
Q 001535 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956 (1058)
Q Consensus 921 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 956 (1058)
++.-++ ..|+|+|.|++|++||+.+|+++..+.+.
T Consensus 200 isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 200 ISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred eeeccC-ceeeecCCCCcEEEEecccCCcccccchh
Confidence 998865 56999999999999999999988766554
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-07 Score=92.12 Aligned_cols=256 Identities=14% Similarity=0.120 Sum_probs=174.1
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
-|.+.|+.|.-+-.. ++.+++.||.++.|.-..-..+. | ...+..|-+.|.+++.|-||..+
T Consensus 7 mhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---f-------------VKhFraHL~~I~sl~~S~dg~L~ 68 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---F-------------VKHFRAHLGVILSLAVSYDGWLF 68 (558)
T ss_pred cccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---e-------------hhhhHHHHHHHHhhhccccceeE
Confidence 478888887766553 78999999999999754311111 0 01266789999999999999999
Q ss_pred EEEeC-CCeEEEEEecCCCcceeeeeecccccCeEEEEeecC-CCeeEEEEEeCCCcEEEEe--cCCCee-EEeecccCC
Q 001535 422 GVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE--LSGRKL-FNFEGHEAP 496 (1058)
Q Consensus 422 as~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd--~~~~~~-~~~~~h~~~ 496 (1058)
.|++. |..++++|+++-..+..+. +..-.+.+..+ .++. -..++-++.-.++.+.++| .++.+. ..-.-|..+
T Consensus 69 ~Sv~d~Dhs~KvfDvEn~DminmiK-L~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 69 RSVEDPDHSVKVFDVENFDMINMIK-LVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred eeccCcccceeEEEeeccchhhhcc-cccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 99877 9999999998765543221 22222222222 2221 1212344555678999999 444333 444559999
Q ss_pred eeEEeecccCCceEEEEEeeCCeEEEEecCC------CCceE---------EeeCCCCcEEEEEEccCCCEEEEEeccCC
Q 001535 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRV---------DYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1058)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~~---------~~~~~~~~i~~i~~s~~~~~l~~~~~~~~ 561 (1058)
|..+.+.+.. +.+++....|.|..|.... ..... .+........++.|+|+|..+.+.+
T Consensus 147 V~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---- 220 (558)
T KOG0882|consen 147 VKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---- 220 (558)
T ss_pred eEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC----
Confidence 9999997754 5788999999999998763 11111 1122234678999999999999887
Q ss_pred CCceEEEEeCCCCceeeeeec--------------------------------ccCcceeEEEEcCCCCEEEEEeCCCcE
Q 001535 562 GDSFLVEWNESEGTIKRTYAG--------------------------------FRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1058)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~--------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1058)
.+..|++++..+|+.++.+.. +.......+.|...+++|+.++-=| |
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence 489999999999887765532 1111223467888899999887654 8
Q ss_pred EEEECCCCceeeEec
Q 001535 610 KFWDMDNVNILTSTD 624 (1058)
Q Consensus 610 ~vwd~~~~~~~~~~~ 624 (1058)
++.++.++.....+.
T Consensus 300 kvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 300 KVINLDTNTVVRILG 314 (558)
T ss_pred EEEEeecCeEEEEec
Confidence 889998888776653
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=102.79 Aligned_cols=293 Identities=13% Similarity=0.164 Sum_probs=184.8
Q ss_pred EeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCC--CcceEEEEECC
Q 001535 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSP 416 (1058)
Q Consensus 339 ~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp 416 (1058)
..+.-.+++.++.++|.|+- +|.++.-|. .+-|+...-.. .....| .-.|-.+.|||
T Consensus 19 lsl~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~p-------------------pr~l~h~tpw~vad~qws~ 77 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTP-------------------PRWLHHITPWQVADVQWSP 77 (1081)
T ss_pred eEEEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCC-------------------ceeeeccCcchhcceeccc
Confidence 33445678999999999995 677766554 45565432111 012223 23566788888
Q ss_pred CC--CEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe--cCCCeeEEeec
Q 001535 417 DG--NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEG 492 (1058)
Q Consensus 417 dg--~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~ 492 (1058)
.. .+-++......-.+|++.....-..-..+.+|+..|+++-|.|+... ++++++.|..+..|| .-..++..+..
T Consensus 78 h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~ 156 (1081)
T KOG0309|consen 78 HPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSS 156 (1081)
T ss_pred CCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeec
Confidence 43 34444445555779998755443333357799999999999998876 899999999999999 44566676666
Q ss_pred ccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCce-EEeeCCCCcEEEEEEccC-CCEEEEEeccCCCCceEEEEe
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWN 570 (1058)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~i~~i~~s~~-~~~l~~~~~~~~~~~~i~~wd 570 (1058)
-...-..+.|+.. ++. +.+.+..+.|++||.+.+... ..+.++...|..+.|..- ...+.+++ .|++|..||
T Consensus 157 w~s~asqVkwnyk-~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~tvkfw~ 230 (1081)
T KOG0309|consen 157 WRSAASQVKWNYK-DPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDGTVKFWD 230 (1081)
T ss_pred ccccCceeeeccc-Ccc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCCceeeec
Confidence 5666777888764 333 445567788999999877654 456666677888877653 23444444 499999999
Q ss_pred CCCCceeeeeecccCcceeEEEEcCCCCEEEE--EeCCCcEEEE---------ECCC-CceeeEeccCCCCCCCceEEee
Q 001535 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VGEDSQIKFW---------DMDN-VNILTSTDAEGGLPNLPRLRFS 638 (1058)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~vw---------d~~~-~~~~~~~~~~~~~~~v~~v~~s 638 (1058)
...........-..+.++..-++.|-|.-.+. --.+..+.++ +..+ .+++..+.+| ...|...-|-
T Consensus 231 y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH--~D~V~eFlWR 308 (1081)
T KOG0309|consen 231 YSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH--DDVVLEFLWR 308 (1081)
T ss_pred ccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc--chHHHHHhhh
Confidence 87654333333333335555556664432222 1112233333 3322 2455666544 3345444442
Q ss_pred CC----------CCEEEEEECCCcEEEEEccCC
Q 001535 639 KE----------GNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 639 ~~----------~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
.. .-.|++-+.|.++++|-+.+.
T Consensus 309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 21 236899999999999988653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-05 Score=82.08 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=120.6
Q ss_pred eeEEEEe-cCCCEEEEEeCCcEEEEECCCceEEEEecC-----CCCCeeEEEEecCCCcEEEEEECC--------CCEEE
Q 001535 834 VPCIALS-KNDSYVMSATGGKISLFNMMTFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGTED--------STIHI 899 (1058)
Q Consensus 834 v~~~~~s-~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~lasg~~d--------g~v~i 899 (1058)
...+++. +++++ +++..+.+.++|..+++....... .....+.+++.| +|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEE-EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEE-EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 6677887 56555 455555666669988865433332 334688999999 88887776644 44666
Q ss_pred EEccCceeeeEecccCCCeeEEEEcCCCCEEE-EEeCCCcEEEEECCCCce-ec-eEEEecCCCCCCCCceEEEEcCCCC
Q 001535 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILV-SSGADAQLCVWSIDTWEK-RK-SVTIHIPAGKTPTGDTRVQFNADQV 976 (1058)
Q Consensus 900 wd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~iwd~~~~~~-~~-~~~~~~~~~~~~~~v~~l~~s~d~~ 976 (1058)
++.. ++...... .-...+.++|+||++.|. +-+..+.|..++++.... +. ........... +..-.+++..+|+
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGN 196 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCC
Confidence 6766 55433333 456678999999998775 556778899999864332 21 11121111111 3467899999999
Q ss_pred EEEEE-ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEc-cCCCEEEEEe
Q 001535 977 RMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYS-CNSQLVFATF 1026 (1058)
Q Consensus 977 ~l~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~t~~ 1026 (1058)
+.++. ..+.|.+++.+ |+.+..+... ...+++++|. ++.+.|++.+
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEECCCCCEEEEEe
Confidence 87775 68899999987 8888887765 3589999994 6767666554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-05 Score=78.43 Aligned_cols=225 Identities=13% Similarity=0.195 Sum_probs=135.1
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCC--CcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEE
Q 001535 412 VAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (1058)
Q Consensus 412 l~~spdg~~las~~~dg~i~iwd~~~~--~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 489 (1058)
++.++||+.||+- .|..|.|=..+.. ..+.....-+.....-.-++||||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 5778899999876 4666777655432 11121111222334567899999999 89999999999999977776665
Q ss_pred eecc-------cCCeeEEeecccCC----ceEEEEEeeCCeEEEEecCCC-----CceEEeeC---CCCcEEEEEEccCC
Q 001535 490 FEGH-------EAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTM-----GSRVDYDA---PGHWCTTMLYSADG 550 (1058)
Q Consensus 490 ~~~h-------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~~---~~~~i~~i~~s~~~ 550 (1058)
+... ...|..+.|..... ...|++...+|.++-|-+..+ .....+.. ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 5432 23455666643221 125777778888887765332 12223332 35589999999999
Q ss_pred CEEEEEeccCCCCc-------eEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCC------cEEEEECCCC
Q 001535 551 SRLFSCGTSKDGDS-------FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS------QIKFWDMDNV 617 (1058)
Q Consensus 551 ~~l~~~~~~~~~~~-------~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~ 617 (1058)
++|+++|....+++ -+..|.+-++. |.... +...+|+ +..+|.+-+.
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~-------------------Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDS-------------------PYYKQ-VTSSEDDITASSKRRGLLRIPSF 219 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCC-------------------CcEEE-ccccCccccccccccceeeccce
Confidence 99988875332221 12222222111 11111 1111111 1223443332
Q ss_pred ceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 618 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+..... ......|..+..||||..||+...+|.|.+|++.+-
T Consensus 220 ~~fs~~--~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 220 KFFSRQ--GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred eeeecc--ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 222211 122446899999999999999999999999999764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-06 Score=83.74 Aligned_cols=210 Identities=16% Similarity=0.174 Sum_probs=148.7
Q ss_pred CCeeEEEEec-CCCEEEEEe-CCc-EEEEECCCceEEEEecCCCCC--eeEEEEecCCCcEEEEEEC-----CCCEEEEE
Q 001535 832 EAVPCIALSK-NDSYVMSAT-GGK-ISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTE-----DSTIHIYN 901 (1058)
Q Consensus 832 ~~v~~~~~s~-dg~~la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~lasg~~-----dg~v~iwd 901 (1058)
.....++.+| ++..++.+- -|+ ..+||..+++....+....++ --.-+||+ ||++|.+.-+ .|.|-|||
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEE
Confidence 3455688888 556666776 455 899999999988877654443 23478999 8998887643 47899999
Q ss_pred cc-CceeeeEecccCCCeeEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeceEEEecCCCCC
Q 001535 902 VR-VDEVKSKLKGHQKRITGLAFSTSLNILVSSGA------------------DAQLCVWSIDTWEKRKSVTIHIPAGKT 962 (1058)
Q Consensus 902 ~~-~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 962 (1058)
.. +.+.+.++..|.-.-..+.+.|||+.|+.+-. +-.+..-|..+|+.+....+. ...+
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~~ 161 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDLH 161 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--cccc
Confidence 99 66888889887766778899999988887632 234667788888877665442 1222
Q ss_pred CCCceEEEEcCCCCEEEEEE------CCe--EEEEECCCCeeeeeeccCC----CCCCCEEEEEEccCCCEEEEEe-CCC
Q 001535 963 PTGDTRVQFNADQVRMLVVH------ETQ--LAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF-CDG 1029 (1058)
Q Consensus 963 ~~~v~~l~~s~d~~~l~~~~------d~~--v~v~d~~~~~~~~~~~~~~----~~~~~v~~l~~s~dg~~l~t~~-~dg 1029 (1058)
...+..+++.++|..++... +.. |.+++- ++.+..+.... ....-+-+|+++.+|.++++.+ .-+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 27789999999999888752 111 334443 33333332221 1256789999999999887665 678
Q ss_pred cEEEEeCCCCeEEEEEc
Q 001535 1030 NIGVFDADTLRLRCYIA 1046 (1058)
Q Consensus 1030 ~i~iw~~~~~~~~~~~~ 1046 (1058)
.+.+||..+|+++....
T Consensus 240 ~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEEECCCCCEeeccc
Confidence 89999999999986554
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.0015 Score=74.88 Aligned_cols=598 Identities=12% Similarity=0.081 Sum_probs=287.1
Q ss_pred EEEEeecCCCeEEEEEeccceEEEEEcc-CCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeC
Q 001535 348 ISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1058)
Q Consensus 348 ~~v~~sp~g~~lla~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 426 (1058)
..-..+++|.+ ...|..+|.+...-+. +++.+.....++ ..-|...-..|+..-++| .|.+|+.
T Consensus 261 ~~~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lkv-------------e~lge~siassi~~L~ng-~lFvGS~ 325 (1096)
T KOG1897|consen 261 CYGRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLKV-------------EYLGETSIASSINYLDNG-VLFVGSR 325 (1096)
T ss_pred EcccccCCccE-EEEecCCCcEEEEEeecccccccceEEEE-------------EecCCcchhhhhhcccCc-eEEEecc
Confidence 33456778885 4566788877766555 555443211111 133455556667666555 7777887
Q ss_pred CCeEEEEEecCCCcc----eeeeeecccccCeEEEEeecC---CCeeEEEEEe---CCCcEEEEe--cCCCe--eEEeec
Q 001535 427 KHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG---DDKLIKVWE--LSGRK--LFNFEG 492 (1058)
Q Consensus 427 dg~i~iwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~d---~~~~~l~s~~---~d~~i~iwd--~~~~~--~~~~~~ 492 (1058)
-|.=.+-.+.+.... ..+.++ ..-++|.++..-.. ++. .++||+ .||++++.. ..=.. ...+.|
T Consensus 326 ~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G 403 (1096)
T KOG1897|consen 326 FGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG 403 (1096)
T ss_pred CCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecCC
Confidence 766555555433221 111111 23457888876543 232 455554 578999987 22122 233444
Q ss_pred ccCCeeEEe--ecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEcc-CCCEEEEEeccCCCCceEEEE
Q 001535 493 HEAPVYSIC--PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEW 569 (1058)
Q Consensus 493 h~~~v~~~~--~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~~~~~~~~i~~w 569 (1058)
-..++.+. +.++.|. +++.+-.+.+ ++..+...-......+-......+..|. .|+.++-.. ...|+++
T Consensus 404 -ikg~w~lk~~v~~~~d~-ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl~ 475 (1096)
T KOG1897|consen 404 -IKGMWSLKSMVDENYDN-YLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRLV 475 (1096)
T ss_pred -ccceeEeeccccccCCc-EEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEEE
Confidence 33466666 5555554 4444433332 3333332211111111111222222221 333333332 4457777
Q ss_pred eCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCC------CE
Q 001535 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG------NL 643 (1058)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~------~~ 643 (1058)
+-. .....+....+ ++....+.+...++.++.++.+...+...+.+ .....+.-...|.|+.++|-| ++
T Consensus 476 ss~--~~~~~W~~p~~--~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~~ 550 (1096)
T KOG1897|consen 476 SSA--GLRSEWRPPGK--ITIGVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSRL 550 (1096)
T ss_pred cch--hhhhcccCCCc--eEEEEEeecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcceE
Confidence 644 22333333332 33444445556788888888888888776663 222223334468999999742 37
Q ss_pred EEEEECCCcEEEEEccCCcccccc--ccCCCcccccCcccceeeeeccccccccCCCCcceeeccCCCCCCccccCCCCC
Q 001535 644 LAVTTADNGFKILANAIGLRSLRA--VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1058)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1058)
+++|..+..+.+.-.-........ +.+...+ + .|--..+-
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iP--R-SIl~~~~e----------------------------------- 592 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQLSGEIIP--R-SILLTTFE----------------------------------- 592 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeeccCCCccc--h-heeeEEee-----------------------------------
Confidence 888887766655433222111110 1110000 0 01111111
Q ss_pred CCCCCCCcccCCCCCCCCcceeeee--ecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeec---------cCeeEE
Q 001535 722 SRSMDKPRTVDDVTDKPKPWQLAEI--VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS---------NGVQKL 790 (1058)
Q Consensus 722 ~~~~~~~~~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~---------dg~v~v 790 (1058)
.+..++.++..||.+.-+.+... ...... ...+ ...++.--.|+..++.-+.+.+ +|.+.+
T Consensus 593 --~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K-k~~l-----Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 593 --GDIHYLLVALGDGALLYFVLDINTGQLSDRK-KVTL-----GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred --ccceEEEEEcCCceEEEEEEEcccceEcccc-cccc-----CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 22445555666666555544321 100000 0000 1112222223222222222222 222222
Q ss_pred eeeecccc------C----CCCcccccc-cceeeccCC--CceeeeeccCCCCCCCeeEEEEecCCCEEEEEeC------
Q 001535 791 WKWHRNEQ------N----PSGKATASA-VPQHWLPSS--GLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG------ 851 (1058)
Q Consensus 791 w~~~~~~~------~----~~g~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d------ 851 (1058)
-.++.... + +++-..+.. .+.+..... ...++ .+ +.......+++.+....+++.++
T Consensus 665 spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~ir-tv---pl~~~prrI~~q~~sl~~~v~s~r~e~~~ 740 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIR-TV---PLGESPRRICYQESSLTFGVLSNRIESSA 740 (1096)
T ss_pred eccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhccee-ee---cCCCChhheEecccceEEEEEecccccch
Confidence 22221110 0 001000000 111111110 00111 11 13445566777664444444431
Q ss_pred C---------cEEEEECCCceEEEEecCCC----CCeeEEEEecCCCcEEEEEE----------CCCCEEEEEccCceee
Q 001535 852 G---------KISLFNMMTFKVMTTFMSPP----PASTFLAFHPQDNNIIAIGT----------EDSTIHIYNVRVDEVK 908 (1058)
Q Consensus 852 g---------~i~vwd~~~~~~~~~~~~~~----~~i~~l~~s~~~~~~lasg~----------~dg~v~iwd~~~~~~~ 908 (1058)
+ .++++|-.+.+.+...+-.. ..+.+..|..+.+.++++|. ..|.|.|+.+..+..+
T Consensus 741 ~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 741 EYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred hhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 1 27788888777655443211 13455568773378888886 3578888888874333
Q ss_pred eEecc--cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEE-CCe
Q 001535 909 SKLKG--HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQ 985 (1058)
Q Consensus 909 ~~~~~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d~~ 985 (1058)
..... -++.+.++..- +|++||. -...|++|+..+.+.+... ..+. .++..+...-.|..+++|. -++
T Consensus 821 ~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e-----~~~~-~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIE-----CNIS-NPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred eeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhh-----hccc-CCeEEEEEEecCcEEEEeeccce
Confidence 33322 23455555432 4666664 4567999999987533322 2222 7788899999999999984 455
Q ss_pred EEE--EECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001535 986 LAI--YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 986 v~v--~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
+.+ |+-..|..... +.+.+....+++.+-.+..++. +..+|.+++-..+
T Consensus 892 itll~y~~~eg~f~ev--ArD~~p~Wmtaveil~~d~ylg-ae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 892 ITLLQYKGDEGNFEEV--ARDYNPNWMTAVEILDDDTYLG-AENSGNLFTVRKD 942 (1096)
T ss_pred EEEEEEeccCCceEEe--ehhhCccceeeEEEecCceEEe-ecccccEEEEEec
Confidence 554 44444333332 2334467788888776655544 4457777766554
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0018 Score=74.21 Aligned_cols=595 Identities=12% Similarity=0.088 Sum_probs=289.1
Q ss_pred EeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC-
Q 001535 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1058)
Q Consensus 339 ~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1058)
..++..+-..|+..-++| +|.+||.-|.=.+-.+.+.....++ ..+. + .+ ..-++|..++.-.+
T Consensus 301 e~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy-~~il---------e--t~-~NLgPI~Dm~Vvd~d 365 (1096)
T KOG1897|consen 301 EYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY-VVIL---------E--TF-VNLGPIVDMCVVDLD 365 (1096)
T ss_pred EecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch-hhhh---------h--hc-ccccceeeEEEEecc
Confidence 345566667778888888 5888988776667666554333110 0000 0 01 12347777776442
Q ss_pred ---CCEEEEEe---CCCeEEEEEecCCCcceeeeeecccccCeEEEE--eecCCCeeEEEEEeCCCcEEEEecCCCee-E
Q 001535 418 ---GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRKL-F 488 (1058)
Q Consensus 418 ---g~~las~~---~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~ 488 (1058)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-. +.-++...+++.. .
T Consensus 366 ~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~ 442 (1096)
T KOG1897|consen 366 RQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEET 442 (1096)
T ss_pred ccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEe
Confidence 34566654 488999875433322122223555 34577777 4443332 3333332 3334444333311 1
Q ss_pred EeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEE
Q 001535 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1058)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1058)
...+-......+..+.. +++.|+-. ....||+++-. .....+...++ ++..+.+.+...++.++ +++.+..
T Consensus 443 ~~~gf~~~~~Tif~S~i-~g~~lvQv-Ts~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~----~~~~l~y 513 (1096)
T KOG1897|consen 443 EDPGFSTDEQTIFCSTI-NGNQLVQV-TSNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAG----GGLALFY 513 (1096)
T ss_pred ccccccccCceEEEEcc-CCceEEEE-ecccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEec----CccEEEE
Confidence 22222233333333322 22232222 23456666533 23333443443 33333334444555554 2566766
Q ss_pred EeCCCCceeeeeecccCcceeEEEEcCCC------CEEEEEeCCCcEE-EEECCCCceeeEeccCCC--CCCCceEEeeC
Q 001535 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIK-FWDMDNVNILTSTDAEGG--LPNLPRLRFSK 639 (1058)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~--~~~v~~v~~s~ 639 (1058)
.++..+.+...........+.|+.++|-| +++++|..+..+. +.-..+...+........ ...|.-..+-.
T Consensus 514 ~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 514 LEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG 593 (1096)
T ss_pred EEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec
Confidence 77766653333333333468888888742 2566776544443 334444444443322221 22344555666
Q ss_pred CCCEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeeeccc----------cccccCCCCcceeeccCCC
Q 001535 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS----------SAVSSGTPANCKVERSSPV 709 (1058)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~----------~l~~~~~~~~~~~~~~~~~ 709 (1058)
|..+|.++..||.+.-+.+....-.....+..... ..|+.--.|+..++ .+.++...+.......
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG--t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls--- 668 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG--TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLS--- 668 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEcccceEccccccccC--CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccc---
Confidence 78899999999988766554332111111100000 01111112222111 1111111111110000
Q ss_pred CCCccccCCCCCCCC-CCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCee
Q 001535 710 RPSPIINGVDPTSRS-MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (1058)
Q Consensus 710 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v 788 (1058)
.+.+...+.-.++ -...++.+. .+.+++..++.. +++...++| -....+.+++.+....+.+.+..+..
T Consensus 669 --~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~i---qkl~irtvp----l~~~prrI~~q~~sl~~~v~s~r~e~ 738 (1096)
T KOG1897|consen 669 --LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEI---QKLHIRTVP----LGESPRRICYQESSLTFGVLSNRIES 738 (1096)
T ss_pred --hHHhhhhcccccccCCceEEEec-CCceEEEEecch---hhcceeeec----CCCChhheEecccceEEEEEeccccc
Confidence 0000000000011 111222222 245555554432 122222222 22345667777644444433332111
Q ss_pred EEeeeeccccCCCCcccccccceeeccCCCceeeee-ccCCCCCCCeeEEEEecC-CCEEEEEe-----------CCcEE
Q 001535 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND-VAGVNLEEAVPCIALSKN-DSYVMSAT-----------GGKIS 855 (1058)
Q Consensus 789 ~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~d-g~~la~~~-----------dg~i~ 855 (1058)
.. . ..+.......++++|..+-+.+... +...+....+.++.|..| +.++++|. .|.|.
T Consensus 739 ~~------~--~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIi 810 (1096)
T KOG1897|consen 739 SA------E--YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRII 810 (1096)
T ss_pred ch------h--hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEE
Confidence 10 0 0122222234556676665544321 111111222344457777 78888773 26789
Q ss_pred EEECCCceEEEEecCC--CCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEE
Q 001535 856 LFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS 933 (1058)
Q Consensus 856 vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~ 933 (1058)
|+....++.+.....+ .+.+.++..- +|++||. -+..|++|++.+.+.++.-..|..++..+...-.|..++.|
T Consensus 811 vfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~Vg 886 (1096)
T KOG1897|consen 811 VFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVG 886 (1096)
T ss_pred EEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEe
Confidence 9988774444443322 3445444433 6777763 36789999999997777777788999999999999999999
Q ss_pred eCCCcEEEEECC--CCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECC
Q 001535 934 GADAQLCVWSID--TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1058)
Q Consensus 934 s~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~ 992 (1058)
..-+.+.+--.+ .|..... .....+...+++.+-.+..++.+-.++.+.+...+
T Consensus 887 Dlm~Sitll~y~~~eg~f~ev-----ArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 887 DLMRSITLLQYKGDEGNFEEV-----ARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eccceEEEEEEeccCCceEEe-----ehhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 888876665444 3322211 11222366778888888888877667766655443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-06 Score=91.26 Aligned_cols=221 Identities=15% Similarity=0.146 Sum_probs=130.3
Q ss_pred eEEEEECCCCCEEEEEe----CCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cC
Q 001535 409 VSRVAWSPDGNYVGVAF----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1058)
Q Consensus 409 V~~l~~spdg~~las~~----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~ 483 (1058)
-+-.+|+|...++|+++ ..|+|.|| .++|+.-+.. +..- .+++++|+|..- +|+.|=.-|.+.+|. .+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 34467999998988876 35888888 4556543321 2222 367799999876 788888899999999 44
Q ss_pred CCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC----CC--cEEEEEEccCCCEE----
Q 001535 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GH--WCTTMLYSADGSRL---- 553 (1058)
Q Consensus 484 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----~~--~i~~i~~s~~~~~l---- 553 (1058)
.+.-.....|..+|..+.|++ +|..++++..-|.|.+|..+..+.......- +. ...+...++++.-+
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 444444567999999999966 6689999999999999988754433222111 11 23445556664321
Q ss_pred --EEEeccCCCCceEE-EEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCC
Q 001535 554 --FSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1058)
Q Consensus 554 --~~~~~~~~~~~~i~-~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 630 (1058)
++.+ | +..+- .++.+.....+... -.-.|+|..++.++.+|+|+-.|- .|+..........
T Consensus 169 KaaVtg---D-e~alD~~fnwk~~~a~rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTG---D-ESALDEPFNWKESLAERSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccC---c-hhhhcccccCccchhhcccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 2221 1 11111 11111000000000 112467888999999999988874 4555555443321
Q ss_pred CCceEEeeCCCCEEEEEECCCcEEEE
Q 001535 631 NLPRLRFSKEGNLLAVTTADNGFKIL 656 (1058)
Q Consensus 631 ~v~~v~~s~~~~~l~~~~~dg~i~iw 656 (1058)
..+-|.+...-+++...+-.+.++
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEE
Confidence 334555544444444444344333
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-06 Score=80.22 Aligned_cols=175 Identities=6% Similarity=-0.057 Sum_probs=123.8
Q ss_pred EEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCc--ceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 001535 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI--SVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1058)
Q Consensus 360 la~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~spdg~~las~~~dg~i~iwd~~~ 437 (1058)
+..++.|.++++.++..+.... .-|.. .+.++++|+|++++++.+....|..|.+..
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~---------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF---------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeccCCcceeEEEEecCcccc---------------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 4555788899998887544321 11322 388999999999999999999999999986
Q ss_pred CCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCC-CeeE----EeecccCCeeEEeecccCCceEE
Q 001535 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLF----NFEGHEAPVYSICPHHKENIQFI 511 (1058)
Q Consensus 438 ~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~-~~~~----~~~~h~~~v~~~~~~~~~~~~~l 511 (1058)
.............++.-.+..|+.... .+|++..||++.||| ..- .+.. +-..|.+.+..+.|++.+--.+|
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 544332223445566677889998887 799999999999999 433 3322 22458999999999876555677
Q ss_pred EEEeeCCeEEEEecCCCCceEEeeCCC--------CcEEEEEEccCCCEEEEEe
Q 001535 512 FSTAIDGKIKAWLYDTMGSRVDYDAPG--------HWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 512 ~s~~~dg~i~~wd~~~~~~~~~~~~~~--------~~i~~i~~s~~~~~l~~~~ 557 (1058)
+..-.-+.+.+.|+++......+.... ..|....|+.++..+.+..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 777778899999999876654433222 2366666666666555543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.8e-07 Score=91.59 Aligned_cols=260 Identities=15% Similarity=0.157 Sum_probs=174.2
Q ss_pred CcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecC
Q 001535 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1058)
|.+.|..+..+ ....+++++-||.++.|.-.. .+|......+. .|...|.+++.|.|
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKhFr--aHL~~I~sl~~S~d 64 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKHFR--AHLGVILSLAVSYD 64 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehhhhH--HHHHHHHhhhcccc
Confidence 66666666554 356789999999999995210 01211111122 27788899999999
Q ss_pred CCEEEEEe--CCcEEEEECCCceEEEEecCCC-CCeeEEEEecCCC-cEEE-EEECCCCEEEEEccCc--eeeeEecccC
Q 001535 843 DSYVMSAT--GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDN-NIIA-IGTEDSTIHIYNVRVD--EVKSKLKGHQ 915 (1058)
Q Consensus 843 g~~la~~~--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~-~~la-sg~~dg~v~iwd~~~~--~~~~~~~~h~ 915 (1058)
|.++++.+ |..++++|+++...+..++... ..--+...++.+. ..|| +.-.+|.+.|+|-... +....-.-|.
T Consensus 65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~ 144 (558)
T KOG0882|consen 65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF 144 (558)
T ss_pred ceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc
Confidence 99999965 6889999998776553333211 1122333344111 1333 3346789999997644 3334445699
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-Cceece-----EEEe---cCCCCCCCCceEEEEcCCCCEEEE-EECCe
Q 001535 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKS-----VTIH---IPAGKTPTGDTRVQFNADQVRMLV-VHETQ 985 (1058)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~-~~~~~~-----~~~~---~~~~~~~~~v~~l~~s~d~~~l~~-~~d~~ 985 (1058)
.+|..+.+++-+..++|....|.|.-|.... .+.... +... ...........++.|||+|..+.+ +.|..
T Consensus 145 sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk 224 (558)
T KOG0882|consen 145 SPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK 224 (558)
T ss_pred CceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE
Confidence 9999999999999999999999999999883 111110 0000 000111167789999999999998 68999
Q ss_pred EEEEECCCCeeeeeeccCCC------------------------------CCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001535 986 LAIYDASKMERIRQWTPQDA------------------------------LSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1058)
Q Consensus 986 v~v~d~~~~~~~~~~~~~~~------------------------------~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~ 1035 (1058)
|++++.++|..+..+..... ....-+.+.|...|.+|+-|+-=| |++.+
T Consensus 225 VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin 303 (558)
T KOG0882|consen 225 VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVIN 303 (558)
T ss_pred EEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEE
Confidence 99999999876554432210 133446788999999999988666 89999
Q ss_pred CCCCeEEEEEc
Q 001535 1036 ADTLRLRCYIA 1046 (1058)
Q Consensus 1036 ~~~~~~~~~~~ 1046 (1058)
+.+++....+.
T Consensus 304 ~~tn~v~ri~g 314 (558)
T KOG0882|consen 304 LDTNTVVRILG 314 (558)
T ss_pred eecCeEEEEec
Confidence 99998876653
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.4e-07 Score=86.69 Aligned_cols=254 Identities=15% Similarity=0.240 Sum_probs=161.1
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCcccc---ccceeecccccCccccccccc--CCCcceEEEEECCC
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---KPFKIWDMAACSLPFQASIFK--DVPISVSRVAWSPD 417 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spd 417 (1058)
..+.|++|.|.-.|. +||+|...|.|.+|.-.....-.. ..|+..+.. -..++ .-...|..+.|-.+
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-------FDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-------FDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccc-------hhhhhhccHHHHhhheeeecC
Confidence 456799999999999 699999899999997654321000 001111110 00111 12356888888775
Q ss_pred CC--EEEEEeCCCeEEEEEecCCC-------------------cc------e--------------eeee-ecccccCeE
Q 001535 418 GN--YVGVAFTKHLIQLYSYAGSN-------------------DL------R--------------QHSQ-IDAHVGAVN 455 (1058)
Q Consensus 418 g~--~las~~~dg~i~iwd~~~~~-------------------~~------~--------------~~~~-l~~h~~~v~ 455 (1058)
+. .++..+.|.+|++|.+.... .+ + .... -..|.-.|.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 43 45556789999999875430 00 0 0001 145777899
Q ss_pred EEEeecCCCeeEEEEEeCCCcEEEEe--c-CCC-eeEEeecc-----cCCeeEEeecccCCceEEEEEeeCCeEEEEecC
Q 001535 456 DLAFAYPNKLLCVVTCGDDKLIKVWE--L-SGR-KLFNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526 (1058)
Q Consensus 456 ~l~~s~d~~~~~l~s~~~d~~i~iwd--~-~~~-~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~ 526 (1058)
++.|+.|.. .++++ .|-.|-+|+ . ++. .+..++.| ..-|++..|+|... ..+.-.+..|.|++-|++
T Consensus 177 SiS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 177 SISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhh
Confidence 999999887 55554 588899999 2 222 23333444 34578888988654 567777888999999997
Q ss_pred CCC-----c-eE--Ee--------eCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC-ceeeeeecccC----
Q 001535 527 TMG-----S-RV--DY--------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRK---- 585 (1058)
Q Consensus 527 ~~~-----~-~~--~~--------~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~---- 585 (1058)
... . .. .+ ......|..+.|+++|+++++-. -.++.+||.+.. .++.++.-|..
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHH
Confidence 321 1 11 11 11223688899999999999864 678999999864 46666654422
Q ss_pred -------cce---eEEEEcCCCCEEEEEeCCCcEEEEE
Q 001535 586 -------KSN---GVVQFDTTQNHFLAVGEDSQIKFWD 613 (1058)
Q Consensus 586 -------~~i---~~~~~~~~~~~l~~~~~dg~i~vwd 613 (1058)
..| ..+.|+.+...+++|+.....-+|-
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 112 2367788888888888776665554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.9e-07 Score=85.96 Aligned_cols=208 Identities=14% Similarity=0.224 Sum_probs=125.3
Q ss_pred EEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeC
Q 001535 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1058)
Q Consensus 347 V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 426 (1058)
|+.+.|+-+- .|+++..++.+.......+.+.. .|+-+....++ ..+..|+++-.+-+.+--+..++++..
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCce--eeeeccCCCCCcccccccCCceEecCC
Confidence 7777777665 57888888887777665544432 23222222221 223345554444445556788999999
Q ss_pred CCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEe-----CCCcEEEEe-cC-CCeeEEeecccCCeeE
Q 001535 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LS-GRKLFNFEGHEAPVYS 499 (1058)
Q Consensus 427 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~-----~d~~i~iwd-~~-~~~~~~~~~h~~~v~~ 499 (1058)
||.+.+.+.+. .++....+..-...--+......+. .+.++. .-+..+.|+ .. +..+.... ....|.+
T Consensus 110 dg~~~v~s~~~--~~~~~~~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDK--DLALMSRIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTA 184 (319)
T ss_pred CceEEEEechH--HHhhhhhcccccccccccceeeccc--EEecCCcceEeeccceeeeccccccccccccc-ccccchh
Confidence 99999998876 2221111221111122223333444 333322 122344555 11 11122222 2234899
Q ss_pred EeecccCCceEEEEEeeCCeEEEEecCCCCceE-EeeCCCCcEEEEEEcc-CCCEEEEEeccCCCCceEEEEeCCC
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~i~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1058)
++-+|.+. +.+++|+.||.+-+||.+...... .+..|..++..+-|+| ++..|++++ ++|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s----edGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS----EDGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec----CCCcEEEEcCCC
Confidence 99888764 688999999999999998874433 4566788999999998 567888887 599999999654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00018 Score=69.08 Aligned_cols=135 Identities=10% Similarity=-0.007 Sum_probs=89.0
Q ss_pred eEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcce
Q 001535 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1058)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i 588 (1058)
.+++.|+..+.+..-|..++...++...... +.+-+.- -|++++.+.. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~R-iE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVR-IECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCce-eeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 4666777777777777776666554433322 2222221 4667888884 88899999999988887775543 22
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeC-CCCEEEEEECCCcE
Q 001535 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (1058)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 653 (1058)
......+++..+.+|+.|+..+..|..+...+.+.+..+.. ..+-+..| ++.+.+ +...|.+
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~-a~t~G~v 159 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYA-AITAGAV 159 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEE-EeccceE
Confidence 23456788999999999999999999999988887665542 23344455 444333 3333433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-05 Score=80.42 Aligned_cols=198 Identities=16% Similarity=0.132 Sum_probs=130.5
Q ss_pred EEEEec-CCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEe-cCCCcEEEEEECCCCEEEEEccCceeeeEec
Q 001535 836 CIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH-PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1058)
Q Consensus 836 ~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~ 912 (1058)
+++|.+ ++.++.+.. .+.|..|+..+++... +.... ...+++. + ++++++ +.. +.+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EET-TCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEc-CceEEEecCCCcEEEEee
Confidence 578887 565655554 7889999998876543 22222 6778888 5 666555 444 456666998886543332
Q ss_pred c-----cCCCeeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEE
Q 001535 913 G-----HQKRITGLAFSTSLNILVSSGAD--------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979 (1058)
Q Consensus 913 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 979 (1058)
. .....+.+++.++|++.++.... |.|..++.. ++...... .. .....++|+||++.|+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~------~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL------GFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE------SSEEEEEEETTSSEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cc------ccccceEECCcchhee
Confidence 2 34567899999999988876654 446667776 44332222 22 5568999999999888
Q ss_pred EE--ECCeEEEEECCCCee----eeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCc
Q 001535 980 VV--HETQLAIYDASKMER----IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1048 (1058)
Q Consensus 980 ~~--~d~~v~v~d~~~~~~----~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 1048 (1058)
++ ..+.|..|++..... ...+.......+....+++..+|++.++....+.|.+++.+ |+.+..+.-.
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 75 467788888863222 12221111112348899999999988888889999999987 9988887644
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-06 Score=83.70 Aligned_cols=248 Identities=12% Similarity=0.134 Sum_probs=148.2
Q ss_pred cccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEE
Q 001535 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1058)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 479 (1058)
++.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|... +++.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5888999999999999877 78889999999999999976655 35556 78999999999876 8999999999999
Q ss_pred Ee--cCCCeeEEeec--ccCCeeEEeeccc----CCceEEEEEeeCCeEEEEecCCCCce--EEee-CCCCcEEEEEEcc
Q 001535 480 WE--LSGRKLFNFEG--HEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGSR--VDYD-APGHWCTTMLYSA 548 (1058)
Q Consensus 480 wd--~~~~~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~~wd~~~~~~~--~~~~-~~~~~i~~i~~s~ 548 (1058)
|| .....+..+.+ ...+|..++..+. .-|.+++....+ +..|++.-.... .... ...+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33344444433 2344555443211 012233333322 445655332221 1122 2244566777777
Q ss_pred CCCEEEEEeccCCCCceEE----EEeCCCCceeeeee-cc---cCcc---eeEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001535 549 DGSRLFSCGTSKDGDSFLV----EWNESEGTIKRTYA-GF---RKKS---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1058)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~-~~---~~~~---i~~~~~~~~~~~l~~-~~~dg~i~vwd~~~ 616 (1058)
-.+.++...+....-..++ --|-.+|..+..-+ ++ .... -..+.-.++.++++. +++.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666666554321111111 11222333322111 11 0000 111222445566655 45668899999999
Q ss_pred CceeeEeccCCCCCCCceEEeeC-C-CCEEEEEECCCcEEEEEcc
Q 001535 617 VNILTSTDAEGGLPNLPRLRFSK-E-GNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iw~~~ 659 (1058)
++.++.+... .+|.++.... + +.+|++-+ |..++|+..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 2567666554 3 34565555 4577887654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-05 Score=82.37 Aligned_cols=194 Identities=16% Similarity=0.185 Sum_probs=122.0
Q ss_pred CCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEe-cccC---C
Q 001535 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGHQ---K 916 (1058)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~-~~h~---~ 916 (1058)
++..+.+++ ++.|..||..+|+.+.+............. .+..+++++.++.++.+|..+|+.+... .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 455555554 899999999999998888753222222222 2335566778889999999999988774 3221 1
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCC----CCceEEEEcCCCCEEEEEECCeEEEEECC
Q 001535 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP----TGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1058)
Q Consensus 917 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~v~~l~~s~d~~~l~~~~d~~v~v~d~~ 992 (1058)
.........++..++.+..++.|..+|+++|+.+-............ ..+..-....++..+++..++.+.-+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence 12223333347888888889999999999999766665532221100 11122223335544444556654444999
Q ss_pred CCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 001535 993 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1044 (1058)
Q Consensus 993 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~~~~ 1044 (1058)
+++.+ |.... ..+.. ....++..|++++.++.|..||+.+|+.+-+
T Consensus 192 tg~~~--w~~~~---~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 192 TGEKL--WSKPI---SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTEEE--EEECS---S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCEE--EEecC---CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 99865 32221 12222 1456788888888999999999999998643
|
... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.2e-07 Score=98.65 Aligned_cols=182 Identities=14% Similarity=0.177 Sum_probs=137.2
Q ss_pred CCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeE
Q 001535 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1058)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 920 (1058)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 344566665 788999999998887777655555666655 7899999999999999999999999999999999876
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCC--CCEEEEEECCeEEEE
Q 001535 921 LAFSTSLNILVSSGA---------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD--QVRMLVVHETQLAIY 989 (1058)
Q Consensus 921 l~~s~d~~~l~s~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--~~~l~~~~d~~v~v~ 989 (1058)
+.. .|+.|+++|. |..|+|||++.-+.+..+..+ ....-+.|.|. .++.+++..|...+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-------cCchhhhhcccccceEEEEecccceeec
Confidence 554 5899999985 566899999987766655544 22355677774 455555788999999
Q ss_pred ECCCCe-e-eeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001535 990 DASKME-R-IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 990 d~~~~~-~-~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
|..+.. + ......+. ....+..+.+|++|..++.|..+|.|.+|.-
T Consensus 294 d~~~lsNP~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccccCCCccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 844322 2 11111111 1455999999999999999999999999973
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.9e-07 Score=89.74 Aligned_cols=173 Identities=13% Similarity=0.188 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCC----c----CHHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhhHHHH
Q 001535 5 SRELVFLILQFLEEEKFKESVHKLEKESGFF----F----NMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (1058)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Es~~~----~----~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1058)
+.-+-|+|..||..+||.++|..|-++|.+. + ++..+++++++|+...|+.-.+.-...-... ...+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~-~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKE-ESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-cchhhhHH
Confidence 3456899999999999999999999999984 1 2778999999999999998876542221111 12377999
Q ss_pred HHhHHhHhhhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCCchHHHHHHHH--HHHhhcccC
Q 001535 77 RKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLI--ELKKLIEAN 154 (1058)
Q Consensus 77 ~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~~~~~ 154 (1058)
+.|.|+||++.+++.+|+.+.++.+.|......++++....++.++.......+.. .....|=..+. .++.+...
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky~~--l~~~~rw~~l~~lF~s~a~~l- 270 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKYLN--LLTADRWSVLADLFLSEALKL- 270 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccccC--cccHHHHHHHHHHhhHHHHHH-
Confidence 99999999999999999999999999998888889999999998865443322211 12233422222 22222221
Q ss_pred cccccccCCCCCC-chHHHHHHHHHHHHHHh-cCCCCC
Q 001535 155 PLFRDKLAFPTLK-SSRLRTLINQSLNWQHQ-LCKNPR 190 (1058)
Q Consensus 155 ~~~~~~~~~~~~p-~~rL~~ll~qa~~~q~~-~c~~~~ 190 (1058)
+ .+| ..+|..+|.-.+..|.- .|.+..
T Consensus 271 --------~-~i~~~~~L~~~l~~GLsalKTp~c~~~~ 299 (389)
T KOG0396|consen 271 --------F-GIPINPALTIYLQAGLSALKTPRCLNDE 299 (389)
T ss_pred --------h-CCCCCcHHHHHHHhhhhhcccccccccc
Confidence 1 122 22688888888877733 466554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.3e-05 Score=88.88 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=80.0
Q ss_pred eeEEEEecCCCEEEEEe-----C-CcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEE---CCCCEEEEEccC
Q 001535 834 VPCIALSKNDSYVMSAT-----G-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRV 904 (1058)
Q Consensus 834 v~~~~~s~dg~~la~~~-----d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~---~dg~v~iwd~~~ 904 (1058)
=+.+.|--||+++|+.. + .+|+|||.+ |.+-..-....+.-.+++|-| .|.++|+-. .|+.|.++....
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCC
Confidence 35688999999999853 4 569999987 443322222334456899999 888888654 455799998442
Q ss_pred ---ceeeeEecccCCCeeEEEEcCCCCEEEE---EeCCCcEEEEECCCCcee
Q 001535 905 ---DEVKSKLKGHQKRITGLAFSTSLNILVS---SGADAQLCVWSIDTWEKR 950 (1058)
Q Consensus 905 ---~~~~~~~~~h~~~V~~l~~s~d~~~l~s---~s~Dg~i~iwd~~~~~~~ 950 (1058)
|+....+.....+|..++|+.++..|+. ......|++|-+.+...-
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence 2333334444456999999999999997 444555999999885543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-05 Score=87.68 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=92.9
Q ss_pred EecCCCEEEEEeCCcEEEEECCC-----ceEEEEecCCCCCeeEEEEecCCCcEEEEEE-CCCCEEEEEccCce------
Q 001535 839 LSKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDE------ 906 (1058)
Q Consensus 839 ~s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~v~iwd~~~~~------ 906 (1058)
+.+||++... .+++|.+.|..+ .+.+..+. -......+.+|| ||+++++++ .+.+|.|.|+.+.+
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457876665 467899999988 34555554 455678899999 777766555 58899999998754
Q ss_pred ------eeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC----------CceeceEEEecCCCCCCCCceEEE
Q 001535 907 ------VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT----------WEKRKSVTIHIPAGKTPTGDTRVQ 970 (1058)
Q Consensus 907 ------~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~v~~l~ 970 (1058)
...+..--.++. ..+|.++|....|...|..|..||+.+ ...+..+..+-..+|. .....=.
T Consensus 361 ~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~-~~~~g~t 438 (635)
T PRK02888 361 IKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN-HASMGET 438 (635)
T ss_pred CCccceEEEeeccCCCcc-eEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee-eecCCCc
Confidence 234444333443 678999999999999999999999987 2333334444333332 1111122
Q ss_pred EcCCCCEEEEE
Q 001535 971 FNADQVRMLVV 981 (1058)
Q Consensus 971 ~s~d~~~l~~~ 981 (1058)
-.|||+||++.
T Consensus 439 ~~~dgk~l~~~ 449 (635)
T PRK02888 439 KEADGKWLVSL 449 (635)
T ss_pred CCCCCCEEEEc
Confidence 37899999884
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-07 Score=104.85 Aligned_cols=255 Identities=15% Similarity=0.153 Sum_probs=168.0
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
|...-+|++||-+.+ .|++|+..|.|+++++.+|..... ...|..+|+-+.-|.||..++
T Consensus 1100 ~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcceee
Confidence 788999999999988 589999999999999999987654 667999999999999999888
Q ss_pred EEeCCC--eEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEe-ec---ccC
Q 001535 423 VAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EG---HEA 495 (1058)
Q Consensus 423 s~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~-~~---h~~ 495 (1058)
+.+.-. ...+|++.+- ....+++. .-.++.|+..... -+.|.....+.+|| .++.++.++ .+ ..-
T Consensus 1160 tsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred eeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 765443 4689998752 22222332 3567889876552 34444456788999 888877663 22 111
Q ss_pred CeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc
Q 001535 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1058)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1058)
.-+...|+|. ..+++ .|| .+||.+.......+..... -..-.|+|.|..++..+ .+||+++.+
T Consensus 1232 ~~n~a~FsP~--D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS---------EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1232 SNNLAHFSPC--DTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS---------EIWDMRTFK 1294 (1516)
T ss_pred hccccccCCC--cceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec---------hhhhhHHHH
Confidence 2245566553 34443 355 4699988766554443321 12235899999998865 579999999
Q ss_pred eeeeeecccCcceeEEEEcCCCCEEEEEe--CC---------------CcEEEEECCCCceeeEeccCCCCCCCceEEee
Q 001535 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG--ED---------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1058)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1058)
+++..+.-.+ +.+.|+..|+.++..- .| ...+-++..+...+.++.... .+..++-+
T Consensus 1295 lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R---~~~Dlct~ 1368 (1516)
T KOG1832|consen 1295 LLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR---CLLDLCTE 1368 (1516)
T ss_pred HHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---chhhhhcC
Confidence 9888776543 3467888777655432 00 123344444455555554432 35566666
Q ss_pred CCCCEEEEEE
Q 001535 639 KEGNLLAVTT 648 (1058)
Q Consensus 639 ~~~~~l~~~~ 648 (1058)
|...++++..
T Consensus 1369 ~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1369 PTDSFLGVIE 1378 (1516)
T ss_pred CccceEEEEe
Confidence 6655655543
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=85.80 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=99.1
Q ss_pred HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHhHHhHhhhcCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001535 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (1058)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1058)
...++++|++|+++.|++.++.....-....+ .+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.+.++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56789999999999999999887432222222 38999999999999999999999999999998774445677888888
Q ss_pred hhccccccc--hhhhcccCCchHHHHHHHHHHHhhcccCcccccccCCCCCC-chHHHHHHHHHHHHH
Q 001535 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (1058)
Q Consensus 118 ~l~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1058)
+|....... ...+...- ...+|+++++.+.+.+-...- +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 888776554 22222222 237789999999887655332 44 457888888877654
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-05 Score=81.17 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=138.5
Q ss_pred CCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeeccc
Q 001535 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (1058)
Q Consensus 427 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~ 505 (1058)
+|+|..||..+|+.+-... +..-.....+. ..+++. .+++++.++.+..|| .+|+.+.++.. ..++.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~--- 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV--- 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE---
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee---
Confidence 6889999998887665432 21111222222 333455 577778899999999 79998877764 222211111
Q ss_pred CCceEEEEEeeCCeEEEEecCCCCceEEe-eCCC---CcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeee
Q 001535 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1058)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~---~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1058)
.++..++.++.++.+..+|..+++..... .... ..........++..++++.. ++.|..+|..+|+.+..+.
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 12346777778889999999999988874 3221 11222333334777777763 8899999999999988887
Q ss_pred cccCcc---------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCc
Q 001535 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1058)
Q Consensus 582 ~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 652 (1058)
...... +..-....++ .++.++.++.+..+|..+++.+.... .. .+.. ....++..+++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 644211 1111222234 88888888864444999999665333 11 1222 14567788888889999
Q ss_pred EEEEEccCCcc
Q 001535 653 FKILANAIGLR 663 (1058)
Q Consensus 653 i~iw~~~~~~~ 663 (1058)
+..||+.++..
T Consensus 224 l~~~d~~tG~~ 234 (238)
T PF13360_consen 224 LYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCCE
Confidence 99999999843
|
... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-07 Score=90.63 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=119.6
Q ss_pred EeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 001535 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1058)
Q Consensus 351 ~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i 430 (1058)
+||-+-.-+-++.+.+..|-|-|+.+|.... +. ..+.|.++.|...+.++..|+.+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 6664322122333457788899999886532 22 56789999999999999999999999
Q ss_pred EEEEecCCCc--ceeeeeecccccCeEEEEeec-CCCeeEEEEEeCCCcEEEEe-cCCCe---eEEeecccCCeeEEeec
Q 001535 431 QLYSYAGSND--LRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSICPH 503 (1058)
Q Consensus 431 ~iwd~~~~~~--~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd-~~~~~---~~~~~~h~~~v~~~~~~ 503 (1058)
.++|+..+.. .-....+ -|...|+++.... +++ +|.+.+.+|.|++|| .--++ +..+.||-..-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 9999986511 0011122 5899999998877 555 788899999999999 55555 88899997665555555
Q ss_pred ccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC
Q 001535 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (1058)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 537 (1058)
-.+....+++++.|...|+|.++.+....++...
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 5666678999999999999999887776655443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-06 Score=79.08 Aligned_cols=74 Identities=27% Similarity=0.450 Sum_probs=64.1
Q ss_pred CCeeEEEEecCCCcEEEEEECCCCEEEEEccCcee-eeEecccCCCeeEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 001535 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKRITGLAFSTS-LNILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d-~~~l~s~s~Dg~i~iwd~~~ 946 (1058)
..|++++-+|....++++|++||.+-+||.+.... ...+..|+.+|+.+-|+|. +..|++++.||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 34889999997778899999999999999988743 3456889999999999984 67899999999999999886
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.2e-05 Score=76.51 Aligned_cols=211 Identities=17% Similarity=0.219 Sum_probs=136.4
Q ss_pred eeEEEEecCCCEEEEEe---CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEcc-Cceeee
Q 001535 834 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKS 909 (1058)
Q Consensus 834 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~-~~~~~~ 909 (1058)
...+++|.||+++.+.. .-.|.|.|+...+.+.++.... |.-.-|..++-+.+-|.||.+.-..+. .|+...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 34578999999998886 4679999999999998886432 222223234557788889999998887 454432
Q ss_pred E----ecccCCCe-eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCC------CCCCCCceEEEEcCCCCEE
Q 001535 910 K----LKGHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRM 978 (1058)
Q Consensus 910 ~----~~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~l~~s~d~~~l 978 (1058)
+ +..-..++ ..-+++.++..++..+.+|.|+--|+............... +=.+++-.-+++++....|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 2 11122222 23345556666666888999999888876543333333211 1122666779998876655
Q ss_pred EEE----ECC-------eEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCeEEEEE
Q 001535 979 LVV----HET-------QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYI 1045 (1058)
Q Consensus 979 ~~~----~d~-------~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~t~~-~dg~i~iw~~~~~~~~~~~ 1045 (1058)
.+- .++ .|-+||+.+++.+..+.. ..++.+|+.|.|.+ +|++.+ .++.+.+||..+|+++..+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 552 222 388889999999999876 34688999999988 555544 5799999999999999999
Q ss_pred cCccccC
Q 001535 1046 APSTYLS 1052 (1058)
Q Consensus 1046 ~~~~~~~ 1052 (1058)
...+..|
T Consensus 329 ~~lG~~~ 335 (342)
T PF06433_consen 329 EQLGETP 335 (342)
T ss_dssp ---SSS-
T ss_pred hccCCCc
Confidence 8766554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-07 Score=62.76 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=37.1
Q ss_pred ceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001535 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1058)
Q Consensus 905 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd 943 (1058)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0006 Score=65.55 Aligned_cols=143 Identities=9% Similarity=0.083 Sum_probs=91.8
Q ss_pred ecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 001535 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQL 432 (1058)
Q Consensus 353 sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~i 432 (1058)
-+|.+.+++.||..+.+.--|..+|+.... . ++ ...|.+-+.- -|++++.|+..|.+++
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We-------~----------il---g~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A----------IL---GVRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEee-------h----------hh---CceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 455566899999999999999999987642 1 01 1233332221 5788999999999999
Q ss_pred EEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEE
Q 001535 433 YSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI 511 (1058)
Q Consensus 433 wd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 511 (1058)
.+.++|+....+..+..- =......+++. ++..|+.|++.+.-| .+..++...+-..+...+-++.+- ++ .|
T Consensus 78 l~~~tGs~~w~f~~~~~v---k~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~-sl 150 (354)
T KOG4649|consen 78 LCVKTGSQIWNFVILETV---KVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG-SL 150 (354)
T ss_pred EEecchhheeeeeehhhh---ccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc-eE
Confidence 999999776644332211 11233456777 899999999999999 888888776533332222233221 32 34
Q ss_pred EEEeeCCeEEEE
Q 001535 512 FSTAIDGKIKAW 523 (1058)
Q Consensus 512 ~s~~~dg~i~~w 523 (1058)
+.+...|.+.--
T Consensus 151 y~a~t~G~vlav 162 (354)
T KOG4649|consen 151 YAAITAGAVLAV 162 (354)
T ss_pred EEEeccceEEEE
Confidence 455555555433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.9e-05 Score=87.85 Aligned_cols=278 Identities=13% Similarity=0.166 Sum_probs=159.6
Q ss_pred CCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEE
Q 001535 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1058)
Q Consensus 344 ~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1058)
.+.|.++.|.-++.. ++.+..+|.|.+-|..+..... ...-.+.|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 468999999999884 6777889999998887654322 3334679999999999999999
Q ss_pred EeCCCeEEEEEecCCCcceeeeeecc---cccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCe-eEEeecccCCee
Q 001535 424 AFTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK-LFNFEGHEAPVY 498 (1058)
Q Consensus 424 ~~~dg~i~iwd~~~~~~~~~~~~l~~---h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~-~~~~~~h~~~v~ 498 (1058)
.+..+++.+-+. +-..+... .+.. ..+..-.+-|-...++ +.|+ .|...--+ ..... +.... -.+.=+
T Consensus 127 iT~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~-~~~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIE-QDDHKT 199 (1265)
T ss_pred EeCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchh-hccCCc
Confidence 988887766432 21211110 0100 1111222333322221 1111 11111111 00000 00001 112224
Q ss_pred EEeecccCCceEEEEEe-----eCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC
Q 001535 499 SICPHHKENIQFIFSTA-----IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~-----~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1058)
+++| .+||+++++.. ..+.|++||-+ +.....-....+.-.+++|-|.|..+++..... .++.|.++..+.
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~-sd~~IvffErNG 275 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT-SDSDIVFFERNG 275 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC-CCCcEEEEecCC
Confidence 5666 56888888843 23789999865 332222233334456899999999999887544 355788887432
Q ss_pred ---CceeeeeecccCcceeEEEEcCCCCEEEE---EeCCCcEEEEECCCCceee--EeccCCCCCCCceEEeeCCC-CEE
Q 001535 574 ---GTIKRTYAGFRKKSNGVVQFDTTQNHFLA---VGEDSQIKFWDMDNVNILT--STDAEGGLPNLPRLRFSKEG-NLL 644 (1058)
Q Consensus 574 ---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~-~~l 644 (1058)
|...-.++.... .+..++|+.++..|++ ......|++|...+....- .+..... .-+.|+|.. ..+
T Consensus 276 L~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL 350 (1265)
T ss_pred ccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence 222222222222 3788999999998888 4455669999988765432 3333222 238899843 334
Q ss_pred EEEECCCcEEEEEc
Q 001535 645 AVTTADNGFKILAN 658 (1058)
Q Consensus 645 ~~~~~dg~i~iw~~ 658 (1058)
.+-..+|...+++.
T Consensus 351 ~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDF 364 (1265)
T ss_pred EEEecCCcEEEEEE
Confidence 44446676666654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00034 Score=72.12 Aligned_cols=272 Identities=14% Similarity=0.205 Sum_probs=147.4
Q ss_pred ceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeeEeccCCC-C---
Q 001535 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWDMDNVNILTSTDAEGG-L--- 629 (1058)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~-~--- 629 (1058)
++++++|.++++.+..+.... ...+..+|+++.+++++ ..-.|.+||..+-.....+..+.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 478999999999888777533 33467899999998754 234699999999888877665542 1
Q ss_pred -CCCceEEeeCCCCEEEEEEC--CCcEEEEEccCCccccccccCCCcccccCcccceeeeeccccccccCCCCcceeecc
Q 001535 630 -PNLPRLRFSKEGNLLAVTTA--DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1058)
Q Consensus 630 -~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1058)
......+++.||+++.+... ...|.+.|+..+. ..
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv----------------------------------------- 131 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-VV----------------------------------------- 131 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EE-----------------------------------------
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCc-ee-----------------------------------------
Confidence 12234566666665544322 2234444443321 11
Q ss_pred CCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccC
Q 001535 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1058)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 786 (1058)
..+..|+ ..+.|--..+.+.+.+.||
T Consensus 132 ----------------------------------------------~ei~~PG--------C~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 132 ----------------------------------------------GEIDTPG--------CWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp ----------------------------------------------EEEEGTS--------EEEEEEEETTEEEEEETTS
T ss_pred ----------------------------------------------eeecCCC--------EEEEEecCCCceEEEecCC
Confidence 1111121 1111111123466777777
Q ss_pred eeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCC-EEEEEeCCcEEEEECCCceE-
Q 001535 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMSATGGKISLFNMMTFKV- 864 (1058)
Q Consensus 787 ~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~dg~i~vwd~~~~~~- 864 (1058)
.+.-..++. .|+.... .-.+++... ...+..-+++.++. ++.....|.|+-.|+.....
T Consensus 158 sl~~v~Ld~-----~Gk~~~~-~t~~F~~~~-------------dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~ 218 (342)
T PF06433_consen 158 SLLTVTLDA-----DGKEAQK-STKVFDPDD-------------DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK 218 (342)
T ss_dssp CEEEEEETS-----TSSEEEE-EEEESSTTT-------------S-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE
T ss_pred ceEEEEECC-----CCCEeEe-eccccCCCC-------------cccccccceECCCCeEEEEecCCEEEEEeccCCccc
Confidence 776665542 2222211 112233221 11222344554444 33344478777777765432
Q ss_pred -EEEecCC----------CCCeeEEEEecCCCcEEEEEE--CCC-------CEEEEEccCceeeeEecccCCCeeEEEEc
Q 001535 865 -MTTFMSP----------PPASTFLAFHPQDNNIIAIGT--EDS-------TIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (1058)
Q Consensus 865 -~~~~~~~----------~~~i~~l~~s~~~~~~lasg~--~dg-------~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 924 (1058)
......- .+.-.-+++++..+++.+.-- .+| .|.++|+.+++.+.++.. ..++.+++.+
T Consensus 219 ~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vs 297 (342)
T PF06433_consen 219 FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVS 297 (342)
T ss_dssp EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEE
T ss_pred ccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEc
Confidence 1122110 123455788873444433221 111 588889999999998874 2468899999
Q ss_pred CCCC-EEEEE-eCCCcEEEEECCCCceeceEE
Q 001535 925 TSLN-ILVSS-GADAQLCVWSIDTWEKRKSVT 954 (1058)
Q Consensus 925 ~d~~-~l~s~-s~Dg~i~iwd~~~~~~~~~~~ 954 (1058)
.|.+ +|++. ..++.+.+||..+|+.+....
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 9876 66554 457899999999998776654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00021 Score=78.40 Aligned_cols=296 Identities=16% Similarity=0.180 Sum_probs=152.4
Q ss_pred ecCCCeEEEEE--------eccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEE
Q 001535 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1058)
Q Consensus 353 sp~g~~lla~g--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1058)
||||+++|+.- +..+.+.|+|+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999655522 335688999998876532 11125678889999999999988
Q ss_pred eCCCeEEEEEecCCCcceeeeeecc-------c---------ccCeEEEEeecCCCeeEEEEE-eCCCcEEEEecCCCee
Q 001535 425 FTKHLIQLYSYAGSNDLRQHSQIDA-------H---------VGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKL 487 (1058)
Q Consensus 425 ~~dg~i~iwd~~~~~~~~~~~~l~~-------h---------~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~ 487 (1058)
. ++.|.+++..++...+. +..| - -+.-..+-|||||++ |+.. -++..|+.+. +
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~-----~ 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP-----L 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE-----E
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE-----e
Confidence 5 56799999877743321 1222 0 122356889999995 4433 2334444333 0
Q ss_pred EEeeccc---CCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceE-Ee----eCCCCcEEEEEEccCCCEEEEEecc
Q 001535 488 FNFEGHE---APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DY----DAPGHWCTTMLYSADGSRLFSCGTS 559 (1058)
Q Consensus 488 ~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~----~~~~~~i~~i~~s~~~~~l~~~~~~ 559 (1058)
....... ..+..+.+-..++.+ . .-.+.++|+.+++... .. ......+..+.|.++++.++..-.+
T Consensus 131 ~~~~~~~~~yp~~~~~~YPk~G~~n--p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRYPKAGDPN--P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp EEESSSTESS-EEEEEE--BTTS---------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCccccCCcccccccCCCCCcC--C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 0000011 123333331111111 0 1135567776665432 21 2345578999999999944444333
Q ss_pred CC-CCceEEEEeCCCCceeeeeecccCcc---eeEEEEc-CCCCEEEE-EeCCC--cEEEEECCCCceeeEeccCCCCCC
Q 001535 560 KD-GDSFLVEWNESEGTIKRTYAGFRKKS---NGVVQFD-TTQNHFLA-VGEDS--QIKFWDMDNVNILTSTDAEGGLPN 631 (1058)
Q Consensus 560 ~~-~~~~i~~wd~~~~~~~~~~~~~~~~~---i~~~~~~-~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~ 631 (1058)
++ +...+.+.|..++.....+......- .....+. +++..++. ...+| .|++++...+... .+.. + .-.
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~-G-~~~ 281 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTS-G-DWE 281 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS--S-SS-
T ss_pred cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cccc-C-cee
Confidence 32 34467778888776554443332222 2234554 66655544 44565 4666676666643 3321 2 224
Q ss_pred C-ceEEeeCCCCEEEE-EECC--C--cEEEEEcc-CCccccccccCCCcccccCcc-cceeeeecccccccc
Q 001535 632 L-PRLRFSKEGNLLAV-TTAD--N--GFKILANA-IGLRSLRAVENPPFEALRTPI-ESVALKVSASSAVSS 695 (1058)
Q Consensus 632 v-~~v~~s~~~~~l~~-~~~d--g--~i~iw~~~-~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~g~~l~~~ 695 (1058)
| .-+.++++++.+.. +..+ + .+..-++. .+ ..+.+.... .. ..+.|||+|++++..
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~------~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCED------GDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTTS------STTEEEEE-TTSSEEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCCC------CCceEEEECCCCCEEEEE
Confidence 5 34678887776654 4432 2 34444544 22 222222111 12 368999999988544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-05 Score=86.13 Aligned_cols=182 Identities=9% Similarity=0.026 Sum_probs=120.2
Q ss_pred EEecCCCEEEEEe--CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECC---C-CEEEEEccCceeeeEe
Q 001535 838 ALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---S-TIHIYNVRVDEVKSKL 911 (1058)
Q Consensus 838 ~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g-~v~iwd~~~~~~~~~~ 911 (1058)
=+++||+.+...+ .+.+.+.|.++.+....+.-.. ....+++++ +++++++.+.+ | ++..-+..+...+..+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 3457887765444 5778899999888877766433 456789999 88888777632 2 2333332221111111
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-----CceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE--ECC
Q 001535 912 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-----WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HET 984 (1058)
Q Consensus 912 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~--~d~ 984 (1058)
.- ..+ -++.++|++... .++.|.+.|..+ .+....+... .....+.+||||++++++ .+.
T Consensus 277 ni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-------KsPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 277 NI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-------KNPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred ch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-------CCccceEECCCCCEEEEeCCCCC
Confidence 10 000 133567887665 367899999988 3333333322 455789999999999996 478
Q ss_pred eEEEEECCCCee------------eeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001535 985 QLAIYDASKMER------------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 985 ~v~v~d~~~~~~------------~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
.+.|+|+.+.+. +..... ...-...+|.++|....|-..|..|..|++.+
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 899999988653 333332 34556788999999888888999999999976
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=84.69 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=115.3
Q ss_pred EEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeceEEEecCCCCCC
Q 001535 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW-----EKRKSVTIHIPAGKTP 963 (1058)
Q Consensus 889 asg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~ 963 (1058)
++.+.+..|-+-++.+|-. +.|. .++.|.++.|...++++..|...|.|...|+..+ .+...+.. +
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh-------~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH-------D 298 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc-------C
Confidence 4455577888889888742 3343 6678999999998999999999999999999875 22222222 2
Q ss_pred CCceEEEEcC-CCCEEEEE-ECCeEEEEECCCCee---eeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001535 964 TGDTRVQFNA-DQVRMLVV-HETQLAIYDASKMER---IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 964 ~~v~~l~~s~-d~~~l~~~-~d~~v~v~d~~~~~~---~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
+.|+++..-. ++.+|.++ -+|+|.+||.+--++ +.++.+|-. ...-.-+-..+....++++++|...+||.+..
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN-~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN-LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc-cccccccccccccceEEEccCeeEEEEEeccc
Confidence 7788888776 67777664 799999999987776 777766643 22333344567777899999999999999999
Q ss_pred CeEEEEEcCccccC
Q 001535 1039 LRLRCYIAPSTYLS 1052 (1058)
Q Consensus 1039 ~~~~~~~~~~~~~~ 1052 (1058)
|.+++.+....--|
T Consensus 378 ghLl~tipf~~s~~ 391 (425)
T KOG2695|consen 378 GHLLCTIPFPYSAS 391 (425)
T ss_pred CceeeccCCCCccc
Confidence 99999987654433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00011 Score=82.48 Aligned_cols=207 Identities=12% Similarity=0.150 Sum_probs=133.7
Q ss_pred cEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcc-eEEEEECCCCCEEEEE
Q 001535 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVA 424 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~las~ 424 (1058)
.|+| |++.+. .+|.|+.+|.|.+.+-. -+.+.. +..+... |..+-.-.+..+|++.
T Consensus 27 ~isc--~~s~~~-~vvigt~~G~V~~Ln~s-~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv 83 (933)
T KOG2114|consen 27 AISC--CSSSTG-SVVIGTADGRVVILNSS-FQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSV 83 (933)
T ss_pred ceeE--EcCCCc-eEEEeeccccEEEeccc-ceeeeh-------------------heecchhhhhHhhcccCceEEEEE
Confidence 4444 467776 68999999988877632 111111 3445444 3333333344677777
Q ss_pred eCCC-----eEEEEEecCCCc---ceee--eeecc-----cccCeEEEEeecCCCeeEEEEEeCCCcEEEEe---c--CC
Q 001535 425 FTKH-----LIQLYSYAGSND---LRQH--SQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---L--SG 484 (1058)
Q Consensus 425 ~~dg-----~i~iwd~~~~~~---~~~~--~~l~~-----h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd---~--~~ 484 (1058)
+.|+ .++|||++.-+. .... +.+.+ ...++.+++.+.+-+ .+|.|-.+|.|..+. . .|
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccc
Confidence 6654 489999864311 1111 11222 356789999999977 799999999999886 1 22
Q ss_pred CeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCc-eEEeeCCCCcEEEEEEccCCCEEEEEeccCCCC
Q 001535 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1058)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~ 563 (1058)
....-......+|+++++.. ++..++....-..|.+|.+..... ...+..++....|.++++....+++++ .
T Consensus 162 sr~~~~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~ 234 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----S 234 (933)
T ss_pred cceeeeccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----C
Confidence 22222233467899999965 445544555567899999885553 334777888999999988777566664 6
Q ss_pred ceEEEEeCCCCceeeeee-ccc
Q 001535 564 SFLVEWNESEGTIKRTYA-GFR 584 (1058)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~-~~~ 584 (1058)
..+.+|+.........+. ++.
T Consensus 235 e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 235 EFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred ceEEEEcCCCcceeeeecCCCe
Confidence 789999988777766776 544
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00053 Score=75.23 Aligned_cols=306 Identities=14% Similarity=0.063 Sum_probs=153.1
Q ss_pred ccCCCEEEEEecc-----CCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 001535 547 SADGSRLFSCGTS-----KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1058)
Q Consensus 547 s~~~~~l~~~~~~-----~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 621 (1058)
|||+++++..... .+..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 5788877764321 01245789999999876655544 23577899999999998886 4689999988774433
Q ss_pred EeccCCC----------------CCCCceEEeeCCCCEEEEEECC-CcEEEEEccCCccccccccCCCcccccCccccee
Q 001535 622 STDAEGG----------------LPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1058)
Q Consensus 622 ~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 684 (1058)
.. ..+. ...-..+-|||||++|+....| ..|..+.+..-..... .++ .+..+.
T Consensus 78 lT-~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp------~~~~~~ 147 (353)
T PF00930_consen 78 LT-TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYP------EVESIR 147 (353)
T ss_dssp SE-S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-------EEEEEE
T ss_pred ec-cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCC------cccccc
Confidence 22 2220 1223678899999999887654 4444443321100000 000 000011
Q ss_pred eeeccccccccCCCCcceeeccCCCCCCccccCCCCCCCCCCCCcccCCCCCCC--CcceeeeeecCCceEEEEec-CCC
Q 001535 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP--KPWQLAEIVDSGQCRLVTMP-EST 761 (1058)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i--~vw~~~~~~~~~~~~~~~~~-~~~ 761 (1058)
+- ..|+.+-.+ .++++. .+....+..+ ...
T Consensus 148 YP-------------------------------------------k~G~~np~v~l~v~~~~----~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 148 YP-------------------------------------------KAGDPNPRVSLFVVDLA----SGKTTELDPPNSLN 180 (353)
T ss_dssp ---------------------------------------------BTTS---EEEEEEEESS----STCCCEE---HHHH
T ss_pred cC-------------------------------------------CCCCcCCceEEEEEECC----CCcEEEeeeccccC
Confidence 00 011111111 222222 1111122211 001
Q ss_pred CCcccEEEEEEecCcceEEEeecc---CeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccC-CCCCCCeeEE
Q 001535 762 DTSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG-VNLEEAVPCI 837 (1058)
Q Consensus 762 ~~~~~i~~l~~s~~~~~l~~~~~d---g~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~ 837 (1058)
.....+..+.|.+++..++..-.+ ..+.+..+ |..++......... ..--......
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~--------------------d~~tg~~~~~~~e~~~~Wv~~~~~~ 240 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC--------------------DASTGETRVVLEETSDGWVDVYDPP 240 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE--------------------EECTTTCEEEEEEESSSSSSSSSEE
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEE--------------------ECCCCceeEEEEecCCcceeeeccc
Confidence 145678899999999844444332 33333322 23332211111000 0011222355
Q ss_pred EEe-cCCCEEEEEe--CCc--EEEEECCCceEEEEecCCCCCeeE-EEEecCCCcEEEEEECCC----CEEEEEccCcee
Q 001535 838 ALS-KNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTF-LAFHPQDNNIIAIGTEDS----TIHIYNVRVDEV 907 (1058)
Q Consensus 838 ~~s-~dg~~la~~~--dg~--i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~lasg~~dg----~v~iwd~~~~~~ 907 (1058)
.+. +++..++..+ +|- |.+++...+.. ..+....-.|.. +.+++.++.+..++..++ .++.-++..+..
T Consensus 241 ~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 241 HFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp EE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred ccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 554 7776665554 554 77888877664 355545556644 778884455556666533 455556562334
Q ss_pred eeEecccCCCeeEEEEcCCCCEEEEE
Q 001535 908 KSKLKGHQKRITGLAFSTSLNILVSS 933 (1058)
Q Consensus 908 ~~~~~~h~~~V~~l~~s~d~~~l~s~ 933 (1058)
+..+....+.-..+.|||||++++-.
T Consensus 320 ~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 320 PKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred eEeccCCCCCceEEEECCCCCEEEEE
Confidence 45565444433689999999988743
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00013 Score=80.20 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=100.6
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
|...|.--+++..++ +++.|++.|.+.+|+-..++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 455666667777888 589999999999999877765431 1333556777788999999999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeee---cccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCC-----eeEEeeccc
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l---~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~h~ 494 (1058)
.|+..|.|.|+.+..+........- ..|...|++++|++++. .+++|...|.|..-..+.. ..+.+..-.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9999999999988775433322211 23778999999999999 7999999999887763321 123333445
Q ss_pred CCeeEEee
Q 001535 495 APVYSICP 502 (1058)
Q Consensus 495 ~~v~~~~~ 502 (1058)
+.|..+..
T Consensus 171 s~IVQlD~ 178 (726)
T KOG3621|consen 171 SEIVQLDY 178 (726)
T ss_pred cceEEeec
Confidence 66666654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-06 Score=58.74 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=36.9
Q ss_pred ceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEE
Q 001535 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1058)
Q Consensus 862 ~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd 901 (1058)
++++.++.+|...|++++|+| ++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6e-05 Score=83.87 Aligned_cols=185 Identities=12% Similarity=0.120 Sum_probs=126.4
Q ss_pred cEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCE
Q 001535 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1058)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1058)
.+.+.+++ ++.++.|..+|.+++++.... . ...+. |... ..+|++
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~-~~~~~---~s~~------~~~Gey 85 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------P-KTNFD---HSSS------ILEGEY 85 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc-----------------------c-ccccc---cccc------ccCCce
Confidence 34444444 566888888999999874321 0 00000 1111 568999
Q ss_pred EEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCC-----CcEEEEEECCCCEEEEEccC--ceeeeEecccCCC
Q 001535 846 VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD-----NNIIAIGTEDSTIHIYNVRV--DEVKSKLKGHQKR 917 (1058)
Q Consensus 846 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-----~~~lasg~~dg~v~iwd~~~--~~~~~~~~~h~~~ 917 (1058)
+++|+ ||+|.|-.+-+.+....+. -..++.+++++| + .+.+++|+.-| +.++.-.= .+.-..+..-.|+
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 99999 8999999988887766665 346789999999 5 56788899888 77776431 1212245566789
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECC
Q 001535 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1058)
Q Consensus 918 V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~ 992 (1058)
|.++.|. |+++|-++.+| |+|||+.+++.+..+...........-...+.|.++.++++. =..+|+|..++
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCeEEEEEEe
Confidence 9999998 78999988888 999999998876665544433333244567888887776554 33456766666
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=9e-05 Score=83.08 Aligned_cols=196 Identities=17% Similarity=0.239 Sum_probs=131.7
Q ss_pred EEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCC-eeEEEEecCCCcEEEEEECCCC-----EEEEEccCc----
Q 001535 837 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTEDST-----IHIYNVRVD---- 905 (1058)
Q Consensus 837 ~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~lasg~~dg~-----v~iwd~~~~---- 905 (1058)
-++++.+..+|.|+ +|.|.+++- +.+.++.+..+... |+.+-... +..+|++.++|+. ++||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888999998 899988874 34555777777666 44444433 4468888877764 899998743
Q ss_pred --eee--eEecc-----cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCC
Q 001535 906 --EVK--SKLKG-----HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1058)
Q Consensus 906 --~~~--~~~~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 976 (1058)
.++ ..+.. ...++.+++.|.+-+.+|.|-.||.|..+.-+--........-...+. .+|+.++|-.|++
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~--~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK--EPITGLALRSDGK 184 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC--CCceeeEEecCCc
Confidence 233 12222 245788999999999999999999999986443221111111111121 8899999999998
Q ss_pred E-EEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001535 977 R-MLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1058)
Q Consensus 977 ~-l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~ 1039 (1058)
. +.++.-..|.+|.+.. +. ......+.|..++.|-.|++....+++++ +..+.+|+....
T Consensus 185 s~lFv~Tt~~V~~y~l~g-r~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSG-RT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred eeEEEEecceeEEEEecC-CC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 7 5566778899999984 33 22233344578899999987666455554 456778777543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.5e-05 Score=76.13 Aligned_cols=247 Identities=13% Similarity=0.134 Sum_probs=137.5
Q ss_pred EeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCC
Q 001535 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1058)
Q Consensus 339 ~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1058)
...+|...|..++|||...-++..++.+..|.|.|+.+...+.+ +..| ..+.+++|.-|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDE 247 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCC
Confidence 33448889999999999776788899999999999998776543 3334 789999999876
Q ss_pred C-EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEee------cCCCeeEEEEEeCCCcEEEEe---cCCCeeE
Q 001535 419 N-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------YPNKLLCVVTCGDDKLIKVWE---LSGRKLF 488 (1058)
Q Consensus 419 ~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s------~d~~~~~l~s~~~d~~i~iwd---~~~~~~~ 488 (1058)
. +|..|-.+|.|.|||+...+.......-.-...+|..++.- +-|. +++..+. .+..|+ ..+....
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~p~ 323 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECLPC 323 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCCCc
Confidence 5 55667788999999998665433211111123345554433 2344 3443333 245666 2222222
Q ss_pred Eee-cccCCeeEEeecccCCceEEEEEeeCCe------EEE-EecCCCCceEE-eeCC-CC------cEEEEEEccCCCE
Q 001535 489 NFE-GHEAPVYSICPHHKENIQFIFSTAIDGK------IKA-WLYDTMGSRVD-YDAP-GH------WCTTMLYSADGSR 552 (1058)
Q Consensus 489 ~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~------i~~-wd~~~~~~~~~-~~~~-~~------~i~~i~~s~~~~~ 552 (1058)
.+. +..+...++..++..+ ..|++.-.+.. +-. -|..++..... ...+ +. .-..+.-.++.++
T Consensus 324 vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 324 VLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred ccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence 222 1244455555544332 34444332110 000 01111111110 0001 11 1112233456666
Q ss_pred EEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 001535 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGEDSQIKFWDMD 615 (1058)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~vwd~~ 615 (1058)
++..+. ..+.+.+||..+++.++++.... ++..++.. -++.-++..-.|..++||..+
T Consensus 403 iv~~gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 403 IVVVGD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred EEEecC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 665542 57889999999999999988763 45544433 234333333345578887654
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00016 Score=79.43 Aligned_cols=243 Identities=13% Similarity=0.107 Sum_probs=125.4
Q ss_pred ccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCC
Q 001535 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1058)
Q Consensus 765 ~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1058)
+.+....++++..++++++..|.|.++-+.. ...+. .+........|...|++++|++|++
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~------------------~~~~t~~d~~~~~rVTal~Ws~~~~ 137 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRD------------------LDYVTPCDKSHKCRVTALEWSKNGM 137 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCc------------------ceeeccccccCCceEEEEEeccccc
Confidence 3455667788888888888888888886543 11111 1110111112788999999999999
Q ss_pred EEEEEe-CCcEEEEECCCc----eEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCcee--eeEecccCCC
Q 001535 845 YVMSAT-GGKISLFNMMTF----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV--KSKLKGHQKR 917 (1058)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~--~~~~~~h~~~ 917 (1058)
.+.+|. .|+|..-.+.+. -..+.+..-.+.|..+.+.. +.+|++...- -.+++++.++. +..-....-.
T Consensus 138 k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r--~~Lc~tE~eti~QIG~k~R~~~~ 213 (726)
T KOG3621|consen 138 KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR--CILCQTEAETITQIGKKPRKSLI 213 (726)
T ss_pred EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh--hheeecchhHHHHhcCCCcCCcc
Confidence 999998 799988887762 11223333456787787763 4455443322 23444443321 1111111101
Q ss_pred eeEEEEcCC----CCEEEEEeCCCcEEEEECCC-CceeceEEEecCCCC------------------CCCCceEEEE---
Q 001535 918 ITGLAFSTS----LNILVSSGADAQLCVWSIDT-WEKRKSVTIHIPAGK------------------TPTGDTRVQF--- 971 (1058)
Q Consensus 918 V~~l~~s~d----~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~------------------~~~~v~~l~~--- 971 (1058)
-.+.+|-|. .+-.+.++.-| .|+|.++- |+.+.+..+...... .+..-..+.|
T Consensus 214 ~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~ 292 (726)
T KOG3621|consen 214 DFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKS 292 (726)
T ss_pred ccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCcccccccee
Confidence 234455443 33444566665 78887753 444444332210000 0011112222
Q ss_pred --cCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001535 972 --NADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 972 --s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
-.++ .+++-.+..|+|+|..+.+.+.-... ...|..++ .+|.-|++-..|+.+++..+.+
T Consensus 293 ~~l~~~-~vLa~te~Giyv~d~~~~~v~l~se~----~~DI~dVs--~~~neiFvL~~d~~l~~~sv~s 354 (726)
T KOG3621|consen 293 STLHSD-RVLAWTEVGIYVFDSNNSQVYLWSEG----GHDILDVS--HCGNEIFVLNLDRGLKVESVAS 354 (726)
T ss_pred EEeecc-eEEEeecceEEEEEeccceEEEeecC----CCceeEEe--ecCceEEEEecCCceeEEEeeh
Confidence 1222 34444444588888776554433212 23444444 3444555555566666666544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=89.07 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=116.0
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceec
Q 001535 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 951 (1058)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~ 951 (1058)
...++|++++ +++++.|+.+|.|++++....- .+...|+.. .-+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3457788885 4799999999999999866443 333345444 5679999999999999999999988777
Q ss_pred eEEEecCCCCCCCCceEEEEcCC-----CCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001535 952 SVTIHIPAGKTPTGDTRVQFNAD-----QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1058)
Q Consensus 952 ~~~~~~~~~~~~~~v~~l~~s~d-----~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~ 1026 (1058)
....+ -++.+++++|| .+.+++|....+.++.-+=.........+.. .++|.++.|- |.++|-++
T Consensus 108 ~~df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~-eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 108 QYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEG-EGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred eEecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecC-ccceEEEEec--CcEEEEec
Confidence 66666 77899999998 4567776554477776442222222222221 7899999995 77888888
Q ss_pred CCCcEEEEeCCCCeEEEEEcCcc
Q 001535 1027 CDGNIGVFDADTLRLRCYIAPST 1049 (1058)
Q Consensus 1027 ~dg~i~iw~~~~~~~~~~~~~~~ 1049 (1058)
.+| |+|||..+++.+..+.+..
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred CCC-cEEEeccccceeeccCCCC
Confidence 666 8999999999999888655
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.8e-06 Score=51.40 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHhc
Q 001535 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (1058)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Es 32 (1058)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0018 Score=74.38 Aligned_cols=190 Identities=11% Similarity=0.101 Sum_probs=114.2
Q ss_pred EEEEEeCCCcEEEEe-cCCCeeEEeecccC------Cee--EEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC
Q 001535 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA------PVY--SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~------~v~--~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 537 (1058)
.++.++.++.|+-.| .+|+.+-++..... .+. .+++ . ++..++.++.++.|..+|.++++....+...
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--W-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--c-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 466677789999999 88888766543322 010 1111 1 2257888889999999999999988877654
Q ss_pred CCc-----E-EEEEEccCCCEEEEEeccC-----CCCceEEEEeCCCCceeeeeecccCc-------------------c
Q 001535 538 GHW-----C-TTMLYSADGSRLFSCGTSK-----DGDSFLVEWNESEGTIKRTYAGFRKK-------------------S 587 (1058)
Q Consensus 538 ~~~-----i-~~i~~s~~~~~l~~~~~~~-----~~~~~i~~wd~~~~~~~~~~~~~~~~-------------------~ 587 (1058)
... + .+..+. +..++.++.+. ..++.++.+|..+|+.+..+...... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 431 1 112222 24454443211 12578999999999988877643110 0
Q ss_pred e-eEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeeEeccCCCCC----CCceEEee----CC
Q 001535 588 N-GVVQFDTTQNHFLAVGEDS------------------QIKFWDMDNVNILTSTDAEGGLP----NLPRLRFS----KE 640 (1058)
Q Consensus 588 i-~~~~~~~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~~----~v~~v~~s----~~ 640 (1058)
+ ...++.+.+..+++++.++ .|.-+|..+|+..-......+.. ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 0 1234455567788887665 68888999998887765322210 00001111 12
Q ss_pred CC---EEEEEECCCcEEEEEccCC
Q 001535 641 GN---LLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 641 ~~---~l~~~~~dg~i~iw~~~~~ 661 (1058)
+. .++.++.+|.+...|..++
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG 321 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTG 321 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCC
Confidence 32 5666777888888887776
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0084 Score=63.36 Aligned_cols=278 Identities=14% Similarity=0.112 Sum_probs=133.8
Q ss_pred EeecCCCeEEEEEeccc--eEEEEEccCCCccccccceeecccccCcccccccccCCC-cceEEEEECCCCCEEEEEeCC
Q 001535 351 DFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTK 427 (1058)
Q Consensus 351 ~~sp~g~~lla~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d 427 (1058)
+|.+||++||.++..|| .+.+-|+.+++... |.... .......++|+++.++....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 57899998888887676 55666777766542 22222 222246677999998877677
Q ss_pred CeEEEEEecCCCcceeeeeecccccCeEEEEee--cCCCeeEEEEEeC----------------------CCcEEEEe-c
Q 001535 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCGD----------------------DKLIKVWE-L 482 (1058)
Q Consensus 428 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s--~d~~~~~l~s~~~----------------------d~~i~iwd-~ 482 (1058)
..|+-.|+.+.+.. .+ +......+-...|. .|+. .++..-. .+.|.--| .
T Consensus 102 ~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 78988899887643 33 33344445445554 3454 3332210 12233344 3
Q ss_pred CCCeeEEeecccCCeeEEeecccCCceEEEEEee---CCe-EEEEecCCCCceEE-e--eCCCCcEEEEEEccCCCEEEE
Q 001535 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGK-IKAWLYDTMGSRVD-Y--DAPGHWCTTMLYSADGSRLFS 555 (1058)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~~wd~~~~~~~~~-~--~~~~~~i~~i~~s~~~~~l~~ 555 (1058)
+|+. ..+..-...+..+.|+|.. ..+|+.|-+ +.. -|+|-+++...... + ......+..=-|.|||..+..
T Consensus 177 tG~~-~~v~~~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGER-KVVFEDTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--E-EEEEEESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCce-eEEEecCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 3333 3333345566777787753 344444432 221 36676655433221 1 122335666779999998876
Q ss_pred Eec-cCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCc
Q 001535 556 CGT-SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVN 618 (1058)
Q Consensus 556 ~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~ 618 (1058)
.+. .+..+..|.-+|+.+++........ .......++||+.++-=+.| .-|+++++..+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 543 3334667888899888654433221 22335557788877653332 246778887766
Q ss_pred eeeEecc-------CCC-CCCCceEEeeCCCCEEEEEEC-CCcEEEEEc
Q 001535 619 ILTSTDA-------EGG-LPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1058)
Q Consensus 619 ~~~~~~~-------~~~-~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~ 658 (1058)
....... .++ ...=....|+|||++++..|+ .|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 5322211 010 001256899999998877665 566666543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0021 Score=70.22 Aligned_cols=252 Identities=15% Similarity=0.228 Sum_probs=134.0
Q ss_pred cEEEEEeecCCCeEEEEEeccceEEEEEccCCCccc------c------------ccceeecccccCcc------ccccc
Q 001535 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------S------------KPFKIWDMAACSLP------FQASI 401 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~------~------------~~~~~~~~~~~~~~------~~~~~ 401 (1058)
.|+.|.|+++... ||+|...|.|.||.+...+... . .+-++-|+.....+ .+...
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999774 7999999999999987654332 0 01223333322211 12234
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecc------cccCeEEEEeec-----CC-CeeEEE
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (1058)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~v~~l~~s~-----d~-~~~~l~ 469 (1058)
+....++|++++.| |=-++|.|..+|.+.|.|++....+... .+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55568999999998 5559999999999999999776654431 2222 344688898872 22 225888
Q ss_pred EEeCCCcEEEEe-c--C-CCeeEEe----ecccCCeeEEeecccCCc-------------------eEEEEEeeCCeEEE
Q 001535 470 TCGDDKLIKVWE-L--S-GRKLFNF----EGHEAPVYSICPHHKENI-------------------QFIFSTAIDGKIKA 522 (1058)
Q Consensus 470 s~~~d~~i~iwd-~--~-~~~~~~~----~~h~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~~ 522 (1058)
.|...|.+.+|. . . |.-...+ ..+.++|..+......+| +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 999999999997 2 2 2222111 245677776653211111 12455556788999
Q ss_pred EecCCCCceEEeeCCCCcEEEEEEc-----cCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccC---cceeEEEEc
Q 001535 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (1058)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~i~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~i~~~~~~ 594 (1058)
+...+.+...........+..+++- ..+..|++.. .+|.++++.+..-+.+..+..... ..+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766555444232344445553 2444555554 489999999999888877765422 123335566
Q ss_pred CCCCEEEEEe
Q 001535 595 TTQNHFLAVG 604 (1058)
Q Consensus 595 ~~~~~l~~~~ 604 (1058)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6666544443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0037 Score=71.75 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=66.0
Q ss_pred EEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEE------------------ECCCCEEEEEccCc
Q 001535 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG------------------TEDSTIHIYNVRVD 905 (1058)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg------------------~~dg~v~iwd~~~~ 905 (1058)
.+++++ +|.+...|.++|+.+....... ..++.+| + .+..+ ..+|.+.-.|..+|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 455555 8999999999999887664211 1123333 2 22221 23577888888888
Q ss_pred eeeeEecccC--------CCe--eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEE
Q 001535 906 EVKSKLKGHQ--------KRI--TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 955 (1058)
Q Consensus 906 ~~~~~~~~h~--------~~V--~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 955 (1058)
+.+-+..... .+. ..+.. .+..++.++.||.|+.+|.++|+.+-...+
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 8776654321 111 11222 456888889999999999999997766544
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0023 Score=69.89 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=82.0
Q ss_pred CCCeeEEEEecC-CCEEEEE----e-CCc----EEEEECCCceEEEE--e-cCCCCCeeEEEEecCCCcEEEEEECCCCE
Q 001535 831 EEAVPCIALSKN-DSYVMSA----T-GGK----ISLFNMMTFKVMTT--F-MSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1058)
Q Consensus 831 ~~~v~~~~~s~d-g~~la~~----~-dg~----i~vwd~~~~~~~~~--~-~~~~~~i~~l~~s~~~~~~lasg~~dg~v 897 (1058)
+....++.||.. ...+.+. + +|. -.+|+....+..+. . -.....|.|.+++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 344467777763 3333322 1 343 56777765543221 1 13667899999999 88999999999999
Q ss_pred EEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001535 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948 (1058)
Q Consensus 898 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~ 948 (1058)
.+||...+... +....-..+.++|+|+|..+++|+.-|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99998776322 22344567899999999999999999999999997643
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-06 Score=64.15 Aligned_cols=52 Identities=38% Similarity=0.552 Sum_probs=43.4
Q ss_pred HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHhHHhHhhhcCCH
Q 001535 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (1058)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~ 90 (1058)
+..++++|+.|+|+.|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999988655433333 39999999999999998764
|
Alpha-helical motif of unknown function. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00099 Score=72.69 Aligned_cols=261 Identities=13% Similarity=0.139 Sum_probs=139.1
Q ss_pred cEEEEEEecCcceEEEeeccCeeEEeeeeccccCC-CCcccc-----------cccceeeccC--------CCceeeeec
Q 001535 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATA-----------SAVPQHWLPS--------SGLLMANDV 825 (1058)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~-~g~~~~-----------~~~~~~~~~~--------~~~~~~~~~ 825 (1058)
.|..+.|.++..-|+++...|.|.||.+..+.... ...... ...-.+.|+. .|......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57889999999999999999999999998764432 000000 0011222222 232222233
Q ss_pred cCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEe--cC------CCCCeeEEEEec----CCC---cEEE
Q 001535 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF--MS------PPPASTFLAFHP----QDN---NIIA 889 (1058)
Q Consensus 826 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~--~~------~~~~i~~l~~s~----~~~---~~la 889 (1058)
.. ..++|++++.| |=-++|+|. +|.+.|.|++....+..- .. ....++++.|+- +|+ -.+.
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 33 47899999997 555999998 899999999877776552 12 234588888872 233 4688
Q ss_pred EEECCCCEEEEEcc--C-c----eeeeEecccCCCeeEEE-EcCC-C-------------------CEEEEEeCCCcEEE
Q 001535 890 IGTEDSTIHIYNVR--V-D----EVKSKLKGHQKRITGLA-FSTS-L-------------------NILVSSGADAQLCV 941 (1058)
Q Consensus 890 sg~~dg~v~iwd~~--~-~----~~~~~~~~h~~~V~~l~-~s~d-~-------------------~~l~s~s~Dg~i~i 941 (1058)
+|...|.+.+|.+- . + +.......+.++|..+. |+.+ | +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999999875 1 2 12222234667766665 3222 1 12333444667999
Q ss_pred EECCCCceeceEEEecCCCCCCCCceEEEEc-----CCCCEEEE-EECCeEEEEECCCCeeeeeeccCC-CCCCCEEEEE
Q 001535 942 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN-----ADQVRMLV-VHETQLAIYDASKMERIRQWTPQD-ALSAPISCAV 1014 (1058)
Q Consensus 942 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----~d~~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~v~~l~ 1014 (1058)
+...+.+...... . .. -....+.+- ..+..|++ ..+|.+++|.+...+.+....... .+...+....
T Consensus 240 ~~~~~~k~~~K~~-~--~~---~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 240 FKPPKSKGAHKSF-D--DP---FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp E-TT---EEEEE--S--S----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred EeCCCCcccceee-c--cc---cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 9998876544332 1 00 122234442 23444444 479999999999999888776632 1123445677
Q ss_pred EccCCCEEEEEeCCCcEEEEeC
Q 001535 1015 YSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 1015 ~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
|+++|..++..+ ...+.++.+
T Consensus 314 is~~Gdi~~~~g-psE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTG-PSEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-S-SSEEEEEEE
T ss_pred ECCCCCEEEEeC-cccEEEEEE
Confidence 789999776665 445444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.4e-05 Score=80.61 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=66.9
Q ss_pred ceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEEC
Q 001535 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1058)
Q Consensus 336 ~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1058)
.....+...+.|.|++++|+..+ |+.|+.||+|++||...+... +..+.-.++.++|+
T Consensus 251 vsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~---------------------~~ka~~~P~~iaWH 308 (545)
T PF11768_consen 251 VSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTL---------------------LAKAEFIPTLIAWH 308 (545)
T ss_pred EEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeee---------------------eeeecccceEEEEc
Confidence 34455679999999999999994 899999999999998765332 22234567899999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCC
Q 001535 416 PDGNYVGVAFTKHLIQLYSYAGS 438 (1058)
Q Consensus 416 pdg~~las~~~dg~i~iwd~~~~ 438 (1058)
|+|..+++|+..|.+.+||+.-+
T Consensus 309 p~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 309 PDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCCcEEEEEcCCceEEEEEeecC
Confidence 99999999999999999998754
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.025 Score=65.18 Aligned_cols=111 Identities=11% Similarity=0.030 Sum_probs=65.5
Q ss_pred eEEEEEeeCCeEEEEecCCCCceEEeeCCCC-cEE----------EEEEccCCCEEEEEeccCCCCceEEEEeCCCCcee
Q 001535 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1058)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~----------~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1058)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.+. .++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 3566667777888888888777776654221 111 1122 123455544 3788999999999998
Q ss_pred eeeecccCcceeEEEEcC--CCCEEEEEe------CCCcEEEEECCCCceeeEecc
Q 001535 578 RTYAGFRKKSNGVVQFDT--TQNHFLAVG------EDSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~--~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~ 625 (1058)
..........-..+.-+| .+..++++. .+|.|+.+|.++|+.+-....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 776532110000111111 133555554 268999999999998876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=79.76 Aligned_cols=182 Identities=16% Similarity=0.204 Sum_probs=116.7
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CC--cEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEE-EEECCC--CEEEEE
Q 001535 830 LEEAVPCIALSKNDSYVMSAT---GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA-IGTEDS--TIHIYN 901 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~---dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la-sg~~dg--~v~iwd 901 (1058)
....+..-+|+|+++.++..+ .+ .+.++++.+++....+. -.+.-...+||| ||+.|+ +...|| .|++.|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC-CCCEEEEEECCCCCccEEEEc
Confidence 345566778999999877664 33 49999999887655444 233345678999 555554 555666 466667
Q ss_pred ccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEE
Q 001535 902 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD-A--QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1058)
Q Consensus 902 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l 978 (1058)
+.++.. ..+..-.+.-+.-.|+|||++++..+.. | .|.+.|.+.+.. ..+... + ..-..-.|||||+++
T Consensus 269 l~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~---~---~~~~~p~~SpdG~~i 340 (425)
T COG0823 269 LDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS---G---GGNSNPVWSPDGDKI 340 (425)
T ss_pred CCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc---C---CCCcCccCCCCCCEE
Confidence 777663 3355444444477899999999877643 3 477777777654 111111 1 222367899999999
Q ss_pred EEEE--CCe--EEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEE
Q 001535 979 LVVH--ETQ--LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 1025 (1058)
Q Consensus 979 ~~~~--d~~--v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~ 1025 (1058)
+... ++. |.+.|..++...+.+.. ........|.++|+.+...
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt~----~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILTS----TYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEccc----cccCCCCCcCCCCceEEEe
Confidence 9854 455 77777777665444333 3344566778888866643
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=53.27 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHhhhcCHHHHHHHHHHhcCCC
Q 001535 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1058)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1058)
.++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00091 Score=74.01 Aligned_cols=218 Identities=11% Similarity=0.113 Sum_probs=117.4
Q ss_pred cccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCC
Q 001535 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1058)
Q Consensus 764 ~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1058)
......+.++|+|+.+++ +.+|...+|.-. ..... ..+.....+|.+.+
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~----------------------~~r~k--------~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTAL----------------------AWRNK--------AFGSGLSFVWSSRN 80 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETT----------------------TTEEE--------EEEE-SEEEE-TSS
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEcc----------------------CCccc--------ccCceeEEEEecCc
Confidence 345678999999997777 667777777410 00000 22345578898877
Q ss_pred CEEEEEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEE
Q 001535 844 SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (1058)
Q Consensus 844 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 923 (1058)
++.+.-..++|.++.--+.+....+... ..+..+. .|.+|...+.+ .|.+||+.+++.+.++... +|..+.|
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 6555444788999632222221233211 1233333 26677766644 8999999999999998743 4899999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC------------ceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEEC
Q 001535 924 STSLNILVSSGADAQLCVWSIDTW------------EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 991 (1058)
Q Consensus 924 s~d~~~l~s~s~Dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~ 991 (1058)
+++|.+++..+.+ .+.|++.+.. ......... ..|.+.+|..| .++......++. +
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-------~~IkSg~W~~d--~fiYtT~~~lkY--l 220 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS-------ERIKSGCWVED--CFIYTTSNHLKY--L 220 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--------S--SEEEEETT--EEEEE-TTEEEE--E
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec-------ceeEEEEEEcC--EEEEEcCCeEEE--E
Confidence 9999999988866 5888776553 111111111 67899999887 444444346666 3
Q ss_pred CCCee--eeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001535 992 SKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 992 ~~~~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
-.|+. +..+ ..++.-+.+.+....++....|+.|..+.++.
T Consensus 221 ~~Ge~~~i~~l------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 221 VNGETGIIAHL------DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ETTEEEEEEE-------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EcCCcceEEEc------CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 33432 3332 45677778888777888888899998887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00092 Score=73.96 Aligned_cols=177 Identities=15% Similarity=0.212 Sum_probs=101.3
Q ss_pred CCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeE
Q 001535 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1058)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1058)
......+.++|+|++++++++|...+|.......... +.-...+|++ +++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 4457889999999999999999999998655544332 2345688988 666 55566688999974333333233
Q ss_pred ecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEE
Q 001535 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYD 990 (1058)
Q Consensus 911 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d 990 (1058)
++.. ..+..+.. |.+|...+.+ .|.+||+.+++.+..+.. .+|..+.||++|.+++...+..+.+++
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--------~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--------SAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---------E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--------CCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 3322 23444443 8888877655 799999999887665543 347899999999999998888888887
Q ss_pred CCCC-----------eeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001535 991 ASKM-----------ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1033 (1058)
Q Consensus 991 ~~~~-----------~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~i 1033 (1058)
.+.. ..+..+... ...|.+.+|..| -+++|.. . .++.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYtT~-~-~lkY 219 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYTTS-N-HLKY 219 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE-T-T-EEEE
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEEcC-C-eEEE
Confidence 5543 012222111 456777788766 3444433 3 5655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00017 Score=81.18 Aligned_cols=184 Identities=13% Similarity=0.128 Sum_probs=136.6
Q ss_pred EEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEE
Q 001535 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~ 545 (1058)
.++-|+....+..+| .+++..+...-..+.|.-++. +++.+.+|...|+|.+-|.++.+...++..|.+.+..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 467777777788889 666666655545545666653 568999999999999999999999999999999887755
Q ss_pred EccCCCEEEEEeccCC-----CCceEEEEeCCCCceeeeeecccCcceeEEEEcCCC-CEEEEEeCCCcEEEEECCC-Cc
Q 001535 546 YSADGSRLFSCGTSKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDN-VN 618 (1058)
Q Consensus 546 ~s~~~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~vwd~~~-~~ 618 (1058)
-.|+.|+++|.+.. -|..|.+||++..+.+.-+.-+.+. ..+.|.|.- ..+++++..|...+-|..+ +.
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccceEEEEecccceeeccccccCC
Confidence 47889999886542 3667899999988776655554442 346677753 6788888999999998332 11
Q ss_pred e-eeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEc
Q 001535 619 I-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 619 ~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
+ ......+.....+..+.+++++..++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 1 222222222335889999999999999999999999983
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0082 Score=67.96 Aligned_cols=251 Identities=13% Similarity=0.077 Sum_probs=134.2
Q ss_pred cEEEEEeecCCCeEEEEEeccc----eEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
.+....+||||++++.+-+..| +|+++|+.+|+.+.. . +.. ..-..+.|++|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 3446789999996554534444 699999999976532 1 111 112239999999988
Q ss_pred EEEeCCC-----------eEEEEEecCCCcceeeeeecccccC--eEEEEeecCCCeeEEEEEeCC--CcEEEEe-cCC-
Q 001535 422 GVAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSG- 484 (1058)
Q Consensus 422 as~~~dg-----------~i~iwd~~~~~~~~~~~~l~~h~~~--v~~l~~s~d~~~~~l~s~~~d--~~i~iwd-~~~- 484 (1058)
+....+. .|..|.+.++..-.. ..+...... ...+..++|++.+++.+.+.. ..+.+.| ..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7665332 377777776543211 123333332 678899999996333233322 3477777 433
Q ss_pred ---CeeEEeecccCCeeEEeecccCCceEEEEEe---eCCeEEEEecCCCCc---eEEeeCCCCcEEEEEEccCCCEEEE
Q 001535 485 ---RKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFS 555 (1058)
Q Consensus 485 ---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~---~~~~~~~~~~i~~i~~s~~~~~l~~ 555 (1058)
.....+......+....-+. ++.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+.
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 23344433333333322222 333444332 235676677776653 2244444443333333345556665
Q ss_pred EeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEE--e--CCCcEEEEECCCCcee
Q 001535 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--G--EDSQIKFWDMDNVNIL 620 (1058)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~--~dg~i~vwd~~~~~~~ 620 (1058)
... .++...|.++++..+.....+.......+..+...++++.+... + .-++++.||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 543 34577899999984555555554444345555555555544432 2 3467888999888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.013 Score=61.93 Aligned_cols=227 Identities=12% Similarity=0.066 Sum_probs=108.9
Q ss_pred EECCCCCEEEEEeC-C--CeEEEEEecCCCcceeeeeecccc-cCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCee
Q 001535 413 AWSPDGNYVGVAFT-K--HLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1058)
Q Consensus 413 ~~spdg~~las~~~-d--g~i~iwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~ 487 (1058)
+|.+||+.|+.++. | ..+.+.|+.+++..+ |.... .......++++++ .++-......|+-.| .+.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcEE
Confidence 67889987776654 4 457777888876554 43332 2233566778887 454444556888888 666554
Q ss_pred EEeecccCCeeEEeecccCCceEEEEEee----------------------CCeEEEEecCCCCceEEeeCCCCcEEEEE
Q 001535 488 FNFEGHEAPVYSICPHHKENIQFIFSTAI----------------------DGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1058)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~~wd~~~~~~~~~~~~~~~~i~~i~ 545 (1058)
..+......+-...|..+.|+..++-.-. ...|.--|+.+++....+. ....+..+.
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~ 194 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQ 194 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcc
Confidence 55555555555556655556655543321 1234445666655444433 556788899
Q ss_pred EccCCCEE-EEEeccCCC--CceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEe-----CCCcEEEEECCCC
Q 001535 546 YSADGSRL-FSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-----EDSQIKFWDMDNV 617 (1058)
Q Consensus 546 ~s~~~~~l-~~~~~~~~~--~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~vwd~~~~ 617 (1058)
|+|....+ +.|-.+.-. +..|.+.+.+...............+..=.|.+||..+..-+ .+..|.-+|+.++
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 99965544 444432111 235555554433332222222233455567899998776533 3446777888887
Q ss_pred ceeeEeccCCCCCCCceEEeeCCCCEEEEEECC
Q 001535 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1058)
Q Consensus 618 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 650 (1058)
+........ .......++||++++-=+.|
T Consensus 275 ~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 275 ERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 664433322 23455667899888765544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0013 Score=72.58 Aligned_cols=195 Identities=16% Similarity=0.167 Sum_probs=114.5
Q ss_pred ceEEeec-CCCcEEEEEeecCCCeEEEEEe--cc-ceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEE
Q 001535 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGS--SN-GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1058)
Q Consensus 336 ~~~~~~~-h~~~V~~v~~sp~g~~lla~gs--~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1058)
.....+. -...+..-+|+|+++.+....- .. ..+.++++.+++.....+ +.+ .-..
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~~g---~~~~ 242 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------FNG---NNGA 242 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------cCC---ccCC
Confidence 3333344 5667888999999986433321 22 368999999887643211 222 3335
Q ss_pred EEECCCCCEEEEE-eCCCe--EEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCc--EEEEecCCCe
Q 001535 412 VAWSPDGNYVGVA-FTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL--IKVWELSGRK 486 (1058)
Q Consensus 412 l~~spdg~~las~-~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~ 486 (1058)
-+|||||++||.+ ..||. |.+.|+.++...+ +..-.+.-+.-.|+|||+. ++++.+..|. |.+.|.+|..
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCc
Confidence 6899999998855 45665 5555776665322 4333333447789999997 3444555554 5555566666
Q ss_pred eEEeecccCCeeEEeecccCCceEEEEEeeC-Ce--EEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEec
Q 001535 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAID-GK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 558 (1058)
...+......-..-.| ++||++++..+.. |. |.+.|+.+... ..............+.++|+.+...+.
T Consensus 318 ~~riT~~~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 318 VTRLTFSGGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eeEeeccCCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 5555443332223344 5577888777743 44 55555554443 222223333445667888888776653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.017 Score=58.41 Aligned_cols=199 Identities=15% Similarity=0.143 Sum_probs=110.1
Q ss_pred CcccEEEEEEecCcceEEEeec-cCeeEEeeeeccccCCCCcccccccceeeccCCCceeeee-ccCCCCCCCeeEEEEe
Q 001535 763 TSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND-VAGVNLEEAVPCIALS 840 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s 840 (1058)
-...+..++|.|+...|++... .+.|..++ .+|.++... +. .......+++.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els-----------------------~~G~vlr~i~l~---g~~D~EgI~y~ 73 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELS-----------------------LDGKVLRRIPLD---GFGDYEGITYL 73 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEE-----------------------TT--EEEEEE-S---S-SSEEEEEE-
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEc-----------------------CCCCEEEEEeCC---CCCCceeEEEE
Confidence 5667999999998776666655 55554443 123433322 32 24667889998
Q ss_pred cCCCEEEEEe-CCcEEEEECCCc------eEEEEec-----CCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccC---c
Q 001535 841 KNDSYVMSAT-GGKISLFNMMTF------KVMTTFM-----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---D 905 (1058)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~------~~~~~~~-----~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~---~ 905 (1058)
.++.++++.. ++.+.++++... .....+. .+...+-.++|++ .++.|.++-+..-..+|.+.. .
T Consensus 74 g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~ 152 (248)
T PF06977_consen 74 GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGG 152 (248)
T ss_dssp STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-S
T ss_pred CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCc
Confidence 8887777665 788988888321 1112222 2345688999999 555555666676677777664 2
Q ss_pred eeee--E------ecccCCCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeceEEEecCCC---CCCCCceEEEEcC
Q 001535 906 EVKS--K------LKGHQKRITGLAFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG---KTPTGDTRVQFNA 973 (1058)
Q Consensus 906 ~~~~--~------~~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~ 973 (1058)
..+. . .......+.++++.|.. ++++-...+..|..+| .+|+.+..+.+..... ......-.|+|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 153 FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 1111 1 11234567899999864 5666677778899999 6666666555543211 1113567899999
Q ss_pred CCCEEEEEECCeEEEE
Q 001535 974 DQVRMLVVHETQLAIY 989 (1058)
Q Consensus 974 d~~~l~~~~d~~v~v~ 989 (1058)
+|.+.+++..+..+++
T Consensus 232 ~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 232 DGNLYIVSEPNLFYRF 247 (248)
T ss_dssp T--EEEEETTTEEEEE
T ss_pred CCCEEEEcCCceEEEe
Confidence 9999988877766665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=1e-05 Score=87.19 Aligned_cols=206 Identities=13% Similarity=0.186 Sum_probs=131.1
Q ss_pred CCCcEEEEEeecCCC-eEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECC-CCCE
Q 001535 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~-~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 420 (1058)
....+.|++++-+.+ -++++|..+|.|.+-.+.....- -..+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 345788888765433 58999999999999887653321 0123556888999999999 6778
Q ss_pred EEEEe----CCCeEEEEEecCCCc-ceeeeeecc-cccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeeccc
Q 001535 421 VGVAF----TKHLIQLYSYAGSND-LRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1058)
Q Consensus 421 las~~----~dg~i~iwd~~~~~~-~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~ 494 (1058)
||.|- .|..+.|||+.++-. .+....+.+ -.....+++|-.+.+ ++.+|...+.++++|....+.....-.+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 88773 356799999988621 111111222 344566889998777 7889998999999993333322222223
Q ss_pred CCeeEEeecccCCceEEEEEeeCCeEEEEe-cCCCCceEEeeCC-C----CcEEEEEEccCCC-EEEEEeccCCCCceEE
Q 001535 495 APVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAP-G----HWCTTMLYSADGS-RLFSCGTSKDGDSFLV 567 (1058)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd-~~~~~~~~~~~~~-~----~~i~~i~~s~~~~-~l~~~~~~~~~~~~i~ 567 (1058)
..+..+.+.|- .+.++++-. ||.|-+|| ....+.......+ . ..+..++|+|... .+++... ..+.|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 33445555442 234665554 99999999 4333332221111 1 2488999999654 4555554 478899
Q ss_pred EEeCC
Q 001535 568 EWNES 572 (1058)
Q Consensus 568 ~wd~~ 572 (1058)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.014 Score=64.56 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=146.0
Q ss_pred eeEEEEecCCCEEEEEe--CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEEC---CCCEEEEEccCceee
Q 001535 834 VPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DSTIHIYNVRVDEVK 908 (1058)
Q Consensus 834 v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~---dg~v~iwd~~~~~~~ 908 (1058)
-..+++++++..+.... ++.|.+.|..+.+......... ....+++++ +++.+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45678889888655554 6889999988777766654322 567899999 6655444443 689999999999888
Q ss_pred eEecccCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEE--C--
Q 001535 909 SKLKGHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-- 983 (1058)
Q Consensus 909 ~~~~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--d-- 983 (1058)
.....-..+ ..++++|+|..+..+. .++.|.+.|..+..... -..... -........+.++|+|.++.+.. +
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~-~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSL-VGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccc-cccCCCCceEEECCCCCEEEEEeccCCC
Confidence 776544445 8999999999666554 78899999977754332 110000 01115557899999999887753 2
Q ss_pred CeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEEEEEcCc
Q 001535 984 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC-DGNIGVFDADTLRLRCYIAPS 1048 (1058)
Q Consensus 984 ~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~ 1048 (1058)
+.+...|..++.....-..... . ....+.++|+|+.+.+... .+.+.+-|..+......+...
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred ceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 5788899888877665222211 2 4667899999999988754 488999999988777765543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.025 Score=59.86 Aligned_cols=234 Identities=12% Similarity=0.113 Sum_probs=135.9
Q ss_pred cCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCc
Q 001535 774 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853 (1058)
Q Consensus 774 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~ 853 (1058)
..++.|+.|+.+| +.++++... .... ... ....|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~-~i~----~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPT-RIL----KLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC---------------------ccce-eEe----ecceEEEEEEecccCEEEEEcCCc
Confidence 3567788998888 777775110 0000 001 334499999999989998889999
Q ss_pred EEEEECCCceEEEEe--------------cCCCCCeeEEE--EecCCCcEEEEEECCCCEEEEEccCc-----eeeeEec
Q 001535 854 ISLFNMMTFKVMTTF--------------MSPPPASTFLA--FHPQDNNIIAIGTEDSTIHIYNVRVD-----EVKSKLK 912 (1058)
Q Consensus 854 i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~~~~~lasg~~dg~v~iwd~~~~-----~~~~~~~ 912 (1058)
+.++++......... ......+...+ -...+...|+++. ..+|.+|..... +..+++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998765443311 01122344444 1122445555554 558988888653 3445555
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCC------CCCCCCceEEEEcCCCCEEEEEECCeE
Q 001535 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRMLVVHETQL 986 (1058)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~l~~s~d~~~l~~~~d~~v 986 (1058)
- .+.+..++|. ++.++.|..++ ..+.|+.++............ .....++..+.. +++.+|++-+ ..-
T Consensus 137 l-p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~-~~g 210 (275)
T PF00780_consen 137 L-PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD-NIG 210 (275)
T ss_pred c-CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEec-ceE
Confidence 3 3778899999 55777776554 899999987654333221111 001122333333 3456666543 222
Q ss_pred EEEECCCCeeee-eeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCc
Q 001535 987 AIYDASKMERIR-QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1048 (1058)
Q Consensus 987 ~v~d~~~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 1048 (1058)
.+.| ..|+..+ ..... .....++++. ..+|++.+. +.|.||++.+|+++..+...
T Consensus 211 ~fv~-~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 211 VFVN-KNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEc-CCCCcCcccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 2333 3444333 11111 3455666663 458887664 55999999999998888754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0019 Score=74.51 Aligned_cols=189 Identities=11% Similarity=0.057 Sum_probs=107.9
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--cEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECC--------
Q 001535 832 EAVPCIALSKNDSYVMSAT-------GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-------- 894 (1058)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d-------- 894 (1058)
..+...++||||+.+|... |. .|.+++.. +.......+ ...+.-.|+| +|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4578899999999887664 32 46666753 333222222 2478899999 87777666432
Q ss_pred ----CCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEE---EECCCCceeceEEEecCCCCCCCCce
Q 001535 895 ----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCV---WSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1058)
Q Consensus 895 ----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1058)
+.+.+.++..++... ...+.|..+.|||||.+++... ++.|.+ -....|+....-......+.. ..+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC-Cccc
Confidence 233333444443322 2346799999999999998766 577777 444555411111111111111 3358
Q ss_pred EEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001535 968 RVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1031 (1058)
Q Consensus 968 ~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i 1031 (1058)
++.|..++.+++...+....+|.+.-...............++..++=+++ -++.+..+|.+
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 899999999765544444444544322222222122222567888887763 45555656633
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.021 Score=63.58 Aligned_cols=174 Identities=7% Similarity=0.097 Sum_probs=94.1
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEECCCce------EEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCc
Q 001535 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFK------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1058)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~ 905 (1058)
+.+.++.|+.+.++++...||.+++||+.... .+....-....+.+..+.. +|-.+ -..++.+++.+--..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~Givv--Lt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK-NGIVV--LTGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC-CCEEE--ECCCCeEEEEeCccc
Confidence 78999999999899988889999999986332 1111111122233334433 45333 334555554432221
Q ss_pred e-eeeE---ecccC-----C-Cee-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCC
Q 001535 906 E-VKSK---LKGHQ-----K-RIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1058)
Q Consensus 906 ~-~~~~---~~~h~-----~-~V~-~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 974 (1058)
. .... +.+.. . ... ...++.+....+....++.+.+-+-...+. . . ..+++..++.||+
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-------i-~--~~~~i~~iavSpn 227 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-------I-D--SDGPIIKIAVSPN 227 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-------c-c--CCCCeEEEEECCC
Confidence 1 1111 11100 0 011 123444555555555555555333332111 0 0 1167899999999
Q ss_pred CCEEEEE-ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCC
Q 001535 975 QVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 1020 (1058)
Q Consensus 975 ~~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 1020 (1058)
|+++|.- .+|.+.+.+.+-.+....+.... ......+.|+.++.
T Consensus 228 g~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~da 272 (410)
T PF04841_consen 228 GKFIALFTDSGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDA 272 (410)
T ss_pred CCEEEEEECCCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCc
Confidence 9999984 67888888766555555555432 34556666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.021 Score=57.68 Aligned_cols=201 Identities=9% Similarity=0.091 Sum_probs=111.1
Q ss_pred CCCCeeEEEEecCCCEEEEEe--CCcEEEEECCCceEEEEecCC-CCCeeEEEEecCCCcEEEEEECCCCEEEEEccCce
Q 001535 830 LEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~ 906 (1058)
....++.++|.|+.+.|++.. .+.|.-++. +|+.++++.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 556699999999866555554 577888886 57888877543 34577888887 77777665568999999984321
Q ss_pred ------eeeEec-----ccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeceEEEe-cC-CCCCCCCceEEE
Q 001535 907 ------VKSKLK-----GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT---WEKRKSVTIH-IP-AGKTPTGDTRVQ 970 (1058)
Q Consensus 907 ------~~~~~~-----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~---~~~~~~~~~~-~~-~~~~~~~v~~l~ 970 (1058)
....+. .+...+-.|+|.+.++.|+.+-...-..||.+.. .......... .. .......+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 111221 2445689999999988888887776677777654 1111111111 01 111115678999
Q ss_pred EcCCCCEEEE-E-ECCeEEEEECCCCeeeeeeccCCC------CCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001535 971 FNADQVRMLV-V-HETQLAIYDASKMERIRQWTPQDA------LSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1058)
Q Consensus 971 ~s~d~~~l~~-~-~d~~v~v~d~~~~~~~~~~~~~~~------~~~~v~~l~~s~dg~~l~t~~~dg~i~iw 1034 (1058)
+.|....|++ + .+..+..+| .+|+.+..+....+ .-.....|+|.++|++ +..++-+..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 9997554444 5 467788888 66776655544321 0135789999999964 445566655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.11 Score=59.81 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=45.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCC--CC-------ceEEeeCCCCEEEEEECCCcEEEEEccCCcccc
Q 001535 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP--NL-------PRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1058)
Q Consensus 597 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~v-------~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1058)
+..+++++.++.|+-+|..+|+.+-......... .. ..+++ .+..++.++.++.+.-+|..++....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 5678888888999999999999888765432110 10 11222 23467778888999999998885433
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0026 Score=73.49 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=90.0
Q ss_pred CCCeeEEEEecCCCcEEEEEE------CCC--CEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCC-C-----
Q 001535 872 PPASTFLAFHPQDNNIIAIGT------EDS--TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD-A----- 937 (1058)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~------~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D-g----- 937 (1058)
...+...++|| +|+.+|... .|+ .+.+++. .+.......+. ..+.-.|+|||+.|++.... .
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777776655 244 4444454 22222222332 37889999999988877533 2
Q ss_pred ------cEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEE---EECCCCeeeee-----eccC
Q 001535 938 ------QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI---YDASKMERIRQ-----WTPQ 1003 (1058)
Q Consensus 938 ------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v---~d~~~~~~~~~-----~~~~ 1003 (1058)
.+.+.+++.++... .....|..+.|||||..++...+++|++ -....|. ... +...
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~ 494 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPG 494 (591)
T ss_pred ccCCCceEEEEeccCchhhh---------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecc
Confidence 22222333333211 1126799999999999999977888877 4544554 221 2211
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001535 1004 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 1004 ~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
....+..+.|..++.++ ++..++...+|.+
T Consensus 495 --l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 495 --LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred --cCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 13446889999999855 5555555556654
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00051 Score=70.82 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcC----------HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhhHH
Q 001535 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFF 74 (1058)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Es~~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (1058)
.+.+...|..|+...|..+.+..|-+|+|...+ +..+-+++..|+-+-|++.+..-...-.+..+ .+-|
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s-~LE~ 194 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSS-SLEF 194 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccc-cHHH
Confidence 344689999999999999999999999998753 77899999999999999998875322111112 3889
Q ss_pred HHHHhHHhHhhhcCCHH--HHHHHHHhhcccccccCHHHHHHHHHh
Q 001535 75 EIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQL 118 (1058)
Q Consensus 75 ~i~~~~~~ell~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (1058)
.+..+.|++++..|... +|+.+.|..++||........+.+-..
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~s 240 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGS 240 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHH
Confidence 99999999999999877 999999999999955554455555433
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.14 Score=56.95 Aligned_cols=136 Identities=16% Similarity=0.203 Sum_probs=76.9
Q ss_pred EEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEeccc-C
Q 001535 838 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-Q 915 (1058)
Q Consensus 838 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h-~ 915 (1058)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.+.+..-.+....+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 4455555555444 55666555433211 22 346899999999 9999999999999999887666666555433 2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCe
Q 001535 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 995 (1058)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~ 995 (1058)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..++|..-..-+
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~--------------------~~~~~~~~~~~~l~~E~DG~riit~~~~~ 317 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG--------------------DSISFWYDGPVILVSEIDGVRIITSTSHE 317 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC--------------------CceEEeccCceEEeccCCceEEEeCCceE
Confidence 344455555433222222 22233332111 23455555555555554457777766555
Q ss_pred eeeee
Q 001535 996 RIRQW 1000 (1058)
Q Consensus 996 ~~~~~ 1000 (1058)
.+..+
T Consensus 318 ~l~~V 322 (410)
T PF04841_consen 318 FLQRV 322 (410)
T ss_pred EEEEC
Confidence 55544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.019 Score=56.65 Aligned_cols=235 Identities=11% Similarity=0.165 Sum_probs=133.8
Q ss_pred EEEEeecCCCeEEEEEeccc-eEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeC
Q 001535 348 ISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1058)
Q Consensus 348 ~~v~~sp~g~~lla~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 426 (1058)
-.|+|+|.-.+-++.+-.-| ...++|.++.+..... ......-+.||. .|||||.+|...-+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-----------~s~~~RHfyGHG------vfs~dG~~LYATEn 133 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-----------VSQEGRHFYGHG------VFSPDGRLLYATEN 133 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-----------ecccCceeeccc------ccCCCCcEEEeecC
Confidence 35778887765666665555 4568898877654321 011122355664 69999999986533
Q ss_pred -----CCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeC------------------CCcEEEEe-c
Q 001535 427 -----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------------------DKLIKVWE-L 482 (1058)
Q Consensus 427 -----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~------------------d~~i~iwd-~ 482 (1058)
-|.|-|||...+ .....++..|.-.-..+.|.+||+. ++.+.. .-++.+.| .
T Consensus 134 dfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrt--lvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 134 DFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRT--LVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred CCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcE--EEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 377999999843 4455578889888999999999994 443321 11344555 5
Q ss_pred CCCeeEE--ee--cccCCeeEEeecccCCceEEEEEeeCCeE-----EEEecCCCCceEEeeCC-------CCcEEEEEE
Q 001535 483 SGRKLFN--FE--GHEAPVYSICPHHKENIQFIFSTAIDGKI-----KAWLYDTMGSRVDYDAP-------GHWCTTMLY 546 (1058)
Q Consensus 483 ~~~~~~~--~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i-----~~wd~~~~~~~~~~~~~-------~~~i~~i~~ 546 (1058)
+|..+.+ +. .+.-.|..++.. .||..++.+-..|.- .+=-...++....+... .+.|-+++.
T Consensus 210 tG~liekh~Lp~~l~~lSiRHld~g--~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~ 287 (366)
T COG3490 210 TGNLIEKHTLPASLRQLSIRHLDIG--RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAA 287 (366)
T ss_pred ccchhhhccCchhhhhcceeeeeeC--CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheee
Confidence 6655432 22 233445556552 344333222211110 00000111111111111 235678888
Q ss_pred ccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001535 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1058)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd 613 (1058)
+.+..+++..+. ..+...+||..+|..+..-.... +.-..+...-+++.+.+|.+.++.
T Consensus 288 n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~d-----aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 288 NRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPD-----AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cccCCeEEEecC---CCCeEEEEEcCCCcEEecccccc-----cccceeccCceEEecCCceEEecc
Confidence 877667666553 46778899999998876544322 122233445566777788888774
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=5.2e-05 Score=81.91 Aligned_cols=201 Identities=13% Similarity=0.155 Sum_probs=132.3
Q ss_pred CCCCeeEEEEecCC--CEEEEEe-CCcEEEEECCCceE--EEEecCCCCCeeEEEEecCCCcEEEEEE----CCCCEEEE
Q 001535 830 LEEAVPCIALSKND--SYVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGT----EDSTIHIY 900 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg--~~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~----~dg~v~iw 900 (1058)
....+.|++...+. -.+++|. +|.|.+-......- .....++....++++|++-|..+||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34456677766544 3667776 89988887654322 2233456778999999998888898875 45689999
Q ss_pred EccCc--ee--eeEecc-cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcC-C
Q 001535 901 NVRVD--EV--KSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-D 974 (1058)
Q Consensus 901 d~~~~--~~--~~~~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-d 974 (1058)
|+.++ .+ ...+.+ -.....+++|-.|.+++.+|...+.+.++|+.-... ....+.. ..+..+..+| .
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnT------k~vqG~tVdp~~ 207 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNT------KYVQGITVDPFS 207 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhh------hhcccceecCCC
Confidence 99876 11 122222 334566899998989999999999999999973211 1111111 3567788899 7
Q ss_pred CCEEEEEECCeEEEEE-CCCCeeeeeeccCCC--CCCCEEEEEEccCCC-EEEEE-eCCCcEEEEeCC
Q 001535 975 QVRMLVVHETQLAIYD-ASKMERIRQWTPQDA--LSAPISCAVYSCNSQ-LVFAT-FCDGNIGVFDAD 1037 (1058)
Q Consensus 975 ~~~l~~~~d~~v~v~d-~~~~~~~~~~~~~~~--~~~~v~~l~~s~dg~-~l~t~-~~dg~i~iw~~~ 1037 (1058)
+.|++...|+.+.+|| ..+-+.......+.. -...+..++|+|... .+++. -..++|+.+++.
T Consensus 208 ~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8899988899999999 333332222222210 023489999999543 34443 356789999884
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.13 Score=58.17 Aligned_cols=245 Identities=11% Similarity=0.109 Sum_probs=125.2
Q ss_pred cceEEEEECCCCCEEEEE-eCCC----eEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCC-------
Q 001535 407 ISVSRVAWSPDGNYVGVA-FTKH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------- 474 (1058)
Q Consensus 407 ~~V~~l~~spdg~~las~-~~dg----~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d------- 474 (1058)
..+...++||||+++|.+ +..| .+++.|+.+|+.+.. .+... ....+.|.+|++. ++++...+
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccC
Confidence 344568999999999965 3333 499999999865542 12211 1223999999985 34443322
Q ss_pred ---CcEEEEe-cCCCe--eEEeecccCC--eeEEeecccCCceEEEEEeeC----CeEEEEecCCC----CceEEeeCCC
Q 001535 475 ---KLIKVWE-LSGRK--LFNFEGHEAP--VYSICPHHKENIQFIFSTAID----GKIKAWLYDTM----GSRVDYDAPG 538 (1058)
Q Consensus 475 ---~~i~iwd-~~~~~--~~~~~~h~~~--v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~----~~~~~~~~~~ 538 (1058)
..|+.|. -++.. ...+...... ...+.. +.++++++..... ..+.+.++... .....+....
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 2367777 33322 2344444443 344554 5577777654433 34666676653 1222333333
Q ss_pred CcE-EEEEEccCCCEEEEEeccCCCCceEEEEeCCCCce---eeeeecccCcceeEEEEcCCCCEEEEEe-CC--CcEEE
Q 001535 539 HWC-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVG-ED--SQIKF 611 (1058)
Q Consensus 539 ~~i-~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d--g~i~v 611 (1058)
..+ ..+... +..+...+......+.|...++..... ...+..+.. .+....+...+.+|+... .+ ..|++
T Consensus 277 ~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 277 DGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp SS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEE
Confidence 333 333333 443333333334567788888877653 223443333 222233334455666543 33 46899
Q ss_pred EECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEE--EC--CCcEEEEEccCCc
Q 001535 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT--TA--DNGFKILANAIGL 662 (1058)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~--dg~i~iw~~~~~~ 662 (1058)
+++..+.....+..... +.|..+...+++..+... +. -+++..||+.++.
T Consensus 354 ~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99984555555544432 234555555555544332 22 2567778887763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.036 Score=54.74 Aligned_cols=208 Identities=15% Similarity=0.102 Sum_probs=130.1
Q ss_pred CeeEEEEecCCC-EEEEEe-CCc-EEEEECCCceEEEEecCCCCC--eeEEEEecCCCcEEEEEECC-----CCEEEEEc
Q 001535 833 AVPCIALSKNDS-YVMSAT-GGK-ISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTED-----STIHIYNV 902 (1058)
Q Consensus 833 ~v~~~~~s~dg~-~la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~lasg~~d-----g~v~iwd~ 902 (1058)
....++|+|... -++.+- -|+ ..++|..+.+...++....++ --.=.||| ||++|...-+| |.|-|||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEec
Confidence 344577887544 445554 455 778898877665554432221 12246999 99988765443 57999998
Q ss_pred cCc-eeeeEecccCCCeeEEEEcCCCCEEEEEeC------C------------CcEEEEECCCCceeceEEEecCCCCCC
Q 001535 903 RVD-EVKSKLKGHQKRITGLAFSTSLNILVSSGA------D------------AQLCVWSIDTWEKRKSVTIHIPAGKTP 963 (1058)
Q Consensus 903 ~~~-~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~------D------------g~i~iwd~~~~~~~~~~~~~~~~~~~~ 963 (1058)
..+ +.+.++..|.-.-..+.+.+||+.|+.+.. | -.+.+.|..+|+.+....+.....+
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~-- 225 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ-- 225 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh--
Confidence 865 567788888877889999999999997754 1 1355666666666554443311111
Q ss_pred CCceEEEEcCCCCEEEEEE------CCeEEEEECCCCeeeeeeccCCC----CCCCEEEEEEccCCCEEEEEeC-CCcEE
Q 001535 964 TGDTRVQFNADQVRMLVVH------ETQLAIYDASKMERIRQWTPQDA----LSAPISCAVYSCNSQLVFATFC-DGNIG 1032 (1058)
Q Consensus 964 ~~v~~l~~s~d~~~l~~~~------d~~v~v~d~~~~~~~~~~~~~~~----~~~~v~~l~~s~dg~~l~t~~~-dg~i~ 1032 (1058)
..+..+...+||..++.+. |.--.|=-...++.+..+...+. ...-|-+++...+..+++..+- .+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 6778899999998877752 22222222233333333322210 1334667888777777776664 45578
Q ss_pred EEeCCCCeEEE
Q 001535 1033 VFDADTLRLRC 1043 (1058)
Q Consensus 1033 iw~~~~~~~~~ 1043 (1058)
+||..+|..+.
T Consensus 306 i~da~tG~vv~ 316 (366)
T COG3490 306 IWDAATGAVVS 316 (366)
T ss_pred EEEcCCCcEEe
Confidence 99999998764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.19 Score=52.60 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=94.8
Q ss_pred EEEecCCCEEEEEeCCcEEEEECCCceE-EEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccC
Q 001535 837 IALSKNDSYVMSATGGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1058)
Q Consensus 837 ~~~s~dg~~la~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~ 915 (1058)
+....++..++++..|.|+.=. ..|+. ........+.+..+..++ ||++++++..-....-|+--...-...-+.-.
T Consensus 109 i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~ 186 (302)
T PF14870_consen 109 ITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSS 186 (302)
T ss_dssp EEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SS
T ss_pred EEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCcc
Confidence 3333444444444445443221 22221 222334456788899998 99999887654445567644221111122345
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEE-CCCCceeceEEEe-cCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCC
Q 001535 916 KRITGLAFSTSLNILVSSGADAQLCVWS-IDTWEKRKSVTIH-IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASK 993 (1058)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd-~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~ 993 (1058)
..|.+|.|+||+.+.+.+ ..|.|+.=+ ....+ ..... .+.....-.+..++|.+++...+++..+.+. ...+.
T Consensus 187 ~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~---~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~Dg 261 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE---TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDG 261 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE---EE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESST
T ss_pred ceehhceecCCCCEEEEe-CCcEEEEccCCCCcc---ccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCC
Confidence 789999999998876644 888888877 22211 11111 1111122457899999999999988887544 44455
Q ss_pred CeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001535 994 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1058)
Q Consensus 994 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw 1034 (1058)
|+.-..-.....-.+....+.|.++.+-++.| .+|.|.-|
T Consensus 262 GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 262 GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 55444443322225678999998776666655 58888766
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.084 Score=55.58 Aligned_cols=222 Identities=15% Similarity=0.109 Sum_probs=132.9
Q ss_pred EEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCe
Q 001535 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1058)
Q Consensus 350 v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 429 (1058)
-.|.|++..++.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. . -
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~-g 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-H-G 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-c-c
Confidence 34677777677777777899999988765421 11 233445554444555555553 3 3
Q ss_pred EEEEEecCCCcceeeeeec-c-cccCeEEEEeecCCCeeEEEEEeCC------------CcEEEEecCCCeeEEeecccC
Q 001535 430 IQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWELSGRKLFNFEGHEA 495 (1058)
Q Consensus 430 i~iwd~~~~~~~~~~~~l~-~-h~~~v~~l~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~h~~ 495 (1058)
+.+++.+++.....+.... + -....+++...|+|. +.+ +... |.|+..|..+..+..+..+-.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 6777776665423222221 1 224677888999998 333 3222 334444546677776666666
Q ss_pred CeeEEeecccCCceEEEEEee-CCeEEEEecCC-----CCc--eEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEE
Q 001535 496 PVYSICPHHKENIQFIFSTAI-DGKIKAWLYDT-----MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1058)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~-----~~~--~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~ 567 (1058)
.-+.++|+| |++.++.+.. .+.|.-|+++. ... ........+..-.++...+|.+-+++.. +.+.|.
T Consensus 164 ~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~ 238 (307)
T COG3386 164 IPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVV 238 (307)
T ss_pred ecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEE
Confidence 678899977 5555555544 47888887762 111 1122223345556777788887754432 234899
Q ss_pred EEeCCCCceeeeeecccCcceeEEEEc-CCCCEEEEEe
Q 001535 568 EWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1058)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 604 (1058)
.|+.. |+.+..+..... .+++++|. ++.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 99988 999988887754 56666664 4455555544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.33 Score=53.76 Aligned_cols=241 Identities=14% Similarity=0.119 Sum_probs=152.9
Q ss_pred ceEEEEECCCCCEEEEEeCC-CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCC
Q 001535 408 SVSRVAWSPDGNYVGVAFTK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1058)
Q Consensus 408 ~V~~l~~spdg~~las~~~d-g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~ 485 (1058)
....+...|++..+...... ..+.+-+.. ...... ....-...-..++.++++.. ..+....+..|.+.| ...+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 44567788888655544322 234444443 111111 11111134557788888886 455666678999999 5555
Q ss_pred eeEEeecccCCeeEEeecccCCceEEEEEee---CCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCC
Q 001535 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1058)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~ 562 (1058)
......--. ....+++.+ +++.+..+.. ++++.+.|..+............+ ..++++|+|..++.... .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 554443222 456677755 4455555544 688888888777776664333334 89999999998877753 5
Q ss_pred CceEEEEeCCCCceeeeee----cccCcceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCCCCceE
Q 001535 563 DSFLVEWNESEGTIKRTYA----GFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1058)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~v 635 (1058)
++.|.+.|..+....+ -. .........+.+++++.++++.... +.+...|..++.........+.. ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 8899999977665553 11 0111134458899999987776543 58999999888877663222222 34678
Q ss_pred EeeCCCCEEEEEECC-CcEEEEEccCC
Q 001535 636 RFSKEGNLLAVTTAD-NGFKILANAIG 661 (1058)
Q Consensus 636 ~~s~~~~~l~~~~~d-g~i~iw~~~~~ 661 (1058)
..+|+|..+.+.... +.+.+.|..+.
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 999999998887544 78888887664
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.068 Score=56.23 Aligned_cols=204 Identities=14% Similarity=0.095 Sum_probs=119.5
Q ss_pred EEEecCCCEEEEEe--CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEec--
Q 001535 837 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-- 912 (1058)
Q Consensus 837 ~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~-- 912 (1058)
..|.++...|.... .+.|.-|+..+++.. .+..+ +.+.++..-. .+..|+++. .-+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccc
Confidence 45667777666665 678999998766432 23222 2234443333 344444442 336777776665433322
Q ss_pred --cc-CCCeeEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCceeceEEEecCCCCCCCCceEEEEcCCCCEEE
Q 001535 913 --GH-QKRITGLAFSTSLNILVSSGA-----D----AQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979 (1058)
Q Consensus 913 --~h-~~~V~~l~~s~d~~~l~s~s~-----D----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 979 (1058)
+. ...-+.+...|+|.+.++... . ..-.+|.++ .+..+....-.. ...+.++||||++.|.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~------~~~NGla~SpDg~tly 178 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL------TIPNGLAFSPDGKTLY 178 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE------EecCceEECCCCCEEE
Confidence 11 134567888999988876544 1 112455555 344333322211 3457899999999888
Q ss_pred EEE--CCeEEEEECCC--Ceeeee--eccCCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCeEEEEEcCccccC
Q 001535 980 VVH--ETQLAIYDASK--MERIRQ--WTPQDALSAPISCAVYSCNSQLVFATFCDG-NIGVFDADTLRLRCYIAPSTYLS 1052 (1058)
Q Consensus 980 ~~~--d~~v~v~d~~~--~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~~~ 1052 (1058)
.+. .+.|.-|++.. +..-.. ........+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.-....|
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 864 47777777652 211111 111111256777888889999886665554 89999998 99988887654333
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=72.01 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=78.5
Q ss_pred CCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCceec
Q 001535 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 951 (1058)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~ 951 (1058)
..+.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 88899999999999999988 777888887888888 99999999999999999999999999988666
Q ss_pred eEEEecCCCCCCCCceEEEEcC
Q 001535 952 SVTIHIPAGKTPTGDTRVQFNA 973 (1058)
Q Consensus 952 ~~~~~~~~~~~~~~v~~l~~s~ 973 (1058)
..... ....|..+.|++
T Consensus 99 ~~~~s-----~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS-----VETDISKGIWDR 115 (665)
T ss_pred ccccc-----cccchheeeccc
Confidence 53111 116677888863
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.089 Score=57.40 Aligned_cols=83 Identities=12% Similarity=0.212 Sum_probs=60.2
Q ss_pred CcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCC-----------------CEE-
Q 001535 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-----------------NHF- 600 (1058)
Q Consensus 539 ~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~l- 600 (1058)
..+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+ .+|
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 357889999998877764 3688999999999999999998776443332222111 122
Q ss_pred EEEeCCCcEEEEECCCCceeeEecc
Q 001535 601 LAVGEDSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 601 ~~~~~dg~i~vwd~~~~~~~~~~~~ 625 (1058)
+-+-.-|.|.||++..|..+..+..
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEe
Confidence 3355789999999999998887765
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.018 Score=62.33 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=105.5
Q ss_pred CcEEEEECCCceEEEEecCCC-CCeeEEE---EecC---CCcEEEEEEC----------CCCEEEEEccCc-----ee--
Q 001535 852 GKISLFNMMTFKVMTTFMSPP-PASTFLA---FHPQ---DNNIIAIGTE----------DSTIHIYNVRVD-----EV-- 907 (1058)
Q Consensus 852 g~i~vwd~~~~~~~~~~~~~~-~~i~~l~---~s~~---~~~~lasg~~----------dg~v~iwd~~~~-----~~-- 907 (1058)
..|++.|..+.+.+.++.-.. ..+.+++ +..+ ...++++|+. .|.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357888888877776655322 2344443 3321 1578887763 288999999884 22
Q ss_pred eeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeceEEEecCCCCCCCCceEEEEcCCCCEEEEEE-CCe
Q 001535 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE-KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQ 985 (1058)
Q Consensus 908 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d~~ 985 (1058)
+... ...++|++++-- ++. |+.+. .+.|.+|++...+ ........ ..+........+.++++|. .+.
T Consensus 82 i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-------~~~~i~sl~~~~~~I~vgD~~~s 150 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-------SPFYITSLSVFKNYILVGDAMKS 150 (321)
T ss_dssp EEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEETTEEEEEESSSS
T ss_pred EEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec-------ceEEEEEEeccccEEEEEEcccC
Confidence 2222 356889999876 344 55444 4789999999887 44433333 2233444444466888874 566
Q ss_pred EEEEECCC-CeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001535 986 LAIYDASK-MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 986 v~v~d~~~-~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
+.++..+. ...+..+.. +.....++++.|-.|++.++++..+|.+.++...
T Consensus 151 v~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 77665443 222333322 2225668899998777899999999999999886
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.32 Score=49.00 Aligned_cols=189 Identities=11% Similarity=0.128 Sum_probs=121.5
Q ss_pred CCCeeEEEEecCCCEEEEEe-CC--cEEEEECCCceEEEEecCCCC-CeeEEEEecCCCcEEEEEECCCCEEEEEccCce
Q 001535 831 EEAVPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1058)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~ 906 (1058)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++.. ++++....-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 34456788888888877776 44 599999999988766553221 12234444 45666667789999999999999
Q ss_pred eeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCe
Q 001535 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 985 (1058)
Q Consensus 907 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~ 985 (1058)
.+.++.- .+.-..|+ .||+.|+.......+.++|..+.+....+.+.. .+.....++.+-+- +|...|=. ....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 8888863 45667887 567777777777789999999988877776653 22222566777775 45433333 5777
Q ss_pred EEEEECCCCeeeeeeccC---------C---CCCCCEEEEEEccCCCEEEEEe
Q 001535 986 LAIYDASKMERIRQWTPQ---------D---ALSAPISCAVYSCNSQLVFATF 1026 (1058)
Q Consensus 986 v~v~d~~~~~~~~~~~~~---------~---~~~~~v~~l~~s~dg~~l~t~~ 1026 (1058)
|...|..+|+....+... . ....-...+|+.|....+++.+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 888899999887655321 0 0134578999988777666655
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.26 Score=52.07 Aligned_cols=228 Identities=15% Similarity=0.099 Sum_probs=125.2
Q ss_pred CCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 001535 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434 (1058)
Q Consensus 355 ~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd 434 (1058)
.++ .|+.|+.+| +.+++........ ...+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~--------------------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPT--------------------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccce--------------------eEeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 455 478888888 8899883222111 011233499999999877777664 59999999
Q ss_pred ecCCCcceeeee-----------ecccccCeEEEE--eecCCCeeEEEEEeCCCcEEEEe-cCC-----CeeEEeecccC
Q 001535 435 YAGSNDLRQHSQ-----------IDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWE-LSG-----RKLFNFEGHEA 495 (1058)
Q Consensus 435 ~~~~~~~~~~~~-----------l~~h~~~v~~l~--~s~d~~~~~l~s~~~d~~i~iwd-~~~-----~~~~~~~~h~~ 495 (1058)
+..-........ -......+...+ =...+.. .++.+ ..+.|.+|. ... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cCC
Confidence 876443321100 011223344444 1123332 34443 355888887 332 3444444 347
Q ss_pred CeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCC------------CcEEEEEEccCCCEEEEEeccCCCC
Q 001535 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------------HWCTTMLYSADGSRLFSCGTSKDGD 563 (1058)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~------------~~i~~i~~s~~~~~l~~~~~~~~~~ 563 (1058)
.+.+++|.. +.++.|..+ ...+.|+.++.....+.... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788888862 456666644 46778888655543332211 12333333 345555543 2
Q ss_pred ceEEEEeCCCCceee--eeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccC
Q 001535 564 SFLVEWNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1058)
Q Consensus 564 ~~i~~wd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 626 (1058)
..-...| ..|+..+ .+.-. .....+++. ..+|++.+.+ .|.||++.++++++.+...
T Consensus 208 ~~g~fv~-~~G~~~r~~~i~W~--~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVN-KNGEPSRKSTIQWS--SAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEc-CCCCcCcccEEEcC--CchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 2222233 3444333 12111 123344443 4577777665 5999999999999988754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0016 Score=70.96 Aligned_cols=95 Identities=19% Similarity=0.382 Sum_probs=73.2
Q ss_pred CCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceE-EEEECCCCCEEE
Q 001535 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVG 422 (1058)
Q Consensus 344 ~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la 422 (1058)
...|.-+.|+|.-. ++|++..+|.|.+..++ .+.+ |+ +.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEE
Confidence 44788899999988 89999999999999887 3333 32 222455555 999999999999
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeec
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~ 461 (1058)
+|-.||+|++-|++++..+... ...-...|.++-|.+
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 9999999999999998766532 223455677777763
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.029 Score=65.75 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=99.0
Q ss_pred CCcEEEEE-ECCCCEEEEEccCceeeeEecccCCC-eeEEEEcCCC-------CEEEEEeCCCcEEEEECCCCceeceEE
Q 001535 884 DNNIIAIG-TEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSL-------NILVSSGADAQLCVWSIDTWEKRKSVT 954 (1058)
Q Consensus 884 ~~~~lasg-~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~-------~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 954 (1058)
+..+|+.. .....|+-.|+..|+.+..+..|... |..+ .|+. ..-+.|-.+..+..||.+-.. .+...
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC-Cceee
Confidence 44554443 35678999999999999999988754 5444 4432 233456667789999987532 11111
Q ss_pred EecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001535 955 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1058)
Q Consensus 955 ~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw 1034 (1058)
.+...-......++++-+.+|..++.+.+|.|++||- .|..-....+ +...+|..|..+.||++|++.+ +..+.++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 1111112226678888888998877789999999994 3333333222 2278999999999999998777 7778888
Q ss_pred eC
Q 001535 1035 DA 1036 (1058)
Q Consensus 1035 ~~ 1036 (1058)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 76
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.14 Score=55.44 Aligned_cols=217 Identities=15% Similarity=0.131 Sum_probs=119.1
Q ss_pred ceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCC----CCEEEEEeC----------CCeEEE
Q 001535 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGVAFT----------KHLIQL 432 (1058)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~----------dg~i~i 432 (1058)
+.|+|.|..+.+.+.+..+. -..+-..+..+.+..+ ..+|++|+. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 35788887777665433221 0112223344455443 568887753 288999
Q ss_pred EEecCC----CcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeec--ccCCeeEEeeccc
Q 001535 433 YSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHK 505 (1058)
Q Consensus 433 wd~~~~----~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~--h~~~v~~~~~~~~ 505 (1058)
+++... ..++.... ....++|++++-- ++. ++.+. .+.|.+|+ ...+.+..... ....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999884 23333222 2457889999876 343 33333 58899999 44442322222 23356666542
Q ss_pred CCceEEEEEeeCCeEEEEecCCCCc-eE--EeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC-------C-
Q 001535 506 ENIQFIFSTAIDGKIKAWLYDTMGS-RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-------G- 574 (1058)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~-~~--~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-------~- 574 (1058)
+++++.|...+.+.++.++.... .. ........++++.+-++++.++.+- .++.+.++.... +
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-SS-SSTTTTT
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEECCCCccccccc
Confidence 34899999888888886655333 22 2233455789999987777665554 588888877652 1
Q ss_pred -ceeeeeecccCcceeEE---EEcC--CC------CEEEEEeCCCcEEEE
Q 001535 575 -TIKRTYAGFRKKSNGVV---QFDT--TQ------NHFLAVGEDSQIKFW 612 (1058)
Q Consensus 575 -~~~~~~~~~~~~~i~~~---~~~~--~~------~~l~~~~~dg~i~vw 612 (1058)
++.....-|-+..++++ ++.| .+ ..++.++.+|.|.+.
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 23333334444456555 3333 12 137777778877743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=43.78 Aligned_cols=39 Identities=33% Similarity=0.567 Sum_probs=34.5
Q ss_pred ceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001535 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1058)
Q Consensus 905 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd 943 (1058)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.29 Score=52.48 Aligned_cols=189 Identities=16% Similarity=0.176 Sum_probs=94.2
Q ss_pred EEEecCCCEEEEEe---C----CcEEEEECCCceEEEEecCCCC---CeeEEEEecCCCcEEEEEE--------------
Q 001535 837 IALSKNDSYVMSAT---G----GKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGT-------------- 892 (1058)
Q Consensus 837 ~~~s~dg~~la~~~---d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~lasg~-------------- 892 (1058)
+..-|+|+.++++- + |.+.++|-++.+.......... --..+-|.| ..+.+++..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChh
Confidence 33447898888773 2 4499999999888877764322 245677778 666776654
Q ss_pred ------CCCCEEEEEccCceeeeEecccCC--CeeEEEEcCC--CCE-EEEEeCCCcEEEE-ECCCCceeceEEEecCCC
Q 001535 893 ------EDSTIHIYNVRVDEVKSKLKGHQK--RITGLAFSTS--LNI-LVSSGADAQLCVW-SIDTWEKRKSVTIHIPAG 960 (1058)
Q Consensus 893 ------~dg~v~iwd~~~~~~~~~~~~h~~--~V~~l~~s~d--~~~-l~s~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~ 960 (1058)
...++.+||+.+.+.++++.--.. ....+.|..+ ..+ ++.+....+|..| .-+.++......+.++..
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 134799999999999998864432 2446666543 443 3333344445444 334554433333333221
Q ss_pred C---------------CCCCceEEEEcCCCCEEEEE--ECCeEEEEECCCCee---eeeeccC-------------CCCC
Q 001535 961 K---------------TPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMER---IRQWTPQ-------------DALS 1007 (1058)
Q Consensus 961 ~---------------~~~~v~~l~~s~d~~~l~~~--~d~~v~v~d~~~~~~---~~~~~~~-------------~~~~ 1007 (1058)
. .+.-++.+..|.|.++|.++ -.|.++.||+..-.. +.++... ....
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 1 12567999999999999997 599999999986432 2222211 0013
Q ss_pred CCEEEEEEccCCCEEEEEe
Q 001535 1008 APISCAVYSCNSQLVFATF 1026 (1058)
Q Consensus 1008 ~~v~~l~~s~dg~~l~t~~ 1026 (1058)
+....+..|-||+.|...+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 3457899999999988765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.31 Score=50.24 Aligned_cols=145 Identities=13% Similarity=0.096 Sum_probs=90.7
Q ss_pred CCeeEEEEecCCCEEEEEe--CCc--EEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEE-ccCce
Q 001535 832 EAVPCIALSKNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN-VRVDE 906 (1058)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd-~~~~~ 906 (1058)
..+.+.++|+||+.+|... ++. ++++.. +....... ....++...|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887766 544 555544 33323322 233788899999 788887777777777774 33332
Q ss_pred ee-eEec--ccCCCeeEEEEcCCCCEEEEEe---CCCcEEEEECCCCcee----ceEEEecCCCCCCCCceEEEEcCCCC
Q 001535 907 VK-SKLK--GHQKRITGLAFSTSLNILVSSG---ADAQLCVWSIDTWEKR----KSVTIHIPAGKTPTGDTRVQFNADQV 976 (1058)
Q Consensus 907 ~~-~~~~--~h~~~V~~l~~s~d~~~l~s~s---~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~l~~s~d~~ 976 (1058)
.. ..+. .-.+.|+.+.+||||..++... .++.|.+=-+.....- ........... ...+..+.|.+++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDST 178 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeecCCCE
Confidence 21 1111 1112899999999999888765 3567777765422111 11111111111 16789999999999
Q ss_pred EEEEE
Q 001535 977 RMLVV 981 (1058)
Q Consensus 977 ~l~~~ 981 (1058)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88885
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.077 Score=54.72 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=91.0
Q ss_pred CeeEEEEecCCCcEEEEEE-CCC--CEEEEEccCceeeeE-ecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEE-CCCCc
Q 001535 874 ASTFLAFHPQDNNIIAIGT-EDS--TIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQLCVWS-IDTWE 948 (1058)
Q Consensus 874 ~i~~l~~s~~~~~~lasg~-~dg--~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd-~~~~~ 948 (1058)
.+.+.++|+ +++.+|... .++ .++++. .+..... +.+ ..++...|++++...+....+...+++. ..+++
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 777666554 233 455554 3332222 233 3788899999988887777777777774 33333
Q ss_pred eeceEEEecCCCCCCCCceEEEEcCCCCEEEEEE----CCeEEEEECC---CCeee---eeeccCCCCCCCEEEEEEccC
Q 001535 949 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDAS---KMERI---RQWTPQDALSAPISCAVYSCN 1018 (1058)
Q Consensus 949 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~----d~~v~v~d~~---~~~~~---~~~~~~~~~~~~v~~l~~s~d 1018 (1058)
. ........... ..|..+++||||..++... ++.|.+--+. .+... ............+..++|.++
T Consensus 100 ~-~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 G-EPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred c-eeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 2 22223322211 2799999999999999853 6777766543 22011 111111111468899999999
Q ss_pred CCEEEEEeCCCc
Q 001535 1019 SQLVFATFCDGN 1030 (1058)
Q Consensus 1019 g~~l~t~~~dg~ 1030 (1058)
+.+++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 998887664443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.4 Score=52.49 Aligned_cols=83 Identities=10% Similarity=0.161 Sum_probs=55.9
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCC-eeEEEEecCC----------------Cc-EEEE
Q 001535 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA-STFLAFHPQD----------------NN-IIAI 890 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~----------------~~-~las 890 (1058)
....+.+++.+|++++.|+.+ -|.|.++|+.++..++..+|-.+. +.-+...... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 456688999999999888876 489999999999888777764432 1111111101 11 2334
Q ss_pred EECCCCEEEEEccCceeeeEec
Q 001535 891 GTEDSTIHIYNVRVDEVKSKLK 912 (1058)
Q Consensus 891 g~~dg~v~iwd~~~~~~~~~~~ 912 (1058)
+-.-|.|.||.++.|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5567889999998887766554
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=1.4 Score=47.73 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=91.5
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCCEEE-EEccCceee-eEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001535 872 PPASTFLAFHPQDNNIIAIGTEDSTIHI-YNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1058)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~dg~v~i-wd~~~~~~~-~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~ 949 (1058)
...+.++.+.| ++.+++++. .|.+.. ++ ..++.- ..-..-...++++.+.++++.++. +..|.+++=..+.|+.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45688899999 777776554 555443 22 122211 112233467889999999887665 4567664323444432
Q ss_pred eceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001535 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1029 (1058)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg 1029 (1058)
-... ..+.......+.++.+.+++..++++.+|.+.. ....++.-........-......+.|..+++.+++| ..|
T Consensus 248 W~~~--~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G 323 (334)
T PRK13684 248 WSKP--IIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRG 323 (334)
T ss_pred cccc--cCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCc
Confidence 1111 111111114567899999999888888876653 445555444332211113467888888777766654 589
Q ss_pred cEEEEeC
Q 001535 1030 NIGVFDA 1036 (1058)
Q Consensus 1030 ~i~iw~~ 1036 (1058)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8888764
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.039 Score=59.27 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=98.9
Q ss_pred EEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCC--EE-----EEEeCCCcEEEEECCCCceeceEEEecCC
Q 001535 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN--IL-----VSSGADAQLCVWSIDTWEKRKSVTIHIPA 959 (1058)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~--~l-----~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 959 (1058)
+|.++.....++-.|++.|+.+.++.-|.. |+-+.+.|+.+ .| +.|=.|..|.-||.+-...-.....+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 444555567789999999999999998866 88888888754 22 22456778999998743221111111111
Q ss_pred CCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001535 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 960 ~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
-.......+++-..+|..++.+.+|.|++||- .+.......+.- ..+|..+..+.||++++..+ +..+.+-++
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL--G~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL--GDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc--CCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 11225566777777887777778999999997 555444443333 78999999999999988766 666666655
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0055 Score=41.22 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=33.8
Q ss_pred ceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEE
Q 001535 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1058)
Q Consensus 862 ~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd 901 (1058)
+++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345667778888999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=3.1 Score=50.05 Aligned_cols=242 Identities=8% Similarity=0.009 Sum_probs=117.1
Q ss_pred cceEEEEECCCCCEEEEEeC-----CCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCC-----Cc
Q 001535 407 ISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (1058)
Q Consensus 407 ~~V~~l~~spdg~~las~~~-----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~ 476 (1058)
-.+..+.|||||++||.+.. ...|++-|+.+|+.+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 35677899999999987633 23588889988864321 1222 1 156999999985 34443322 35
Q ss_pred EEEEe-cCC--CeeEEeecccCCeeEEeecccCCceEEEEEee---CCeEEEEecCC--CCceEEeeCCCCcEEEEEEcc
Q 001535 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (1058)
Q Consensus 477 i~iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~--~~~~~~~~~~~~~i~~i~~s~ 548 (1058)
|+.++ .++ +-...+........ +....+.++++++..+. ++.+.+++.+. ................+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 66777 555 22333433333333 22222335565554443 34688888533 222222322323222222 2
Q ss_pred CCCEEEEEeccCCCCceEEEEeCCC-Cceeeeeecc-cCcceeEEEEcCCCCEEEEEeCCCcEEE--EECCCCceeeEec
Q 001535 549 DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKF--WDMDNVNILTSTD 624 (1058)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~v--wd~~~~~~~~~~~ 624 (1058)
.+..+...+..+.....|...++.. ++. ..+..+ ....+..+.+. .+..+++...+|.-++ ++..++ .+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEec
Confidence 2344444332222344555556552 222 233333 33356667776 2334444555665444 454333 333333
Q ss_pred cCCCCCCCceEEee--CCCC-EEEEEEC---CCcEEEEEccCC
Q 001535 625 AEGGLPNLPRLRFS--KEGN-LLAVTTA---DNGFKILANAIG 661 (1058)
Q Consensus 625 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 661 (1058)
.... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2111 112223344 3333 4433332 356777787664
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.62 Score=50.11 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=72.8
Q ss_pred ceEEEEEe-eCCeEEEEecCCCCce----EEeeC---CC----CcEEEEEEccCCCEEEEEecc--CCCCceEEEEeCCC
Q 001535 508 IQFIFSTA-IDGKIKAWLYDTMGSR----VDYDA---PG----HWCTTMLYSADGSRLFSCGTS--KDGDSFLVEWNESE 573 (1058)
Q Consensus 508 ~~~l~s~~-~dg~i~~wd~~~~~~~----~~~~~---~~----~~i~~i~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~ 573 (1058)
.++|+..+ ..+.|.+.|+.+.... ..+.. .. .....+-.-|+|+.++++-.+ +++.+.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 35666655 6788999998743221 12221 00 122334445889888876543 34567889999988
Q ss_pred CceeeeeecccCc--ceeEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCceeeEeccCCCCCC
Q 001535 574 GTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVG--------------------EDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1058)
Q Consensus 574 ~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~--------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~ 631 (1058)
.+........... .-..+.+.|..+.+++.. ...++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 8888777654331 233467788888888754 135799999999999999987543222
Q ss_pred CceEEee--CCCCEEEEEE-CCCcEEEEE
Q 001535 632 LPRLRFS--KEGNLLAVTT-ADNGFKILA 657 (1058)
Q Consensus 632 v~~v~~s--~~~~~l~~~~-~dg~i~iw~ 657 (1058)
..-+.|. |+..+-++++ -..+|..|-
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEE
Confidence 3455554 4444433333 344555443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.43 E-value=1.8 Score=46.81 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=35.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceee-EeccCCCC-CCCceEEeeCCCCEEEEEECCCcEE
Q 001535 597 QNHFLAVGEDSQIKFWDMDNVNILT-STDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (1058)
Q Consensus 597 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~ 654 (1058)
+.++++.-..+.|....+..+..+. ....-... ..+..+++.|||.+.++...+|.|+
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4455555556788888876443222 22211222 2688999999999998888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.3 Score=44.86 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=115.9
Q ss_pred CcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeee-eccCCCCCCCeeEEEEec
Q 001535 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSK 841 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~ 841 (1058)
.......+.|..+|..+-+.|.-|.-.+ +.+++.+|+.... .+. ...--..+++-.
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~---~~~FgEGit~~~ 99 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLP---PRYFGEGITILG 99 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-T---TT--EEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECC---ccccceeEEEEC
Confidence 3445678888888887777777664333 2345566654432 222 233344555555
Q ss_pred CCCEEEEEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccC-----C
Q 001535 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-----K 916 (1058)
Q Consensus 842 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~-----~ 916 (1058)
|.-+..+--++...+||..+.+.+.++.- .+.=..++. |++.|........++++|..+.+...++.-.. .
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 43334444489999999999999988864 345556663 56667767667789999988876666554321 2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCC-------C--CCCCceEEEEcCCCCEEEEEE
Q 001535 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG-------K--TPTGDTRVQFNADQVRMLVVH 982 (1058)
Q Consensus 917 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-------~--~~~~v~~l~~s~d~~~l~~~~ 982 (1058)
.++-|.|- +|...|=.-....|..-|..+|+....+.+..... . ...-.+.+++.|.+..+.+..
T Consensus 176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 45667776 67777766667778889999999887776542211 0 124568999988776666543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.27 Score=57.20 Aligned_cols=233 Identities=11% Similarity=0.026 Sum_probs=120.7
Q ss_pred CCCEEEEEeCC------CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCC------CcEEEEe-cC
Q 001535 417 DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LS 483 (1058)
Q Consensus 417 dg~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd-~~ 483 (1058)
.+..++.|+.+ ..+..||..++.... ...+. +...-.+++... |. +.++||.| .++..|| ..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566667666 357888888764322 11222 222344455543 44 77888888 3577888 44
Q ss_pred CCee--EEeecccCCeeEEeecccCCceEEEEEeeCCe-----EEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEE
Q 001535 484 GRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1058)
Q Consensus 484 ~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 556 (1058)
++-. ..+...........+ +|.+.++||.||. +-.||..+.+-...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 4422 122222222222222 6688899999864 6667766543332222222111222223467777777
Q ss_pred eccCCCC--ceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeeEeccCCCC
Q 001535 557 GTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGL 629 (1058)
Q Consensus 557 ~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~ 629 (1058)
|.++..+ ..+..||..+.+-...-.-.....-..++ .-++...++||.|+ +|..||..+.+....-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 7544332 57888998876543322221111111122 23455666677665 3778888877665543222222
Q ss_pred CCCceEEeeCCCCEEEEEECCCc-----EEEEEccCC
Q 001535 630 PNLPRLRFSKEGNLLAVTTADNG-----FKILANAIG 661 (1058)
Q Consensus 630 ~~v~~v~~s~~~~~l~~~~~dg~-----i~iw~~~~~ 661 (1058)
..+..+. -++...++|+.||. |..||..++
T Consensus 514 s~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 2222222 26677888887763 555655444
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.11 Score=56.14 Aligned_cols=143 Identities=8% Similarity=0.071 Sum_probs=96.5
Q ss_pred CeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccCCceEE-----EEEeeCCeEEEEecCCCCc-eEEe-e
Q 001535 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-----FSTAIDGKIKAWLYDTMGS-RVDY-D 535 (1058)
Q Consensus 464 ~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~~wd~~~~~~-~~~~-~ 535 (1058)
..+++.++.....++--| ..|+.+..+.-+.. |.-+.+.+...+..+ +.|-.|..|.-||++.... .+.. .
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 344667777777888889 99999999988777 666666555443332 4566788899999986554 2211 1
Q ss_pred C----CCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEE
Q 001535 536 A----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1058)
Q Consensus 536 ~----~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 611 (1058)
. ......|.+-..+| ++++++ .+|-|++||....+....+++... .|..+..+.+|++|++.+.. .+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS----~~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~t-yLlL 496 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGS----LKGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCKT-YLLL 496 (644)
T ss_pred ccccccccccceeeecCCc-eEEEee----cCCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEeccc-EEEE
Confidence 1 12245666666666 666666 388899999744344445666555 88899999999999887754 4555
Q ss_pred EEC
Q 001535 612 WDM 614 (1058)
Q Consensus 612 wd~ 614 (1058)
.+.
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.27 Score=41.87 Aligned_cols=104 Identities=8% Similarity=0.071 Sum_probs=62.1
Q ss_pred eeEEeeccc-CC-ceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC
Q 001535 497 VYSICPHHK-EN-IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1058)
Q Consensus 497 v~~~~~~~~-~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1058)
|+++++..- ++ .+.|++|+.|..||+|+-+ ....++. ....|.+++-...++ ++.+- .+|+|-+|+- .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~-F~Y~l----~NGTVGvY~~--~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGR-FAYAL----ANGTVGVYDR--S 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCE-EEEEe----cCCEEEEEeC--c
Confidence 566665432 22 2579999999999999532 3333333 455677887777755 44444 3889999974 2
Q ss_pred ceeeeeecccCcceeEEEEcCC--C-CEEEEEeCCCcEEE
Q 001535 575 TIKRTYAGFRKKSNGVVQFDTT--Q-NHFLAVGEDSQIKF 611 (1058)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~--~-~~l~~~~~dg~i~v 611 (1058)
..+...+..+. .+....+..+ | ..|++|-.+|.|-+
T Consensus 72 ~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 33333333332 3333333333 2 46888888887743
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.11 Score=61.25 Aligned_cols=144 Identities=11% Similarity=0.102 Sum_probs=97.0
Q ss_pred CeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCC-eeEEeeccc---CCceEEEEEeeCCeEEEEecCCCCceEEe-e--
Q 001535 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D-- 535 (1058)
Q Consensus 464 ~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~-- 535 (1058)
+.++|........|+-.| ..|+.+..+..|... |..++-... -+..-.+.|-.++.+..||++..+..... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 333444445667899999 999999999887754 676653211 01234567788889999999876532221 1
Q ss_pred --CCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001535 536 --APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1058)
Q Consensus 536 --~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd 613 (1058)
......+|++-+.+| +||+|+ .+|.|++||-...+....+++... +|..+..+.||+++++.+.. .|.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs----~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGS----NKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCKT-YLLLID 645 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEe----CCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeecc-eEEEEE
Confidence 123367788888777 555565 489999999544343444555444 89999999999999888765 566666
Q ss_pred C
Q 001535 614 M 614 (1058)
Q Consensus 614 ~ 614 (1058)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 4
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=4.3 Score=48.83 Aligned_cols=243 Identities=9% Similarity=0.033 Sum_probs=118.8
Q ss_pred CcEEEEEeecCCCeEEEEEecc----ceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCE
Q 001535 345 STVISMDFHPSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1058)
Q Consensus 345 ~~V~~v~~sp~g~~lla~gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1058)
-.+..+.+||||++++.+.+.+ ..|++-|+.+|+.+.. .+.+ .-..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCE
Confidence 3577889999999544443222 3788999988764321 0111 1145999999998
Q ss_pred EEEEeCC------CeEEEEEecCCCc-ceeeeeecccccCeE-EEEeecCCCeeEEEEEe-CCCcEEEEe--c-CCCeeE
Q 001535 421 VGVAFTK------HLIQLYSYAGSND-LRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCG-DDKLIKVWE--L-SGRKLF 488 (1058)
Q Consensus 421 las~~~d------g~i~iwd~~~~~~-~~~~~~l~~h~~~v~-~l~~s~d~~~~~l~s~~-~d~~i~iwd--~-~~~~~~ 488 (1058)
|+....+ ..|..+++.++.. ... .+........ .+..+.|++.+++.+.+ .++.+.+++ . ++....
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence 8766542 3577788887721 111 1222223333 33344478753322222 235788888 2 344222
Q ss_pred EeecccCCeeEEeecccCCceEEEEEeeC-C--eEEEEecCCCCceEEeeCC--CCcEEEEEEccCCCEEEEEeccCCCC
Q 001535 489 NFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGD 563 (1058)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~~wd~~~~~~~~~~~~~--~~~i~~i~~s~~~~~l~~~~~~~~~~ 563 (1058)
.+..-.+....+. +. ++.+++....+ . .|...++........+..+ ...+..+.+. ++.|+.... .++.
T Consensus 264 ~~~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~ 337 (686)
T PRK10115 264 FLPRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGL 337 (686)
T ss_pred EEECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCE
Confidence 2221222222222 22 22333333222 2 3333344422222223333 3367777776 445554443 1234
Q ss_pred ceEEEEeCCCCceeeeee-cccCcceeEEEEc--CCCC-EEEEEe---CCCcEEEEECCCCc
Q 001535 564 SFLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (1058)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~-~l~~~~---~dg~i~vwd~~~~~ 618 (1058)
..+.+++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 456666655433 33333 1111 22223344 3444 333333 45778899988765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.14 Score=43.51 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=65.1
Q ss_pred EEEEEe---ecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEE
Q 001535 347 VISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1058)
Q Consensus 347 V~~v~~---sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1058)
|+++++ ..||..-|++||.|..|++|+-. +.+.+ + .-++.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E-------------------i-~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE-------------------I-TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE-------------------E-ecccceEEEEEcCC-CEEEE
Confidence 455554 45676779999999999999843 22221 1 13567888877766 57889
Q ss_pred EeCCCeEEEEEecCCCcceeeeeecccccCeEEEEee---cCCCeeEEEEEeCCCcEE
Q 001535 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA---YPNKLLCVVTCGDDKLIK 478 (1058)
Q Consensus 424 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s---~d~~~~~l~s~~~d~~i~ 478 (1058)
+..+|+|-+|+-... .. ..+. +..+.++++. .||.. -|++|=.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R-lW----RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR-LW----RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce-ee----eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999976431 11 2222 2235555543 34444 578887777664
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.3 Score=42.91 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=39.9
Q ss_pred EEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEec
Q 001535 836 CIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1058)
Q Consensus 836 ~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 882 (1058)
.+++..+|.+.++.- .++|...|..+|+.+.++.-....|+|++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 456667888777665 78999999999999999999999999999954
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.07 E-value=3.1 Score=45.87 Aligned_cols=281 Identities=10% Similarity=0.120 Sum_probs=144.8
Q ss_pred ecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEEC---C--CCCEEEEEeCC
Q 001535 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS---P--DGNYVGVAFTK 427 (1058)
Q Consensus 353 sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---p--dg~~las~~~d 427 (1058)
+++++-.+++||.+|.++||+...+..... .+ + .-..-..+|..++.- + +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l-l-------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL-L-------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-cE-E-------------EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 345555789999999999999855432211 00 0 011124567766643 2 2345555 456
Q ss_pred CeEEEEEecCCCcc------eeeeeeccccc--CeEEEEeecC----CCeeEEEEEeCCCcEEEEecCCCeeEEeecccC
Q 001535 428 HLIQLYSYAGSNDL------RQHSQIDAHVG--AVNDLAFAYP----NKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA 495 (1058)
Q Consensus 428 g~i~iwd~~~~~~~------~~~~~l~~h~~--~v~~l~~s~d----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~ 495 (1058)
..+.||.+...... ..+..+..|.- ....+..-|- |+. ++..=+-||.+.+++.+......+-...-
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 67888887422111 11112223432 2233333222 223 78888999999999955544333322222
Q ss_pred CeeEEeecccCCceEEEEEeeCCeEEEEecCCCC-----------------------ceEEeeCCCC--cEEEEEEccCC
Q 001535 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------SRVDYDAPGH--WCTTMLYSADG 550 (1058)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-----------------------~~~~~~~~~~--~i~~i~~s~~~ 550 (1058)
-...+++.+.. +.+++++.+..+..|....-. ..+++..... .+..+.++...
T Consensus 176 lPgPl~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 176 LPGPLCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCcCeEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 22334454443 478888888888888652100 0112221111 23334444344
Q ss_pred CEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcC----CC---CEEEEEeCCCcEEEEECCCCceeeEe
Q 001535 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNILTST 623 (1058)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~----~~---~~l~~~~~dg~i~vwd~~~~~~~~~~ 623 (1058)
..+++.+ ...+.+.+. +|.+....+-.-. +.....+.. .+ ..+++++.++++.||.- .+++...
T Consensus 254 ~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA 324 (418)
T PF14727_consen 254 SDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSA 324 (418)
T ss_pred ceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEec
Confidence 4455444 667777765 4544433332211 222222221 22 24888999999999964 3333333
Q ss_pred ccCCCCCCCceEEeeCCCCEEEEEECCCcEEEEEccCC
Q 001535 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 624 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
......-.+....|..-...+++-+.+|.+.+-=+.+.
T Consensus 325 ~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 325 QLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 33221111122222333557888889999998777665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.76 Score=46.38 Aligned_cols=172 Identities=11% Similarity=0.159 Sum_probs=109.2
Q ss_pred cCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEec--ccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001535 869 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 869 ~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~ 946 (1058)
.+-...+.++.|+| +.+.|++..+...-.||=...|+.+.++. +- ..-..+.+..+|++.++--.++.+.++.++.
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34455699999999 77888877777777777778898888764 32 2335688888888888888899999998877
Q ss_pred CceeceE-----EEecCCCCCCCCceEEEEcCCCCEEEEEEC-CeEEEEECCCCeeeeeec---cCCC----CCCCEEEE
Q 001535 947 WEKRKSV-----TIHIPAGKTPTGDTRVQFNADQVRMLVVHE-TQLAIYDASKMERIRQWT---PQDA----LSAPISCA 1013 (1058)
Q Consensus 947 ~~~~~~~-----~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d-~~v~v~d~~~~~~~~~~~---~~~~----~~~~v~~l 1013 (1058)
....... .+...... --+.-.++|+|.++.|.++.+ +-+.||.+..+....... .+.. .-..|.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKK-NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCC-CcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 5332211 12211111 256788999999988888754 446666655332111110 0000 02346677
Q ss_pred EEccC-CCEEEEEeCCCcEEEEeCCCCeEEEE
Q 001535 1014 VYSCN-SQLVFATFCDGNIGVFDADTLRLRCY 1044 (1058)
Q Consensus 1014 ~~s~d-g~~l~t~~~dg~i~iw~~~~~~~~~~ 1044 (1058)
.|.+. +.+|+-+.+++.+.-.|.. |+.+..
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecC-CCeeee
Confidence 77764 4566667777777777764 443433
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.018 Score=40.58 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=29.8
Q ss_pred CCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCc
Q 001535 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379 (1058)
Q Consensus 344 ~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~ 379 (1058)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999999 8999999999999998 4543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.023 Score=66.31 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=70.4
Q ss_pred EEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 001535 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1058)
Q Consensus 359 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~ 438 (1058)
.+|.|+..|.|-..|+...-... .| -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 47888889999998886532100 00 1224679999999999999999999999999999999
Q ss_pred CcceeeeeecccccC---eEEEEeecCCCeeEEEEEeCCCcEEEEe
Q 001535 439 NDLRQHSQIDAHVGA---VNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 439 ~~~~~~~~l~~h~~~---v~~l~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+.++.+ ..|..+ |..+.+..++. .++++...|. +|.
T Consensus 163 k~l~~i---~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 KILKVI---TEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWK 201 (1206)
T ss_pred cceeee---eecCCccceEEEEEEeCCCc--EEEEccCCCc--eEE
Confidence 887754 334443 44444555555 6777776666 666
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.68 Score=44.68 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=84.5
Q ss_pred CCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccC--------CCeeEEEEcCCCCEEE-EEeCCCcEEEEE
Q 001535 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ--------KRITGLAFSTSLNILV-SSGADAQLCVWS 943 (1058)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~--------~~V~~l~~s~d~~~l~-s~s~Dg~i~iwd 943 (1058)
.+.+.-..+| +|++.+ |...-.-.++....+.+..-+.+|. +--+.++|+.|.+.+. +-+.+-+|.-||
T Consensus 109 nR~NDgkvdP-~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDP-DGRYYG-GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCC-CCceee-eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 3456667889 898843 4322111122323333333333333 3335788988876554 455677787788
Q ss_pred --CCCCceeceEE---EecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEcc
Q 001535 944 --IDTWEKRKSVT---IHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017 (1058)
Q Consensus 944 --~~~~~~~~~~~---~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~ 1017 (1058)
..+|....... +.......+...-.++...+|.+.++. +.++|.-.|..+|+.+..+... ...+++++|--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP---t~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP---TPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC---CCceEEEEecC
Confidence 55654433221 111111111333456667788877775 7788999999999999998876 68899999964
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.032 Score=39.32 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=28.2
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEEe
Q 001535 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (1058)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~dg~i~iwd~ 435 (1058)
...|.+++|+|..++||.|+.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457999999999999999999999999988
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.47 Score=55.44 Aligned_cols=187 Identities=12% Similarity=0.091 Sum_probs=98.2
Q ss_pred cCCCEEEEEe-C------CcEEEEECCCceEEEEecCCCCCe-eEEEEecCCCcEEEEEECCC-----CEEEEEccCce-
Q 001535 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDE- 906 (1058)
Q Consensus 841 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~lasg~~dg-----~v~iwd~~~~~- 906 (1058)
-+++..++|+ + ..+..||..+..-...-.-...+- .+++. - ++++.+.|+.++ ++..||..+.+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 4667777765 3 237788987664321111111111 12222 2 788889998764 48889987653
Q ss_pred -eeeEecccCCCeeEEEEcCCCCEEEEEeCCC-----------------------cEEEEECCCCceeceEEEecCCCCC
Q 001535 907 -VKSKLKGHQKRITGLAFSTSLNILVSSGADA-----------------------QLCVWSIDTWEKRKSVTIHIPAGKT 962 (1058)
Q Consensus 907 -~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~ 962 (1058)
.+..+.........+ .-+|+..+.||.++ .+..||..+.+.......... .
T Consensus 380 ~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~--r- 454 (557)
T PHA02713 380 KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG--T- 454 (557)
T ss_pred EECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc--c-
Confidence 222222211112222 23678888887653 477788777554322211111 0
Q ss_pred CCCceEEEEcCCCCEEEEE-EC------CeEEEEECCC-C--eeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCC--c
Q 001535 963 PTGDTRVQFNADQVRMLVV-HE------TQLAIYDASK-M--ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG--N 1030 (1058)
Q Consensus 963 ~~~v~~l~~s~d~~~l~~~-~d------~~v~v~d~~~-~--~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg--~ 1030 (1058)
.. .+++ .-+|+..++| .+ ..+..||..+ . ..+..+... ......++ -+|+..++|+.|| +
T Consensus 455 -~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~~~~--~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 455 -IR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALHTIL--HDNTIMMLHCYESYML 526 (557)
T ss_pred -cc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccceeEE--ECCEEEEEeeecceee
Confidence 11 1222 3345555554 22 2367898876 3 333333221 12222222 3788888999888 7
Q ss_pred EEEEeCCCCeEE
Q 001535 1031 IGVFDADTLRLR 1042 (1058)
Q Consensus 1031 i~iw~~~~~~~~ 1042 (1058)
+..||..+.+.-
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 889999888653
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.13 Score=54.16 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=101.3
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEE-EEec-CCCC----Cee-EEEEecCCCcEEEEEECCCCEEEE-E
Q 001535 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVM-TTFM-SPPP----AST-FLAFHPQDNNIIAIGTEDSTIHIY-N 901 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~~~~~lasg~~dg~v~iw-d 901 (1058)
....+..+-..|||+++..-+..++.++++.+...- +.+- ...+ .|+ .+..-. +|.-|.++..||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456688889999999998888888999988754321 1111 1111 122 222223 67778889999988877 4
Q ss_pred ccCc-e----eeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCC
Q 001535 902 VRVD-E----VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1058)
Q Consensus 902 ~~~~-~----~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 976 (1058)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+.+-..... ..+.-+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-------~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-------QAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-------cCcceeeeCcccc
Confidence 4432 1 12222222233433333334456777788888888766553322111111 4567899999999
Q ss_pred EEEEEECCeEEEEECCCCeeeeee
Q 001535 977 RMLVVHETQLAIYDASKMERIRQW 1000 (1058)
Q Consensus 977 ~l~~~~d~~v~v~d~~~~~~~~~~ 1000 (1058)
++++-..++++++.+++..+-..|
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNPEISW 394 (733)
T ss_pred hheeecCCceEEEEecCCCCCccH
Confidence 999999999999998876554443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.9 Score=42.68 Aligned_cols=260 Identities=14% Similarity=0.078 Sum_probs=129.3
Q ss_pred CceEEeeCCCCEEEEEECCCcEEEEEccCC------ccccccccCCCcccccCcccceeeeeccccccccCCCCcceeec
Q 001535 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG------LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1058)
Q Consensus 632 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~ 705 (1058)
-+.++++|.+.+.++....+...+||.... ....-.+............+.+.|.....+.++...
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g-------- 96 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG-------- 96 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC--------
Confidence 478999999998888888899999998622 111222221111111223445555544443322211
Q ss_pred cCCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecC--cceEEEee
Q 001535 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS--AVGLLALG 783 (1058)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~ 783 (1058)
......++.++.||+|.-|.............+.+.. .....--..+++... +.+|.++.
T Consensus 97 -----------------~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaad 158 (336)
T TIGR03118 97 -----------------ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAAN 158 (336)
T ss_pred -----------------cccceeEEEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEec
Confidence 0112345788889999999853221100011122211 001122334555533 45565554
Q ss_pred -ccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEECCC
Q 001535 784 -SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (1058)
Q Consensus 784 -~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~ 861 (1058)
.+++|.|||-.-......|...... +..+.-... +......-.|+-..-.++++.=+.+. -|.|-+||. .
T Consensus 159 F~~g~IDVFd~~f~~~~~~g~F~DP~------iPagyAPFn-Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~ 230 (336)
T TIGR03118 159 FRQGRIDVFKGSFRPPPLPGSFIDPA------LPAGYAPFN-VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-N 230 (336)
T ss_pred cCCCceEEecCccccccCCCCccCCC------CCCCCCCcc-eEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-C
Confidence 3788988874433221111111000 000000000 00000000011111122222212222 467999997 4
Q ss_pred ceEEEEecC--CCCCeeEEEEec-----CCCcEEEEEECCCCEEEEEccCceeeeEecccCC------CeeEEEEcC
Q 001535 862 FKVMTTFMS--PPPASTFLAFHP-----QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK------RITGLAFST 925 (1058)
Q Consensus 862 ~~~~~~~~~--~~~~i~~l~~s~-----~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~------~V~~l~~s~ 925 (1058)
|..++++.. .-..-..|+..| ..+.+|+---.||+|-.||..+++.+..+....+ ..+.|+|-.
T Consensus 231 G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 231 GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 677777742 223455666654 2567887777899999999999988877765443 456677754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.035 Score=64.92 Aligned_cols=101 Identities=17% Similarity=0.299 Sum_probs=75.0
Q ss_pred CCCEEEEEe-CCcEEEEECCCc-eEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCee
Q 001535 842 NDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1058)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 919 (1058)
-+.+++.|+ .|.+...|+... .+...=..-.++|++++|+. +|++++.|-.+|.|.+||...++.++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455777777 577888887543 11111222456899999999 999999999999999999999999999888877766
Q ss_pred EEEE---cCCCCEEEEEeCCCcEEEEECC
Q 001535 920 GLAF---STSLNILVSSGADAQLCVWSID 945 (1058)
Q Consensus 920 ~l~~---s~d~~~l~s~s~Dg~i~iwd~~ 945 (1058)
++-+ ..++..+.++..-|. +|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 6654 456667887777775 56543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.64 Score=54.32 Aligned_cols=152 Identities=7% Similarity=0.029 Sum_probs=75.0
Q ss_pred CceEEEEEeeCC-----eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCC-------------------C
Q 001535 507 NIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD-------------------G 562 (1058)
Q Consensus 507 ~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~-------------------~ 562 (1058)
+|.+.+.||.++ .+..||..+..-...-..........+..-+|+..+.||.++. .
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 557778888764 4778887654322111111111111111236666666664211 0
Q ss_pred CceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCC------CcEEEEECCC-CceeeEeccCCCCCCCceE
Q 001535 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDN-VNILTSTDAEGGLPNLPRL 635 (1058)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~vwd~~~-~~~~~~~~~~~~~~~v~~v 635 (1058)
...+..||..+.+-...-.-... ........-++...+.||.+ ..+..||..+ .+................+
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred cceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 24578888877654322111111 11111122235555556543 2467899887 4543332222221122222
Q ss_pred EeeCCCCEEEEEECCC--cEEEEEccCC
Q 001535 636 RFSKEGNLLAVTTADN--GFKILANAIG 661 (1058)
Q Consensus 636 ~~s~~~~~l~~~~~dg--~i~iw~~~~~ 661 (1058)
+ -++++.++|+.++ .+..||..+.
T Consensus 510 ~--~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 510 L--HDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred E--ECCEEEEEeeecceeehhhcCcccc
Confidence 2 2778889999888 5666776655
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.041 Score=52.84 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=67.7
Q ss_pred CEEEEEe-CCcEEEEECCCce-EEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccC-CCeeE
Q 001535 844 SYVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRITG 920 (1058)
Q Consensus 844 ~~la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~ 920 (1058)
.-+++|. +|.|.+|...-.. ....+..-...|.++.-.-+++.+..+++.||.|+.|++.-++.+...-.|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 3455554 9999999876221 1111111222333333333356688999999999999999998887777777 56666
Q ss_pred EEEcCCCCEEEEE--eCCCcEEEEECCC
Q 001535 921 LAFSTSLNILVSS--GADAQLCVWSIDT 946 (1058)
Q Consensus 921 l~~s~d~~~l~s~--s~Dg~i~iwd~~~ 946 (1058)
+..+..+..++++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666666777777 7777777777765
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.45 E-value=3.4 Score=49.70 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=95.5
Q ss_pred EEEEEeCCCcEEEEe-cCCCeeEEeecccCCee-------------EEeecccCCceEEEEEee----------CCeEEE
Q 001535 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKA 522 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~~ 522 (1058)
.++.++.|+.+.-.| .+|+.+..+.. .+.|. .+.-.|.-.+..+++|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 577788899999999 99998876632 11110 000001001235666643 688999
Q ss_pred EecCCCCceEEeeCCC---------C--------cE-EEEEEccCCCEEEEEecc--------------CCCCceEEEEe
Q 001535 523 WLYDTMGSRVDYDAPG---------H--------WC-TTMLYSADGSRLFSCGTS--------------KDGDSFLVEWN 570 (1058)
Q Consensus 523 wd~~~~~~~~~~~~~~---------~--------~i-~~i~~s~~~~~l~~~~~~--------------~~~~~~i~~wd 570 (1058)
+|.++++....+.... + .+ ..+++.++...++....+ +.-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 9999999887765310 0 11 234555555555543210 11245677789
Q ss_pred CCCCceeeeeec-ccCc-------ceeEEEEcC-CCC---EEEEEeCCCcEEEEECCCCceeeEec
Q 001535 571 ESEGTIKRTYAG-FRKK-------SNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (1058)
Q Consensus 571 ~~~~~~~~~~~~-~~~~-------~i~~~~~~~-~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~ 624 (1058)
.+||+.+..++. |++. ...-+.+.. +|+ .++.++.+|.++++|.++|+.+....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 999999888775 3210 011122332 453 78889999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=3.8 Score=41.57 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=119.9
Q ss_pred CCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeee-eccCCCCCCCeeEEEEe
Q 001535 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALS 840 (1058)
Q Consensus 762 ~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s 840 (1058)
+-...+.++.|+|+.+.|++......-.|+ -..+|.+++. .+.+ -.....+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVE----------------------lt~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVE----------------------LTKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEE----------------------EecCCceEEEecccc---cCChhHeEEe
Confidence 355569999999999999998887655554 2234444432 2332 3344567888
Q ss_pred cCCCEEEEEe-CCcEEEEECCCceEEE-------EecC--C-CCCeeEEEEecCCCcEEEEEECCCCEEEEEccCce-e-
Q 001535 841 KNDSYVMSAT-GGKISLFNMMTFKVMT-------TFMS--P-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-V- 907 (1058)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~~~~~-------~~~~--~-~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~-~- 907 (1058)
.+|+++++-. +..+.++.+.....+. .+.. + ...--.++|+| ..+.|..+-+-.-+.||.+..+. .
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888887776 7778777665442211 1211 2 44567899999 55666666666667777765332 1
Q ss_pred -eeEeccc-------CCCeeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCC---CCceEEEEcCCC
Q 001535 908 -KSKLKGH-------QKRITGLAFSTS-LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP---TGDTRVQFNADQ 975 (1058)
Q Consensus 908 -~~~~~~h-------~~~V~~l~~s~d-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~l~~s~d~ 975 (1058)
+.....+ -..|.++.|.+. +.+|+-+..++.+.-.|.... .+..+.+......-. ...-.++..++|
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g 295 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDG 295 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCC
Confidence 1111111 135677788764 556666667777777777653 244443332221111 334568888888
Q ss_pred CEEEEEECCeEEEE
Q 001535 976 VRMLVVHETQLAIY 989 (1058)
Q Consensus 976 ~~l~~~~d~~v~v~ 989 (1058)
...+++..+-.+.+
T Consensus 296 ~lYIvSEPnlfy~F 309 (316)
T COG3204 296 NLYIVSEPNLFYRF 309 (316)
T ss_pred CEEEEecCCcceec
Confidence 88777765544444
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.29 E-value=3.7 Score=45.22 Aligned_cols=198 Identities=12% Similarity=0.120 Sum_probs=101.9
Q ss_pred CCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcc-
Q 001535 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA- 804 (1058)
Q Consensus 726 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~- 804 (1058)
...+.+-+-||.+.+++-+...- ...+++ .-.. .-+.|.+....+++++++..+..|....-.....+..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f-----~~~lp~-~llP---gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~ 215 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAF-----SRFLPD-FLLP---GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSR 215 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEE-----EEEcCC-CCCC---cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccc
Confidence 45667778889999998653221 222221 1111 2467888888899999999999988643221111110
Q ss_pred ---------cccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEEEecCCCCCe
Q 001535 805 ---------TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAS 875 (1058)
Q Consensus 805 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i 875 (1058)
....-..-|...-|+.. -.|..+.++.....+++-+...+.+.+. +|......+-...+.
T Consensus 216 ~~~~~~~~~~~k~l~~dWs~nlGE~~----------l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~ 284 (418)
T PF14727_consen 216 QSGTEQDISSGKKLNPDWSFNLGEQA----------LDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPS 284 (418)
T ss_pred cccccccccccccccceeEEECCcee----------EEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCcee
Confidence 00001112332222211 1122333333444555556666777765 454443333222222
Q ss_pred eEEEEe------cCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEE---cCCCCEEEEEeCCCcEEEEECCC
Q 001535 876 TFLAFH------PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF---STSLNILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 876 ~~l~~s------~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~---s~d~~~l~s~s~Dg~i~iwd~~~ 946 (1058)
....|. +..+..+++++.++++.||.= .+++..-+....+| ++.. ..-...|++-+.+|.+.+-=+.|
T Consensus 285 ~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 285 CFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 222221 211235888999999999863 33333333333333 3332 22345788888899888876665
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.28 E-value=4.2 Score=43.86 Aligned_cols=188 Identities=14% Similarity=0.174 Sum_probs=107.0
Q ss_pred EEEEEeCCCcEEEEecCCCeeEEeecccCCeeEEeecc--cCCceE--EEEEee-C---CeEEEEecCCCCceE-EeeC-
Q 001535 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH--KENIQF--IFSTAI-D---GKIKAWLYDTMGSRV-DYDA- 536 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~--l~s~~~-d---g~i~~wd~~~~~~~~-~~~~- 536 (1058)
+++....++-+.+||.+|+.++.+. .++.+.+.+.. .-+|+. |+.++. + .+|++|.++.....+ .+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6777788889999999999998875 23444443211 112222 344443 2 579999887433322 2221
Q ss_pred ------CCCcEEEEEE--cc-CCCEEEEEeccCCCCceEEEEeCC---CC----ceeeeeecccCcceeEEEEcCCCCEE
Q 001535 537 ------PGHWCTTMLY--SA-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1058)
Q Consensus 537 ------~~~~i~~i~~--s~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1058)
....+..+|+ ++ +|.+.+.... +++.+..|.+. .+ +.+++|.... .+..|.......+|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 1124566666 33 4665555443 46777777653 33 4677777654 46778888888899
Q ss_pred EEEeCCCcEEEEECCCC-----ceeeEeccCCCCCCCceEEee--CCC--CEEEEEECCCcEEEEEccCC
Q 001535 601 LAVGEDSQIKFWDMDNV-----NILTSTDAEGGLPNLPRLRFS--KEG--NLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 601 ~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~v~~v~~s--~~~--~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+.+-++.-|.-|+.+.. ..+.......-...|..+++- .++ .+|++.-.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999988888887632 222222222223456667664 333 34455555778999998654
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.27 E-value=6.4 Score=43.99 Aligned_cols=117 Identities=8% Similarity=-0.003 Sum_probs=69.7
Q ss_pred CCcEEEEEEccCC-----CEEEEEeccCCCCceEEEEeCC-----CCceeeeeecccCcc----eeEEEEcCCCCEEEEE
Q 001535 538 GHWCTTMLYSADG-----SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAV 603 (1058)
Q Consensus 538 ~~~i~~i~~s~~~-----~~l~~~~~~~~~~~~i~~wd~~-----~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~ 603 (1058)
-..|..+.|.|-+ .+||+- ....|.+|.+. ..+....-..+-... -..+.|+|....|++-
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQ-----HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQ-----HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEe-----ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence 3468889999853 244443 37889999875 233333322222111 2246799998888776
Q ss_pred eCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECC-CcEEEEEccC
Q 001535 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANAI 660 (1058)
Q Consensus 604 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~~ 660 (1058)
.....=.++++........... ...+.|.|.+|.+||+.|+++-.. =.-+|||-..
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 6554444555544333222222 223468999999999988776543 3567888543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=2.1 Score=45.66 Aligned_cols=131 Identities=11% Similarity=0.189 Sum_probs=87.2
Q ss_pred ccccCCCCcceEEeec--CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccC
Q 001535 327 TWSLDDLPRTVAVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1058)
-|.+......+...+. .+++|.++.||+|.+ ++|+--.+.+|.+++....+...... ..-+.
T Consensus 47 gvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~ 110 (657)
T KOG2377|consen 47 GVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKT 110 (657)
T ss_pred EEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhcc
Confidence 5655555555555555 677999999999999 89999999999999985433221110 01223
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcE
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 477 (1058)
.+..|....|+.+ .-+|.....| +.+|.+...+ +.....+.|...|.-..|+++..-.+++|+-..+++
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 4556889999866 6666666665 7888776432 222245678999999999999885334444333433
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.21 E-value=10 Score=45.85 Aligned_cols=198 Identities=12% Similarity=0.103 Sum_probs=113.5
Q ss_pred EEEEEeCCCcEEEEe-cCCCeeEEeecccCC--------eeEEeecc--------------cCCceEEEEEeeCCeEEEE
Q 001535 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP--------VYSICPHH--------------KENIQFIFSTAIDGKIKAW 523 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~~w 523 (1058)
.++.++.++.|.-.| .+|+.+-++...... ...+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 355566667777777 777776555432110 11222211 1133478888899999999
Q ss_pred ecCCCCceEEeeCCCCc------------EEEEEEcc--CCCEEEEEeccCC------CCceEEEEeCCCCceeeeeecc
Q 001535 524 LYDTMGSRVDYDAPGHW------------CTTMLYSA--DGSRLFSCGTSKD------GDSFLVEWNESEGTIKRTYAGF 583 (1058)
Q Consensus 524 d~~~~~~~~~~~~~~~~------------i~~i~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 583 (1058)
|.++++....+...+.. -..+.-.| .+..+++++...+ .++.|+-+|.++|+.+..+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99988887765432110 01111222 2345555543222 2688999999999998876521
Q ss_pred c---------C-------c-ceeEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceeeEeccCCC
Q 001535 584 R---------K-------K-SNGVVQFDTTQNHFLAVG------------------EDSQIKFWDMDNVNILTSTDAEGG 628 (1058)
Q Consensus 584 ~---------~-------~-~i~~~~~~~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~~~ 628 (1058)
. + . .-...++.+....++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 0 012345555555554422 134577788889988877755322
Q ss_pred C-------CCCceEEeeC-CCC---EEEEEECCCcEEEEEccCCccc
Q 001535 629 L-------PNLPRLRFSK-EGN---LLAVTTADNGFKILANAIGLRS 664 (1058)
Q Consensus 629 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~ 664 (1058)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++..
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 1 0111122322 553 7889999999999999998433
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.97 Score=50.08 Aligned_cols=156 Identities=12% Similarity=0.166 Sum_probs=91.8
Q ss_pred CCeeEEEEecCCCcEEEEEE--CCCCEEEEEccCceeeeEecccCCCeeEEEEcCC----CCEEEEEeCCCcEEEEECCC
Q 001535 873 PASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS----LNILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~--~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d----~~~l~s~s~Dg~i~iwd~~~ 946 (1058)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.+++|.|- ...|...-..+.|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4678899985 555555443 344443322 2334444 45999999985 33555566778899999862
Q ss_pred -----CceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeE-EEEECCCCeeeeeeccCCCCCCCEEEEEEccCCC
Q 001535 947 -----WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL-AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 1020 (1058)
Q Consensus 947 -----~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v-~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 1020 (1058)
.+.+......+... .+--.....|.|....|++-....+ .++++......-...... .+.|-|.+|.+||+
T Consensus 92 s~~e~~K~l~sQtcEi~e~-~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~--~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREP-FPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT--SGLIHCACWTKDGQ 168 (671)
T ss_pred CccccccceeeeeeeccCC-cccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC--CceEEEEEecCcCC
Confidence 22222222222111 1133467889999998888433333 455555433322222211 68999999999999
Q ss_pred EEEEEeC-CCcEEEEeCCCC
Q 001535 1021 LVFATFC-DGNIGVFDADTL 1039 (1058)
Q Consensus 1021 ~l~t~~~-dg~i~iw~~~~~ 1039 (1058)
.|+++-. .=.-++||-...
T Consensus 169 RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEEeCCeEEEEEecCchh
Confidence 8887553 334678886543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=3.2 Score=48.52 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=113.0
Q ss_pred EEEEEecc------ceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCC-----
Q 001535 359 LLLVGSSN------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----- 427 (1058)
Q Consensus 359 lla~gs~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----- 427 (1058)
+++.|+.+ ..+..+|..+++-....+ +. +...-.++++- +|...++|+.|
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 67777666 367788877764322100 11 11112233332 56788888888
Q ss_pred -CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCC-----cEEEEecCCCeeEEeecccCCeeEEe
Q 001535 428 -HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWELSGRKLFNFEGHEAPVYSIC 501 (1058)
Q Consensus 428 -g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~h~~~v~~~~ 501 (1058)
.++..||..+++-.. ...+........... -+|. +.|.||.|| +|-.||.....-...........+.+
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~--l~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g 422 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAV--LDGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG 422 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEE--ECCE--EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeE
Confidence 357888888766332 222222222121122 2455 678888886 47778832222111111111122211
Q ss_pred ecccCCceEEEEEeeCC------eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccC-CCCceEEEEeCCCC
Q 001535 502 PHHKENIQFIFSTAIDG------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEG 574 (1058)
Q Consensus 502 ~~~~~~~~~l~s~~~dg------~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~ 574 (1058)
.. .-+|.+.++||.++ .+..||..+..-...-.........-+..-++...+.||.++ .....+..||..+.
T Consensus 423 v~-~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 423 VA-VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred EE-EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCC
Confidence 11 11567888888664 466777765543332222111111112223566666666532 11334777888776
Q ss_pred ceeeee--ecccCcceeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcee
Q 001535 575 TIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNIL 620 (1058)
Q Consensus 575 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~ 620 (1058)
+-...- ..... ....+. -++...++|+.|| +|..||..+.+..
T Consensus 502 ~W~~v~~m~~~rs-~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 502 QWTMVAPMTSPRS-AVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred ceeEcccCccccc-cccEEE--ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 544331 11111 122222 2345556676654 4666766665543
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.92 E-value=12 Score=45.02 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=63.6
Q ss_pred EEEecCCCEEEEEeCCcEEEEECCCceEEEEecC--CCCCeeEEEEecCCCcEEEEEECCCCEEE--EEccCceeeeEec
Q 001535 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHI--YNVRVDEVKSKLK 912 (1058)
Q Consensus 837 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~lasg~~dg~v~i--wd~~~~~~~~~~~ 912 (1058)
.|+.|-+.++.+|-...+++||+...++++.... -...|+.+.+ .+..+++|...-.|.+ |+-..++.+ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 4566777788888889999999987776655432 2456777777 4566777775555554 443344433 332
Q ss_pred cc--CCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001535 913 GH--QKRITGLAFSTSLNILVSSGADAQLCVWSID 945 (1058)
Q Consensus 913 ~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~ 945 (1058)
.. ...|+++.+- |...+|.+..=|.+.+-.+-
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 21 1236666555 34566666665666655543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.6 Score=41.60 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=102.9
Q ss_pred CCCEEEEEe---CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCe
Q 001535 842 NDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 918 (1058)
Q Consensus 842 dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V 918 (1058)
+|.++.+.+ ...|++||+.+++.+..-.-....+..=-...-+..+.+-.-.+|.-.++|..+.+++..+. -.+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 556666554 34599999999988766543322221111111133444555678889999999988887765 33444
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEE-EECCeEEEEECCCCeee
Q 001535 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERI 997 (1058)
Q Consensus 919 ~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~-~~d~~v~v~d~~~~~~~ 997 (1058)
..++ .|++-|+.++...+++.-|.++.....+..... .+..-..++.+.|- ||..+|= -.+..|...+..+|+.+
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~-~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTD-DGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEE-CCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence 5554 456667777777788888888877666665542 22221334444443 3433332 24445555556666554
Q ss_pred eeeccC---------CCCCCCEEEEEEccCCC-EEEEE
Q 001535 998 RQWTPQ---------DALSAPISCAVYSCNSQ-LVFAT 1025 (1058)
Q Consensus 998 ~~~~~~---------~~~~~~v~~l~~s~dg~-~l~t~ 1025 (1058)
..+... ..+..-...+++.|++. +++||
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 433221 12244667899999874 55554
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.74 E-value=6.3 Score=47.06 Aligned_cols=144 Identities=10% Similarity=0.174 Sum_probs=75.7
Q ss_pred CeEEEEEeccceEEEEEccCCCccccccceeecccc---cCcccccccc-cCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 001535 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAA---CSLPFQASIF-KDVPISVSRVAWSPDGNYVGVAFTKHLIQL 432 (1058)
Q Consensus 357 ~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~dg~i~i 432 (1058)
+.+++. .|+.+.+||-.....+ ..+++.-+... ....++.-.. ..-.-.|..|.+||+|++||..|..| |.|
T Consensus 34 rNLl~~--~d~~L~vWd~~e~~l~-~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V 109 (717)
T PF10168_consen 34 RNLLAC--RDGDLFVWDSSECCLL-TVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVV 109 (717)
T ss_pred eeeEEE--eCCEEEEEECCCCEEE-EEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEE
Confidence 434443 4678888886544332 22222221111 1112222111 22346899999999999999998876 445
Q ss_pred EEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEeecccCCeeEEeecccC-CceEE
Q 001535 433 YSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE-NIQFI 511 (1058)
Q Consensus 433 wd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l 511 (1058)
-.+... ......+.+-...|.|=.+.-+.. +... .+...|..+.|+|.. ++..|
T Consensus 110 ~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~~--------------------~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 110 LELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFTS--------------------NSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred EEeccc--cCccccccCCCcceeEEEEEechh---hccC--------------------CCCceEEEEEEcCCCCCCCeE
Confidence 444321 000001222233344433333222 1111 134457778888764 45678
Q ss_pred EEEeeCCeEEEEecCCCC
Q 001535 512 FSTAIDGKIKAWLYDTMG 529 (1058)
Q Consensus 512 ~s~~~dg~i~~wd~~~~~ 529 (1058)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 888889999999886533
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.64 E-value=13 Score=44.50 Aligned_cols=173 Identities=12% Similarity=0.159 Sum_probs=90.5
Q ss_pred cEEEEECCCceEEEEecCCCC----CeeEEEEecCCCc-EEEEEE-----------CCCCEEEEEcc-CceeeeEec--c
Q 001535 853 KISLFNMMTFKVMTTFMSPPP----ASTFLAFHPQDNN-IIAIGT-----------EDSTIHIYNVR-VDEVKSKLK--G 913 (1058)
Q Consensus 853 ~i~vwd~~~~~~~~~~~~~~~----~i~~l~~s~~~~~-~lasg~-----------~dg~v~iwd~~-~~~~~~~~~--~ 913 (1058)
.|++.|..+++.+..+....+ .+.++.|+..+.. ++++|. .+|.++.|++- .|+.+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 378888887776665543222 3666777753333 455444 23457777664 333222221 1
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEE-CCeEE--EEE
Q 001535 914 HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLA--IYD 990 (1058)
Q Consensus 914 h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d~~v~--v~d 990 (1058)
-.++|- +..|-..++.+| ....+++||+...+.+....... .+..|+.+++ .+..+++|. ...|. .|+
T Consensus 934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~----~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKF----IPNRISSIQT--YGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhcc----CceEEEEEee--cceEEEEeeccceEEEEEEe
Confidence 223443 444555555544 45579999998876655544432 1244555555 455666653 22343 344
Q ss_pred CCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001535 991 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
-...+ +..+.. +.-...|+.+.+- |...++.+..-|.+.+-.+.
T Consensus 1005 ~~~n~-l~~fad-D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQ-LIVFAD-DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred cCCCe-EEEEeC-CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 33322 222222 2224556666554 44456767777777766654
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.51 E-value=9.8 Score=42.37 Aligned_cols=276 Identities=13% Similarity=0.054 Sum_probs=133.7
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
.-...|..+.|.-.|. +-.|+.|| +..||..+++.+.... ..-..+|..+.-+-.| .|
T Consensus 162 l~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RL 219 (671)
T ss_pred ccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cE
Confidence 3456888999999997 45666666 4567777776654210 0011355555554455 45
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCee-EEeecc--cCCee
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGH--EAPVY 498 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h--~~~v~ 498 (1058)
.+|+.+| |.+.+.++....... ..-..+.|..+.=..+|. +-.|+..|..+.--..+... ....-| -+.|.
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccc
Confidence 5677777 777776652211100 011233344444444443 45555555433222222221 111222 12334
Q ss_pred EEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEcc--CCCEEEEEeccCCCCceEEEEeCCCCce
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1058)
++.. +.+| -+-+++.+|.+++-+.+-..........+..+...+.+| .+..+-... ..+.+.+-+-.+|..
T Consensus 294 sL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcE
Confidence 4433 3344 466677776666543221111111111122222222222 111111111 133455556666776
Q ss_pred eeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCCCCceEEeeCCCCEEEEEECCCcEEE
Q 001535 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1058)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 655 (1058)
++....-.+..|+..++..+ ..+-.|+...-+-.|+..+ +........ -..+.|..+.-.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEec
Confidence 66655555556777777764 4555566554455566555 333322222 1234677777788887 778888887654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.1 Score=51.60 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=74.4
Q ss_pred CeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEee-cccCCeeEEeecccCCceEEEEEeeCCeEEEEecC----
Q 001535 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD---- 526 (1058)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~---- 526 (1058)
...-+.-|.-++ ..+..+....+.||| ..+.....-. ...+.|..+.|...++++.+++.|..+.|.++.-.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444555455 333344456899999 6665443222 45788999999999999999999999999998431
Q ss_pred -CCCc----e--EEeeC-CCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeC
Q 001535 527 -TMGS----R--VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1058)
Q Consensus 527 -~~~~----~--~~~~~-~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1058)
.... . ..+.. ..++|.+..|.++|..++.+ .+.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s------GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS------GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe------CCEEEEECC
Confidence 1111 1 12222 33689999999999887766 456888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=10 Score=41.94 Aligned_cols=152 Identities=10% Similarity=0.070 Sum_probs=87.1
Q ss_pred eeEEEEecCCCcEEEEEECCCCEEEEEccCc--eeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceec-
Q 001535 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK- 951 (1058)
Q Consensus 875 i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~- 951 (1058)
...+..++ ++.++++|..-..++-||--.. +.+ . ......++++.|.+++..++++ .+|.+ +|....++.-.
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 7777776653332333432211 111 1 2234568899999998887755 56654 34444443211
Q ss_pred -eEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCc
Q 001535 952 -SVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 1030 (1058)
Q Consensus 952 -~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~ 1030 (1058)
.+... ........+.++.|.+++..+++|..|.+.... ..|+.-........-......+.|.++++.+++| .+|.
T Consensus 316 ~~f~~~-~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 316 FDFEEA-DIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred cceeec-ccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 11111 111111457899999999999999888766654 4444433322111114678899998887766655 5888
Q ss_pred EEEE
Q 001535 1031 IGVF 1034 (1058)
Q Consensus 1031 i~iw 1034 (1058)
|..|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7765
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.5 Score=51.50 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=94.3
Q ss_pred cCCCEEEEEe-C------CcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCC-----CEEEEEccCcee-
Q 001535 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDEV- 907 (1058)
Q Consensus 841 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg-----~v~iwd~~~~~~- 907 (1058)
.++..++.|+ + ..+..||..+.+-...-.-...+...-+..- ++++++.|+.++ .+..||..+++-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4566666664 2 2477888877654322111111111112223 678888888663 577788776532
Q ss_pred -eeEecccCCCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEE
Q 001535 908 -KSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1058)
Q Consensus 908 -~~~~~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~ 980 (1058)
...+....... +++ .-+++..+.||.+ ..+..||..+.+........ ... .. .+ +...+++.++.
T Consensus 372 ~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r--~~-~~-~~~~~~~iyv~ 443 (534)
T PHA03098 372 EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISH--YG-GC-AIYHDGKIYVI 443 (534)
T ss_pred eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--ccc--cC-ce-EEEECCEEEEE
Confidence 11221111111 122 2356777777732 35888998876543221111 111 11 12 22335555555
Q ss_pred E-EC--------CeEEEEECCCCeee--eeeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 001535 981 V-HE--------TQLAIYDASKMERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLR 1042 (1058)
Q Consensus 981 ~-~d--------~~v~v~d~~~~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~d-----g~i~iw~~~~~~~~ 1042 (1058)
| .+ ..+.+||..+.+-. ...... ......+. .+++.++.|+.+ ..|.+||..+.+..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP---RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcc---cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 4 21 23888898765422 211111 11112222 377777777754 47899999887653
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=5.5 Score=43.91 Aligned_cols=146 Identities=11% Similarity=0.086 Sum_probs=88.7
Q ss_pred eeEEEEecCCCEEEEEeCCcEEE-EECCCceE--EEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCce----
Q 001535 834 VPCIALSKNDSYVMSATGGKISL-FNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE---- 906 (1058)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~v-wd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~---- 906 (1058)
...+..++||.+++.+..|.+.. ||- +.. ...-......++.+.+.+ ++.+++++ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccc
Confidence 45567789999999999876543 442 221 111122345688999998 78777655 566544 3444443
Q ss_pred -eeeEecc--cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEEC
Q 001535 907 -VKSKLKG--HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 983 (1058)
Q Consensus 907 -~~~~~~~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d 983 (1058)
....... -...+.++.|.+++..++ ++.+|.+.... +.|+. ................+.|.++++.++++.+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~t---W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKS---WKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcc---eeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 1222221 123588999998876655 56778666654 33332 1111111122266789999999999999999
Q ss_pred CeEEEE
Q 001535 984 TQLAIY 989 (1058)
Q Consensus 984 ~~v~v~ 989 (1058)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 887655
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.2 Score=48.27 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=59.3
Q ss_pred EEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEE-EECCCCCEEEEEeCCCeEEEEEecC
Q 001535 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV-AWSPDGNYVGVAFTKHLIQLYSYAG 437 (1058)
Q Consensus 359 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~spdg~~las~~~dg~i~iwd~~~ 437 (1058)
-+++|+.+|.|.+|++........ ....-...|.++ .--.++.+..+++.||.|+-|++.-
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSD------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred eEEeecccceEEEecCCccchHHH------------------hhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence 378999999999999873221110 011112233332 2333566888999999999999987
Q ss_pred CCcceeeeeecccc-cCeEEEEeecCCCeeEEEEE--eCCCcEEEEe
Q 001535 438 SNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE 481 (1058)
Q Consensus 438 ~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~--~~d~~i~iwd 481 (1058)
++.+. ....|. .++.....+..++ .++.. |.|..++.|+
T Consensus 134 ~k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 134 NKVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWN 175 (238)
T ss_pred Cceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcc
Confidence 76554 234555 4454444444444 34444 5555666665
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.9 Score=49.81 Aligned_cols=113 Identities=13% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEec-ccCCCeeEEEEc--CCCCEEEEEeCCCcEEEEECC----
Q 001535 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-GHQKRITGLAFS--TSLNILVSSGADAQLCVWSID---- 945 (1058)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~i~iwd~~---- 945 (1058)
..++-+.-|. -++..++.+...++.|||...+....+-. ...+.|..+.|. |||+.+++.|..+.|.++.-.
T Consensus 30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444454554 44554444445589999999886443322 346889999985 789999999999999998532
Q ss_pred -----CCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEE
Q 001535 946 -----TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYD 990 (1058)
Q Consensus 946 -----~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d 990 (1058)
+...+..+.+ ..+++.+|.+..|.+||.+++ +.++++.|+|
T Consensus 109 ~~~~p~w~~i~~i~i---~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~d 154 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDI---SSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFD 154 (631)
T ss_pred hcCCcccceeEEEEe---ecCCCCCccceeEecCCeEEE-EeCCEEEEEC
Confidence 1222333333 234447789999999997665 4456677776
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=2.4 Score=48.66 Aligned_cols=184 Identities=10% Similarity=-0.017 Sum_probs=93.7
Q ss_pred cCCCEEEEEe-C-----CcEEEEECCCceEEEEecCCCCCe-eEEEEecCCCcEEEEEECCC--CEEEEEccCce--eee
Q 001535 841 KNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDE--VKS 909 (1058)
Q Consensus 841 ~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~lasg~~dg--~v~iwd~~~~~--~~~ 909 (1058)
.++.++++|+ + ..+..||..+++-...-.-...+. .+++ .- ++++.++|+.++ .+..||..+++ .+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 3455666665 3 247788887765332211111111 1222 23 788888888643 57888876543 222
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeE
Q 001535 910 KLKGHQKRITGLAFSTSLNILVSSGADA---QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 986 (1058)
Q Consensus 910 ~~~~h~~~V~~l~~s~d~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v 986 (1058)
.+....... .+..-+|+..+.||.++ .+..||..+.+.........+. .. ..+..-+|+..+.| |.+
T Consensus 348 ~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r----~~--~~~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 348 SLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH----YK--SCALVFGRRLFLVG--RNA 417 (480)
T ss_pred CCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc----cc--ceEEEECCEEEEEC--Cce
Confidence 222111111 12233677888887654 4778888775543221111100 11 12223456666655 356
Q ss_pred EEEECCCCeee--eeeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeE
Q 001535 987 AIYDASKMERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRL 1041 (1058)
Q Consensus 987 ~v~d~~~~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~d-----g~i~iw~~~~~~~ 1041 (1058)
.+||.++.+=. ...... ..... ++ .-+|+..++|+.+ .+|.+||..+++.
T Consensus 418 e~ydp~~~~W~~~~~m~~~---r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYP---RDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred EEecCCCCcEeEcCCCCCC---ccccE-EE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 77887765322 222111 11222 22 3477888888754 4688899888765
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.66 Score=55.16 Aligned_cols=147 Identities=12% Similarity=0.069 Sum_probs=96.6
Q ss_pred CCCCeeEEEEecCCCEEEEEe--CC-cEEEEECCCceEEE-----EecC------CCCCeeEEEEecCCCcEEEEEECCC
Q 001535 830 LEEAVPCIALSKNDSYVMSAT--GG-KISLFNMMTFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGTEDS 895 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~--dg-~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~~~~~lasg~~dg 895 (1058)
..-.+..++..+|++..++.. +| .|..||+++..... .+.. ...-..++.|.|.=-...|+...|+
T Consensus 99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence 345567777888888776654 44 48999997543211 1111 1223567888873334456777899
Q ss_pred CEEEEEccCce-eeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCC
Q 001535 896 TIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1058)
Q Consensus 896 ~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 974 (1058)
.|++..+.-.. ....+. -...+++++|+|.|+.++.|-..|++.-|...-... ..++.+.......|.+|+|-..
T Consensus 179 sl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred chhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccccee---ecccCCCcCCCcceeEEEEecc
Confidence 99988775432 222322 446789999999999999999999999887654221 1222222222378899999988
Q ss_pred CCEEEE
Q 001535 975 QVRMLV 980 (1058)
Q Consensus 975 ~~~l~~ 980 (1058)
..++++
T Consensus 255 ~eflvv 260 (1405)
T KOG3630|consen 255 QEFLVV 260 (1405)
T ss_pred eeEEEE
Confidence 888887
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.76 E-value=11 Score=43.40 Aligned_cols=220 Identities=10% Similarity=0.077 Sum_probs=109.4
Q ss_pred CCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEE
Q 001535 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1058)
Q Consensus 344 ~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1058)
-+++-+|..+|....=+. +..-.|+|++.. |..+.. .+-.|. .+..+.||.+..+| +
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI-~ 99 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELI-C 99 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEE-E
Confidence 344555666664321111 234568888864 555432 122243 88899999776554 5
Q ss_pred EeCCCeEEEEEecCCCcceee-eeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccC-CeeEE
Q 001535 424 AFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA-PVYSI 500 (1058)
Q Consensus 424 ~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~-~v~~~ 500 (1058)
...+|+++||++-... +... .-.......|..+.|...|- +.-..+|.+.+-+ .+...+.++..-.. .....
T Consensus 100 v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV----avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~ 174 (829)
T KOG2280|consen 100 VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV----AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKS 174 (829)
T ss_pred EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce----EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCc
Confidence 6799999999986532 2210 01123334566666666553 3333456666555 33323333322110 01111
Q ss_pred eecccCC---ceEEEEEe-eCCeEEEEecCCCC-ceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCc
Q 001535 501 CPHHKEN---IQFIFSTA-IDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1058)
Q Consensus 501 ~~~~~~~---~~~l~s~~-~dg~i~~wd~~~~~-~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1058)
+|.-..+ ...++-.. ..+ ..++-.+... ....+......+..+++||+.++|+.-. ..|.|.+-+.+..+
T Consensus 175 ~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt----~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 175 CWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYT----ETGKIWVVSIDLSQ 249 (829)
T ss_pred ceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEe----cCCcEEEEecchhh
Confidence 2211111 11111111 000 0111111111 1122233345788899999999999876 48888888888777
Q ss_pred eeeeeecccCcceeEEEEcCC
Q 001535 576 IKRTYAGFRKKSNGVVQFDTT 596 (1058)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~ 596 (1058)
....+..........++|..+
T Consensus 250 ~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 250 ILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred hhhccCCCCCCchHhceeecC
Confidence 777666433322334555443
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.42 E-value=9.5 Score=38.29 Aligned_cols=191 Identities=15% Similarity=0.081 Sum_probs=121.2
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceee
Q 001535 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~ 908 (1058)
....-..++-++||..-.++. .+.|--.|-.+|+....--+....-..+..-| |+..-++-+.. .|.=.|-++.+.
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~ev- 136 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEV- 136 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccce-
Confidence 344556788889998887777 67788889999988776666666677788888 44443332222 444455545432
Q ss_pred eEe----cccCCCeeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCC
Q 001535 909 SKL----KGHQKRITGLAFSTSLNILVSSGAD---------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1058)
Q Consensus 909 ~~~----~~h~~~V~~l~~s~d~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 975 (1058)
.++ +.-........|.++|++.+++..- +.|++|+.-.| .....|+..|||
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------------~gpyGi~atpdG 200 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------------GGPYGICATPDG 200 (353)
T ss_pred EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------------CCCcceEECCCC
Confidence 222 2233567788999999998887531 34555554332 445788999999
Q ss_pred CEEEEE-ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 001535 976 VRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1040 (1058)
Q Consensus 976 ~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~ 1040 (1058)
..-+++ .+..|...|..++.. ..+...+.....-..+.-++.|+..++....+.+..||-.+-.
T Consensus 201 svwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 988775 566677777766622 2222222213344556667778877776667777777665443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=3.8 Score=48.15 Aligned_cols=152 Identities=8% Similarity=-0.009 Sum_probs=71.0
Q ss_pred CceEEEEEeeC-----CeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCC--CceEEEEeCCCCceeee
Q 001535 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKRT 579 (1058)
Q Consensus 507 ~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~ 579 (1058)
++..++.||.+ ..+..||..+..-...-..........+..-+++..+.||....+ -..+..||..+.+-...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45677777765 346667765543221111111111111122356666666632211 25688899877644322
Q ss_pred eecccCcceeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECC-
Q 001535 580 YAGFRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD- 650 (1058)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d- 650 (1058)
-.......-.+ +...++...+.||.+ ..+.+||..+++....-...........+. -++++++.|+.+
T Consensus 422 ~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~ 498 (534)
T PHA03098 422 SPLPISHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKY 498 (534)
T ss_pred CCCCccccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcC
Confidence 11111111112 222345555556532 238889988776543321111111111222 266777777654
Q ss_pred ----CcEEEEEccCC
Q 001535 651 ----NGFKILANAIG 661 (1058)
Q Consensus 651 ----g~i~iw~~~~~ 661 (1058)
+.+.+||..+.
T Consensus 499 ~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 499 EYYINEIEVYDDKTN 513 (534)
T ss_pred CcccceeEEEeCCCC
Confidence 45777776654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.18 E-value=7.9 Score=42.87 Aligned_cols=204 Identities=13% Similarity=0.015 Sum_probs=110.8
Q ss_pred EecCCCEEEEEeCCcEEEEECCCceEEEEecCC--CCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccC-
Q 001535 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ- 915 (1058)
Q Consensus 839 ~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~- 915 (1058)
...||+.++...+|.|.-.|..++..+.....- ...+..-.+.. +|+ |..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 445777776666888888888888866544322 12333333444 565 6678889999999988998887776554
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEE--CCeEEEEECCC
Q 001535 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASK 993 (1058)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--d~~v~v~d~~~ 993 (1058)
..+..-....++.. ...+.|+.+.-.|..+|+..-....... ....+..-....++..++... ++.+.-.|..+
T Consensus 143 ~~~~~~~v~~~~~v-~~~s~~g~~~al~~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGDGTV-YVGTDDGHLYALNADTGTLKWTYETPAP---LSLSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcCcEE-EEecCCCeEEEEEccCCcEEEEEecCCc---cccccccCceeecceEEEecCCCcceEEEEEccC
Confidence 12222223334433 3333678888888888776444333211 001111111133444444433 44566677777
Q ss_pred CeeeeeeccCCCC-CCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCc
Q 001535 994 MERIRQWTPQDAL-SAPISCAVYSC-----NSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1048 (1058)
Q Consensus 994 ~~~~~~~~~~~~~-~~~v~~l~~s~-----dg~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 1048 (1058)
|...-.......- ...+....... .+.-++.++.++.+...+..+|+.+-+....
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7665443211100 01010011111 1222356667788888888888888776653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.14 E-value=3.5 Score=45.53 Aligned_cols=148 Identities=11% Similarity=0.034 Sum_probs=78.9
Q ss_pred CeeEEEEecCCCcEEEEEE-----------CCC-CEEEEEccC--ce--eeeEecccCCCeeEEEEcCCCCEEEEEeCCC
Q 001535 874 ASTFLAFHPQDNNIIAIGT-----------EDS-TIHIYNVRV--DE--VKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1058)
Q Consensus 874 ~i~~l~~s~~~~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg 937 (1058)
....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| +++ ++.+.
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 456788888 777766542 223 676665432 22 223333334456889999998 444 44444
Q ss_pred cEEEEECCCCc-e---eceEEEecCCC--CCCCCceEEEEcCCCCEEEE-EEC-------------------CeEEEEEC
Q 001535 938 QLCVWSIDTWE-K---RKSVTIHIPAG--KTPTGDTRVQFNADQVRMLV-VHE-------------------TQLAIYDA 991 (1058)
Q Consensus 938 ~i~iwd~~~~~-~---~~~~~~~~~~~--~~~~~v~~l~~s~d~~~l~~-~~d-------------------~~v~v~d~ 991 (1058)
..++.|.+... . ...+....... +.......++|.|||.+.++ +.. +.+.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 33344543211 1 11111111111 01144678999999987776 311 33455555
Q ss_pred CCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCC
Q 001535 992 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD 1028 (1058)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~d 1028 (1058)
.+++. ..+... -.....++|+++|+++++-..+
T Consensus 172 dg~~~-e~~a~G---~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKL-RVVAHG---FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeE-EEEecC---cCCCccceECCCCCEEEEccCC
Confidence 44332 222221 3456789999999987765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.05 E-value=15 Score=39.64 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=87.6
Q ss_pred CCCCeeEEEEec-CCCEEEEEeCCc------EEEEECCC--c--eEE-----EEecCCCC--------CeeEEEEecCCC
Q 001535 830 LEEAVPCIALSK-NDSYVMSATGGK------ISLFNMMT--F--KVM-----TTFMSPPP--------ASTFLAFHPQDN 885 (1058)
Q Consensus 830 ~~~~v~~~~~s~-dg~~la~~~dg~------i~vwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~~~ 885 (1058)
.-+.++.+.+.+ ++++++...+|. +..+++.. + ..+ ..+....+ ..-+|++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 445678899984 666666666666 55555443 1 111 11211221 233688866 78
Q ss_pred cEEEEEECC------CCEEEEEccCceeeeEec---------------ccCCCeeEEEEcCCCCEEEEEeC-----CC--
Q 001535 886 NIIAIGTED------STIHIYNVRVDEVKSKLK---------------GHQKRITGLAFSTSLNILVSSGA-----DA-- 937 (1058)
Q Consensus 886 ~~lasg~~d------g~v~iwd~~~~~~~~~~~---------------~h~~~V~~l~~s~d~~~l~s~s~-----Dg-- 937 (1058)
.++++.-.+ ..|+-++.. |+.+..+. .......+|+++|||+.|+++.. |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 777766556 677777765 55443331 13356789999999997666543 22
Q ss_pred c-------EEEE--ECCC-CceeceEEEecCCCC---CCCCceEEEEcCCCCEEEE
Q 001535 938 Q-------LCVW--SIDT-WEKRKSVTIHIPAGK---TPTGDTRVQFNADQVRMLV 980 (1058)
Q Consensus 938 ~-------i~iw--d~~~-~~~~~~~~~~~~~~~---~~~~v~~l~~s~d~~~l~~ 980 (1058)
. ++|+ |..+ ++....+........ ....++.+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4554 4444 333444444433210 2377899999999998887
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.04 E-value=15 Score=39.68 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=41.7
Q ss_pred CCCCeeEEEEec-------CCCEEEEEe-CCcEEEEECCCceEE---EE-ecCCCCCeeEEEEecCCCcEEEEEECCCCE
Q 001535 830 LEEAVPCIALSK-------NDSYVMSAT-GGKISLFNMMTFKVM---TT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1058)
Q Consensus 830 ~~~~v~~~~~s~-------dg~~la~~~-dg~i~vwd~~~~~~~---~~-~~~~~~~i~~l~~s~~~~~~lasg~~dg~v 897 (1058)
+...+..+.|-. .|+++++.. .+.|....++....+ .. +.....++..+++.| ||.++++-+.+|.|
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVSDDSDGKI 329 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEEE-TTTTE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEEECCCCeE
Confidence 345566677653 445665555 567888887644322 22 223445899999999 89888888888877
Q ss_pred E
Q 001535 898 H 898 (1058)
Q Consensus 898 ~ 898 (1058)
+
T Consensus 330 y 330 (331)
T PF07995_consen 330 Y 330 (331)
T ss_dssp E
T ss_pred e
Confidence 4
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.97 E-value=2.5 Score=46.59 Aligned_cols=139 Identities=15% Similarity=0.110 Sum_probs=80.1
Q ss_pred CCeeEEEEecCCCEEEEEe------------C-CcEEEEECCC--ce--EEEEecCCCCCeeEEEEecCCCcEEEEEECC
Q 001535 832 EAVPCIALSKNDSYVMSAT------------G-GKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (1058)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~------------d-g~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d 894 (1058)
.....|+|.++|+++++-. . +.|.+++-.+ |+ ....+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4466899999999887752 2 3677776543 32 2234433344568899998 77 444 3434
Q ss_pred CCEEEE-EccC-------ceee-eEecc----cCCCeeEEEEcCCCCEEEEEeCC-------------------CcEEEE
Q 001535 895 STIHIY-NVRV-------DEVK-SKLKG----HQKRITGLAFSTSLNILVSSGAD-------------------AQLCVW 942 (1058)
Q Consensus 895 g~v~iw-d~~~-------~~~~-~~~~~----h~~~V~~l~~s~d~~~l~s~s~D-------------------g~i~iw 942 (1058)
.|..| +... .+.+ ..+.. +......++|.|||.+.++.+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34433 4321 1112 22322 23447789999999887765521 345555
Q ss_pred ECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEE
Q 001535 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1058)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~ 981 (1058)
|.++++.. .+ . .+. .....++|+++|.++++-
T Consensus 170 ~pdg~~~e-~~--a--~G~--rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 170 NPDGGKLR-VV--A--HGF--QNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ecCCCeEE-EE--e--cCc--CCCccceECCCCCEEEEc
Confidence 55554421 11 1 111 445789999999998773
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.33 E-value=17 Score=38.35 Aligned_cols=284 Identities=11% Similarity=0.099 Sum_probs=126.8
Q ss_pred eecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCC
Q 001535 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1058)
Q Consensus 340 ~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1058)
.++-...+..|+|..+.. -.|+|. .+. |+....|-.. |+.... ..-..-.-...+|.|..+ .
T Consensus 12 ~l~t~~~l~dV~F~d~~~-G~~VG~-~g~--il~T~DGG~t-------W~~~~~------~~~~~~~~~l~~I~f~~~-~ 73 (302)
T PF14870_consen 12 SLPTDKPLLDVAFVDPNH-GWAVGA-YGT--ILKTTDGGKT-------WQPVSL------DLDNPFDYHLNSISFDGN-E 73 (302)
T ss_dssp E-S-SS-EEEEEESSSS--EEEEET-TTE--EEEESSTTSS--------EE-----------S-----EEEEEEEETT-E
T ss_pred ecCCCCceEEEEEecCCE-EEEEec-CCE--EEEECCCCcc-------cccccc------CCCccceeeEEEEEecCC-c
Confidence 344566899999995554 567775 443 4444444322 111000 000001224667777643 3
Q ss_pred EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCee-EEeecccCCee
Q 001535 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVY 498 (1058)
Q Consensus 420 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~ 498 (1058)
.+++| ..+ +.+...+.|+.-..+..-..-.+....+....++. ..+. +..|.|+.=...|+.= .....-.+.+.
T Consensus 74 g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l~-~~~G~iy~T~DgG~tW~~~~~~~~gs~~ 148 (302)
T PF14870_consen 74 GWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AELA-GDRGAIYRTTDGGKTWQAVVSETSGSIN 148 (302)
T ss_dssp EEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEEE-ETT--EEEESSTTSSEEEEE-S----EE
T ss_pred eEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEEE-cCCCcEEEeCCCCCCeeEcccCCcceeE
Confidence 44444 455 44555555655443221011123344454444544 3333 4455544333334332 22333445667
Q ss_pred EEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEe-CCCCcee
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIK 577 (1058)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~ 577 (1058)
.+.. .+||.+++++.......-||.-...-...-......|.+|.|+|++...+.+. .+.|+.=+ ....+.-
T Consensus 149 ~~~r--~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-----Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 149 DITR--SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-----GGQIQFSDDPDDGETW 221 (302)
T ss_dssp EEEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-----TTEEEEEE-TTEEEEE
T ss_pred eEEE--CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-----CcEEEEccCCCCcccc
Confidence 7665 45788888887777777886543333334444567999999999988777652 66777766 2222211
Q ss_pred ee--eec-ccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCCCCceEEeeCCCCEEEEEECCCcE
Q 001535 578 RT--YAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1058)
Q Consensus 578 ~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i 653 (1058)
.. ... .....+..+++.+++...++|+ .|.+ +...+.|+.-..... ..-......+.|.++.+-++.| .+|.+
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~l 298 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVL 298 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEE
Confidence 11 111 1122356688988766665554 5544 345556665544432 1112246788887665555554 56665
Q ss_pred EEE
Q 001535 654 KIL 656 (1058)
Q Consensus 654 ~iw 656 (1058)
.-|
T Consensus 299 l~~ 301 (302)
T PF14870_consen 299 LRY 301 (302)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.44 Score=32.52 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=26.3
Q ss_pred CcEEEEEeecCCC--eEEEEEeccceEEEEEccC
Q 001535 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAM 376 (1058)
Q Consensus 345 ~~V~~v~~sp~g~--~lla~gs~dg~i~iwd~~~ 376 (1058)
++|.+|.|||... -+||..-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998543 4788888889999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.81 E-value=2.6 Score=50.44 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=65.9
Q ss_pred CCCeeEEEEecCCC--EEEEEeCCcEEEEECCCceEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceee
Q 001535 831 EEAVPCIALSKNDS--YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1058)
Q Consensus 831 ~~~v~~~~~s~dg~--~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~ 908 (1058)
.....++.|.|.-. .++...|+.|+|..+........-..-....+|++|+| .|+.+++|...|++.-|... .+..
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik 232 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIK 232 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-ccee
Confidence 34455677777432 33444488888877653322211112345689999999 99999999999999888743 4333
Q ss_pred eEecc----cCCCeeEEEEcCCCCEEEEE
Q 001535 909 SKLKG----HQKRITGLAFSTSLNILVSS 933 (1058)
Q Consensus 909 ~~~~~----h~~~V~~l~~s~d~~~l~s~ 933 (1058)
..+.+ ....|.+|+|-....++++-
T Consensus 233 ~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 233 SEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 33322 13679999998877777754
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.71 E-value=10 Score=41.01 Aligned_cols=164 Identities=11% Similarity=0.155 Sum_probs=93.8
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCC------EEEEEccC--c-----eee--eEecccCC--------CeeEEEEcCCCC
Q 001535 872 PPASTFLAFHPQDNNIIAIGTEDST------IHIYNVRV--D-----EVK--SKLKGHQK--------RITGLAFSTSLN 928 (1058)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~dg~------v~iwd~~~--~-----~~~--~~~~~h~~--------~V~~l~~s~d~~ 928 (1058)
-+.++.+.+.+.++++ ++.+++|. ++.+++.. + +.. ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~-~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRF-YAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEE-EEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3457888998635554 44566776 66555543 1 000 11211112 334788888899
Q ss_pred EEEEEeCC------CcEEEEECCCCceeceEEEecC---------CCCCCCCceEEEEcCCCCEEEEE------ECC---
Q 001535 929 ILVSSGAD------AQLCVWSIDTWEKRKSVTIHIP---------AGKTPTGDTRVQFNADQVRMLVV------HET--- 984 (1058)
Q Consensus 929 ~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~v~~l~~s~d~~~l~~~------~d~--- 984 (1058)
++++.=.+ ..|+.++.+ |+....+.+... ........-+++++|||+.|++. .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 98887777 778888877 666555433221 11122678899999999955553 232
Q ss_pred --------eEEEEECCC-CeeeeeeccCCC------CCCCEEEEEEccCCCEEEEEe-----CCCcEEEEeCC
Q 001535 985 --------QLAIYDASK-MERIRQWTPQDA------LSAPISCAVYSCNSQLVFATF-----CDGNIGVFDAD 1037 (1058)
Q Consensus 985 --------~v~v~d~~~-~~~~~~~~~~~~------~~~~v~~l~~s~dg~~l~t~~-----~dg~i~iw~~~ 1037 (1058)
.+..||..+ +.....+.-.-. ....++.+.+-+|+++|+.== ....++++.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 233455554 323333221111 257889999999999777522 23455555443
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.45 E-value=9.8 Score=43.88 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=52.2
Q ss_pred EEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCC
Q 001535 920 GLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 994 (1058)
Q Consensus 920 ~l~~s~d~~~l~s~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~ 994 (1058)
.++|-|.|..+++-+.||. |.++.-+.-+ -..+....... ..+..++|.-....++++..+.+.+|-.++-
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr-HGef~lr~~~d---Ek~~~~~wn~~s~vlav~~~n~~~lwttkNy 326 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR-HGEFDLRVGCD---EKAFLENWNLLSTVLAVAEGNLLKLWTTKNY 326 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcc-cCCccccCCch---hhhhhhhhhHHHHHHHHhhcceEEEEEccce
Confidence 3789999999999887753 5555544311 01111111111 3445666766666677778888999998765
Q ss_pred eeeeeeccCCCCCCCEEEEEEccC
Q 001535 995 ERIRQWTPQDALSAPISCAVYSCN 1018 (1058)
Q Consensus 995 ~~~~~~~~~~~~~~~v~~l~~s~d 1018 (1058)
.-....... -..+.-+.|.|.
T Consensus 327 hWYLK~e~~---ip~~s~vkwhpe 347 (1243)
T COG5290 327 HWYLKVERQ---IPGISYVKWHPE 347 (1243)
T ss_pred EEEEEEeec---CCCcceeeeccc
Confidence 432222111 233455566654
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.46 Score=43.17 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=45.9
Q ss_pred hhHHHHHHhHHhHhhhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhh
Q 001535 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQL 130 (1058)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 130 (1058)
.++|.++-+.||||+..|..++|..++.+--.-+.....+++++|..+........++..
T Consensus 28 ~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~ 87 (133)
T cd08044 28 QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELA 87 (133)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHH
Confidence 399999999999999999999999999865444444456778888777666655555443
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.26 E-value=13 Score=43.59 Aligned_cols=115 Identities=8% Similarity=0.080 Sum_probs=74.8
Q ss_pred ceEEEEECC--CCCEEEEEeCCCeEEEEEecC-------C----------CcceeeeeecccccCeEEEEee--cCCCee
Q 001535 408 SVSRVAWSP--DGNYVGVAFTKHLIQLYSYAG-------S----------NDLRQHSQIDAHVGAVNDLAFA--YPNKLL 466 (1058)
Q Consensus 408 ~V~~l~~sp--dg~~las~~~dg~i~iwd~~~-------~----------~~~~~~~~l~~h~~~v~~l~~s--~d~~~~ 466 (1058)
.|+.+.... +...|+.|.+||.|.+|.+++ . ..++....+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 466665544 567899999999999996521 0 0011222222 34479999998 6565
Q ss_pred EEEEEeCCCcEEEEe--c-CCCeeE-EeecccCCeeEEeecccCC---ce-EEEEEeeCCeEEEEec
Q 001535 467 CVVTCGDDKLIKVWE--L-SGRKLF-NFEGHEAPVYSICPHHKEN---IQ-FIFSTAIDGKIKAWLY 525 (1058)
Q Consensus 467 ~l~s~~~d~~i~iwd--~-~~~~~~-~~~~h~~~v~~~~~~~~~~---~~-~l~s~~~dg~i~~wd~ 525 (1058)
++|.++....|.||- . +.+... .-..|...|-+|+|.+... |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 788888888888886 2 122111 1113566788999876652 32 7888999999998877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.92 Score=31.01 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=26.9
Q ss_pred cceEEEEECCC-C--CEEEEEeCCCeEEEEEecCC
Q 001535 407 ISVSRVAWSPD-G--NYVGVAFTKHLIQLYSYAGS 438 (1058)
Q Consensus 407 ~~V~~l~~spd-g--~~las~~~dg~i~iwd~~~~ 438 (1058)
+.|.+++|||+ + ++|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58888888899999999863
|
It contains a characteristic DLL sequence motif. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.18 Score=57.91 Aligned_cols=200 Identities=10% Similarity=0.123 Sum_probs=106.3
Q ss_pred CCCCeeEEEEecC-CCEEEEEeCCcEEEEECC--CceEEEEe-----cCCCCCeeEEEEecC--CCcEEEEEECCCCEEE
Q 001535 830 LEEAVPCIALSKN-DSYVMSATGGKISLFNMM--TFKVMTTF-----MSPPPASTFLAFHPQ--DNNIIAIGTEDSTIHI 899 (1058)
Q Consensus 830 ~~~~v~~~~~s~d-g~~la~~~dg~i~vwd~~--~~~~~~~~-----~~~~~~i~~l~~s~~--~~~~lasg~~dg~v~i 899 (1058)
..+.+-.++|... -..++ -.-|.+.|||+. .|+....+ ......+.-+.|.|. +.-++..+..+++|++
T Consensus 131 f~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 4555666666431 11111 113678888875 34322221 112223344444431 4567777888889988
Q ss_pred EEccCceeeeEecccCCCeeEEE-----------EcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceE
Q 001535 900 YNVRVDEVKSKLKGHQKRITGLA-----------FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 968 (1058)
Q Consensus 900 wd~~~~~~~~~~~~h~~~V~~l~-----------~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 968 (1058)
..+.+... ..+.+|...++.++ .||||+.+|.++.||.++.|.+--...+.....+....|...+-.+
T Consensus 210 L~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC 288 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVC 288 (1283)
T ss_pred eeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCcee
Confidence 77665432 34556877666654 4899999999999999998877532222222333333332122222
Q ss_pred EEEcCC-------CC--EEEEE--ECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCE------------EEEE
Q 001535 969 VQFNAD-------QV--RMLVV--HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL------------VFAT 1025 (1058)
Q Consensus 969 l~~s~d-------~~--~l~~~--~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~------------l~t~ 1025 (1058)
..|..+ +. +++++ .+..+++|.....+|..... -..|..+. -+||+. ++.-
T Consensus 289 ~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r 362 (1283)
T KOG1916|consen 289 WLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSR 362 (1283)
T ss_pred eeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHHHh
Confidence 223332 22 23333 25668899887777763221 12344444 344441 3345
Q ss_pred eCCCcEEEEeCC
Q 001535 1026 FCDGNIGVFDAD 1037 (1058)
Q Consensus 1026 ~~dg~i~iw~~~ 1037 (1058)
+-|++|.+|.-.
T Consensus 363 ~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 363 SVDGTIKIWQNR 374 (1283)
T ss_pred hhHHHHHHhhcc
Confidence 567888888543
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.084 Score=56.38 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=98.2
Q ss_pred EEEEEecCcceEEEeeccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEE
Q 001535 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1058)
Q Consensus 768 ~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1058)
....+.+.+..++.++.+..+..||-.. +.+. ..........+++..+|..++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~l----e~n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVIL----ELNPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceec----ccCCchhHhhhhhccccchhh
Confidence 4456777777788888888888776221 1111 011344556678888887776
Q ss_pred EEe--CCcEEEEECCCceEEEEec-CCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEc
Q 001535 848 SAT--GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (1058)
Q Consensus 848 ~~~--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 924 (1058)
... .+.+.+||+.+..-- .+. +....-.-+.|++ +...++.|...|.+.|++..+.+.+-..-.|..+++++++.
T Consensus 91 vlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 654 688999999754221 121 1222223378999 89999999999999999988877665555599999999999
Q ss_pred CCCCEEEEEeCCCcEEEE
Q 001535 925 TSLNILVSSGADAQLCVW 942 (1058)
Q Consensus 925 ~d~~~l~s~s~Dg~i~iw 942 (1058)
+.+ +.+.++.|..+.+-
T Consensus 169 lEd-~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 169 LED-YVILCDCDNTLSVT 185 (615)
T ss_pred ccc-eeeecCcHHHHHHh
Confidence 976 45556666555443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.02 E-value=4 Score=38.98 Aligned_cols=111 Identities=9% Similarity=0.045 Sum_probs=67.0
Q ss_pred CceEEEEEeeCC--eEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeeccc
Q 001535 507 NIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1058)
Q Consensus 507 ~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1058)
+|.++.+.+.-| .|++||+++++...........+..=-...-|..+..-.. +++.-..+|.++.+.+..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 456777766544 6899999988777655444222211111122333333332 47888889999888887776544
Q ss_pred CcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEec
Q 001535 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1058)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 624 (1058)
.+ -....|+..|+.+....+++.-|.++.....++.
T Consensus 132 eG----WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~ 167 (262)
T COG3823 132 EG----WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQ 167 (262)
T ss_pred cc----eeeecCCcceEeeCCceEEEecCHHHhhhcceEE
Confidence 31 1234566678877777788888877765554443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=90.88 E-value=25 Score=37.46 Aligned_cols=210 Identities=12% Similarity=-0.011 Sum_probs=103.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCc--EEEEECCCceE---------------EEEecCCCCCeeEEEEecCCCcEEEEEE
Q 001535 830 LEEAVPCIALSKNDSYVMSATGGK--ISLFNMMTFKV---------------MTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~--i~vwd~~~~~~---------------~~~~~~~~~~i~~l~~s~~~~~~lasg~ 892 (1058)
+...|+++.+.+..+.|++-++.. ++++++..-.. ....-++.................+.+.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888888766 99999843221 0111133333333444431222334444
Q ss_pred CCCCEEEEEccCc----eeeeEe---c-ccCCCeeEEEEcCC--CCEEEEEeCCCcEEEEECCC--Cceec-eEEEecCC
Q 001535 893 EDSTIHIYNVRVD----EVKSKL---K-GHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDT--WEKRK-SVTIHIPA 959 (1058)
Q Consensus 893 ~dg~v~iwd~~~~----~~~~~~---~-~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~--~~~~~-~~~~~~~~ 959 (1058)
...+|.++..... .....+ . .-..++..+..+++ ...+..|+..+...++++.. ..... ........
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 5567777654322 111110 0 01123444433433 45677776643355555533 11100 00000000
Q ss_pred CCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001535 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1058)
Q Consensus 960 ~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~ 1039 (1058)
.. ....++..-+++.+|++-++ ...+.|.......+.....- .....++++. ..+|++-. +..|.|+++.++
T Consensus 201 ~~--~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~w--~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 201 TS--LKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRRSRNPILHW--EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred cc--cCceEEEEECCCeEEEEECc-EEEEEeCCCCccccceEEEc--CCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 00 02333444445555555443 34444443212111110000 3455677766 45777665 566999999999
Q ss_pred eEEEEEcC
Q 001535 1040 RLRCYIAP 1047 (1058)
Q Consensus 1040 ~~~~~~~~ 1047 (1058)
+++..+..
T Consensus 273 ~l~q~i~~ 280 (302)
T smart00036 273 ELLQELAD 280 (302)
T ss_pred ceEEEEec
Confidence 98887764
|
Unpublished observations. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.83 E-value=20 Score=36.18 Aligned_cols=226 Identities=7% Similarity=0.011 Sum_probs=126.5
Q ss_pred CCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEeeccCeeEEeeeeccccCC
Q 001535 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1058)
Q Consensus 721 ~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~ 800 (1058)
+..+||...+++...+.|--.|-. .++.....+. ....-..+..-|||...++-+..+..+
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~----tGev~~ypLg----~Ga~Phgiv~gpdg~~Witd~~~aI~R----------- 128 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPA----TGEVETYPLG----SGASPHGIVVGPDGSAWITDTGLAIGR----------- 128 (353)
T ss_pred ccCCCCceEEecCccccceecCCC----CCceEEEecC----CCCCCceEEECCCCCeeEecCcceeEE-----------
Confidence 344555555565555555544443 3334444433 223334556667766555544433333
Q ss_pred CCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCC----------cEEEEECCCceEEEEecC
Q 001535 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGG----------KISLFNMMTFKVMTTFMS 870 (1058)
Q Consensus 801 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg----------~i~vwd~~~~~~~~~~~~ 870 (1058)
.+.++....+..+.............|.++|.+-.++..| .|++|+...|
T Consensus 129 ------------~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------- 188 (353)
T COG4257 129 ------------LDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG-------- 188 (353)
T ss_pred ------------ecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC--------
Confidence 2455555555555544456778889999999988887633 2555554322
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEe---cccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001535 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL---KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947 (1058)
Q Consensus 871 ~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~ 947 (1058)
..-..++..| ||.+-.+.-.+..|-..|..++. -..+ .+....-..+--+|.|+.-+|....+.+..+|-...
T Consensus 189 --~gpyGi~atp-dGsvwyaslagnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 189 --GGPYGICATP-DGSVWYASLAGNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred --CCCcceEECC-CCcEEEEeccccceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 2345678888 78777766667777777766652 1222 121122334445677888888777788888887763
Q ss_pred ceeceEEEecCCCCCCCCceEEEEcCCCCEEEE-EECCeEEEEECCCC
Q 001535 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKM 994 (1058)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~-~~d~~v~v~d~~~~ 994 (1058)
..+ ....+ +.. ....++.....++.-+. ...+.|.-+|-++.
T Consensus 265 sW~---eypLP-gs~-arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 265 SWI---EYPLP-GSK-ARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cce---eeeCC-CCC-CCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 311 11111 111 44456666666665554 34455666665543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.81 E-value=13 Score=36.23 Aligned_cols=145 Identities=9% Similarity=0.104 Sum_probs=87.1
Q ss_pred cEEEEEECCCCEEEEEcc--CceeeeEecccCCCeeEEEEcCCCCEEEEEeCC---C---cEEEE---ECCC--Cceece
Q 001535 886 NIIAIGTEDSTIHIYNVR--VDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD---A---QLCVW---SIDT--WEKRKS 952 (1058)
Q Consensus 886 ~~lasg~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D---g---~i~iw---d~~~--~~~~~~ 952 (1058)
..|..+...+.|.+|++. ..+.+.++..- +.|..+.++..|++|+|-=.+ . .+|+| +... ...+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667789999988 34566667643 889999999999999986433 2 45554 3321 111110
Q ss_pred EE-------------------EecCCCCCCCCceEEEEcCCCCEEEEEECCeEEEEECCCCee-ee-----eeccC---C
Q 001535 953 VT-------------------IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER-IR-----QWTPQ---D 1004 (1058)
Q Consensus 953 ~~-------------------~~~~~~~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~-~~-----~~~~~---~ 1004 (1058)
.. +..+. ...+.+++--|-..-|++|.++.+.+|.+..... .. .+... .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl---~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPL---SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEcccccccCCCCccccceEEEEecC---CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 00 00111 1466778888877778888899999998775443 11 11000 0
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001535 1005 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 1005 ~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
..+.....++|. +.++|..+ +-.+++..+.
T Consensus 185 ~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 185 IDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 013345666665 45777666 6777877654
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=90.75 E-value=37 Score=43.44 Aligned_cols=148 Identities=11% Similarity=0.184 Sum_probs=82.7
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
|-..++.|.-+|+|.+ +=. .|+.++.||..... |..- -..-...++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EEe--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 5556777777888874 332 67788888866542 2210 011234555565555666665
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cC--CCe------eEEeecc
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--GRK------LFNFEGH 493 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~--~~~------~~~~~~h 493 (1058)
.++. .+-|+..+.... ..-..+.+...+++|.- .+.++.....+.+|+ .. +.. ...+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 133454443211 12235777888899984 466777667779998 22 211 1223333
Q ss_pred cCCeeEEeecccCCceEEEEEeeCCeEEEEecCC
Q 001535 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1058)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1058)
.....+|.++. + .|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~--d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN--D--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC--C--eEEEEeCCCCEEeccccc
Confidence 33556666633 2 688888888887666543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.53 Score=43.29 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=38.9
Q ss_pred hHHHHHHhHHhHhhhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccc
Q 001535 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNF 124 (1058)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 124 (1058)
++|.++-+.||+|+..+..++|..++.+--.-+.....+++++|..+......
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l 92 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHL 92 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHH
Confidence 99999999999999999999999999875555544455667777654444433
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.99 E-value=1.2 Score=44.66 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=53.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeceE-EEe-cCCC------CCCCCceEEEEcCCCCEEEEEECCeEEEEECCCC
Q 001535 923 FSTSLNILVSSGADAQLCVWSIDTWEKRKSV-TIH-IPAG------KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 994 (1058)
Q Consensus 923 ~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~-~~~~------~~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~ 994 (1058)
+..++++|++.+.+|.+++||+.+++..... .+. .... .....|..+.++.+|.-+++-++|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4556889999999999999999998764433 111 1110 2237788899999999888878888999986643
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.52 Score=54.42 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=84.7
Q ss_pred ccccCCCCcceEEee------cCCCcEEEEEe---ecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCccc
Q 001535 327 TWSLDDLPRTVAVSL------HQGSTVISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF 397 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~------~h~~~V~~v~~---sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1058)
+|+++.+.+.+...+ +....+.-|.| -++.- ++..|-.+++|++-++.+...
T Consensus 157 Vy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~-~ic~~~~~~~i~lL~~~ra~~------------------ 217 (1283)
T KOG1916|consen 157 VYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKV-YICYGLKGGEIRLLNINRALR------------------ 217 (1283)
T ss_pred eeehHhhccccccceEEeecCcCCCCcceeeecccccccc-eeeeccCCCceeEeeechHHH------------------
Confidence 777776654432221 13334444444 44555 578888889999887765432
Q ss_pred ccccccCCCcceEEEE-----------ECCCCCEEEEEeCCCeEEEEEec-CC-Ccceeeeeeccccc-CeEEEEeecC-
Q 001535 398 QASIFKDVPISVSRVA-----------WSPDGNYVGVAFTKHLIQLYSYA-GS-NDLRQHSQIDAHVG-AVNDLAFAYP- 462 (1058)
Q Consensus 398 ~~~~~~~h~~~V~~l~-----------~spdg~~las~~~dg~i~iwd~~-~~-~~~~~~~~l~~h~~-~v~~l~~s~d- 462 (1058)
.++.+|...+..++ .||||+.+|.++.||.++.|.+. +| ...++.+..+.|++ +-.|.-|..+
T Consensus 218 --~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~ 295 (1283)
T KOG1916|consen 218 --SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQE 295 (1283)
T ss_pred --HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeecccc
Confidence 12555766666554 59999999999999999999864 22 33445556677773 3223223322
Q ss_pred ------CCeeEEEEEeC-CCcEEEEe-cCCCee
Q 001535 463 ------NKLLCVVTCGD-DKLIKVWE-LSGRKL 487 (1058)
Q Consensus 463 ------~~~~~l~s~~~-d~~i~iwd-~~~~~~ 487 (1058)
+.+.+++++++ ...+++|. ..-+|+
T Consensus 296 ~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 296 ILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 23334455443 45699999 666665
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.88 E-value=32 Score=38.60 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=61.1
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCCEEEEEccCce--eeeEec-----ccCCCeeEEEEcCCC------CEEEEEe-C--
Q 001535 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKSKLK-----GHQKRITGLAFSTSL------NILVSSG-A-- 935 (1058)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~--~~~~~~-----~h~~~V~~l~~s~d~------~~l~s~s-~-- 935 (1058)
-.....|+|.| |+++|++--..|.|++++-.++. .+..+. ...+....|+++|+- .+|.... .
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34567899999 88887766556999999865542 221111 125678899999884 2333221 1
Q ss_pred -------CCcEEEEECCCC--ce--eceEEEecCCCCCCCCceEEEEcCCCCEEEEEEC
Q 001535 936 -------DAQLCVWSIDTW--EK--RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 983 (1058)
Q Consensus 936 -------Dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d 983 (1058)
...|.-|.+... .. ...+....+... .-.-..|+|.|||.++++..|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~-~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN-DHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC-CcCCceEEECCCCcEEEEECC
Confidence 223444555421 11 111111111111 123467889999987776433
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=89.85 E-value=16 Score=41.86 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=69.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEEEE--------------CCeE
Q 001535 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--------------ETQL 986 (1058)
Q Consensus 921 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--------------d~~v 986 (1058)
+...++|.+++..+ ..++.+|+. |+......+.... ..--..+..-|+|.+|+.+. +..|
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~---~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~I 226 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY---YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVI 226 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE---E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc---cccccccEECCCCCEEEEEeecccccCCCCccEecCEE
Confidence 66678898887665 678888886 4444443333210 01114688889999888764 2346
Q ss_pred EEEECCCCeeeeeeccCCCC------------------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeE
Q 001535 987 AIYDASKMERIRQWTPQDAL------------------------SAPISCAVYSC-NSQLVFATFCDGNIGVFDADTLRL 1041 (1058)
Q Consensus 987 ~v~d~~~~~~~~~~~~~~~~------------------------~~~v~~l~~s~-dg~~l~t~~~dg~i~iw~~~~~~~ 1041 (1058)
..+| .+|+.+..|...+.. -..+.++.+.+ ++.+++++-.-..|...|..+++.
T Consensus 227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 7777 778777665433210 13578999988 566666665566899999999999
Q ss_pred EEEEcCccccCC
Q 001535 1042 RCYIAPSTYLSP 1053 (1058)
Q Consensus 1042 ~~~~~~~~~~~~ 1053 (1058)
.-.+.++..-+.
T Consensus 306 ~Wilg~~~~w~~ 317 (477)
T PF05935_consen 306 KWILGPPGGWNG 317 (477)
T ss_dssp EEEES-STT--T
T ss_pred EEEeCCCCCCCc
Confidence 999987755443
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.83 E-value=13 Score=40.63 Aligned_cols=152 Identities=10% Similarity=0.104 Sum_probs=93.8
Q ss_pred eEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeecccCCeeEEeecccC------CceEEEEEeeCCeEEEEecC
Q 001535 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLYD 526 (1058)
Q Consensus 454 v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~~wd~~ 526 (1058)
+.-+....+...+++..|+....++-.| ..|+.+..+..|...| +.+.|.. +.+.| .|-.+..|.-.|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceE-EeecccceEEeccc
Confidence 3444444445555666777778888888 8899999888887653 3443321 12334 45555556556666
Q ss_pred CCCceEEeeCCCCcEEEEEEc----cCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEE
Q 001535 527 TMGSRVDYDAPGHWCTTMLYS----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA 602 (1058)
Q Consensus 527 ~~~~~~~~~~~~~~i~~i~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 602 (1058)
..+............+.-.|+ ....++++++. .|-|++||.-..+....+++... .|-.+..+.+|.++++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ila 620 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILA 620 (776)
T ss_pred ccCCceeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEE
Confidence 555333322222222222222 23447888874 77899999765555555666555 7778889999999998
Q ss_pred EeCCCcEEEEEC
Q 001535 603 VGEDSQIKFWDM 614 (1058)
Q Consensus 603 ~~~dg~i~vwd~ 614 (1058)
.+.. .+.+-|+
T Consensus 621 TCk~-yllL~d~ 631 (776)
T COG5167 621 TCKN-YLLLTDV 631 (776)
T ss_pred eecc-eEEEEec
Confidence 8865 5666665
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.69 E-value=13 Score=43.74 Aligned_cols=111 Identities=13% Similarity=0.270 Sum_probs=72.4
Q ss_pred CCeeEEEEec--CCCEEEEEe-CCcEEEEECCC-------c----e---------EEEEecCCCCCeeEEEEe--cCCCc
Q 001535 832 EAVPCIALSK--NDSYVMSAT-GGKISLFNMMT-------F----K---------VMTTFMSPPPASTFLAFH--PQDNN 886 (1058)
Q Consensus 832 ~~v~~~~~s~--dg~~la~~~-dg~i~vwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--~~~~~ 886 (1058)
..|..|.+.. +...|+.+. ||.|.+|.+++ . + +...+. -...+..+++. . ..+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSR 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cce
Confidence 3355554443 445666665 89999997631 1 0 111121 23467889998 6 788
Q ss_pred EEEEEECCCCEEEEEccCc--ee-eeEecccCCCeeEEEEcCCC-----C-EEEEEeCCCcEEEEEC
Q 001535 887 IIAIGTEDSTIHIYNVRVD--EV-KSKLKGHQKRITGLAFSTSL-----N-ILVSSGADAQLCVWSI 944 (1058)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~--~~-~~~~~~h~~~V~~l~~s~d~-----~-~l~s~s~Dg~i~iwd~ 944 (1058)
+||++++...|.||-.... +. ...-..|...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999998888888876542 11 11111266778899997653 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.63 E-value=4.4 Score=49.75 Aligned_cols=152 Identities=10% Similarity=0.139 Sum_probs=96.2
Q ss_pred ECCCCEEEEEccCceeeeEecccCCCeeEEEE--------cCCCCEEEEEeCCCcEEEEECCCCceeceEE--Eec-CCC
Q 001535 892 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF--------STSLNILVSSGADAQLCVWSIDTWEKRKSVT--IHI-PAG 960 (1058)
Q Consensus 892 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~--------s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~-~~~ 960 (1058)
+-|+.+.+|+..++.....+.+-+..|..|.. .|.=++|...+.--.|.++-+.-.+...... ... .-.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998777777777777777764 3333455555556667777654322211110 000 001
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCeEE--EEECCCC---e-e-------------eeeec-cCCCCCCCEEEEEEccCCC
Q 001535 961 KTPTGDTRVQFNADQVRMLVVHETQLA--IYDASKM---E-R-------------IRQWT-PQDALSAPISCAVYSCNSQ 1020 (1058)
Q Consensus 961 ~~~~~v~~l~~s~d~~~l~~~~d~~v~--v~d~~~~---~-~-------------~~~~~-~~~~~~~~v~~l~~s~dg~ 1020 (1058)
.....|.++....+|+.+++|.||.++ +|....+ + + +..+. ....+..+|..++....-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 112667888888999999999998655 3333322 1 0 00111 1112367999999998888
Q ss_pred EEEEEeCCCcEEEEeCCC-CeEEE
Q 001535 1021 LVFATFCDGNIGVFDADT-LRLRC 1043 (1058)
Q Consensus 1021 ~l~t~~~dg~i~iw~~~~-~~~~~ 1043 (1058)
.+.+-++.|+|.+|++.. |.-..
T Consensus 256 IlY~lsek~~v~~Y~i~~~G~~~~ 279 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNGLGGP 279 (1311)
T ss_pred eeeeeccCceEEEEEccCCCccce
Confidence 999999999999999976 54433
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=17 Score=41.79 Aligned_cols=148 Identities=9% Similarity=0.002 Sum_probs=69.7
Q ss_pred CceEEEEEeeC--CeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeeccc
Q 001535 507 NIQFIFSTAID--GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1058)
Q Consensus 507 ~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1058)
++...+.||.+ ..+..||..+..-...-.............-+|+..+.||.+. ....+..||..+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCC
Confidence 55677777764 3567777654322111111111111122234666667766432 23567788887664432211111
Q ss_pred CcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCCCCEEEEEECC-----CcEEEEEcc
Q 001535 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANA 659 (1058)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~ 659 (1058)
. .....+..-++...+.| |.+.+||..+++....-...... ..+-+..-++++.++|+.+ ..+..||..
T Consensus 397 ~-r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r--~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 P-HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPR--DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred c-cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCc--cccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 1 11111222334444444 35778898776654332222111 1122222367788887754 346666665
Q ss_pred CC
Q 001535 660 IG 661 (1058)
Q Consensus 660 ~~ 661 (1058)
++
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 54
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=89.19 E-value=80 Score=40.75 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=50.0
Q ss_pred ccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCceEEE-EecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEE
Q 001535 825 VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1058)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd 901 (1058)
+.+.. ...|+++|+-.+.++++.-..|.+..+. ..+.++. ...+-.+.|..+++.. ...+ .....+|.++--+
T Consensus 697 l~Gl~-~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~-~~nL-~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 697 LEGLE-DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDE-KQNL-YALTSTGELFRLP 770 (1774)
T ss_pred ccCCC-cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeecc-ccce-eEecCCCceeecC
Confidence 44433 6778999998888887777789999988 5555332 2234567899999987 5444 4456678776544
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.4 Score=29.71 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=23.1
Q ss_pred ecCCCcEEEEEeecCCCeEEEEEecc--ceEEEE
Q 001535 341 LHQGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (1058)
Q Consensus 341 ~~h~~~V~~v~~sp~g~~lla~gs~d--g~i~iw 372 (1058)
......-.+..|||||++++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34556788999999999888777776 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.15 E-value=18 Score=41.78 Aligned_cols=197 Identities=12% Similarity=0.054 Sum_probs=99.3
Q ss_pred CeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEe----ecccCCeeEEeec
Q 001535 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEAPVYSICPH 503 (1058)
Q Consensus 428 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~h~~~v~~~~~~ 503 (1058)
-.|+|+++.+ ..+.. +.-..+.+-.+.|+.+.. |+....||++++++.-|..+... ......|..+.+.
T Consensus 64 ~~I~If~~sG-~lL~~---~~w~~~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGR---ILWKHGELIGMGWSDDEE---LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred eeEEEEeccc-cchHH---HHhcCCCeeeecccCCce---EEEEeccceEEEeecchhhhcccccccccccCceeEEEEe
Confidence 4588888764 33332 222233788999998876 77788899999999666655442 1222334444443
Q ss_pred ccCCceEEEEEeeCCeEEEEecCCCCceEEeeC-CCC--cEEEEEEccCCC--EEEEEeccCCCCceEEEEeCCCCc-ee
Q 001535 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGH--WCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESEGT-IK 577 (1058)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~--~i~~i~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~-~~ 577 (1058)
. +| ++.-..+|.+.+-.-........... +.. ...|-+..+++. .++..-. ..-...++...... ..
T Consensus 137 ~--~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~---~~v~~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 137 H--NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVD---VAVGLHICQVEESRVQL 209 (829)
T ss_pred c--Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeec---hhhhhcccceecccccc
Confidence 2 33 34444445544332111111111111 111 112222222221 1111100 00001111111111 11
Q ss_pred eeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeCC
Q 001535 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1058)
..+.... ..+.-+..+|+.++|+.-..+|.|.+-+.+..+....+....+.. -..++|..+
T Consensus 210 ~~~~~~~-~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgn 270 (829)
T KOG2280|consen 210 HALSWPN-SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGN 270 (829)
T ss_pred cccCCCC-ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecC
Confidence 1111111 256678899999999999999999999988888877776544432 235566544
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.02 E-value=30 Score=35.70 Aligned_cols=204 Identities=13% Similarity=0.110 Sum_probs=116.4
Q ss_pred CeEEEEeecCCCeeEEEEEeCCCcEEEEecC-----CCe---eEEeec-----ccCCeeEEeecccCC----------ce
Q 001535 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-----GRK---LFNFEG-----HEAPVYSICPHHKEN----------IQ 509 (1058)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-----~~~---~~~~~~-----h~~~v~~~~~~~~~~----------~~ 509 (1058)
.-+.|+|+|.+. +-++...-+...+||.. +.. +.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 467899999887 66777777889999932 221 223321 123456666653211 12
Q ss_pred EEEEEeeCCeEEEEecCCCCc-----eEEeeCC--CCcEEEEEEc--cCCCEEEEEeccCCCCceEEEEeCCCCcee--e
Q 001535 510 FIFSTAIDGKIKAWLYDTMGS-----RVDYDAP--GHWCTTMLYS--ADGSRLFSCGTSKDGDSFLVEWNESEGTIK--R 578 (1058)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~--~~~i~~i~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~--~ 578 (1058)
.++.+++||+|.-|....... ...+... ..-...+++. ..+.+|..+-. ..++|.++|-.-.+.. .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 368889999999998543333 1222211 2223344444 33567766654 4788888885433221 1
Q ss_pred eeeccc---C-cceeE--------EE---EcCCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCCCCceEEeeC----
Q 001535 579 TYAGFR---K-KSNGV--------VQ---FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---- 639 (1058)
Q Consensus 579 ~~~~~~---~-~~i~~--------~~---~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 639 (1058)
.+.... + .+... +. -.++...=+.|..-|.|-+||. .|+.+..+...+.-..-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 111100 0 00010 11 1112222223334578999997 677888776555555567777755
Q ss_pred --CCCEEEEEECCCcEEEEEccCCc
Q 001535 640 --EGNLLAVTTADNGFKILANAIGL 662 (1058)
Q Consensus 640 --~~~~l~~~~~dg~i~iw~~~~~~ 662 (1058)
.+.+|+---.||+|..+|..++.
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCc
Confidence 46677777779999999998874
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=88.92 E-value=67 Score=39.52 Aligned_cols=159 Identities=12% Similarity=0.137 Sum_probs=102.5
Q ss_pred CCCCeeEEEEe---c----CCCEEEEEeCCcEEEEEC------CC---------ceEEEEecC---CCCCeeEEEEecCC
Q 001535 830 LEEAVPCIALS---K----NDSYVMSATGGKISLFNM------MT---------FKVMTTFMS---PPPASTFLAFHPQD 884 (1058)
Q Consensus 830 ~~~~v~~~~~s---~----dg~~la~~~dg~i~vwd~------~~---------~~~~~~~~~---~~~~i~~l~~s~~~ 884 (1058)
...+|..|+|+ . ..++|++-....+.|+.. .. ..++..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 56788888887 2 235888877778888772 11 123344432 23357789999988
Q ss_pred CcEEEEEECCCCEEEEEccCce-----eeeEecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001535 885 NNIIAIGTEDSTIHIYNVRVDE-----VKSKLKGHQ----------KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1058)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~-----~~~~~~~h~----------~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~ 949 (1058)
.+.+|+....|...||++.... .......+. +.-..+.|.++-+.|+.++.. .+.++|+++...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCc
Confidence 8899999999999999992211 111111111 233478898888888877654 589999998764
Q ss_pred eceEEEecCCCCCCCCceEEEEcCCC-CEEEEEECCeEEEEECCC
Q 001535 950 RKSVTIHIPAGKTPTGDTRVQFNADQ-VRMLVVHETQLAIYDASK 993 (1058)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~~~~d~~v~v~d~~~ 993 (1058)
... .........|..+.-+++. .++++-....|...++..
T Consensus 237 ~~~----l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEY----LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cch----hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 332 1122223778888888872 333333456777778776
|
These proteins are found in fungi. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=88.89 E-value=11 Score=43.09 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=56.4
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCC
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 484 (1058)
....++++.-.|.|..++.+..||+|++|++.....-+ +-....+-..+.|...| +++...|..+.-|..+|
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheeeccC
Confidence 34567788888999999999999999999987643321 22223344556677655 56777788888999888
Q ss_pred CeeEEee
Q 001535 485 RKLFNFE 491 (1058)
Q Consensus 485 ~~~~~~~ 491 (1058)
...+.|.
T Consensus 85 vvqqqfd 91 (1636)
T KOG3616|consen 85 VVQQQFD 91 (1636)
T ss_pred cchhhcc
Confidence 6665554
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.87 E-value=19 Score=35.19 Aligned_cols=50 Identities=12% Similarity=0.359 Sum_probs=36.4
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeeEeccCCCCCCCceEEeeCCCCEEEEEECC
Q 001535 598 NHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1058)
Q Consensus 598 ~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 650 (1058)
..|+.+...+.|.+|++. ..+....+..- +.|..+.++..|+++++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEee
Confidence 455555677789999988 34455555443 468999999999999987543
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.4 Score=46.75 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=93.9
Q ss_pred eEEEEecCCCCCeeEEEEecCCCcEEEEEECCCCEEEEEccCceee-eEe-cccCC----Cee-EEEEcCCCCEEEEEeC
Q 001535 863 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKL-KGHQK----RIT-GLAFSTSLNILVSSGA 935 (1058)
Q Consensus 863 ~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~-~~~-~~h~~----~V~-~l~~s~d~~~l~s~s~ 935 (1058)
+.+..+......+..+-..| ||+.|.+-+. .++.++++.+.... .++ ....+ .|+ .+..-..|.-|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 33444555666788899999 9998877665 68888888765321 111 11111 222 2222345667778889
Q ss_pred CCcEEEE-ECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEEE-EECCeEEEEECCCCeeeeeeccCCCCCCCEEEE
Q 001535 936 DAQLCVW-SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCA 1013 (1058)
Q Consensus 936 Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l 1013 (1058)
||.|.-| |+..+............ -.+.++..+.-..+.+-+++ ...|.+.++.....+.+..-.. .....-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~-l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~----~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFK-LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA----YQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccc-cCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh----hcCccee
Confidence 9988776 65543321111111110 01122222222222222333 3566676665544443332222 2356788
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 001535 1014 VYSCNSQLVFATFCDGNIGVFDADTLRL 1041 (1058)
Q Consensus 1014 ~~s~dg~~l~t~~~dg~i~iw~~~~~~~ 1041 (1058)
++||.+.+|++-. .|.++++.+++-..
T Consensus 364 ~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheeec-CCceEEEEecCCCC
Confidence 9999999988654 77899998876543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.77 E-value=2.8 Score=40.34 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.3
Q ss_pred cceEEEEECCCC------CEEEEEeCCCeEEEEEecC
Q 001535 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (1058)
Q Consensus 407 ~~V~~l~~spdg------~~las~~~dg~i~iwd~~~ 437 (1058)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999953 3788889999999997654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.75 E-value=39 Score=36.62 Aligned_cols=279 Identities=10% Similarity=0.075 Sum_probs=130.2
Q ss_pred CCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEE
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1058)
-...+.+|+|..... .+|+|. +|. ||....+-.. |...... +......+.++.|.++ ..++
T Consensus 44 ~~~~l~~v~F~d~~~-g~avG~-~G~--il~T~DgG~t-------W~~~~~~-------~~~~~~~l~~v~~~~~-~~~~ 104 (334)
T PRK13684 44 TEANLLDIAFTDPNH-GWLVGS-NRT--LLETNDGGET-------WEERSLD-------LPEENFRLISISFKGD-EGWI 104 (334)
T ss_pred CCCceEEEEEeCCCc-EEEEEC-CCE--EEEEcCCCCC-------ceECccC-------CcccccceeeeEEcCC-cEEE
Confidence 355789999986655 577774 443 4444333221 1110000 1112334777888654 3444
Q ss_pred EEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEee-cccCCeeEEe
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~ 501 (1058)
+| ..+.|.. ..+.|+.......-....+....+....++. .++ ++..|.|..=+..|+.=..+. .-...+.++.
T Consensus 105 ~G-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~-~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~ 179 (334)
T PRK13684 105 VG-QPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEM-ATNVGAIYRTTDGGKNWEALVEDAAGVVRNLR 179 (334)
T ss_pred eC-CCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--cee-eeccceEEEECCCCCCceeCcCCCcceEEEEE
Confidence 44 4443222 2233333332211000111122222222232 233 334454433333333322222 2245677777
Q ss_pred ecccCCceEEEEEeeCCeEEEEecCCCCceE--EeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeee
Q 001535 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1058)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1058)
+.+ ++.++ ..+..|.+.. ..+.+.... ........+.++.+.++++.++++. .+.+.+=..+.|..-..
T Consensus 180 ~~~--~g~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 180 RSP--DGKYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSK 250 (334)
T ss_pred ECC--CCeEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCcccc
Confidence 754 55444 4445555432 112222212 2223345789999999998877764 45444323344432221
Q ss_pred eecc---cCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCCCCceEEeeCCCCEEEEEECCCcEEE
Q 001535 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1058)
Q Consensus 580 ~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 655 (1058)
...+ ....+..+.+.+++. +++++.+|.+. .....|+.-..... ..-......+.|..+++.+++ +..|.|--
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEE
Confidence 1111 112456678888765 45556677665 34455554444322 111124567777766666554 45677665
Q ss_pred EE
Q 001535 656 LA 657 (1058)
Q Consensus 656 w~ 657 (1058)
|+
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 54
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.74 E-value=6.1 Score=48.56 Aligned_cols=171 Identities=12% Similarity=0.202 Sum_probs=96.8
Q ss_pred CCCCcceEEeecCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceE
Q 001535 331 DDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1058)
Q Consensus 331 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1058)
.+.|..+...+.|...=+.+-+=|.=.+.-+| .|+.+.+|+++++..... +.+-+..|.
T Consensus 65 ~~IP~el~eq~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtIl 123 (1311)
T KOG1900|consen 65 VNIPDELLEQFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTIL 123 (1311)
T ss_pred ccCCHHHHHHhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhhe
Confidence 34444455555555555555555553334444 689999999998654432 333444444
Q ss_pred EEE--------ECCCCCEEEEEeCCCeEEEEEecCCCcceee------eeecccccCeEEEEeecCCCeeEEEEEeCCCc
Q 001535 411 RVA--------WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1058)
Q Consensus 411 ~l~--------~spdg~~las~~~dg~i~iwd~~~~~~~~~~------~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 476 (1058)
.|. |-|.=++++....--.|.++-+.-.+..... ..+....-.|+++....+|+ .+++| .||.
T Consensus 124 ~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G-~dg~ 200 (1311)
T KOG1900|consen 124 KVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAG-RDGN 200 (1311)
T ss_pred eeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEee-cCCC
Confidence 443 3333345554444555777655422211111 12223356789999888887 55554 5664
Q ss_pred EEE--Ee-cCC---C-e----------------eEEee-cccCCeeEEeecccCCceEEEEEeeCCeEEEEecCC
Q 001535 477 IKV--WE-LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1058)
Q Consensus 477 i~i--wd-~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1058)
|+- |. .+| + + +..+. .+.++|..+++.. ....+.+-+..|+|.+||+..
T Consensus 201 lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 201 LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 432 11 121 1 1 11223 5677899998843 446889999999999999865
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=88.56 E-value=64 Score=38.85 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=54.9
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEECCC----------ceE--E-EEe--------cCCCCCeeEEEEecC--CCc
Q 001535 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMT----------FKV--M-TTF--------MSPPPASTFLAFHPQ--DNN 886 (1058)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~----------~~~--~-~~~--------~~~~~~i~~l~~s~~--~~~ 886 (1058)
....|..+.++++|+++|..+...|.|..+.. |+. . +++ ..+...|..+.|+|. ++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 45679999999999999998876666665532 111 1 111 123456899999993 257
Q ss_pred EEEEEECCCCEEEEEccCc
Q 001535 887 IIAIGTEDSTIHIYNVRVD 905 (1058)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~ 905 (1058)
.|++-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888999999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.48 E-value=55 Score=36.87 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=47.3
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCC
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1058)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 484 (1058)
...+|..+.+...|. +-+|+.|| +..||..+++.+... ......+|..+.-.-.|+ +..|+.+ -|++.+..|
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdq-Gv~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQ-GVYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEecc-ceEEEchhh
Confidence 356888899988885 44577777 778888887755421 112235677777777776 6667644 466666555
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.17 E-value=38 Score=39.17 Aligned_cols=153 Identities=9% Similarity=0.033 Sum_probs=90.6
Q ss_pred eeEEEEecCCCcEEEEEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeceE
Q 001535 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKSV 953 (1058)
Q Consensus 875 i~~l~~s~~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~-~~~~~~~ 953 (1058)
..+++.|+ ++..+|....++.++++... +.....+. ...++.-.|.++| ++-++..+...++..... |+. ...
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~-~~v 409 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG-HPV 409 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCce-EEe
Confidence 37889999 88888888778888887655 22222222 2346777888887 554544433455555433 333 222
Q ss_pred EEecCCCCCCCCceEEEEcCCCCEEEEEE----CCeEEEEECCC-Ce---ee-ee-eccCCCCCCCEEEEEEccCCCEEE
Q 001535 954 TIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDASK-ME---RI-RQ-WTPQDALSAPISCAVYSCNSQLVF 1023 (1058)
Q Consensus 954 ~~~~~~~~~~~~v~~l~~s~d~~~l~~~~----d~~v~v~d~~~-~~---~~-~~-~~~~~~~~~~v~~l~~s~dg~~l~ 1023 (1058)
...... ...|..+..|+||-.++.-. .++|.|--+.. +. .+ .. ...... ...+.++.|..++.+++
T Consensus 410 ~v~~~~---~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~laV 485 (557)
T PRK13615 410 AVSWTA---TGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDVAT 485 (557)
T ss_pred eccccC---CCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEEEE
Confidence 232222 26799999999999988842 35666533322 22 22 11 111111 34889999999999766
Q ss_pred EEe---CCCcEEEEeCC
Q 001535 1024 ATF---CDGNIGVFDAD 1037 (1058)
Q Consensus 1024 t~~---~dg~i~iw~~~ 1037 (1058)
.+. .+..+++..+.
T Consensus 486 l~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 486 LTLAPDGERQVELHQVG 502 (557)
T ss_pred EeccCCCCceEEEEECC
Confidence 653 33456666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=86.73 E-value=11 Score=43.12 Aligned_cols=90 Identities=10% Similarity=0.141 Sum_probs=59.6
Q ss_pred EEccCceeeeEecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEecCCCCCCCCceEEEEcCCCCEEE
Q 001535 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979 (1058)
Q Consensus 900 wd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 979 (1058)
.|+-.|..... -.|.+.|--+..+..+..|+.-...-.+.++|+.+.+....+ .-.+-++|-|-...++
T Consensus 323 vdli~g~~~~~-inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----------nfcsymqwvp~sdviv 391 (1636)
T KOG3616|consen 323 VDLIGGQNEGF-INHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----------NFCSYMQWVPGSDVIV 391 (1636)
T ss_pred eecccCccccc-ccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----------HHhhhheeccCcceEE
Confidence 34444544433 358999988888888888877666667889999884432221 2235688999888888
Q ss_pred EEECCeEEEE-ECCCCeeeeee
Q 001535 980 VVHETQLAIY-DASKMERIRQW 1000 (1058)
Q Consensus 980 ~~~d~~v~v~-d~~~~~~~~~~ 1000 (1058)
+-+...+++| ++...+.+..+
T Consensus 392 aqn~dnl~iwyn~d~peqvt~~ 413 (1636)
T KOG3616|consen 392 AQNGDNLCIWYNIDAPEQVTMF 413 (1636)
T ss_pred ecCCCceEEEecCCcchhheee
Confidence 8777778887 44444444443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.52 E-value=3.8 Score=41.05 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=52.1
Q ss_pred eecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCccccccccc-------CCCcceEEEEECCCCCEEEEE
Q 001535 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-------DVPISVSRVAWSPDGNYVGVA 424 (1058)
Q Consensus 352 ~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~las~ 424 (1058)
+..++.+ |.+-+.+|.+++||+.+++.+... +.+. .++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 5567775 566678999999999998876532 1111 1122 466789999999999888776
Q ss_pred eCCCeEEEEEecCCC
Q 001535 425 FTKHLIQLYSYAGSN 439 (1058)
Q Consensus 425 ~~dg~i~iwd~~~~~ 439 (1058)
+ +|....|+.+-+.
T Consensus 85 s-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 85 S-NGDSYSYSPDLGC 98 (219)
T ss_pred e-CCCEEEeccccce
Confidence 5 5778888876543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins | Back alignment and domain information |
|---|
Probab=86.44 E-value=5.5 Score=34.30 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcCHHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHhHH
Q 001535 2 SSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1058)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~~s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1058)
..+.+|-...|.+|++..| +.+.+++|-||+|- ..|+ +.|+.++.|....... ..-...+...
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYP--TvR~-----rLd~ii~~lg~~~~~~-------~~~~~~~~~I 94 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYP--TVRN-----RLDKIIEKLGYEEDEE-------EEEEDERKEI 94 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcH--HHHH-----HHHHHHHHhCCCCCcc-------cccchhHHHH
Confidence 3456777888999999999 99999999999995 1111 2233444444311111 1122356778
Q ss_pred hHhhhcCC--HHHHHHHHH
Q 001535 82 LEALDRQD--KAKAVDILV 98 (1058)
Q Consensus 82 ~ell~~~~--~~~a~~~l~ 98 (1058)
|+.|+.|+ .++|++.|+
T Consensus 95 L~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 95 LDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHcCCCCHHHHHHHhC
Confidence 89999998 667888774
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=85.95 E-value=61 Score=35.85 Aligned_cols=197 Identities=15% Similarity=0.053 Sum_probs=104.8
Q ss_pred EEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeEEeeccc-CCe
Q 001535 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE-APV 497 (1058)
Q Consensus 420 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~-~~v 497 (1058)
.+.++..+|.|.-.|.+++..+-..... .....+..-.+..+|+ ++.++.++.++..| .+|+.+....... ..+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3334466777777777776633211111 1112222223333775 77788899899999 5899987776555 111
Q ss_pred eEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCC---cEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCC
Q 001535 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1058)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1058)
..-.+ -.+ ..+..++.++.+...|..++........... .+..-....++ .++.+..+ . ++.+.-.|..+|
T Consensus 146 ~~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCC
Confidence 11111 112 2444555778888888887777776544321 11111112233 33333211 1 346777788888
Q ss_pred ceeeeeecccCcc---e-eEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeeEeccC
Q 001535 575 TIKRTYAGFRKKS---N-GVVQFDT----TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1058)
Q Consensus 575 ~~~~~~~~~~~~~---i-~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 626 (1058)
............. + ....+.. .+..++.++.++.+...|..+++.+......
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7776643221100 1 0000100 1223456677888999999999998887653
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=85.34 E-value=1.1e+02 Score=38.27 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=17.3
Q ss_pred CcccEEEEEEecCcceEEEeecc
Q 001535 763 TSSKVVRLLYTNSAVGLLALGSN 785 (1058)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~d 785 (1058)
+-..+.+++++|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 55677899999999876664444
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=85.30 E-value=30 Score=39.16 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.4
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001535 1008 APISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 1008 ~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
..|..++..+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=84.90 E-value=23 Score=39.69 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=62.4
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeceEEEe-cCCCCCCCCceEEEEcCCC------CEEEEE--E---
Q 001535 915 QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-IPAGKTPTGDTRVQFNADQ------VRMLVV--H--- 982 (1058)
Q Consensus 915 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~d~------~~l~~~--~--- 982 (1058)
-..-+.|+|.|||++|++--..|.|++++-.++.......+. ............|+|+|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 345679999999988876655699999987665422211111 0011112778999999884 344442 1
Q ss_pred ------CCeEEEEECCCC-------eee-eeeccCCCCCCCEEEEEEccCCCEEEEEeCC
Q 001535 983 ------ETQLAIYDASKM-------ERI-RQWTPQDALSAPISCAVYSCNSQLVFATFCD 1028 (1058)
Q Consensus 983 ------d~~v~v~d~~~~-------~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~d 1028 (1058)
...|.-|.+... +.+ ..+..... ..-..|+|.|||.+.++.++.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~--H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGND--HNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCC--cCCceEEECCCCcEEEEECCC
Confidence 223444554321 111 11111111 224578899999977765543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=84.72 E-value=57 Score=34.41 Aligned_cols=189 Identities=11% Similarity=0.093 Sum_probs=102.3
Q ss_pred eeEEEEecCCCEEEEEe---C----------CcEEEEECCCceEEEEecCC------CCCeeEEEEecCCC----cEEEE
Q 001535 834 VPCIALSKNDSYVMSAT---G----------GKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDN----NIIAI 890 (1058)
Q Consensus 834 v~~~~~s~dg~~la~~~---d----------g~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~----~~las 890 (1058)
|..+.+.+++++-+.-+ + -+|.+||+.+++.++++.-+ .+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 45566666665544321 1 15889999999988877532 34577788876222 23333
Q ss_pred E-ECCCCEEEEEccCceeeeEeccc-------------------CCCeeEEEEcC---CCCEEEEEeCCCcEEEEECCCC
Q 001535 891 G-TEDSTIHIYNVRVDEVKSKLKGH-------------------QKRITGLAFST---SLNILVSSGADAQLCVWSIDTW 947 (1058)
Q Consensus 891 g-~~dg~v~iwd~~~~~~~~~~~~h-------------------~~~V~~l~~s~---d~~~l~s~s~Dg~i~iwd~~~~ 947 (1058)
. +..+-+.|+|+.+++.-+.+..+ .+.+.+++.+| ||++|......+ -.+|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 3 34458999999988655443322 13366666655 666777665444 334444321
Q ss_pred -----ce---e---ceEEEecCCCCCCCCceEEEEcCCCCEEEEE-ECCeEEEEECCCCe---eeeeeccCCCCCCCEEE
Q 001535 948 -----EK---R---KSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKME---RIRQWTPQDALSAPISC 1012 (1058)
Q Consensus 948 -----~~---~---~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~d~~v~v~d~~~~~---~~~~~~~~~~~~~~v~~ 1012 (1058)
.. . ..+..- +...+....++++++|.++++- ..+.|..|+..+.- ....+......-.-+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l---G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL---GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE---EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec---cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 00 0 000000 1111345678899999888874 78899999988621 12222221111346789
Q ss_pred EEEcc--CCCEEEEEe
Q 001535 1013 AVYSC--NSQLVFATF 1026 (1058)
Q Consensus 1013 l~~s~--dg~~l~t~~ 1026 (1058)
+.+.+ +|.+.+...
T Consensus 239 ~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEE-T--TS-EEEEE-
T ss_pred eeeccccCceEEEEEC
Confidence 99999 888777655
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.58 E-value=17 Score=39.90 Aligned_cols=152 Identities=13% Similarity=0.045 Sum_probs=89.0
Q ss_pred CCcEEE-EEECCCCEEEEEccCceeeeEecccCCCeeEEEEcCCC--------CEEEEEeCCCcEEEEECC-CCceeceE
Q 001535 884 DNNIIA-IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL--------NILVSSGADAQLCVWSID-TWEKRKSV 953 (1058)
Q Consensus 884 ~~~~la-sg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~--------~~l~s~s~Dg~i~iwd~~-~~~~~~~~ 953 (1058)
+..+|. .|.....++--|+..|+.+..+..|..- -+.|.|+. +.|+-.|..+..+ -|.+ .|..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr-IDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR-IDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE-ecccccCCceeee
Confidence 444444 4555567888899999999999988665 57788753 3555445444333 3332 33333332
Q ss_pred EEecCCCCCCCCceEEEEcCCCCEEEE-EECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001535 954 TIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIG 1032 (1058)
Q Consensus 954 ~~~~~~~~~~~~v~~l~~s~d~~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~ 1032 (1058)
......+. ....+..-. ...++|+ +..|.|++||--.-..-..+.. ....|-.+..+.+|+++++.+ ...+.
T Consensus 555 esKdY~tK--n~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~---lG~aIk~idvta~Gk~ilaTC-k~yll 627 (776)
T COG5167 555 ESKDYKTK--NKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPG---LGDAIKHIDVTANGKHILATC-KNYLL 627 (776)
T ss_pred eehhcccc--ccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcc---cccceeeeEeecCCcEEEEee-cceEE
Confidence 22211111 222222222 3345665 5678899999543332222222 267899999999999998877 56677
Q ss_pred EEeCC--CCeEEEEE
Q 001535 1033 VFDAD--TLRLRCYI 1045 (1058)
Q Consensus 1033 iw~~~--~~~~~~~~ 1045 (1058)
+-|+. .|+..+++
T Consensus 628 L~d~~ik~g~~aGr~ 642 (776)
T COG5167 628 LTDVPIKYGQPAGRD 642 (776)
T ss_pred EEecccccCCccccc
Confidence 76663 45555555
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.52 E-value=66 Score=35.04 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=82.0
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEec-CCCee---
Q 001535 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKL--- 487 (1058)
Q Consensus 412 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~--- 487 (1058)
+-|. |.+..+.+...|.+.-|-+.....--....-....++|.++.||+|++ .++.--.|++|.+++. ..+..
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc--eEEEEecCceEEEEecCCCchhhHH
Confidence 3443 333333344455577777664432111111124567999999999999 8999999999999993 22221
Q ss_pred -EEeecccCCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCc-eEEeeCCCCcEEEEEEccCCCEEEEEe
Q 001535 488 -FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 488 -~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~ 557 (1058)
.+.+..+..|...+|..+ .-++.....| +.+|-...... ......+.-.|.-..|.++.+.++.++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS---TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecC---eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 223334556788888654 3354444443 55565443332 223344555788888889888766654
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=84.34 E-value=1.1e+02 Score=37.58 Aligned_cols=164 Identities=17% Similarity=0.174 Sum_probs=101.2
Q ss_pred CCCCeeEEEEe---c---CCCcEEEEEECCCCEEEEEc------cCc---------eeeeEeccc---CCCeeEEEEcCC
Q 001535 871 PPPASTFLAFH---P---QDNNIIAIGTEDSTIHIYNV------RVD---------EVKSKLKGH---QKRITGLAFSTS 926 (1058)
Q Consensus 871 ~~~~i~~l~~s---~---~~~~~lasg~~dg~v~iwd~------~~~---------~~~~~~~~h---~~~V~~l~~s~d 926 (1058)
-..+|..+.|+ . ...++|++-. ...+.|+.. ... ..+..+..+ ..+...++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45678888887 2 1224666544 556777762 111 233344321 235678999985
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeceEEEec---CCCC------CCCCceEEEEcCCCCEEEEEECCeEEEEECCCCee
Q 001535 927 -LNILVSSGADAQLCVWSIDTWEKRKSVTIHI---PAGK------TPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER 996 (1058)
Q Consensus 927 -~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~~~~------~~~~v~~l~~s~d~~~l~~~~d~~v~v~d~~~~~~ 996 (1058)
.+.||.....|...||++..+.......... ..|. ..+.-..+.|.++-..|++++...+.++|+++...
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQ 236 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCc
Confidence 4689999999999999993222211111111 1111 11444589999999999999999999999998766
Q ss_pred ee-eeccCCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCC
Q 001535 997 IR-QWTPQDALSAPISCAVYSCNSQ-LVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 997 ~~-~~~~~~~~~~~v~~l~~s~dg~-~l~t~~~dg~i~iw~~~~ 1038 (1058)
.. ..... ....|..+.-+++.. +++.-+ ...|...++.+
T Consensus 237 ~~~l~~~~--~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEYLVTAK--TWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred cchhccCC--ChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 43 22221 257888888888722 333222 36777778776
|
These proteins are found in fungi. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.19 E-value=20 Score=44.85 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=44.0
Q ss_pred CCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCceeeeeecccCcceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001535 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1058)
Q Consensus 538 ~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 617 (1058)
...+.+..+......+.... .+.+..|+.........+..... ..+.++..++++..||.+.+||...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 33455555544444444432 45566666544444344433222 11778999999999999999999987
Q ss_pred ce
Q 001535 618 NI 619 (1058)
Q Consensus 618 ~~ 619 (1058)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 65
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.55 E-value=22 Score=44.62 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=40.1
Q ss_pred EEEcCCCCEEEEEECCeEEEEECCCCeeeeeeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 001535 969 VQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1041 (1058)
Q Consensus 969 l~~s~d~~~l~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~ 1041 (1058)
..+...+..+.....+.+.+|+.........+... ....+.++..++++..||.+.+||...|..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 204 VLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN--------GQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred eeeecCCCcceeeeeeeeeehhcccccchhhcccc--------cccCccCCceEEEEEecCCEEeeecCCCce
Confidence 33333344444444555555554444333333322 111188999999999999999999999866
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=83.41 E-value=97 Score=36.05 Aligned_cols=441 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred EEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEecC-
Q 001535 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG- 437 (1058)
Q Consensus 359 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~- 437 (1058)
+|+.++.+|.+.+-.+..........+-... ......... ....-..++..|.|+.++.+..+|.+.|+-++.
T Consensus 2 ~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~-~~~~~~~~r-----~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~ 75 (504)
T PF10433_consen 2 SLVVTTDSGKLSILEYDPSTHGFFKEFVHQW-EPLSKSGSR-----LSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRS 75 (504)
T ss_dssp EEEEEETTTEEEEEEEEEETTEE-E-EEEEE-EE---SSSE-----B-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS-
T ss_pred EEEEEECCCCEEEEEEECCCCccceeeEEEe-EecCCCCCC-----hhcCCcEEEECCcCCEEEEEecCCeEEEEEeccc
Q ss_pred -----------------CCcceeeeeec---ccccCeEEEEeecCCCeeEEEEEeCCCcEEEEe-cCCCeeE--Eeeccc
Q 001535 438 -----------------SNDLRQHSQID---AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF--NFEGHE 494 (1058)
Q Consensus 438 -----------------~~~~~~~~~l~---~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~--~~~~h~ 494 (1058)
...+....-+. +...++..+-+.+......+.+-..+..-.+-. ....... .-..+.
T Consensus 76 ~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~ 155 (504)
T PF10433_consen 76 LDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDE 155 (504)
T ss_dssp ---T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-
T ss_pred ccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCC
Q ss_pred CCeeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCC-----CCcEEEEEE-------ccCCCEEEEEeccCCC
Q 001535 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-----GHWCTTMLY-------SADGSRLFSCGTSKDG 562 (1058)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-----~~~i~~i~~-------s~~~~~l~~~~~~~~~ 562 (1058)
.+ .-+.-.|.+.+-.++.+..--.+.--+...+......... ..-+.+... ..++..++.+. .
T Consensus 156 ~p-~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~----e 230 (504)
T PF10433_consen 156 LP-SFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQD----E 230 (504)
T ss_dssp TT-EEEEEE-TTT-SEEEEESSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEE----T
T ss_pred Cc-cEEEEcCCCCcEEEEECCEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEe----C
Q ss_pred CceEEEEeCCCCc--eeeeeecc-cCcceeEEEEcCCC-CEEEEEe--CCCcEEEEECCCCceeeEeccCCCCCCCceEE
Q 001535 563 DSFLVEWNESEGT--IKRTYAGF-RKKSNGVVQFDTTQ-NHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1058)
Q Consensus 563 ~~~i~~wd~~~~~--~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1058)
+|.++...+.... .....-+. .. ...++++-.++ .++++|+ .|+.+.-|....-+.+..+..-+ +|.+++
T Consensus 231 ~G~l~~l~l~~~~~~i~i~~~g~~~~-~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~---Pi~D~~ 306 (504)
T PF10433_consen 231 DGDLYLLTLDNDGGSISITYLGTLCS-IASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWG---PIVDFC 306 (504)
T ss_dssp TSEEEEEEEEEEEEEEEEEEEEE--S--ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-------SEEEEE
T ss_pred CCeEEEEEEEECCCeEEEEEcCCcCC-hhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcC---CccceE
Q ss_pred eeCCC-----------CEEEEEECCCcEEEEEccCCccccccccCCCcccccCcccceeeee-ccccccccCCCCcceee
Q 001535 637 FSKEG-----------NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV-SASSAVSSGTPANCKVE 704 (1058)
Q Consensus 637 ~s~~~-----------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~~~ 704 (1058)
+.+.. +++++++....=.+--++.|............-.....++.+.... +..+++.+.......+.
T Consensus 307 v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~ 386 (504)
T PF10433_consen 307 VVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQ 386 (504)
T ss_dssp EE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEE
T ss_pred EeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEE
Q ss_pred cc--CCCCCCccccCCCCCCCCCCCCcccCCCCCCCCcceeeeeecCCceEEEEecCCCCCcccEEEEEEecCcceEEEe
Q 001535 705 RS--SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1058)
Q Consensus 705 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 782 (1058)
.. ........+ ... .+..+...++++...+. .-+.+++.+-+++..
T Consensus 387 ~~~~d~~e~~~e~-~~~-~f~~~~~Tl~~~~~~~~------------------------------~ivQVt~~~i~l~~~ 434 (504)
T PF10433_consen 387 ISEGDDGEEVEEV-EED-GFDTDEPTLAAGNVGDG------------------------------RIVQVTPKGIRLIDL 434 (504)
T ss_dssp ES----SSEEEEE-----TS-SSS-EEEEEEETTT------------------------------EEEEEESSEEEEEES
T ss_pred EecccCCcchhhh-hhc-cCCCCCCCeEEEEcCCC------------------------------eEEEEecCeEEEEEC
Q ss_pred eccCeeEEeeeeccccCCCCcccccccceeeccCCCceeeeeccCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEECCCc
Q 001535 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF 862 (1058)
Q Consensus 783 ~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~ 862 (1058)
........|.. ..+.....|...++..+++.+++.+..+.+...
T Consensus 435 ~~~~~~~~w~~------------------------------------~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~ 478 (504)
T PF10433_consen 435 EDGKLTQEWKP------------------------------------PAGSIIVAASINDPQVLVALSGGELVYFELDDN 478 (504)
T ss_dssp SSTSEEEEEE-------------------------------------TTS---SEEEESSSEEEEEE-TTEEEEEEEETT
T ss_pred CCCeEEEEEeC------------------------------------CCCCeEEEEEECCCEEEEEEeCCcEEEEEEECC
Q ss_pred eEEEEecCC-----CCCeeEEEEec
Q 001535 863 KVMTTFMSP-----PPASTFLAFHP 882 (1058)
Q Consensus 863 ~~~~~~~~~-----~~~i~~l~~s~ 882 (1058)
......... ...|.|+...|
T Consensus 479 ~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 479 KISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEEEEE----EE-SS-EEEEE---
T ss_pred ceeeeeeccccccCCCceEEEEeCC
|
... |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.39 E-value=0.46 Score=51.06 Aligned_cols=208 Identities=14% Similarity=0.155 Sum_probs=118.6
Q ss_pred cCCCcEEEEEeecCCCeEEEEEeccceEEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEE
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1058)
.-++.-..++|.-+|..+++.+-..+.+.|||+.+..... ...-..|+... +.|++.+..+
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-----------------LE~gg~~s~sl--l~wsKg~~el 132 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-----------------LESGGTSSKSL--LAWSKGTPEL 132 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-----------------HhccCcchHHH--HhhccCCccc
Confidence 3455666778888887666667788999999997643211 00011233332 7899999999
Q ss_pred EEEeCCCeEEEEEecCCCcceeeeeecccccCeEEEEeecCCCeeEEEEEeCCCcEEEEecCCCeeEEee--cccCCee-
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEAPVY- 498 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~- 498 (1058)
+.+-..|.+.|++..+..... ....|..++++++|.+.+. .+.++.|..+.+-...|....... +..+...
T Consensus 133 ~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~qegeta~ltevggepdnm~~ 206 (615)
T KOG2247|consen 133 VIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTTQEGETASLTEVGGEPDNMDF 206 (615)
T ss_pred cccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhhhccceeeeeeccCccchhhh
Confidence 999999999999988765443 2334999999999999885 677887877766553343332222 1111110
Q ss_pred -EEeec-ccCCceEEEEEeeCCeEEEE-ec--CCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCC
Q 001535 499 -SICPH-HKENIQFIFSTAIDGKIKAW-LY--DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 499 -~~~~~-~~~~~~~l~s~~~dg~i~~w-d~--~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1058)
.+... +..-|..+.+.-..+....| .+ .....-..+....+.+.|+.|--||..+.-- .-+.|..-...+
T Consensus 207 ~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~i~igf-----~ag~iV~iS~h~ 281 (615)
T KOG2247|consen 207 FYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGYILIGF-----DAGYIVSISAHN 281 (615)
T ss_pred heeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccccccccc-----cceeEEEEeccc
Confidence 11100 01122233222211111001 11 1112223566666778888888887655432 244555556666
Q ss_pred Cceeee
Q 001535 574 GTIKRT 579 (1058)
Q Consensus 574 ~~~~~~ 579 (1058)
+++...
T Consensus 282 aeLgae 287 (615)
T KOG2247|consen 282 AELGAE 287 (615)
T ss_pred hHHHHH
Confidence 655443
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.50 E-value=24 Score=38.92 Aligned_cols=98 Identities=11% Similarity=0.130 Sum_probs=55.7
Q ss_pred eeEEeecccCCceEEEEEeeCCeEEEEecCCCCceEEeeCCCCcEEEEEEccCCCEEEEEeccCCCCceEEEEeCCCCce
Q 001535 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1058)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1058)
|..+.. ++.|..++-.|.+|.+.++-.+..+....+......|+|-.++-+.+++.+.
T Consensus 106 V~~vl~--s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-------------------- 163 (741)
T KOG4460|consen 106 VYQVLL--SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-------------------- 163 (741)
T ss_pred EEEEEe--cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC--------------------
Confidence 334444 3456778888888877665433333333333333334443333222222111
Q ss_pred eeeeecccCcceeEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeeEe
Q 001535 577 KRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTST 623 (1058)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~ 623 (1058)
..-.+..++|+|+. ..++.-+.|..|++||+.....+...
T Consensus 164 -------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 -------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred -------CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 11134557898875 78888889999999999887766443
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=82.05 E-value=6.6 Score=37.72 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCeeEEEEcCCC------CEEEEEeCCCcEEEEECCC
Q 001535 916 KRITGLAFSTSL------NILVSSGADAQLCVWSIDT 946 (1058)
Q Consensus 916 ~~V~~l~~s~d~------~~l~s~s~Dg~i~iwd~~~ 946 (1058)
..|..++|||-| -+|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 4888999999999998774
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=81.62 E-value=38 Score=35.32 Aligned_cols=125 Identities=10% Similarity=0.133 Sum_probs=0.0
Q ss_pred EEEEEccCCCccccccceeecccccCcccccccccCCCcceEEEEECCCCCEEEEEe------CCCeEEEEEecCCCcce
Q 001535 369 ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF------TKHLIQLYSYAGSNDLR 442 (1058)
Q Consensus 369 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~dg~i~iwd~~~~~~~~ 442 (1058)
|++||..+.+-..- ..+-.+.|+++.|..+.+.++.|. ....+..||+.+.....
T Consensus 18 lC~yd~~~~qW~~~-------------------g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 18 LCLYDTDNSQWSSP-------------------GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred EEEEECCCCEeecC-------------------CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee
Q ss_pred eeeeecccc-----cCeEEEEeecCCCeeEEEEEe---CCCcEEEEe-cCCCeeEE-eecccCCeeEEeeccc-------
Q 001535 443 QHSQIDAHV-----GAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSGRKLFN-FEGHEAPVYSICPHHK------- 505 (1058)
Q Consensus 443 ~~~~l~~h~-----~~v~~l~~s~d~~~~~l~s~~---~d~~i~iwd-~~~~~~~~-~~~h~~~v~~~~~~~~------- 505 (1058)
+.+-. ++|..+.+..+...-+.+.|. .+..|..|| .+-..+.. ..+....|..+.+.+.
T Consensus 79 ----~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~ 154 (281)
T PF12768_consen 79 ----LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPLNSSSHDN 154 (281)
T ss_pred ----cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEecccccccc
Q ss_pred ----CCceEEEEEee
Q 001535 506 ----ENIQFIFSTAI 516 (1058)
Q Consensus 506 ----~~~~~l~s~~~ 516 (1058)
.+.+.|+..+.
T Consensus 155 ~~~~~~~~~Llv~G~ 169 (281)
T PF12768_consen 155 SSLFDSDQVLLVTGS 169 (281)
T ss_pred ccccCCCcEEEEEee
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1058 | ||||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-06 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-06 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-06 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 9e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-06 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 9e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-06 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-06 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-06 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-06 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-06 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 7e-06 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 7e-06 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-05 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 8e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 8e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-08 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-06 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-06 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-06 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 2e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 3e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 7e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-04 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 2e-04 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 2e-04 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 2e-04 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 2e-04 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 3e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 5e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 6e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 7e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 9e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 9e-04 |
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1058 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.003 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.003 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 5e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.001 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.003 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 6e-17
Identities = 60/405 (14%), Positives = 118/405 (29%), Gaps = 82/405 (20%)
Query: 275 VPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLP 334
VP NQ + P P + D + + L+ + + Y+ + LP
Sbjct: 4 VPYNQRANHSKPIPPFL------LDLDSQSVPDALKKQTNDYYILYNPA---------LP 48
Query: 335 RTVAVSLHQ----GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
R + V LH+ S V + F + L N ++ ++ LV++
Sbjct: 49 REIDVELHKSLDHTSVVCCVKFSNDGE--YLATGCNKTTQVYRVSDG-SLVARLSDDSAA 105
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
S + + V +SPDG ++ LI+++ + +
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165
Query: 451 VGAVNDLA-------------------------------------FAYPNKLLCVVTCGD 473
+ +++ P +
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225
Query: 474 DKLIKVWELSGRKLFN--------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
D+ ++VW+ L GH+ VYS+ Q + S ++D +K W
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNL 283
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG--------DSFLVEWNESEGTIK 577
++ D P + Y + S T+++ D ++ W++ G
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Query: 578 RTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNV 617
G R V N F D + + W +
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 8e-11
Identities = 17/133 (12%), Positives = 50/133 (37%), Gaps = 20/133 (15%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPAS------------TF 877
+++V + +++ V+S + + L+N+ + +P +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL------NILV 931
+A ++ I G++D + ++ + L+GH+ + +A + N+
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 932 SSGADAQLCVWSI 944
+ D + +W
Sbjct: 373 TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 2e-08
Identities = 37/356 (10%), Positives = 107/356 (30%), Gaps = 28/356 (7%)
Query: 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756
P N + S P+ P + +D D + + + + + V
Sbjct: 4 VPYNQRANHSKPIPPFLL---------DLDSQSVPDALKKQTNDYYILYNPALPREIDVE 54
Query: 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816
+ +S D +S V + ++N LA G N ++++ + +
Sbjct: 55 LHKSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVAR-------LSDDSAAN 106
Query: 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST 876
N + + + + + S + ++ + ++ + + + +
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 166
Query: 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936
+ + + + G+ D T+ I+++R + L T + + D
Sbjct: 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD 226
Query: 937 AQLCVWSIDTWEKRKSVTIHIPAGKTPTGD-TRVQFNADQVRMLVV-HETQLAIYDASKM 994
+ VW +T + + +G V F D ++ + + +++
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 286
Query: 995 ERIRQWTPQDAL---------SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1041
++ + + N + + + D + +D +
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.1 bits (110), Expect = 7e-06
Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 21/142 (14%)
Query: 835 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTF-------LAFHPQDNN 886
+ Y+ + + + +++ T ++ S + T + F D
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQ 267
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKG------------HQKRITGLAFSTSLNILVSSG 934
+ G+ D ++ ++N++ KS K H+ + +A + + ++S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 935 ADAQLCVWSIDTWEKRKSVTIH 956
D + W + + H
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQGH 349
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.4 bits (194), Expect = 3e-16
Identities = 50/342 (14%), Positives = 108/342 (31%), Gaps = 40/342 (11%)
Query: 301 DHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSL-----HQGSTVISMDFHPS 355
+ EQL ++R A + ++ T ++D + R + H + +M +
Sbjct: 10 EAEQLKNQIRDA--RKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAK-IYAMHWGTD 66
Query: 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415
+ LL+ S +G++ +W+ +++ + P + + C+ + + ++
Sbjct: 67 SR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV------- 468
V ++ L Y +QI G +
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 469 --------------VTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513
V+ D K+W++ G F GHE+ + +IC N +
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFAT 243
Query: 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWC--TTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571
+ D + + + Y C T++ +S G L + D W+
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDA 299
Query: 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
+ AG + + + DS +K W+
Sbjct: 300 LKADRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.7 bits (187), Expect = 2e-15
Identities = 15/116 (12%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGG---KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
E + I N + + + ++ + + + T ++F +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
+ G +D ++++ + L GH R++ L + + + D+ L +W+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.1 bits (157), Expect = 1e-11
Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 8/157 (5%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL 939
D + G D++ +++VR + GH+ I + F + N + DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 940 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET-QLAIYDASKMERIR 998
++ + ++ + + G T V F+ +L ++ ++DA K +R
Sbjct: 251 RLFDLRADQELMTYSHDNI----ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035
+SC + + V D + +++
Sbjct: 307 VLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (94), Expect = 6e-04
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL 939
D + I + +R + L+GH +I + + T +LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 940 CVWSIDTWEKRKSVTIH 956
+W T K ++ +
Sbjct: 80 IIWDSYTTNKVHAIPLR 96
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.9 bits (190), Expect = 6e-16
Identities = 47/314 (14%), Positives = 94/314 (29%), Gaps = 54/314 (17%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS------------------- 382
H+ V + FHP +++ S + I +W+ D +
Sbjct: 16 HRSP-VTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 383 ----KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438
+ +VS V+ P+G+++ A I+++
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--- 130
Query: 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPV 497
H V + L+ +C +D+ ++VW ++ ++ H V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 498 YSICPHHKENI------------------QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
I + + F+ S + D IK W T + +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
W +L+ + G + SC D L W+ +T + F T +
Sbjct: 249 WVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVTSL-DFHKTAPY 303
Query: 600 FLAVGEDSQIKFWD 613
+ D +K W+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (170), Expect = 2e-13
Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 2/133 (1%)
Query: 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFM 869
+H + + + ++ K +++S + I ++++ T + T +
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Query: 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI 929
+ FH I +D T+ +++ + L H+ +T L F +
Sbjct: 245 GHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 930 LVSSGADAQLCVW 942
+V+ D + VW
Sbjct: 304 VVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.5 bits (150), Expect = 7e-11
Identities = 42/274 (15%), Positives = 69/274 (25%), Gaps = 68/274 (24%)
Query: 442 RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI 500
+ + H V + F ++ V+ +D IKVW+ +G +GH V I
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 501 CPHHKE----------------------------------------NIQFIFSTAIDGKI 520
H N I S + D I
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
K W T + W + + DG+ + SC D + W + K
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS----NDQTVRVWVVATKECKAEL 181
Query: 581 AGFRKKSNGV-------------------VQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621
R + + L+ D IK WD+ L
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F G + D ++
Sbjct: 242 TLVGHDNWVR--GVLFHSGGKFILSCADDKTLRV 273
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.8 bits (143), Expect = 5e-10
Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 20/142 (14%)
Query: 835 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ---------- 883
+ +++ + + S + + ++ + T + +++ P+
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 884 ---------DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 934
+ G+ D TI +++V L GH + G+ F + ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 935 ADAQLCVWSIDTWEKRKSVTIH 956
D L VW K++ H
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAH 288
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.2 bits (126), Expect = 8e-08
Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 12/223 (5%)
Query: 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
++V I+ + + S + M + + + I
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
+ D TI ++ V+ GH++ + + + ++ S D + VW + T E +
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178
Query: 951 KSVTIHIPAGKT----PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQD-- 1004
+ H + P A + + S+ + I+ W
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 1005 ------ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1041
+ ++ + + + D + V+D R
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (117), Expect = 9e-07
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
K L GH+ +T + F +++VS+ DA + VW +T + +++ H
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 58
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 9/178 (5%)
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
K W + + GH +PV + H + + S + D IK W Y+T
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGH 58
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
+ + G L SC + + E T+
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV-----SIMPNG 113
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+H ++ D IK W++ + + + R +++G L+A + D ++
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRV 169
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 17/184 (9%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935
T + FHP +++ +ED+TI +++ + + LKGH + ++F S +L S A
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 936 DAQLCVWSIDTWEKRKSV----TIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 991
D + +W +E +++ P GD V + D+ + +T
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------ 133
Query: 992 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1051
+ + + L+ + D + V+ T + + ++
Sbjct: 134 ------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 1052 SPSV 1055
+
Sbjct: 188 VECI 191
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.0 bits (172), Expect = 2e-13
Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLKGHQKRITGLAFSTSLNILVSS 933
+ A++ D IAI + +HIY ++ +LK H ++TG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 934 GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASK 993
G D VW++ + ++ I V + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 994 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1050
+ + + + NS L+ A CD +F A + AP+ +
Sbjct: 130 WWVCKHIKKPI--RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.2 bits (149), Expect = 1e-10
Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 23/262 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+S AW+ D + + H + +Y +G N Q ++ H G V + +A + +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 468 VVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
VTCG D+ VW L GR + C N + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGS---------------RLFSCGTSKDGDSFLVEWNE 571
+ + S D R+FS + +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 572 SEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629
S+ V V F + V DS + D D + + +E
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 630 PNLPRLRFSKEGNLLAVTTADN 651
F E +L+A
Sbjct: 246 LLAV--TFITESSLVAAGHDCF 265
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.5 bits (129), Expect = 4e-08
Identities = 29/282 (10%), Positives = 69/282 (24%), Gaps = 30/282 (10%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
+ ++ T + + +N E+ ++E + + K +
Sbjct: 10 ISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--------------- 53
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
V+ V W+PD N + T +++ G + + A K
Sbjct: 54 --VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111
Query: 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ + + + + N + + + D K + +
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT----SKDGDSFLVEWNESEGTI------ 576
SCG + V W + T+
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616
+ + T++ +A G D + D+
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 28/363 (7%), Positives = 82/363 (22%), Gaps = 16/363 (4%)
Query: 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
++ + + ++ ++ + + + + + ++ + N + T
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGT 71
Query: 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710
+ + G + + + + S + C E+ +
Sbjct: 72 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 131
Query: 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770
I ++ + I + + P T SK+
Sbjct: 132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 191
Query: 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830
+ +GV R A + + L
Sbjct: 192 ELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL------ 244
Query: 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+ + S V + LF + +F +
Sbjct: 245 --PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERF 301
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS----TSLNILVSSGADAQLCVWSIDT 946
D H+ ++ ++ + ++G D + +W + +
Sbjct: 302 QNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
Query: 947 WEK 949
E
Sbjct: 361 LES 363
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 41/337 (12%), Positives = 79/337 (23%), Gaps = 58/337 (17%)
Query: 328 WSLDDLPRTVAVSL--HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPF 385
+ L H G V +D+ P ++ ++ +W L R +
Sbjct: 34 YEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVI 91
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVA--WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ 443
+ AA + + + K S SRV + + S S D
Sbjct: 92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 151
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503
+S + A + + V G +F V+ +C
Sbjct: 152 NSVLLAAGSCDFKCRI-FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563
+ S D + D + + + + + S + + D
Sbjct: 211 ANGSRVAWVSH--DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-----D 263
Query: 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQF------------------------------ 593
F V + K ++ G Q
Sbjct: 264 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323
Query: 594 --------------DTTQNHFLAVGEDSQIKFWDMDN 616
+ F G D + WD+ +
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 9e-13
Identities = 57/346 (16%), Positives = 110/346 (31%), Gaps = 33/346 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W +L + H + + F ++ GS + + +W L +
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCL--RTLVG 55
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
S + +I + W+ + H +
Sbjct: 56 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
Query: 448 DAHVGAVNDLAFAYPNKLL--------------CVVTCGDDKLIKVWELSGRK-LFNFEG 492
DA + + + L+ VV+ D ++KVW+ L +G
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
H VYS+ + S ++D I+ W +T + GH T +
Sbjct: 176 HTNRVYSLQFDGI----HVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGMELKDNI 229
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612
L S + DS + W+ G +T G K + V +N + +D +K W
Sbjct: 230 LVSG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
Query: 613 DMDN---VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
D+ + L + ++ G + R+R S + AV + + +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 7e-06
Identities = 15/121 (12%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 835 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
+ D+ ++S + ++++ T + + T P + + + N + ++
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278
Query: 894 DSTIHIYNVRVDEVKSKLK-----GHQKRITGLAFSTSLNILVSSGAD----AQLCVWSI 944
D T+ +++++ E L G + + S + + + +L V
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
Query: 945 D 945
D
Sbjct: 339 D 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473
DG +V I+++ N + + + + +L V+
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-----SGMELKDNIL--VSGNA 235
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGS 530
D +K+W++ + S + N F+ +++ DG +K W T + +
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295
Query: 531 RVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
V ++ G + S + ++ L+ +
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 15/159 (9%)
Query: 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938
N I G++D+T+ +++ + L GH + ++
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII---------I 71
Query: 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 998
I T R ++ + + L ++D + +
Sbjct: 72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131
Query: 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037
A + + + V + D + V+D +
Sbjct: 132 VLMGHVA-----AVRCVQYDGRRVVSGAYDFMVKVWDPE 165
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 9e-12
Identities = 36/335 (10%), Positives = 86/335 (25%), Gaps = 38/335 (11%)
Query: 339 VSLHQG--STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396
V + Q + + PS LLL+ S +G + ++ +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS-LLLITSWDGSL----------------TVYKFDIQAKN 46
Query: 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND 456
+ + + + T L + Q + +
Sbjct: 47 VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106
Query: 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN--FEGHEAPVYSICPHHKENIQFIFST 514
+ +KL+ G ++I + + V + N +
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166
Query: 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTM----LYSADGSRLFSCGTSK-----DGDSF 565
+ +++ + + L + D
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
++N S+ R + K +N ++F G D I W++ +
Sbjct: 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
Query: 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ ++ + N+L + T+D+ FK
Sbjct: 287 KNFA---KFNEDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 11/166 (6%), Positives = 38/166 (22%), Gaps = 4/166 (2%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK---GHQKRITGLAFSTSLNILVSSG 934
+ P +++ I + D ++ +Y + L ++ + F + ++ + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 935 ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 994
+ + A + + + +
Sbjct: 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
Query: 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1040
+ + NS + + + F
Sbjct: 136 VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.001
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 970
+ + I+ + S ++L+ + D L V+ D K + +
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC---CN 63
Query: 971 FNADQVRMLV 980
F + +
Sbjct: 64 FIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 15/116 (12%)
Query: 856 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV------------- 902
L +A P++ A + D + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 903 --RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
R + K + + FS L ++G+D + W++ T +K K+
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (137), Expect = 2e-09
Identities = 42/295 (14%), Positives = 85/295 (28%), Gaps = 43/295 (14%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELA-------------------MRDRLVSKPF 385
V + + ++ G + I +W+ +R++
Sbjct: 16 KGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+ + + + + + + + I ++ A D+
Sbjct: 73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHH 504
+ H AVN + F +V+ D+ IKVW + + GH+ + +
Sbjct: 133 VLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 188
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + S + D I+ W D GH D R+ S D
Sbjct: 189 ----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG----AYDG 238
Query: 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
+ W+ R AG + S V + + ++ D I WD
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 9e-07
Identities = 29/222 (13%), Positives = 57/222 (25%), Gaps = 41/222 (18%)
Query: 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEA 495
G + L++ V L + ++ + V+ D IK+W+ + GH
Sbjct: 1 GRHSLQRIHCRSETSKGVYCLQYD--DQKI--VSGLRDNTIKIWDKNTLECKRILTGHTG 56
Query: 496 PVYSICPHHKENIQFI-----FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
V + + I ++ V + +
Sbjct: 57 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116
Query: 551 SRLFSCG----------------------------TSKDGDSFLVEWNESEGTIKRTYAG 582
++ S GD + WN S RT G
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176
Query: 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624
G+ ++ D+ I+ WD++ L +
Sbjct: 177 H---KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 215
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 5e-04
Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911
I ++N T + + T L + ++ G+ D+TI ++++ L
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVL 214
Query: 912 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 971
+GH++ + +VS D ++ VW + ++ + +T +
Sbjct: 215 EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL-RTLVEHS---- 267
Query: 972 NADQVRMLVVHETQLAIYDASKMERIRQW 1000
+V L E Q+ +S + I W
Sbjct: 268 --GRVFRLQFDEFQIVS--SSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 320 YSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379
S+S +T + + V G + L++ GSS+ I LW++
Sbjct: 152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGAC 210
Query: 380 LVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439
L + + R+ + V + + AG+
Sbjct: 211 LRVLEGHEELVRCIRFDNK------------RIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
Query: 440 DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481
LR + H G V L F ++ V+ D I +W+
Sbjct: 259 CLRT---LVEHSGRVFRLQFD-EFQI---VSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.001
Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 11/160 (6%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
D+ I G D+TI I++ E K L GH + L + + I
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII---------TGSSD 74
Query: 944 IDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQ 1003
+ + + + + + +A++D + I
Sbjct: 75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134
Query: 1004 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC 1043
A ++ + + + D I V++ T
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVR 172
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 4e-09
Identities = 7/111 (6%), Positives = 24/111 (21%), Gaps = 2/111 (1%)
Query: 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
+ + ++ + L F +
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGK 285
Query: 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
D+ ++ + + + S +V+ D + V+ +
Sbjct: 286 DNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 30/325 (9%), Positives = 86/325 (26%), Gaps = 32/325 (9%)
Query: 333 LPRTVAV--SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
+PR +L+ G V ++ + + G + +W+++
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTR--HVYTGGKGCVKVWDISHPG------------ 83
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
P + + PDG + V + ++ A + +
Sbjct: 84 --NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141
Query: 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQF 510
+ G+ + + + + + C +
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
+++ +D +++W +D ++ Y G L S + + V
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Query: 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630
+ ++F F++ G+D+ + W + + +
Sbjct: 257 DKYQLHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 310
Query: 631 NLPRLRFSKEGNLLAVTTADNGFKI 655
+ S + + + D +
Sbjct: 311 S---CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 9e-08
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 8/136 (5%)
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + D + + + P G ++ V +++ + Q+
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV----NKPDKYQL 261
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
H V L FAY K V+ G D L+ W + V S +
Sbjct: 262 HLHESCVLSLKFAYCGKWF--VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD- 318
Query: 508 IQFIFSTAIDGKIKAW 523
++I + + D K +
Sbjct: 319 -KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471
+ ++ G + +L+ + + Q +V + +K + VT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324
Query: 472 GDDKLIKVWEL 482
DK V+E+
Sbjct: 325 SGDKKATVYEV 335
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 8e-09
Identities = 35/314 (11%), Positives = 82/314 (26%), Gaps = 27/314 (8%)
Query: 313 PSAEEVTYSSSRHQT-WSLDD----LPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSN 366
P+ + Y + LDD +P V + H S V ++ F P + L G +
Sbjct: 27 PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES 86
Query: 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426
G++ +W + S F+ + +S ++W +G + V
Sbjct: 87 GKVIVWGWTF-----------DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV--WELSG 484
+ + V +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
Query: 485 RKLFNFEGHEAPVYSICPHHKEN--IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542
+ V + + + S + + D P
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255
Query: 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ--FDTTQNHF 600
L D + + G D+ + W+ + + + +++ T
Sbjct: 256 FALSWLDSQKFATVG----ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Query: 601 LAVGEDSQIKFWDM 614
+++ D + F+++
Sbjct: 312 ISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 5e-08
Identities = 36/318 (11%), Positives = 87/318 (27%), Gaps = 27/318 (8%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ + + P+ + + + + D +P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFV----------------RCLDDGDSKVPPVVQFTGH 61
Query: 405 VPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYAGSNDLRQ-----HSQIDAHVGAVNDL 457
V+ V +SP Y+ + ++ + + S+ G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517
++ + + LCVV G D + + C + + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 518 GKIK---AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574
G + + S + G + + +S D S S +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634
+ + + + F VG D+ I+ WD+ + + +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 635 LRFSKEGNLLAVTTADNG 652
+ GN ++ + +G
Sbjct: 301 VGVVATGNGRIISLSLDG 318
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 5e-05
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 916
F P A D+ A D+TI +++V + K ++
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 917 RITGLAFSTSL---NILVSSGADAQLCVWSI 944
++ ++S D L + +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 7/160 (4%)
Query: 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLKGHQKR-ITGLAFSTSLN--I 929
+T L++ P N I + + + + +V + GH +T + FS
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD--TRVQFNADQVRMLVVHETQLA 987
L S ++ VW ++ SV +++ + + + ++ + R+ VV E +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1027
+ S I+ + + T
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.7 bits (132), Expect = 1e-08
Identities = 33/304 (10%), Positives = 81/304 (26%), Gaps = 20/304 (6%)
Query: 313 PSAEEVTYSSSRH-QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITL 371
P+ +++ Y + T + L T + H PS G +G + +
Sbjct: 27 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQ-TTVAKTSPSGY-YCASGDVHGNVRI 84
Query: 372 WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431
W+ ++ ++ + + + + + G L
Sbjct: 85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKR----------IAAVGEGRERFGHVFLFD 134
Query: 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491
+ G+ + + + V F
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
P S+ + + +DG D V + T DG+
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS---PDGT 251
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
++ S D + WN + +++T + + + T+ +++ + I F
Sbjct: 252 KIASAS----ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 612 WDMD 615
+ +
Sbjct: 308 VNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 5e-08
Identities = 41/332 (12%), Positives = 91/332 (27%), Gaps = 31/332 (9%)
Query: 326 QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPF 385
QT LPRT T + + P+ + + + +
Sbjct: 5 QTALFPSLPRT------ARGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLT------- 49
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
I+ + + SP G Y ++++ + +
Sbjct: 50 ------------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKT 96
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505
I G V D+++ +K + V G ++ V+ +A +
Sbjct: 97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 156
Query: 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565
I S + D + + + + + ++ Y+ DGS S G +
Sbjct: 157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 216
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNILTST 623
G + S V + + + D IK W++ + + +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276
Query: 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + +L L +A+
Sbjct: 277 PVGTRIED-QQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK- 916
F+ + S F D IA + D TI I+NV +V+ + +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 917 RITGLAFSTSLNILVSSGADAQLCVWSID 945
L + LVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 934
+ L P + I ++++ V H + T S S S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 935 ADAQLCVWSIDTW 947
+ +W
Sbjct: 78 VHGNVRIWDTTQT 90
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (129), Expect = 2e-08
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQ 915
+S PA + +++A G+ D+ I IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 916 KRITGLAFSTSLNILVSSGADAQLCVWSI 944
+ L + T + LVSSGADA + W++
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
DEV + GH K IT L + L+S D ++ WS + +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 11/95 (11%), Positives = 21/95 (22%), Gaps = 10/95 (10%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE 506
I H + L +++ D I W S + H + S+ +
Sbjct: 9 ISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQ 58
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541
I ++ A
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 93
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 6e-04
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
++ + + P + + V I +YS + +
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK- 252
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
++AH VN+L + P+ L V+ G D IK W
Sbjct: 253 -ALNAHKDGVNNLLWETPSTL---VSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 0.002
Identities = 31/287 (10%), Positives = 72/287 (25%), Gaps = 28/287 (9%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL---------AMRDRLVSKPFKIWDMAA 392
H + ++ +P L+ GS +G I W + SK + ++
Sbjct: 12 HNKG-ITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 393 CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG 452
I K S +VA + + + V + + + ++
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512
N + + G+ + A I E
Sbjct: 126 V-----SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 180
Query: 513 STAIDGKIKA-----WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ R W + + + D+ +
Sbjct: 181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240
Query: 568 EWN-ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
++ + I + + N ++ + ++ G D+ IK W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 38/373 (10%), Positives = 92/373 (24%), Gaps = 41/373 (10%)
Query: 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656
+++ LA ++ D + + + P + G + T +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE---- 56
Query: 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716
SL ++ E L + +V+ SP
Sbjct: 57 -------SLVKIDLVTGETLGRI---------------DLSTPEERVKSLFGAALSPDGK 94
Query: 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776
+ + T +V AE + + + ++ LY
Sbjct: 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR 154
Query: 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836
+ G K ++ + + L + N +
Sbjct: 155 DLHVMDPEAGTLVEDKPIQSWEAE-----------TYAQPDVLAVWNQHESSGVMATPFY 203
Query: 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896
A D +A + ++ T ++ + F +
Sbjct: 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNV 261
Query: 897 IHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
+ +++ + ++ + ST + + GA L + +T EK+ V +
Sbjct: 262 LESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320
Query: 957 IPAGKTPTGDTRV 969
R+
Sbjct: 321 GN-ASMSLASVRL 332
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 34/345 (9%), Positives = 84/345 (24%), Gaps = 45/345 (13%)
Query: 316 EEVTYSSSRHQTWSLDDLP-----RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEIT 370
+ + +R + D + + ++ G T + P + + + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 371 LWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430
+L + L + S+ A SPDG +A + +
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVK--------------SLFGAALSPDGKT--LAIYESPV 103
Query: 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF 490
+L + + DA + AF P ++ + D + +
Sbjct: 104 RLELTHFEVQPTRVALYDAETLSRRK-AFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162
Query: 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
G + P + D +++ G
Sbjct: 163 AGT---LVEDKPIQSWEAETYAQ--PDVLAVWNQHESSGVMATPFYTARKDIDPADPT-- 215
Query: 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610
+ L+ + G + R A G + ++
Sbjct: 216 ----------AYRTGLLTMDLETGEMAMR--EVRIMDVFYFSTAVNPAKTRAFGAYNVLE 263
Query: 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+D++ + + S +G+ + + A
Sbjct: 264 SFDLEKNASIKRVPL-PHSYY--SVNVSTDGSTVWLGGALGDLAA 305
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 1e-07
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQ 915
F + + +NI+ G ++ +IYN+R + V + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDA 324
Query: 916 KRITGLAFSTSLNILVSSGADAQLCVWSID 945
+I + F ++ + D Q + +D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
Q + + H+ +V + + + +T DDK+I+V++ + + L GH+ V+++
Sbjct: 4 QRTTLRGHMTSVIT-CLQFEDNYV--ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
H + S + D ++ W ++ + + + S+D
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 562 GDSFLVEWNESEGTIKRTY 580
+ W + + +
Sbjct: 118 NTLHV--WKLPKESSVPDH 134
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL--FNFEGHEAPVYSI 500
+ H ++ + Y + + + G + ++ L KL N ++S+
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
K + + DG+ + D
Sbjct: 331 NFKGK---TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
++N + G +D I +Y+ + +L GH + L ++ ILVS D + VW
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 944 IDTW 947
I
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 0.001
Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 8/131 (6%)
Query: 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967
++ L+GH + N +++ D + V+ + ++ H G
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH------DGGVW 57
Query: 968 RVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1027
+++ ++ + K + V N + +
Sbjct: 58 ALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 1028 DGNIGVFDADT 1038
D + V+
Sbjct: 117 DNTLHVWKLPK 127
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 35/328 (10%), Positives = 90/328 (27%), Gaps = 16/328 (4%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
+ + + +S H G V ++ + +L+ GS++ + +W++
Sbjct: 38 YDSINKKFLLQLSGHDGG-VWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHN 94
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + +I V S Y +
Sbjct: 95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
G + + + + V D+ LI + L+ GH +Y +
Sbjct: 155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHE 212
Query: 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ S ++D I+ W + + S +
Sbjct: 213 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--------DKFLVSAAADGS 264
Query: 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
R ++ + + F + ++ L G ++Q +++ + ++ +
Sbjct: 265 IRGWDANDYSRKFSYHHTNLSAITTFYVS-DNILVSGSENQFNIYNLRSGKLVHANI-LK 322
Query: 628 GLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F L+A D +
Sbjct: 323 DADQIWSVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 27/358 (7%), Positives = 74/358 (20%), Gaps = 22/358 (6%)
Query: 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660
+A Q D+ +L + + +R + + + G +
Sbjct: 18 IAFVSRGQAFIQDVSGTYVLKVPEPLR----IRYVRRGGDTKVAFIHGTREGDFLGIYDY 73
Query: 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720
E + K + + V +
Sbjct: 74 RTGKAEKFEENLGN-VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 132
Query: 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG-L 779
+ S + K + + T+ A
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 192
Query: 780 LALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
L S + + + +P + +
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE--------- 243
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
+ + ++++ S + E +
Sbjct: 244 -AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
Y+V+ K+ + +T L S ++ D ++ + ++ E ++V
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.6 bits (93), Expect = 8e-04
Identities = 21/252 (8%), Positives = 60/252 (23%), Gaps = 6/252 (2%)
Query: 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850
N + + + + + IA + +
Sbjct: 96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155
Query: 851 GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910
++ + + + D+ + + S + V +
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 215
Query: 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 970
+ I + S + LV ++ D + K + ++
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSE--AGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273
Query: 971 FNADQVRMLVVHETQLAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF 1026
+ + V E A + + ++ + + ++ S + + V
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRK 333
Query: 1027 CDGNIGVFDADT 1038
DG I F +
Sbjct: 334 DDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.001
Identities = 23/305 (7%), Positives = 64/305 (20%), Gaps = 65/305 (21%)
Query: 408 SVSRVAWSPDGNYVGVA--------------------FTKHLIQLYSYAGSNDLRQHSQI 447
+ V D + F ++L +++ + +
Sbjct: 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA 103
Query: 448 DAHV--------------------GAVNDLAFAYPNKLLC--------VVTCGDDKLIKV 479
+ + D + ++ + + I V
Sbjct: 104 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 163
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW-----LYDTMGSRVDY 534
+++ GRK+F + Y+ + ++ + + + +
Sbjct: 164 YDMEGRKIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 221
Query: 535 DAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-- 590
P + + + R
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281
Query: 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
++ E + +D+ + + NL LR S + + V D
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN------NLTDLRLSADRKTVMVRKDD 335
Query: 651 NGFKI 655
Sbjct: 336 GKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.7 bits (88), Expect = 0.003
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 17/149 (11%)
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI---- 401
V++ F + ++ + + + + DM S P
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267
Query: 402 ----FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDL 457
+ + S Y A K ++ Y ++ + DL
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDL 320
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRK 486
+ K + + DD I + L +
Sbjct: 321 RLSADRKTV--MVRKDDGKIYTFPLEKPE 347
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 51.7 bits (122), Expect = 3e-07
Identities = 38/381 (9%), Positives = 85/381 (22%), Gaps = 41/381 (10%)
Query: 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGNLLAVTTA 649
+ + + + D+ + + S P + + V
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59
Query: 650 DNG-FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708
G + + A + + + S A+ ++ P +
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY-- 117
Query: 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768
+V + + R V + ++
Sbjct: 118 -----------------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM----RAADDG 156
Query: 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 828
L + + + + +A V W S
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLR---NWNRKGYSAPDVLYFWPHQSP-------RHE 206
Query: 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888
+ ++ T K T + F +
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266
Query: 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948
+ + Y+++ ++ +AF + L G L V++ DT E
Sbjct: 267 IY-GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324
Query: 949 KRKSVTIHIPAGKTPTGDTRV 969
K K I +P G T +V
Sbjct: 325 KVK--NIKLPGGDMSTTTPQV 343
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 31/337 (9%), Positives = 78/337 (23%), Gaps = 56/337 (16%)
Query: 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411
H+ ++V + + + ++A V K +
Sbjct: 4 LKAGHE-YMIVTNYPNNLHVVDVASDT--VYKSCVM----------------PDKFGPGT 44
Query: 412 VAWSPDGNYVGVA----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+PD V + I L + + S ++ A + K +
Sbjct: 45 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 104
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKI------ 520
+L + + +L F + + ++ A DG +
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 521 -KAWLYDT--------MGSRVDYDAPGHWCTTMLYSADGSRLFSC-------------GT 558
T + + FS
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618
+ D + + G + + G +++ +D+
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGVLNRLAKYDLKQRK 283
Query: 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
++ + + + F K+G+ L + N +
Sbjct: 284 LIKAANL-DHTYY--CVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 4e-05
Identities = 14/145 (9%), Positives = 34/145 (23%), Gaps = 11/145 (7%)
Query: 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979
G A ++ + L V + + K + +P P D
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYK--SCVMPDKFGPGT---AMMAPDNRTAY 55
Query: 980 VVHET--QLAIYDASKMERIRQW----TPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1033
V++ + D + P + + S A+ ++ +
Sbjct: 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 1034 FDADTLRLRCYIAPSTYLSPSVLNG 1058
+ + L +
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKPVRT 140
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 4e-05
Identities = 21/237 (8%), Positives = 56/237 (23%), Gaps = 25/237 (10%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
G ++ S P + + + ++ + +++ A
Sbjct: 86 EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRT 140
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-------------- 447
F +P V + + DG+ + + + + + L +
Sbjct: 141 F-PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199
Query: 448 ---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
H ++ + + T +L K E +
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
++ + + H + + G +L+ GT D
Sbjct: 260 SPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 29/359 (8%), Positives = 75/359 (20%), Gaps = 35/359 (9%)
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNP 300
AAA+ A A G + + + + +T + + V T G
Sbjct: 9 AAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSC-AGCGVTLGHSLGAFL 67
Query: 301 DHEQL---MKRLRPAPSAEEVTYSSSRHQT---WSLDDLPRTVAVSLHQGSTVI------ 348
A ++ + R + + L
Sbjct: 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH 127
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
+ S LL + + ++ A+C + +
Sbjct: 128 IIGNCASSACLLFFLFGSSAAAGLSVPGA-----SDDQLTKSASCFHIHPGA-------A 175
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
+ S + Q+ A + +
Sbjct: 176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQ 235
Query: 469 VTCGDDKLIKVWELSGRKLFNFEGHEAP--VYSICPHHKENIQFIFS-----TAIDGKIK 521
+ G + + + + I + + +
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295
Query: 522 AWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579
G + GH ++ + DG+ ++ L ++ + + +
Sbjct: 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV--LDIYDAASDQDQSS 352
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.4 bits (114), Expect = 3e-06
Identities = 32/291 (10%), Positives = 73/291 (25%), Gaps = 31/291 (10%)
Query: 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR 377
+ + +G TV + +HP + ++ S + + ++
Sbjct: 125 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HPEFIVNVK 182
Query: 378 DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437
+ K+ + + ++ W Y A +
Sbjct: 183 E-----TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237
Query: 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLC---------VVTCGDDKLIKVWELSGRKLF 488
L + F +P ++ + + +K+
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297
Query: 489 NFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWL--YDT-----------MGSRVDY 534
+G I H K ++ + D +I + +D + D
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 357
Query: 535 DAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
Y+ G + FS K+ S LV ++ +K R
Sbjct: 358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.0 bits (100), Expect = 2e-04
Identities = 24/246 (9%), Positives = 55/246 (22%), Gaps = 24/246 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSNGEITLWELAMRDRLVSKPFK 386
W + ++ + V + L V G+I L + + +
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-- 59
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS- 445
+V S G Y+ V I + +
Sbjct: 60 ------------------TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
+ Y ++ + + + V + H
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + I ++ + + +T G + + T+ L G
Sbjct: 162 EPRVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY 220
Query: 565 FLVEWN 570
F+ N
Sbjct: 221 FMTAAN 226
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 7e-06
Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 8/228 (3%)
Query: 325 HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKP 384
+L TV + S+D L+ G +NG + + EL+ L +
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFE 222
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
+ + + + + G ++ +
Sbjct: 223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 282
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPH 503
AH V L+F + + + G D ++ W++ + ++ H +
Sbjct: 283 LGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
+ +L S + D C D S
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV---CLDRS 385
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 45/385 (11%), Positives = 103/385 (26%), Gaps = 31/385 (8%)
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646
+ + ++ D +K WD ++ D + L A+
Sbjct: 14 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAI 72
Query: 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706
++A L E + L + S A +
Sbjct: 73 ERDAFELCLVATTSFSGDLL-FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766
+ ++ + + + S L ES T S+
Sbjct: 132 DRLLSHRLVAT------DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185
Query: 767 VVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQH----WLPSSGLLM 821
+ S GL+A G NG ++ + + ++ S + + S
Sbjct: 186 FATSV-DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244
Query: 822 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFH 881
+A + + ++ + S + S + ++++ L+F+
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV------MSLSFN 298
Query: 882 PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI----TGLAFSTSLNILVSSGADA 937
+ D + ++V+ E + L H I LA + L G
Sbjct: 299 DS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG--- 354
Query: 938 QLCVWSIDTWEKRKSVTIHIPAGKT 962
V+ + +K + ++
Sbjct: 355 ---VFDVKFLKKGWRSGMGADLNES 376
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 18/173 (10%), Positives = 41/173 (23%), Gaps = 21/173 (12%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN------------FE 491
+ AH + ++ + V+C D +KVW+ N
Sbjct: 7 ANAGKAHDADIFSVSAC-NSFT---VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
H V + + +T+ G + + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFY--RITREDETKKVIFEKLDLLDSDMKKH 120
Query: 552 RLFSCGTSKDGDSFLVEW---NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601
++ D L + +GT + + + + L
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 36/349 (10%), Positives = 90/349 (25%), Gaps = 55/349 (15%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H + S+ S + S +G + +W+ + D K S S
Sbjct: 13 HDAD-IFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSY------SHFVHKSG 62
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR-------QHSQIDAHVGAV 454
V + + + + V + Y ++ + D +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 455 NDLAFAYPNKLLC---VVTCGDDKLIKVWEL--SGRKLFNFEGHEAPVYSICPHHKENI- 508
L + N L +V +W+ + + + +P + + +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 509 -------------QFIFSTAIDGKIK---------------AWLYDTMGSRVDYDAPGHW 540
I + +G ++ + +
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQN 598
+ + + D + + + + G S+ V+ +
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFSKEGNLLA 645
+ G D +++FWD+ +T+ + L + G+ LA
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (107), Expect = 1e-05
Identities = 29/291 (9%), Positives = 77/291 (26%), Gaps = 24/291 (8%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL---------------VSKPFK 386
H + + ++ + L + G I W+++ +
Sbjct: 11 HNKA-ITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
++ ++ S VA +G+A + + +
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 447 IDAHV---GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503
V + +A + + + V + + H A + S+
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563
+ + + + + + + + + + G S D
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG-SLDNS 247
Query: 564 SFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKFWD 613
+ WN ++ + + V + ++ G+DS IKFW+
Sbjct: 248 VIV--WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (107), Expect = 1e-05
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
+ GH K IT L+ S L S+ A+ + W I T +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-- 911
T + A DN +A G+ D+++ ++N+ +
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 912 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
H + +VS+G D+ + W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 34/315 (10%), Positives = 83/315 (26%), Gaps = 39/315 (12%)
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
QT+ + + +I +W L L + DVP V + SP
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGAL-----------------TLTQVVDVPGQVQPMVVSP 46
Query: 417 DGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT--CGD 473
D Y+ V + + Y A + + A G++ ++ + + + V + G+
Sbjct: 47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN 106
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533
+ ++ + + + +S ++ + + + L+
Sbjct: 107 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA---LKQDRICLFTVSDDGHL 163
Query: 534 YDAPGHWCTTMLYSADGSRLFSC------GTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
TT+ + +F ++ S V +
Sbjct: 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 223
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL---------PR-LRF 637
+ + ++ + S +G + + PR
Sbjct: 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV 283
Query: 638 SKEGNLLAVTTADNG 652
G L +
Sbjct: 284 DHSGKYLIAAGQKSH 298
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 47/378 (12%), Positives = 95/378 (25%), Gaps = 57/378 (15%)
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
++A E QI W++++ LT T + + S + L V ++LA
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF-RVLAYR 65
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
I + S + S D
Sbjct: 66 I----------------------------------APDDGALTFAAESALPGSLTHISTD 91
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
+ + + + + S + S L
Sbjct: 92 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL---- 147
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
L+ + + + P + E+ C+
Sbjct: 148 ----KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP-------RHMVFHPNEQYAYCVNE 196
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
+ V ++ + T +M S + + P ++ A S I +
Sbjct: 197 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 256
Query: 900 YNVRVDEVKSKLKGHQ---KRITGLAFSTSLNILVSSGADA-QLCVWSIDTWEKRKSVTI 955
++V D +G Q + G S L+++G + + V+ I +
Sbjct: 257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 316
Query: 956 HIPAGKTPTGDTRVQFNA 973
G+ P V NA
Sbjct: 317 RYAVGQGPMW---VVVNA 331
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 16/153 (10%), Positives = 43/153 (28%), Gaps = 8/153 (5%)
Query: 891 GTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLNIL-VSSGADAQLCVWSIDTW 947
E IH++N+ + + + ++ + S L V + ++ + I
Sbjct: 10 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD 69
Query: 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERIRQWTPQDA 1005
+ + + T + + + V + +++ + +
Sbjct: 70 DGALTFAAESALPGSLTH---ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126
Query: 1006 LSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038
L S + N L I +F
Sbjct: 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.8 bits (105), Expect = 5e-05
Identities = 22/216 (10%), Positives = 49/216 (22%), Gaps = 9/216 (4%)
Query: 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFA 460
D +V S G Y+ V + + + ++I
Sbjct: 59 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIETSKMEG 117
Query: 461 YPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519
+ +K + + + + H + + I ++ +
Sbjct: 118 WEDKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 176
Query: 520 IKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
+ +T VDY + TT + + L G F+ N +
Sbjct: 177 FIVNVKETGKILLVDYTDLNNLKTTEISA--ERFLHDGGLDGSHRYFITAANARNKLVVI 234
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614
+ + T A
Sbjct: 235 DTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (103), Expect = 8e-05
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 15/168 (8%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
+N + I + + E+K+ L + S S L G D ++ +
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMID 89
Query: 944 IDTWEKRKSVTIHIPAGKTPTG-DTRVQFNADQVRMLVVHE--TQLAIYDASKMERIRQW 1000
+ K + I G +T + + Q I D +E +
Sbjct: 90 LWM--KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147
Query: 1001 T-------PQDALSAPISCAVYSC--NSQLVFATFCDGNIGVFDADTL 1039
+ Q+ P A+ + + + G I + D L
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (93), Expect = 0.001
Identities = 62/403 (15%), Positives = 117/403 (29%), Gaps = 54/403 (13%)
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
+ + + QI D I T D G + R S G L V D ++
Sbjct: 35 SVTLRDAGQIALIDGSTYEIKTVLDT-GYAVH--ISRLSASGRYLFVIGRDGKVNMIDLW 91
Query: 660 IGLRSLRA---VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716
+ + A + + + +E K + + A E P +
Sbjct: 92 MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151
Query: 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT--- 773
+PR + +P + + ++G+ LV TD ++ +
Sbjct: 152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY---TDLNNLKTTEISAERF 208
Query: 774 ------NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 827
+ + +N KL E A Q P G + G
Sbjct: 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGANFVHPTFG 266
Query: 828 VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
P A S ++ G +K++ +F + S F+ HP +
Sbjct: 267 -------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL 319
Query: 888 IAIGTED------STIHIYNVRVDEVKS--------------KLKGHQKRITGLAFS--- 924
T + ++ +++++ + Q R+ F+
Sbjct: 320 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDG 379
Query: 925 TSLNILVSSGADAQ--LCVWSIDTWEKRKSVTIHIPAGKTPTG 965
T + V +G D + L V T E + + TPTG
Sbjct: 380 TEVWFSVWNGKDQESALVVVDDKTLELKHVIK--DERLVTPTG 420
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (92), Expect = 0.001
Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 8/128 (6%)
Query: 841 KNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900
+N V G+I+L + T+++ T + A + + D +++
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMI 88
Query: 901 NVRVDEVK-----SKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVT 954
++ + E + T + + Q + +T E +K +
Sbjct: 89 DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148
Query: 955 IHIPAGKT 962
Sbjct: 149 TRGMTYDE 156
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 39.1 bits (91), Expect = 0.002
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 12/140 (8%)
Query: 821 MANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAF 880
M ND V + A K ++ + + P L
Sbjct: 207 MRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNT 265
Query: 881 HPQDNNIIAIGTEDSTIHIYNV-RVDEVKSKLKGHQKRITG----------LAFSTSLNI 929
P IA G T+ + + ++D++ + I F N
Sbjct: 266 SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325
Query: 930 LVSSGADAQLCVWSIDTWEK 949
+ D+Q+C W+I K
Sbjct: 326 YTTLFIDSQVCKWNIADAIK 345
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.3 bits (87), Expect = 0.003
Identities = 28/267 (10%), Positives = 72/267 (26%), Gaps = 29/267 (10%)
Query: 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS 394
V ++ GS + P + + + + ++++ + A + + + P
Sbjct: 22 NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 395 LPFQASIFKDVPIS----------------------VSRVAWSPDGNYVGVAFTKHLIQL 432
P ++ S +A SPDG + V
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 433 YSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492
+ + + + P+ V D I V + + +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGI----AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
EA I + + ++ + + + G + + DG +
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRT 579
++ + + + + + TI T
Sbjct: 258 VYVALS---FCNTVSVIDTATNTITAT 281
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1058 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.91 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.85 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.84 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.83 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.77 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.7 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.67 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.6 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.52 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.51 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.41 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.41 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.37 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.23 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.18 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.17 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.16 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.13 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.13 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.04 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.0 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.87 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.83 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.62 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.16 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.84 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.76 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.74 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.55 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.31 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.12 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.11 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.02 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.86 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.82 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.64 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.59 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.56 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.52 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.46 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.43 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.49 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.16 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.07 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 93.86 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 93.4 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.6 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 89.62 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.39 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 82.38 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-39 Score=287.35 Aligned_cols=293 Identities=13% Similarity=0.190 Sum_probs=249.0
Q ss_pred CCEEEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 63389523898389999605898089997332139999736897013456112114545765322214579856699998
Q 001535 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1058)
Q Consensus 335 ~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (1058)
.....+++|...|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|.+.|.+++|
T Consensus 42 ~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 42 ARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred CEEEEECCCCCCEEEEEECCCCC-EEEEEE-CCEEEEEECCCCCCCCE--------------EEEEEECCCCCCEEEEEE
T ss_conf 54999879999289999989999-999997-99889977367763311--------------687640488996899998
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECC
Q ss_conf 7899989999689949999802898530003420455676799962699806999981899299992-679734884154
Q 001535 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1058)
Q Consensus 415 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h 493 (1058)
+||+++|++|+.||.|++||+..... .....+..|...+.++.|+|++. ++++++.|+.+++|+ .+++......+|
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 182 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67998898861233211111111111-11111111111111111111111--1111111111111111111111111111
Q ss_pred CCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCC
Q ss_conf 57856985023699509999840795999966899814776279981799998459998999730679995499993898
Q 001535 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1058)
...+.+++|++ ++..+++++.|+.+++||++++.....+ .+...+.+++|+|+++.+++++. ++.+++|++.+
T Consensus 183 ~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~ 255 (337)
T d1gxra_ 183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCEEEEEECCCCCCCCEECC----CCCCCCCCCCC
T ss_conf 11111012344--4321122356655321111110000024-66661579997153030000002----56421111111
Q ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCE
Q ss_conf 81355650666852029999179999999959981999978998223685068999997627850899899999889949
Q 001535 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1058)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 653 (1058)
++... ...|.. .+..++|+|++++|++++.|+.|++||..+++.+..... ...|.+++|+|++++|++++.|+.|
T Consensus 256 ~~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~t~s~D~~I 330 (337)
T d1gxra_ 256 PDKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp SCEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCC-CCCCCC-CCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCC---CCCEEEEEEECCCCEEEEEECCCEE
T ss_conf 11000-012456-541699989999999994899699998999979999269---9987999992799999999089969
Q ss_pred EEEEC
Q ss_conf 99985
Q 001535 654 KILAN 658 (1058)
Q Consensus 654 ~iw~~ 658 (1058)
++|++
T Consensus 331 ~vWdl 335 (337)
T d1gxra_ 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99977
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.5e-38 Score=275.54 Aligned_cols=101 Identities=18% Similarity=0.364 Sum_probs=59.1
Q ss_pred CCCEEEEEE-CCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEE
Q ss_conf 998999993-9919999779850999942999983599992699969999979997999984376433673256788469
Q 001535 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1058)
Q Consensus 842 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~ 920 (1058)
++.++++++ |+.|++|+..+++++..+.+|...|.+++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|++
T Consensus 216 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~ 294 (317)
T d1vyhc1 216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294 (317)
T ss_dssp -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred CCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEE
T ss_conf 886147516997899988899968899968899879999879-9999999979894999999999199999289998899
Q ss_pred EEECCCCCEEEEEECCCCEEEEE
Q ss_conf 99818999899993999599998
Q 001535 921 LAFSTSLNILVSSGADAQLCVWS 943 (1058)
Q Consensus 921 l~~s~d~~~l~s~s~Dg~i~iwd 943 (1058)
++|+|++++|++++.||+|++||
T Consensus 295 ~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 295 LDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECCCCCEEEEEECCCEEEEEC
T ss_conf 99949999999992899499829
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-38 Score=277.19 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=31.0
Q ss_pred CEEEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 3389523898389999605898089997332139999736897013
Q 001535 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV 381 (1058)
Q Consensus 336 ~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~ 381 (1058)
.+...++|++.|+|++|||||+ +||+|+ |+.|+|||+.+++.+.
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~ 97 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVA 97 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEE
T ss_pred EEEEECCCCCCEEEEEECCCCC-EEEEEE-CCEEEEEEECCCCEEE
T ss_conf 1076079999689999999999-999994-9948999813640576
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-37 Score=271.41 Aligned_cols=238 Identities=12% Similarity=0.172 Sum_probs=150.0
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEEEECC
Q ss_conf 85637999983376528983126706886520344698985222225301036887524530158889988419998139
Q 001535 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1058)
Q Consensus 763 ~~~~i~~l~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d 842 (1058)
|.+.|.+++|+|++..|++++.||.+++|++.... +. ....+.. |...+.+++++++
T Consensus 96 h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~--------------------~~-~~~~~~~--~~~~v~~~~~~~~ 152 (337)
T d1gxra_ 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--------------------PR-IKAELTS--SAPACYALAISPD 152 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----------------------E-EEEEEEC--SSSCEEEEEECTT
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCC--------------------CC-CCCCCCC--CCCCCCCCCCCCC
T ss_conf 89968999986799889886123321111111111--------------------11-1111111--1111111111111
Q ss_pred CCEEEEEE-CCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEE
Q ss_conf 98999993-99199997798509999429999835999926999699999799979999843764336732567884699
Q 001535 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1058)
Q Consensus 843 g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l 921 (1058)
+.++++++ ++.+.+|++.++++.....+|...+.+++|++ ++..+++++.|+.+++|++.+++.+..+. |.+.|.++
T Consensus 153 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l 230 (337)
T d1gxra_ 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSL 230 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEE
T ss_conf 11111111111111111111111111111111111012344-43211223566553211111100000246-66615799
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEECCCCEEEEEE
Q ss_conf 981899989999399959999878884010289832799899994089985799899999-7883999987788033341
Q 001535 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQW 1000 (1058)
Q Consensus 922 ~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~i~fs~d~~~l~~~-~d~~i~i~d~~~~~~~~~~ 1000 (1058)
+|+|+++++++++.|+.+++||+.+++.... ..+. ..+.+++|+|++++++++ .|+.|++|++.+++.+...
T Consensus 231 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~-~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~ 303 (337)
T d1gxra_ 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQL------HLHE-SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSSCEEEE------CCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EECCCCCCCCEECCCCCCCCCCCCCCCCCCC------CCCC-CCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEC
T ss_conf 9715303000000256421111111110000------1245-65416999899999999948996999989999799992
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 127889889799999018989999968993999968
Q 001535 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 1001 ~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
.. ...|.+++|+||+++|++|+.||+|++||+
T Consensus 304 ~~----~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 KE----SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EC----SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CC----CCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 69----998799999279999999908996999977
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.5e-38 Score=275.03 Aligned_cols=277 Identities=18% Similarity=0.303 Sum_probs=211.4
Q ss_pred CCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 34568988633895238983899996058980899973321399997368970134561121145457653222145798
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1058)
.|.+.+. ......+|++.|++++|+|+++ +|++|+.||+|+|||+.+++.+.. +.+|.
T Consensus 2 ~w~p~~~--~~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~ 59 (317)
T d1vyhc1 2 EWIPRPP--EKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHT 59 (317)
T ss_dssp CCCCCSS--CSCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCS
T ss_pred CCCCCCC--CCEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCC
T ss_conf 3689898--4489858888768999938989-999993899299998999979999-------------------95788
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCC
Q ss_conf 566999987899989999689949999802898530003420455676799962699806999981899299992-6797
Q 001535 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1058)
Q Consensus 407 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~ 485 (1058)
..|.+++|+|++.+++++..++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++|| .+++
T Consensus 60 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~ 134 (317)
T d1vyhc1 60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGY 134 (317)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEECCCCCC--EEEEECCCCCEEEEECCCCE
T ss_conf 867777630111101111111110111001111111---1000000000000169985--57765267523575114430
Q ss_pred EEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCE
Q ss_conf 34884154578569850236995099998407959999668998147762799817999984599989997306799954
Q 001535 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1058)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~ 565 (1058)
.+..+.+|...+.+++|++ ++.++++++.|+.+++|+.........+..+...+.++.+++++........
T Consensus 135 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------- 205 (317)
T d1vyhc1 135 CVKTFTGHREWVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA------- 205 (317)
T ss_dssp EEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC-------
T ss_pred EEEEECCCCCCCEEEECCC--CCCEEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECC-------
T ss_conf 3468716777630000166--7999999927982999751254034788247787337998632564111034-------
Q ss_pred EEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEE
Q ss_conf 99993898813556506668520299991799999999599819999789982236850689999976278508998999
Q 001535 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1058)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 645 (1058)
. ..........+..+++++.|+.|++|+..+++.+..+..+ ...|.+++++|++++++
T Consensus 206 ------------------~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~ 263 (317)
T d1vyhc1 206 ------------------T--GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFIL 263 (317)
T ss_dssp ------------------C--SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSCEE
T ss_pred ------------------C--CCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECC--CCCEEEEEECCCCCEEE
T ss_conf ------------------5--6303430258861475169978999888999688999688--99879999879999999
Q ss_pred EEECCCCEEEEECCCC
Q ss_conf 9988994999985679
Q 001535 646 VTTADNGFKILANAIG 661 (1058)
Q Consensus 646 ~~~~dg~i~iw~~~~~ 661 (1058)
+++.||.|++|++.++
T Consensus 264 s~~~dg~i~iwd~~~~ 279 (317)
T d1vyhc1 264 SCADDKTLRVWDYKNK 279 (317)
T ss_dssp EEETTTEEEEECCTTS
T ss_pred EEECCCEEEEEECCCC
T ss_conf 9979894999999999
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-36 Score=263.78 Aligned_cols=77 Identities=14% Similarity=0.350 Sum_probs=45.8
Q ss_pred ECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEE------CCCCCEEEEEECCCCEEE
Q ss_conf 42999983599992699969999979997999984376433673256788469998------189998999939995999
Q 001535 868 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF------STSLNILVSSGADAQLCV 941 (1058)
Q Consensus 868 ~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~------s~d~~~l~s~s~Dg~i~i 941 (1058)
...|...|.+++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|+++++ +|++.+|++++.||+|++
T Consensus 304 ~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~i 382 (388)
T d1erja_ 304 YIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382 (388)
T ss_dssp EECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred CCCCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEE
T ss_conf 124553278999889-9999999969897999999999699999688997899998467425899999999918997999
Q ss_pred EECC
Q ss_conf 9878
Q 001535 942 WSID 945 (1058)
Q Consensus 942 wd~~ 945 (1058)
|+++
T Consensus 383 W~~~ 386 (388)
T d1erja_ 383 WKYK 386 (388)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 7621
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.3e-37 Score=269.33 Aligned_cols=286 Identities=14% Similarity=0.218 Sum_probs=237.4
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 89838999960589808999733213999973689701345611211454576532221457985669999878999899
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 422 (1058)
+.+.+.+++++|+|+. +|.++ ++.|.+|++.++.... .+.+|...|++++|+|+|++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCCE-EEEEE-CCEEEEEECCCCCEEE-------------------EECCCCCCEEEEEEECCCCEEE
T ss_conf 7887599999699899-99996-9999999999996617-------------------9747888889999948999672
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEEC--CCCEEEEE-CCCCEEEEEECCCCCEEE
Q ss_conf 996899499998028985300034204556767999626998069999818--99299992-679734884154578569
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~--d~~i~iwd-~~~~~~~~~~~h~~~v~~ 499 (1058)
+|+.||.|++||+.++..... ..+.+|.++|.+++|+|+++ ++++++. +..+++|+ .+++....+.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred CCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 255673674663101111000-01343357543323331110--001111221111111111111111111111111111
Q ss_pred EEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEE
Q ss_conf 85023699509999840795999966899814776279981799998459998999730679995499993898813556
Q 001535 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1058)
Q Consensus 500 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1058)
++|+++.+ ..+++++.|+.|++||+++......+..+...|.++.++|+++++++++. ++.+++|+..++.....
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred CCCCCCCE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
T ss_conf 11121110-12000112211111111111111111111111111234764221211111----11110001244641122
Q ss_pred EEC-------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCC
Q ss_conf 506-------6685202999917999999995998199997899822368506899999762785089989999988994
Q 001535 580 YAG-------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1058)
Q Consensus 580 ~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~ 652 (1058)
+.. |.. .+.+++|+|++++|++++.||.|++||+.+++++..+..+... ....+.+.+++..+++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCEEEEEEECCCEEEEEECCCE
T ss_conf 2111111100246-5321024788999999937996999999999699999799986-3329999951999999989997
Q ss_pred EEEEECC
Q ss_conf 9999856
Q 001535 653 FKILANA 659 (1058)
Q Consensus 653 i~iw~~~ 659 (1058)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEECC
T ss_conf 9999588
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-35 Score=256.81 Aligned_cols=183 Identities=17% Similarity=0.218 Sum_probs=92.3
Q ss_pred ECCCCEEEEEE-CCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCE
Q ss_conf 13998999993-99199997798509999429999835999926999699999799979999843764336732567884
Q 001535 840 SKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 918 (1058)
Q Consensus 840 s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V 918 (1058)
.+++++++.+. |+.+++||+.+++.+....++...+.++.+++ ++..+++++.|+.|++|+..++..+..+.+|...|
T Consensus 168 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v 246 (355)
T d1nexb2 168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 246 (355)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCC
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCC-CCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 02563344211442044430131100011000123321111112-10021012456368763012211111111111111
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCEEEEEECCCCEEEE
Q ss_conf 69998189998999939995999987888401028983279989999408998579989999978839999877880333
Q 001535 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 998 (1058)
Q Consensus 919 ~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~i~fs~d~~~l~~~~d~~i~i~d~~~~~~~~ 998 (1058)
.+++++ +++|++++.||.|++||+.++.... ..+. ........+++++.+++++.|+.|++||+++++.+.
T Consensus 247 ~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~ 317 (355)
T d1nexb2 247 GLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHH-----TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 317 (355)
T ss_dssp CEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEEC-----TTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCC
T ss_pred CCCCCC--CCEEEEEECCCCCCCCCCCCCCEEC--CCCC-----CCCEEEEEECCCCCEEEEEECCEEEEEECCCCCEEE
T ss_conf 111232--1003332011111111111111000--1246-----882299998499989999809979999999997988
Q ss_pred EECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 4112788988979999901898999996899399996
Q 001535 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1058)
Q Consensus 999 ~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~ 1035 (1058)
..... |..+|.+++|+++ .++++++.||++++|.
T Consensus 318 ~~~~~--~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 318 ANILK--DADQIWSVNFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp SCTTT--TCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred EEECC--CCCCEEEEEECCC-EEEEEEECCCCEEEEE
T ss_conf 88458--9998999998399-1999998989099999
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-35 Score=258.10 Aligned_cols=291 Identities=18% Similarity=0.265 Sum_probs=244.9
Q ss_pred CEEEEE-CCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 338952-3898389999605898089997332139999736897013456112114545765322214579856699998
Q 001535 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1058)
Q Consensus 336 ~~~~~~-~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (1058)
...++| +|.+.|+|++|+|+++ +||+|+.||+|+|||+.+++.+.. +.+|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEE-------------------EECCCCCEEEEEE
T ss_conf 65279888789888999989999-999997899555631021025799-------------------7246533775676
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCCCC-EEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 789998999968994999980289853-0003420455676799962699806999981899299992-67973488415
Q 001535 415 SPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1058)
Q Consensus 415 spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~ 492 (1058)
+|++.++++|+.|+.+.+|+....... .....+.+|...........+. .+.....|.....|. ...........
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01211443101332010133222212221110013542110111111111---111112445432001232211111233
Q ss_pred CCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECC
Q ss_conf 45785698502369950999984079599996689981477627998179999845999899973067999549999389
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1058)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1058)
+...+....+.+ .+.++++++.|+.|++||++.+.....+..|...|.+++|+|++.++++++. ++.+++|+..
T Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred CCEEEEEECCCC--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEC----CCEEEEEEEC
T ss_conf 101576300124--4212687605736999999999488999578898589999799899999969----9969997521
Q ss_pred CCCEEEEEECC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCC
Q ss_conf 88135565066-68520299991799999999599819999789982236850689999976278508998999998899
Q 001535 573 EGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1058)
Q Consensus 573 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg 651 (1058)
.......+... ....+..++|++++.+|++++.||.|++||+.+++.+..+..| ...|.+++|+|++.++++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H--~~~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC--CCCEEEEEEECCCCEEEEECCCC
T ss_conf 2211111112244574589999899999999979798999999999398998489--99789999908999999990699
Q ss_pred CEEEEE
Q ss_conf 499998
Q 001535 652 GFKILA 657 (1058)
Q Consensus 652 ~i~iw~ 657 (1058)
.|++||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEEC
T ss_conf 799859
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-35 Score=259.14 Aligned_cols=225 Identities=19% Similarity=0.289 Sum_probs=128.4
Q ss_pred CCCCCCCCE-EEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEE
Q ss_conf 145798566-9999878999899996899499998028985300034204556767999626998069999818992999
Q 001535 401 IFKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1058)
Q Consensus 401 ~~~~h~~~V-~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~i 479 (1058)
.|+||...| +|++| ++++||+|+.||+|++||+.+++.+. ++.+|.++|++++|++++ ++++++.|+.|++
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEECCCC---EEEEEECCCCCCC
T ss_conf 889837886999998--89999999189909999899993999---997899988999986999---9999964524432
Q ss_pred EE-CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 92-67973488415457856985023699509999840795999966899814776279981799998459998999730
Q 001535 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 558 (1058)
|+ ........................+++..+++++.|+.|++|++................ .....+.
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~--------- 148 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPE--------- 148 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTT---------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEEC-CCEECCC---------
T ss_conf 111111111111001111111111111232204554388868999856773001246520001-0000011---------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEE
Q ss_conf 67999549999389881355650666852029999179999999959981999978998223685068999997627850
Q 001535 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1058)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 638 (1058)
...........+.. ....+.++++.++.+..|+.+++|+..+++.+...... ...+.++.++
T Consensus 149 -------------~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~ 210 (355)
T d1nexb2 149 -------------ENPYFVGVLRGHMA---SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYD 210 (355)
T ss_dssp -------------TCTTEEEEEECCSS---CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEE
T ss_pred -------------CCCCEEEEEEECCC---CCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECC--CCCCCCCCCC
T ss_conf -------------23401210110022---21000025633442114420444301311000110001--2332111111
Q ss_pred CCCCEEEEEECCCCEEEEECCCC
Q ss_conf 89989999988994999985679
Q 001535 639 KEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+++..+++++.|+.+++|+..++
T Consensus 211 ~~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 211 HERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp TTTTEEEEEETTSCEEEEETTTC
T ss_pred CCCEEEECCCCCCEEEEEECCCC
T ss_conf 21002101245636876301221
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.6e-37 Score=267.60 Aligned_cols=264 Identities=14% Similarity=0.067 Sum_probs=202.5
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 89838999960589808999733213999973689701345611211454576532221457985669999878999899
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 422 (1058)
..++|+|++|||||+ ++|+|+.|+.|+|||..+++... ...+.+|.++|.+++|+|++++|+
T Consensus 6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~-----------------~~~l~gH~~~V~~l~fsp~~~~l~ 67 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQ-----------------VHELKEHNGQVTGVDWAPDSNRIV 67 (371)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEE-----------------EEEECCCCCCEEEEEECCCCCEEE
T ss_conf 998838999989999-99999488989999888997899-----------------999558899888999979999999
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCE----EEEEECCCCCE
Q ss_conf 99689949999802898530003420455676799962699806999981899299992-67973----48841545785
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK----LFNFEGHEAPV 497 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~----~~~~~~h~~~v 497 (1058)
+|+.|++|++||+.++.... ...+.+|...|++++|+|+++ .+++++.|+.+++|+ ..... ......|...|
T Consensus 68 s~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v 144 (371)
T d1k8kc_ 68 TCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 144 (371)
T ss_dssp EEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEECCCEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99799939998620332110-012232211000111111121--100000257630254420334331110010111222
Q ss_pred EEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEE
Q ss_conf 69850236995099998407959999668998147762799817999984599989997306799954999938988135
Q 001535 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1058)
Q Consensus 498 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1058)
.+++|+| ++.++++++.|+.+++|+............. +. ......+...
T Consensus 145 ~~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~------------------~~~~~~~~~~ 194 (371)
T d1k8kc_ 145 LSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PW------------------GSKMPFGELM 194 (371)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TT------------------BSCCCTTCEE
T ss_pred CCCCCCC--CCCCEECCCCCCEEEEEEECCCCCCCCCCCC----------CC------------------CCCCCCEEEE
T ss_conf 1111111--1111000134767999840157643100122----------11------------------1111110112
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 56506668520299991799999999599819999789982236850689999976278508998999998899499998
Q 001535 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1058)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw~ 657 (1058)
.....|.. .+.+++|+|+++.+++++.|+.|++||...+..+..+..+ ..+|.+++|+|++.++++|. |+.+++|.
T Consensus 195 ~~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~s~~fs~d~~~la~g~-d~~~~~~~ 270 (371)
T d1k8kc_ 195 FESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE--TLPLLAVTFITESSLVAAGH-DCFPVLFT 270 (371)
T ss_dssp EECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS--SCCEEEEEEEETTEEEEEET-TSSCEEEE
T ss_pred EECCCCCC-CEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECC--CCCCEEEEECCCCCEEEEEC-CCCEEEEE
T ss_conf 44047667-4789875123321000014786058864101210000014--66520365469997999981-99267877
Q ss_pred CCCC
Q ss_conf 5679
Q 001535 658 NAIG 661 (1058)
Q Consensus 658 ~~~~ 661 (1058)
....
T Consensus 271 ~~~~ 274 (371)
T d1k8kc_ 271 YDSA 274 (371)
T ss_dssp EETT
T ss_pred EECC
T ss_conf 6089
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.2e-35 Score=253.10 Aligned_cols=202 Identities=13% Similarity=0.176 Sum_probs=118.5
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEE
Q ss_conf 14579856699998789998999968994999980289853000342045567679996269980699998189929999
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1058)
Q Consensus 401 ~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iw 480 (1058)
.|.||.+.|++++|+|++++||+|+.||+|++||+.+++.+. .+..|...|.+++|+|++. ++++++.|+.+++|
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE---EEECCCCCEEEEEEECCCE--EEEEECCCCEEECC
T ss_conf 988878988899998999999999789955563102102579---9724653377567601211--44310133201013
Q ss_pred E-CCCC----EEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 2-6797----3488415457856985023699509999840795999966899814776279981799998459998999
Q 001535 481 E-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1058)
Q Consensus 481 d-~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 555 (1058)
+ .... ....+.+|........... +..+.....+.....|................
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 185 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTG---------------- 185 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSS----------------
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE----------------
T ss_conf 32222122211100135421101111111---11111112445432001232211111233101----------------
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEE
Q ss_conf 73067999549999389881355650666852029999179999999959981999978998223685068999997627
Q 001535 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1058)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i 635 (1058)
.+....+.+.+..+++++.|+.|++||+.+++.+..+.. |...|.++
T Consensus 186 -------------------------------~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~--h~~~i~~v 232 (340)
T d1tbga_ 186 -------------------------------DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAI 232 (340)
T ss_dssp -------------------------------CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECC--CSSCEEEE
T ss_pred -------------------------------EEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEC--CCCCEEEE
T ss_conf -------------------------------576300124421268760573699999999948899957--88985899
Q ss_pred EEECCCCEEEEEECCCCEEEEECC
Q ss_conf 850899899999889949999856
Q 001535 636 RFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
+|+|++.++++++.|+.+++|+..
T Consensus 233 ~~~p~~~~l~s~s~d~~i~~~~~~ 256 (340)
T d1tbga_ 233 CFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT
T ss_pred EECCCCCEEEEEECCCEEEEEEEC
T ss_conf 997998999999699969997521
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.3e-35 Score=253.83 Aligned_cols=203 Identities=12% Similarity=0.178 Sum_probs=82.5
Q ss_pred CCCCEEEEEEECCCCEEEEEEC---CCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCC-EEEEEECCCCEEEEECCCC
Q ss_conf 9988419998139989999939---91999977985099994299998359999269996-9999979997999984376
Q 001535 830 LEEAVPCIALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVD 905 (1058)
Q Consensus 830 ~~~~v~~i~~s~dg~~la~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~lasg~~dg~i~iwd~~~~ 905 (1058)
|...|.+++|++++++++++++ ..+++|+.++++....+.+|...|++++|+| ++. .+++|+.|+.|++|+++++
T Consensus 101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~ 179 (311)
T d1nr0a1 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPF 179 (311)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCCCCCCCCCCC
T ss_conf 35754332333111000111122111111111111111111111111111111121-11012000112211111111111
Q ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEEEC--CCCCCCCCCEEEEECCCCCEEEEE-E
Q ss_conf 4336732567884699981899989999399959999878884010289832--799899994089985799899999-7
Q 001535 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI--PAGKTPTGDTRVQFNADQVRMLVV-H 982 (1058)
Q Consensus 906 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~i~fs~d~~~l~~~-~ 982 (1058)
+....+.+|..+|+++.|+|+++++++++.|+.+++||+.++.....+.... ..+|. ..|.+++|+|++++|+++ .
T Consensus 180 ~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~s~~~~~l~tgs~ 258 (311)
T d1nr0a1 180 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS-GSVFGLTWSPDGTKIASASA 258 (311)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEEC
T ss_conf 11111111111111123476422121111111110001244641122211111110024-65321024788999999937
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 883999987788033341127889889799999018989999968993999968
Q 001535 983 ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 983 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~ 1036 (1058)
|+.|++||+.+++++..+..+......+.++.| ++..+++++.||.|++||+
T Consensus 259 Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNP 310 (311)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE--CCCEEEEEECCCEEEEEEC
T ss_conf 996999999999699999799986332999995--1999999989997999958
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.8e-35 Score=253.61 Aligned_cols=117 Identities=18% Similarity=0.255 Sum_probs=85.9
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCC
Q ss_conf 8566999987899989999689949999802898530003420455676799962699806999981899299992-679
Q 001535 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1058)
Q Consensus 406 ~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~ 484 (1058)
..+|+|++|+|||++||+|+.|+.|++||..+++. .....+.+|.++|.+++|+|+++ +|++++.|++|++|| .++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-EEEEEECCCCCCEEEEEECCCCC--EEEEEECCCEEEEEEECCC
T ss_conf 98838999989999999994889899998889978-99999558899888999979999--9999979993999862033
Q ss_pred CE--EEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCC
Q ss_conf 73--48841545785698502369950999984079599996689
Q 001535 485 RK--LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1058)
Q Consensus 485 ~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1058)
.. ...+.+|...|.+++|+| +++.+++++.|+.+++|+++.
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCCCEEECCCCCCEEEEEEC
T ss_conf 2110012232211000111111--121100000257630254420
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-34 Score=250.39 Aligned_cols=284 Identities=9% Similarity=0.093 Sum_probs=171.1
Q ss_pred ECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 23898389999605898089997332139999736897013456112114545765322214579856699998789998
Q 001535 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1058)
Q Consensus 341 ~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~ 420 (1058)
.+|.+.|+|++|+|+|+ +|++|+.||+|++||+.+++.... ...+|...|.+++|+|++++
T Consensus 9 ~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~~~~g~~ 69 (299)
T d1nr0a2 9 YGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKTTSKGDL 69 (299)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEECTTSCE
T ss_pred CCCCCCCEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEE------------------ECCCCCCCEEEEEEECCCEE
T ss_conf 88887828999979999-999990899299999999968899------------------83788774899884033112
Q ss_pred EEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 99996899499998028985300034204556767999626998069999818992999926797348841545785698
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~i 500 (1058)
+ +++.|+.+++|+...............+...+.+++|++++. ++++++ ++.+++|+.. +..... ....+.++
T Consensus 70 ~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~-~~~~~~--~~~~~~~~ 142 (299)
T d1nr0a2 70 F-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG-KLTEVP--ISYNSSCV 142 (299)
T ss_dssp E-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT-EEEEEE--CSSCEEEE
T ss_pred E-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC-CCCCCCCCCC-CCCCCC--CCCCCCCC
T ss_conf 1-023102688731677620111000111134432100112211--111222-2222111111-111101--11123322
Q ss_pred EECCCCCCEEEEEEEECCEEEEEECCCCCCEE-EEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEE-
Q ss_conf 50236995099998407959999668998147-7627998179999845999899973067999549999389881355-
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR- 578 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~- 578 (1058)
+|++ ++.++++++.|+.+++||++...... ....+...|.+++|+|++.++++++. ++.+++|+..++....
T Consensus 143 ~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 143 ALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANNFELAH 216 (299)
T ss_dssp EECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGTTEESC
T ss_pred CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
T ss_conf 1111--11111111111111111111111111111111111111111111111111111----11111111111111111
Q ss_pred --EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCC-CCCCCEEEEECCCCEEEEEECCCCEEE
Q ss_conf --65066685202999917999999995998199997899822368506899-999762785089989999988994999
Q 001535 579 --TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1058)
Q Consensus 579 --~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~i 655 (1058)
.+.+|.. .+.+++|+|++.++++++.|+.|++||+.++..........+ ...+.++. ++++.++++++.|+.|++
T Consensus 217 ~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~i 294 (299)
T d1nr0a2 217 TNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKF 294 (299)
T ss_dssp CCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEE
T ss_pred CCCCCCCCC-CCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEE-ECCCCEEEEEECCCEEEE
T ss_conf 111111111-111112466645138882899799998999973148983489889689999-779899999928997999
Q ss_pred EEC
Q ss_conf 985
Q 001535 656 LAN 658 (1058)
Q Consensus 656 w~~ 658 (1058)
|++
T Consensus 295 Wdl 297 (299)
T d1nr0a2 295 WNV 297 (299)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 944
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-32 Score=236.55 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=49.4
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 45798566999987899989999689949999802898530003420455676799962699806999981899299992
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
++||.+.|.+ +++++|++||+|+.||+|++||+.+++.++ ++.+|.+.|.+++|+++ ++++++.|+.+++|+
T Consensus 12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~~~ 83 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKVWN 83 (342)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEEEE
T ss_pred ECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEECCC----CCCCCEECCCCCCCC
T ss_conf 8886875099-999789999999189909999899997999---99488999899994798----632100000111111
Q ss_pred -CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECC
Q ss_conf -679734884154578569850236995099998407959999668
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~ 526 (1058)
...........+...+...... ...+..+..|+.+.+|+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~ 125 (342)
T d2ovrb2 84 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIE 125 (342)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESS
T ss_pred CCCCCCEECCCCCCEEEEEEECC----CCCCCCCCCCEEEEEEECC
T ss_conf 11000000012333047652024----6522123444037874035
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-33 Score=240.34 Aligned_cols=275 Identities=17% Similarity=0.264 Sum_probs=112.8
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 38983899996058980899973321399997368970134561121145457653222145798566999987899989
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~l 421 (1058)
+|++.|.+ +++++|+ +||+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+ +|
T Consensus 14 GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~~~~--~l 70 (342)
T d2ovrb2 14 GHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMRDN--II 70 (342)
T ss_dssp CSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEETT--EE
T ss_pred CCCCCEEE-EEEECCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEECCC--CC
T ss_conf 86875099-9997899-999991899099998999979999-------------------9488999899994798--63
Q ss_pred EEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECCCCCEEEE
Q ss_conf 999689949999802898530003420455676799962699806999981899299992-6797348841545785698
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~i 500 (1058)
++|+.|+.+++|+........ ....+...+......+ . .+..+..|+.+.+|+ .+++....+..........
T Consensus 71 ~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
T d2ovrb2 71 ISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 143 (342)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred CCCEECCCCCCCCCCCCCCEE---CCCCCCEEEEEEECCC--C--CCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEE
T ss_conf 210000011111111000000---0123330476520246--5--22123444037874035563001110011110000
Q ss_pred EECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 50236995099998407959999668998147762799817999984599989997306799954999938988135565
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1058)
.. ....++.++.|+.+++|+.........+..+...+... .+++..+++++. |+.|++||+..++.+..+
T Consensus 144 ~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~----dg~i~~~d~~~~~~~~~~ 213 (342)
T d2ovrb2 144 QY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSL----DTSIRVWDVETGNCIHTL 213 (342)
T ss_dssp EE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEET----TSCEEEEETTTCCEEEEE
T ss_pred CC----CCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCC--CCCCCEEEEEEC----CCEEEEEECCCCEEEEEE
T ss_conf 01----33302433589869995252343667872754442100--689999999958----993999525565365674
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC-CCCCCCEEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 06668520299991799999999599819999789982236850689-99997627850899899999889949999856
Q 001535 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1058)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1058)
.+|.. .+.++.++ ++++++++.|+.|++|+....+....+..+. +...+.++ .+++.++++++.||.|++|++.
T Consensus 214 ~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 214 TGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFNKNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp CCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--EECSSEEEEEETTSEEEEEETT
T ss_pred CCCCC-CEEEEECC--CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEEC--CCCCCEEEEECCCCEEEEEECC
T ss_conf 16653-20577068--9999997489889998655442211122100011010000--1379844999089989999999
Q ss_pred CC
Q ss_conf 79
Q 001535 660 IG 661 (1058)
Q Consensus 660 ~~ 661 (1058)
++
T Consensus 289 tg 290 (342)
T d2ovrb2 289 TG 290 (342)
T ss_dssp TC
T ss_pred CC
T ss_conf 99
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.5e-33 Score=240.76 Aligned_cols=81 Identities=12% Similarity=0.233 Sum_probs=34.1
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCEE
Q ss_conf 13556506668520299991799999999599819999789982236850689999976278508998999998899499
Q 001535 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1058)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 654 (1058)
+..+.+.||.. .|.+++|+|++++|++++.||.|++||+.+++....+. ..|...|.+++|+|++.+ ++++.|+.++
T Consensus 3 ~~~~~~~GH~~-~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~h~~~v~~v~~~~~g~~-~~~~~d~~v~ 79 (299)
T d1nr0a2 3 SIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-DVHATMITGIKTTSKGDL-FTVSWDDHLK 79 (299)
T ss_dssp EEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-CSCSSCEEEEEECTTSCE-EEEETTTEEE
T ss_pred CCCEECCCCCC-CCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEEECCCEE-ECCCCEEEEE
T ss_conf 61368488887-82899997999999999089929999999996889983-788774899884033112-1023102688
Q ss_pred EEEC
Q ss_conf 9985
Q 001535 655 ILAN 658 (1058)
Q Consensus 655 iw~~ 658 (1058)
+|+.
T Consensus 80 ~~~~ 83 (299)
T d1nr0a2 80 VVPA 83 (299)
T ss_dssp EECS
T ss_pred EECC
T ss_conf 7316
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-32 Score=236.83 Aligned_cols=290 Identities=13% Similarity=0.218 Sum_probs=219.0
Q ss_pred CCEEEEEEECCCCEEEEEEECCC-EEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCEEEEEECC--CCCE
Q ss_conf 83899996058980899973321-39999736897013456112114545765322214579-85669999878--9998
Q 001535 345 STVISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSP--DGNY 420 (1058)
Q Consensus 345 ~~V~~v~~sp~g~~lla~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~sp--dg~~ 420 (1058)
..+++++|+|+|+. +|.++.+. .|+.|+........ ...+.+| ...|++++|+| ++.+
T Consensus 18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCEEEEEECCCCCE-EEEEECCCEEEEEEECCCCCCCC-----------------EEEEECCCCCCEEEEEEEECCCCCE
T ss_conf 98479999899799-99996998799997688887650-----------------2899078999889999811799979
Q ss_pred EEEEECCCEEEEEEECCCCCCEEE-----EEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECCC
Q ss_conf 999968994999980289853000-----3420455676799962699806999981899299992-6797348841545
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~~~-----~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~ 494 (1058)
||+|+.||+|++||+..+...... ..+..|.++|.+++|+++++.+..++++.++.+++|+ .+++.+..+.+|.
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECC
T ss_conf 99994899779854058862156510025411365673779998999882201001244047888502331100120012
Q ss_pred CCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEE---CCCCCEEEEEECCC-CCEEEEEECCCCCCCEEEEEE
Q ss_conf 78569850236995099998407959999668998147762---79981799998459-998999730679995499993
Q 001535 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWN 570 (1058)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~i~~s~~-~~~l~~~~~~~~~~~~i~iwd 570 (1058)
..|.+++|++..+ ..+++++.|+.+++|+........... .+...|.+++|+|+ +.++++++ .|+.|++||
T Consensus 160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~----~d~~i~iwd 234 (325)
T d1pgua1 160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG----SDRKISCFD 234 (325)
T ss_dssp SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE----TTCCEEEEE
T ss_pred CCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCC----CCCCEEEEE
T ss_conf 3432111123432-06888621112211112211000000001577775277630345310000112----332101343
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEC---CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECC-CCEEEE
Q ss_conf 898813556506668520299991---7999999995998199997899822368506899999762785089-989999
Q 001535 571 ESEGTIKRTYAGFRKKSNGVVQFD---TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-GNLLAV 646 (1058)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~ 646 (1058)
.++++.+.++.+|.. .+..+.|+ +++.+|++++.|+.|++||+.+++.+..+..+.+...+..+++.+. +..+++
T Consensus 235 ~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 313 (325)
T d1pgua1 235 GKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313 (325)
T ss_dssp TTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred ECCCCCCCCCCCCCC-CCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE
T ss_conf 001222111111111-1111000000368999999958993999999999788999954874067699999889999999
Q ss_pred EECCCCEEEEEC
Q ss_conf 988994999985
Q 001535 647 TTADNGFKILAN 658 (1058)
Q Consensus 647 ~~~dg~i~iw~~ 658 (1058)
++.||.|++|++
T Consensus 314 ~s~dg~i~vwdl 325 (325)
T d1pgua1 314 LSLDGTLNFYEL 325 (325)
T ss_dssp EETTSCEEEEET
T ss_pred EECCCEEEEEEC
T ss_conf 979999999979
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8e-30 Score=218.73 Aligned_cols=248 Identities=10% Similarity=0.124 Sum_probs=143.3
Q ss_pred CCEEEEEEEC--CCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEEEECC
Q ss_conf 6379999833--76528983126706886520344698985222225301036887524530158889988419998139
Q 001535 765 SKVVRLLYTN--SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1058)
Q Consensus 765 ~~i~~l~~s~--d~~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d 842 (1058)
..|.+++|+| ++.++++++.||.|++|++........-. + ........ +..+|.+++|+++
T Consensus 64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~--------------~-~~~~~~~~--~~~~v~~v~~s~~ 126 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------------V-NVKSEFQV--LAGPISDISWDFE 126 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE--------------E-EEEEEEEC--CSSCEEEEEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEE--------------C-CCCCCCCC--CCCCEEEEEECCC
T ss_conf 98899998117999799999489977985405886215651--------------0-02541136--5673779998999
Q ss_pred CCEEEEEE---CCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE---CCCCC
Q ss_conf 98999993---9919999779850999942999983599992699969999979997999984376433673---25678
Q 001535 843 DSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL---KGHQK 916 (1058)
Q Consensus 843 g~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~---~~h~~ 916 (1058)
++++++++ ++.+.+|+..+++++..+.+|...|++++|+|.+..++++++.|+.+++|+....+....+ .+|..
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 206 (325)
T d1pgua1 127 GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS 206 (325)
T ss_dssp SSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC
T ss_pred CCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 88220100124404788850233110012001234321111234320688862111221111221100000000157777
Q ss_pred CEEEEEECCC-CCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCEEEEEC---CCCCEEEEE-ECCEEEEEEC
Q ss_conf 8469998189-9989999399959999878884010289832799899994089985---799899999-7883999987
Q 001535 917 RITGLAFSTS-LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN---ADQVRMLVV-HETQLAIYDA 991 (1058)
Q Consensus 917 ~V~~l~~s~d-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~i~fs---~d~~~l~~~-~d~~i~i~d~ 991 (1058)
.|++++|+|+ +.++++++.|+.|++||+.+++....+..+ . ..+..+.|+ +|+++|+++ .|+.|++||+
T Consensus 207 ~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~-----~-~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~ 280 (325)
T d1pgua1 207 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD-----Q-EPVQGGIFALSWLDSQKFATVGADATIRVWDV 280 (325)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT-----T-BCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred CCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCC-----C-CCCCCCEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 52776303453100001123321013430012221111111-----1-11111000000368999999958993999999
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEECCC-CCEEEEEECCCCEEEEEC
Q ss_conf 788033341127889889799999018-989999968993999968
Q 001535 992 SKMERIRQWTPQDALSAPISCAVYSCN-SQLVFATFCDGNIGVFDA 1036 (1058)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~t~~~dg~i~iw~~ 1036 (1058)
.+++.+..+..+.. ...+..+++.+. +.++++++.||.|++||+
T Consensus 281 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 281 TTSKCVQKWTLDKQ-QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TTTEEEEEEECCTT-CGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEEECCC-CCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 99978899995487-4067699999889999999979999999979
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-30 Score=222.09 Aligned_cols=145 Identities=17% Similarity=0.359 Sum_probs=65.5
Q ss_pred CCCEEEEEEECCCCEEEEEE-CCCEEEEECCCCEEEEEE------CCCCCCEEEEEEECCCCCEEEEEECCCC---EEEE
Q ss_conf 98841999813998999993-991999977985099994------2999983599992699969999979997---9999
Q 001535 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF------MSPPPASTFLAFHPQDNNIIAIGTEDST---IHIY 900 (1058)
Q Consensus 831 ~~~v~~i~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~------~~~~~~i~~l~~s~~~~~~lasg~~dg~---i~iw 900 (1058)
...+.+++|+||+ ++|+++ |++|++||+.+++++..+ .+|...|.+++|+| ++++|++|+.|++ |++|
T Consensus 184 ~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lw 261 (393)
T d1sq9a_ 184 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY 261 (393)
T ss_dssp CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCC-CCCEEEEECCCCCCCEEEEC
T ss_conf 9867899978999-899993898299986023321100001111124256387700466-53201124289884210010
Q ss_pred ECCCCEEEEEE-------------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCE
Q ss_conf 84376433673-------------25678846999818999899993999599998788840102898327998999940
Q 001535 901 NVRVDEVKSKL-------------KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1058)
Q Consensus 901 d~~~~~~~~~~-------------~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1058)
|+.+++.+..+ .+|.+.|++++|+||+++|+|++.|++|++||+.+++++..+..|...-. ....
T Consensus 262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~--~~~~ 339 (393)
T d1sq9a_ 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE--IEED 339 (393)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS--SGGG
T ss_pred CCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC--CCCC
T ss_conf 35321344431156666431023202358666001389888069877999899999999979999988687613--7734
Q ss_pred EEEECCCCCEEE
Q ss_conf 899857998999
Q 001535 968 RVQFNADQVRML 979 (1058)
Q Consensus 968 ~i~fs~d~~~l~ 979 (1058)
.++|++++..++
T Consensus 340 ~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 340 ILAVDEHGDSLA 351 (393)
T ss_dssp CCCBCTTSCBCS
T ss_pred EEEECCCCCEEE
T ss_conf 899999999999
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=8.4e-30 Score=218.61 Aligned_cols=210 Identities=8% Similarity=-0.033 Sum_probs=146.7
Q ss_pred EEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCC
Q ss_conf 89997332139999736897013456112114545765322214579856699998789998999968994999980289
Q 001535 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1058)
Q Consensus 359 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~ 438 (1058)
++++.+.+|+|.|||..+++.+.. +..+ ..+..++|||||+++++++.|+.+.+||+.++
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~ 93 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 999976999799998999839999-------------------7379-97137998899999999828999789981089
Q ss_pred CCC--EEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 853--0003420455676799962699806999981899299992-6797348841545785698502369950999984
Q 001535 439 NDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1058)
Q Consensus 439 ~~~--~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 515 (1058)
+.. ..+....+|.+.+.+..|+|||++ ++++++.++.+++|| .+++.+..+..+...+....+.+.+
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~--------- 163 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP--------- 163 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC---------
T ss_pred CCEEEEEEECCCCCCCEEEECCCCCCCCE-EEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCC---------
T ss_conf 81288998448898776984321888888-99981789827999076554225402477643522016888---------
Q ss_pred ECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf 07959999668998147762799817999984599989997306799954999938988135565066685202999917
Q 001535 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1058)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1058)
....+.+++++..++.... .++.+.+|+..+.+.........+.....+.|+|
T Consensus 164 ------------------------~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp 216 (432)
T d1qksa2 164 ------------------------RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216 (432)
T ss_dssp ------------------------CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred ------------------------CEEEEEECCCCCEEEEEEC---CCCEEEEEECCCCCCCEEEEECCCCCCCCCEECC
T ss_conf ------------------------5058998789998999981---6882999984378752279983367542653889
Q ss_pred CCCEEEEEE-CCCCEEEEECCCCCEEEEECC
Q ss_conf 999999995-998199997899822368506
Q 001535 596 TQNHFLAVG-EDSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 596 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 625 (1058)
+++++++++ .++.+.+++..+++....+..
T Consensus 217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 8879999516663677761445268887214
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-28 Score=207.54 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=55.7
Q ss_pred CCCCEEEEEEECCCCEEEEEE-CC---CEEEEECCCCEEEEEE-------------CCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 998841999813998999993-99---1999977985099994-------------299998359999269996999997
Q 001535 830 LEEAVPCIALSKNDSYVMSAT-GG---KISLFNMMTFKVMTTF-------------MSPPPASTFLAFHPQDNNIIAIGT 892 (1058)
Q Consensus 830 ~~~~v~~i~~s~dg~~la~~~-dg---~i~iwd~~~~~~~~~~-------------~~~~~~i~~l~~s~~~~~~lasg~ 892 (1058)
|...|.+++|+|||++|++++ |+ .|++||+++++++..+ .+|...|++++|+| ++++|++|+
T Consensus 230 h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s 308 (393)
T d1sq9a_ 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG 308 (393)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred CCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCC-CCCEEEEEC
T ss_conf 2563877004665320112428988421001035321344431156666431023202358666001389-888069877
Q ss_pred CCCCEEEEECCCCEEEEEECCCCCCEE----EEEECCCCCEEEEE
Q ss_conf 999799998437643367325678846----99981899989999
Q 001535 893 EDSTIHIYNVRVDEVKSKLKGHQKRIT----GLAFSTSLNILVSS 933 (1058)
Q Consensus 893 ~dg~i~iwd~~~~~~~~~~~~h~~~V~----~l~~s~d~~~l~s~ 933 (1058)
.|++|++||+.+++++.++.+|.+.|. .++|++++..++++
T Consensus 309 ~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 999899999999979999988687613773489999999999983
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.98 E-value=5.4e-29 Score=212.97 Aligned_cols=242 Identities=9% Similarity=-0.022 Sum_probs=153.3
Q ss_pred EEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCC
Q ss_conf 89997332139999736897013456112114545765322214579856699998789998999968994999980289
Q 001535 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1058)
Q Consensus 359 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~ 438 (1058)
++++.+.||+|+|||..+++.+.. +..| ..+..++|||||+++++++.|+.|++||+.++
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~ 93 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAK 93 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf 999975999799999999959999-------------------9689-98038999899999999958998899975688
Q ss_pred CCCE--EEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 8530--003420455676799962699806999981899299992-6797348841545785698502369950999984
Q 001535 439 NDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1058)
Q Consensus 439 ~~~~--~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 515 (1058)
+... .+....+|.+.+.+++|+|||++ +++++..++.+.+|| .++.++..+.++...+....+.+.+. ...+..+
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~s 171 (426)
T d1hzua2 94 EPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR-VAAIIAS 171 (426)
T ss_dssp SCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC-EEEEEEC
T ss_pred CEEEEEEEECCCCCCCEEEEEEECCCCCE-EEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCC-EEEEEEC
T ss_conf 60489998678887645885002688987-999635897699985776412578622677736436427885-0389987
Q ss_pred ECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEE-EEECCCCCCEEEEEEC
Q ss_conf 079599996689981477627998179999845999899973067999549999389881355-6506668520299991
Q 001535 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR-TYAGFRKKSNGVVQFD 594 (1058)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~ 594 (1058)
.|+...++. .. +.+.+.+++........ ....+. ..+..+.|+
T Consensus 172 ~d~~~~~~~--------------------------------~~---~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 215 (426)
T d1hzua2 172 HEHPEFIVN--------------------------------VK---ETGKVLLVNYKDIDNLTVTSIGAA-PFLADGGWD 215 (426)
T ss_dssp SSSSEEEEE--------------------------------ET---TTTEEEEEECSSSSSCEEEEEECC-SSEEEEEEC
T ss_pred CCCCEEEEE--------------------------------CC---CCCEEEEEEECCCCCEEEEEECCC-CCCEEEEEC
T ss_conf 878788885--------------------------------27---897699999246652045775667-753761377
Q ss_pred CCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCE-EE--EEECCCCEEEEEC
Q ss_conf 7999999995-998199997899822368506899999762785089989-99--9988994999985
Q 001535 595 TTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL-LA--VTTADNGFKILAN 658 (1058)
Q Consensus 595 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~-l~--~~~~dg~i~iw~~ 658 (1058)
+++++++++. .+..+.+++..+++..................+...+.. +. ....++.+.+|+.
T Consensus 216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~ 283 (426)
T d1hzua2 216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGT 283 (426)
T ss_dssp TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEEC
T ss_pred CCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEEC
T ss_conf 88867886420110000000255627887505874443420110069877457741578965988522
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.7e-27 Score=199.47 Aligned_cols=268 Identities=18% Similarity=0.268 Sum_probs=140.5
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 38983899996058980899973321399997368970134561121145457653222145798566999987899989
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~l 421 (1058)
+|...|+|++| ||+ +||+|+.||+|+|||+.+++.+.. +.+|.+.|.+++| ++++|
T Consensus 13 ~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l 68 (293)
T d1p22a2 13 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 68 (293)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCCEEEEEE--CCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEC--CCCEE
T ss_conf 99998899987--699-999992899399999999919999-------------------9267787763423--63002
Q ss_pred EEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCE---EEEEECCCCCE
Q ss_conf 999689949999802898530003420455676799962699806999981899299992-67973---48841545785
Q 001535 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPV 497 (1058)
Q Consensus 422 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~---~~~~~~h~~~v 497 (1058)
++|+.|+.|++|++..+..... ...+.. ....+.+... .++++..++.+.+|+ ..... ...+..|...+
T Consensus 69 ~s~s~D~~i~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (293)
T d1p22a2 69 ITGSSDSTVRVWDVNTGEMLNT---LIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141 (293)
T ss_dssp EEEETTSCEEEEESSSCCEEEE---ECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred ECCCCCCCCCCCCCCCCCCCCC---CCCCCC--CCCCCCCCCC--CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 1001110110000024641001---111110--0001111110--00001356630686134454442121000113543
Q ss_pred EEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEE
Q ss_conf 69850236995099998407959999668998147762799817999984599989997306799954999938988135
Q 001535 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1058)
Q Consensus 498 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1058)
....+.. ..+++++.|+.+++|+.++......+..+...+..+.++ +..+++++. |+.|++||+.+...+
T Consensus 142 ~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 142 NVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACL 211 (293)
T ss_dssp EEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEE
T ss_pred CCCEECC----CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECC----CCEEEEEECCCCEEE
T ss_conf 1100000----220110699860410078883889971554453221689--875887658----998999866556146
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC---------CEEEEECCCCCCCCCCEEEEECCCCEEEEEE
Q ss_conf 5650666852029999179999999959981999978998---------2236850689999976278508998999998
Q 001535 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV---------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1058)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 648 (1058)
..+.++.. .+. .+.+++.++++++.||.|++||+... ..+..+. +|...|.+++|+ +.+|++++
T Consensus 212 ~~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~H~~~V~~v~~d--~~~l~s~s 284 (293)
T d1p22a2 212 RVLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQFD--EFQIVSSS 284 (293)
T ss_dssp EEECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEEC--SSCEEECC
T ss_pred EEECCCCE-EEE--ECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEC--CCCCCEEEEEEC--CCEEEEEE
T ss_conf 65214310-000--014541079998679979999888886444567754557845--889988999971--99999992
Q ss_pred CCCCEEEEE
Q ss_conf 899499998
Q 001535 649 ADNGFKILA 657 (1058)
Q Consensus 649 ~dg~i~iw~ 657 (1058)
.||+|++||
T Consensus 285 ~Dg~i~iWD 293 (293)
T d1p22a2 285 HDDTILIWD 293 (293)
T ss_dssp SSSEEEEEC
T ss_pred CCCEEEEEC
T ss_conf 299899959
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.7e-28 Score=209.56 Aligned_cols=217 Identities=12% Similarity=0.020 Sum_probs=115.0
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEE
Q ss_conf 14579856699998789998999968994999980289853000342045567679996269980699998189929999
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1058)
Q Consensus 401 ~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iw 480 (1058)
+..+|.+.|++++|+|++++||+|+.||+|++||+.++..........+|.++|.+++|++++.. ++++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCC-EEEECCCCCCEEEE
T ss_conf 68899897888999589999999979992999975699863689885589998899999589997-89981265311454
Q ss_pred E-CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 2-679734884154578569850236995099998407959999668998147762799817999984599989997306
Q 001535 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1058)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~ 559 (1058)
+ ..+........+........+... +...+++++.++.+++||++......... .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~--------------------~--- 140 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAV--------------------K--- 140 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEE--------------------E---
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCEEEE--------------------C---
T ss_conf 20443200000111111111111111-11111110122211102023444330230--------------------0---
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC-CCCCCCCCEEEEE
Q ss_conf 799954999938988135565066685202999917999999995998199997899822368506-8999997627850
Q 001535 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFS 638 (1058)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~i~~s 638 (1058)
.... ...........+.+.+..+++++.|+.|++|++........... ......+.+..+.
T Consensus 141 ----------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (342)
T d1yfqa_ 141 ----------NLNS--------NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202 (342)
T ss_dssp ----------ESCS--------SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred ----------CCCC--------CCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEE
T ss_conf ----------0243--------0012000001000168702465179847887605676341112102542210146763
Q ss_pred C-CCCEEEEEECCCCEEEEECCC
Q ss_conf 8-998999998899499998567
Q 001535 639 K-EGNLLAVTTADNGFKILANAI 660 (1058)
Q Consensus 639 ~-~~~~l~~~~~dg~i~iw~~~~ 660 (1058)
+ ++..+++++.||.+.+|+...
T Consensus 203 ~~~~~~~~~~s~dg~~~v~~~~~ 225 (342)
T d1yfqa_ 203 PKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp SGGGCEEEEEETTSEEEEEECCT
T ss_pred CCCCCEEEEECCCCEEEEEEECC
T ss_conf 69998788654899599998059
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.2e-28 Score=206.74 Aligned_cols=185 Identities=11% Similarity=0.031 Sum_probs=83.8
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 45798566999987899989999689949999802898530003420455676799962699806999981899299992
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+.||..+|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|++++. +++++.|+++++|+
T Consensus 9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~---~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE---YSSISWDDTLKVNG 73 (287)
T ss_dssp ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC---CEEEETTTEEEETT
T ss_pred ECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC--------CCCCCCCEEEEEECCCCE---EEEEEECCCCCCCC
T ss_conf 988798649999895----789848991999989998--------888778789999659972---89886101222111
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 67973488415457856985023699509999840795999966899814776279981799998459998999730679
Q 001535 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1058)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~ 561 (1058)
.... .....+..+.+.+++..++++.
T Consensus 74 -------------------------------------------~~~~-------~~~~~~~~~~~~~~~~~~~~~~---- 99 (287)
T d1pgua2 74 -------------------------------------------ITKH-------EFGSQPKVASANNDGFTAVLTN---- 99 (287)
T ss_dssp -------------------------------------------EEEE-------ECSSCEEEEEECSSSEEEEEET----
T ss_pred -------------------------------------------CCCC-------CCCCCEEEEEECCCCCEEEEEE----
T ss_conf -------------------------------------------1111-------1122101466416785699960----
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC-CEEEEECCCCCEEEEECCCCCCCCCCEEEEECC
Q ss_conf 9954999938988135565066685202999917999999995998-199997899822368506899999762785089
Q 001535 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1058)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~ 640 (1058)
+..+.+|+..+++.+..+..... ..++++++..+++++.++ .+++|++........... .+...+.+++|+|+
T Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 173 (287)
T d1pgua2 100 -DDDLLILQSFTGDIIKSVRLNSP----GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPS 173 (287)
T ss_dssp -TSEEEEEETTTCCEEEEEECSSC----EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTT
T ss_pred -CCCCEEEECCCEEEEEECCCCCE----EEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEECCC
T ss_conf -33210000110035431012220----3565214751110002210002100012210001210-24785369995167
Q ss_pred CCEEEEEECCCCEEEEECCCC
Q ss_conf 989999988994999985679
Q 001535 641 GNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
+.++++++.||.|++|+..++
T Consensus 174 ~~~l~~g~~dg~i~i~d~~~~ 194 (287)
T d1pgua2 174 ETYIAAGDVMGKILLYDLQSR 194 (287)
T ss_dssp SSEEEEEETTSCEEEEETTTT
T ss_pred CCCCCCCCCCCCCCCEEECCC
T ss_conf 652110111111000000233
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.8e-28 Score=207.96 Aligned_cols=286 Identities=11% Similarity=0.105 Sum_probs=182.0
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCC-CCE
Q ss_conf 3898389999605898089997332139999736897013456112114545765322214579856699998789-998
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNY 420 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd-g~~ 420 (1058)
+|++.|++++|+|+|+ +||+|+.||+|+|||+.++..... .....+|.++|.+++|+|+ +.+
T Consensus 9 ~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~----------------~~~~~~h~~~V~~v~f~~~~~~~ 71 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCCCEE----------------EEEECCCCCCEEEEEEECCCCCE
T ss_conf 9989788899958999-999997999299997569986368----------------98855899988999995899978
Q ss_pred EEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEE----EECCCC
Q ss_conf 9999689949999802898530003420455676799962699806999981899299992-67973488----415457
Q 001535 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN----FEGHEA 495 (1058)
Q Consensus 421 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~----~~~h~~ 495 (1058)
|++|+.|+.|++|+...+...... ...+........+.+++. .+++++.|+.+++|| ..+..... ...+..
T Consensus 72 l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 72 IYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred EEECCCCCCEEEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCC
T ss_conf 998126531145420443200000--111111111111111111--1111012221110202344433023000243001
Q ss_pred --CEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEE---EECCCCCEEEEEEC-CCCCEEEEEECCCCCCCEEEEE
Q ss_conf --85698502369950999984079599996689981477---62799817999984-5999899973067999549999
Q 001535 496 --PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEW 569 (1058)
Q Consensus 496 --~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~i~~s-~~~~~l~~~~~~~~~~~~i~iw 569 (1058)
......+.+ ++..+++++.|+.|++|++........ .........+..+. .++..+++++. ++.+.+|
T Consensus 148 ~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~~v~ 221 (342)
T d1yfqa_ 148 KVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DGRVAVE 221 (342)
T ss_dssp SSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TSEEEEE
T ss_pred CCEEEEEEEEC--CCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECC----CCEEEEE
T ss_conf 20000010001--68702465179847887605676341112102542210146763699987886548----9959999
Q ss_pred ECCCCCEEE------EE---------ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCE
Q ss_conf 389881355------65---------066685202999917999999995998199997899822368506899999762
Q 001535 570 NESEGTIKR------TY---------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1058)
Q Consensus 570 d~~~~~~~~------~~---------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1058)
+........ .+ ..|. ..+.+++|+|++.+|++|+.||.|++||+.+++.+..+... + ....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~--~~~~ 297 (342)
T d1yfqa_ 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-N--EDSV 297 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-S--SSEE
T ss_pred EECCCCCEEECCCCCEEEEEEECCCCCCCC-CCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCC-C--CCEE
T ss_conf 805986401112351256555314777623-54315996698447999879998999999989498870589-9--9879
Q ss_pred EEEECCCCEEEEEECCCCEEEEEC
Q ss_conf 785089989999988994999985
Q 001535 635 LRFSKEGNLLAVTTADNGFKILAN 658 (1058)
Q Consensus 635 i~~s~~~~~l~~~~~dg~i~iw~~ 658 (1058)
++|+|+++.+++++.|+.+++|..
T Consensus 298 ~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 298 VKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECSSEEEEEEECTHHHHCSS
T ss_pred EEEEECCCEEEEEECCCCEEEEEE
T ss_conf 999947999999991992788301
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.7e-26 Score=195.52 Aligned_cols=172 Identities=10% Similarity=0.083 Sum_probs=73.1
Q ss_pred CCCCEEEEEEECCCCEEEEEE--CCCEEEEECCCCEEEEEECCC--CCCEEEEEEECCCCCEEE--EEECCCCEEEEECC
Q ss_conf 998841999813998999993--991999977985099994299--998359999269996999--99799979999843
Q 001535 830 LEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIA--IGTEDSTIHIYNVR 903 (1058)
Q Consensus 830 ~~~~v~~i~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~la--sg~~dg~i~iwd~~ 903 (1058)
+...+..+++++++++++++. ++.+.+++..+++........ ........+.......+. ..+.|+.+.+|+..
T Consensus 205 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~ 284 (426)
T d1hzua2 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD 284 (426)
T ss_dssp CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred CCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECC
T ss_conf 67753761377888678864201100000002556278875058744434201100698774577415789659885225
Q ss_pred C-------CEEEEEECCCCCCEEEEEECCCCCEEEE-------EECCCCEEEEECCCCCEECEEEEEC---CCCCCCCCC
Q ss_conf 7-------6433673256788469998189998999-------9399959999878884010289832---799899994
Q 001535 904 V-------DEVKSKLKGHQKRITGLAFSTSLNILVS-------SGADAQLCVWSIDTWEKRKSVTIHI---PAGKTPTGD 966 (1058)
Q Consensus 904 ~-------~~~~~~~~~h~~~V~~l~~s~d~~~l~s-------~s~Dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~v 966 (1058)
. ++....+.+|...+..++|+||+++|++ ++.|++|++||+.+++....+.... ........+
T Consensus 285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv 364 (426)
T d1hzua2 285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 364 (426)
T ss_dssp TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCE
T ss_pred CCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCE
T ss_conf 66520330258689866887636787489986188850679880228879999898787670895021102567788518
Q ss_pred EEEEECCCCCEEEEE------ECCEEEEEECCCCEEEEEEC
Q ss_conf 089985799899999------78839999877880333411
Q 001535 967 TRVQFNADQVRMLVV------HETQLAIYDASKMERIRQWT 1001 (1058)
Q Consensus 967 ~~i~fs~d~~~l~~~------~d~~i~i~d~~~~~~~~~~~ 1001 (1058)
.+++|||||++++++ .++.|.+||.++++....+.
T Consensus 365 ~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~ 405 (426)
T d1hzua2 365 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 405 (426)
T ss_dssp EEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEC
T ss_conf 98799999999999972488889829999999873899987
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=2e-29 Score=215.91 Aligned_cols=200 Identities=15% Similarity=0.107 Sum_probs=141.4
Q ss_pred EEEEEC-CCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 999605-8980899973321399997368970134561121145457653222145798566999987899989999689
Q 001535 349 SMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1058)
Q Consensus 349 ~v~~sp-~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d 427 (1058)
.-.||| ||+ ++|+++ +|.|.+||..++..+. .+|...|.+++|||||++|++++.+
T Consensus 7 ~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~~ 63 (360)
T d1k32a3 7 AEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGTR 63 (360)
T ss_dssp EEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEET
T ss_pred CCCCCCCCCC-EEEEEE-CCEEEEEECCCCCEEE---------------------CCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 0514688999-999998-9969999899994899---------------------1699988889998999999999928
Q ss_pred C--EEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECCCCCEEEEEECC
Q ss_conf 9--49999802898530003420455676799962699806999981899299992-67973488415457856985023
Q 001535 428 H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1058)
Q Consensus 428 g--~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~i~~~~ 504 (1058)
. .|++||..+++.. .+..|...|.+++|+||++ ++++++.++.+++|+ .+++....+..+...+.+++|++
T Consensus 64 ~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 137 (360)
T d1k32a3 64 EGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 137 (360)
T ss_dssp TEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred CCCEEEEEECCCCCEE----EEECCCCEEEEEEECCCCC--CCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCC
T ss_conf 9989999989999488----7508971277412114543--210001111100000122210000001355202301213
Q ss_pred CCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 69950999984079599996689981477627998179999845999899973067999549999389881355650666
Q 001535 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1058)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1058)
++++|+.+..+..... . ...+..+++|+..+++........
T Consensus 138 --dg~~la~~~~~~~~~~--------------------------------~----~~~~~~~~v~d~~~~~~~~~~~~~- 178 (360)
T d1k32a3 138 --NSRFIAYGFPLKHGET--------------------------------D----GYVMQAIHVYDMEGRKIFAATTEN- 178 (360)
T ss_dssp --TSCEEEEEEEECSSTT--------------------------------C----SCCEEEEEEEETTTTEEEECSCSS-
T ss_pred --CEEEEEEECCCCCCCE--------------------------------E----ECCCCCEEEECCCCCCEEEECCCC-
T ss_conf --2256652123312110--------------------------------0----025654266304557135303543-
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 852029999179999999959981999978998
Q 001535 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1058)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1058)
. ....+.|+|++++|++++.++.+.+|+....
T Consensus 179 ~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 179 S-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp S-BEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred C-CCCCCCCCCCCCEEEEEECCCCEECCCCCCC
T ss_conf 2-2110012577999999959985575333544
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.1e-27 Score=199.24 Aligned_cols=259 Identities=10% Similarity=0.123 Sum_probs=110.4
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 89838999960589808999733213999973689701345611211454576532221457985669999878999899
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 422 (1058)
|..+|++++|+| |++|+.||+|++||+.++ ..+|...|.++++++++ .++
T Consensus 12 H~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~~~~~-~~~ 61 (287)
T d1pgua2 12 HNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDNSKAQ-EYS 61 (287)
T ss_dssp CSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEECCSTT-CCE
T ss_pred CCCCEEEEEECC-----EEEEECCCEEEEEECCCC------------------------CCCCCCCEEEEEECCCC-EEE
T ss_conf 798649999895-----789848991999989998------------------------88877878999965997-289
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECCCCCEEEEE
Q ss_conf 99689949999802898530003420455676799962699806999981899299992-67973488415457856985
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~i~ 501 (1058)
+++.|+++++|+....+ ....+..+.+.+++. .++++ .++.+.+|+ .++..+..+..+ ..+.+++
T Consensus 62 s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 127 (287)
T d1pgua2 62 SISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVLT-NDDDLLILQSFTGDIIKSVRLN-SPGSAVS 127 (287)
T ss_dssp EEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEEE-TTSEEEEEETTTCCEEEEEECS-SCEEEEE
T ss_pred EEEECCCCCCCCCCCCC----------CCCCEEEEEECCCCC--EEEEE-ECCCCEEEECCCEEEEEECCCC-CEEEEEE
T ss_conf 88610122211111111----------122101466416785--69996-0332100001100354310122-2035652
Q ss_pred ECCCCCCEEEEEEEEC-CEEEEEECCCCCCEEEEE-CCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEE
Q ss_conf 0236995099998407-959999668998147762-79981799998459998999730679995499993898813556
Q 001535 502 PHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1058)
Q Consensus 502 ~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1058)
+. +..+++++.+ +.+++|++.......... .+...+.+++|+|++.++++++. ++.|++||..++.....
T Consensus 128 --~~--~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~~~~~~~~~ 199 (287)
T d1pgua2 128 --LS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDLQSREVKTS 199 (287)
T ss_dssp --EC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEC
T ss_pred --CC--CCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC----CCCCCCEEECCCCCCCC
T ss_conf --14--75111000221000210001221000121024785369995167652110111----11100000023321100
Q ss_pred -EECCCCCCEEEEEECCC----------CCEEEEEECCCCEEEEECCCC-CEEEEECCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf -50666852029999179----------999999959981999978998-223685068999997627850899899999
Q 001535 580 -YAGFRKKSNGVVQFDTT----------QNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1058)
Q Consensus 580 -~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 647 (1058)
+.+|.. .+.+++|+|. +.++++++.|+.|++|++... +.+..+. +|...|.+++|+|++ .++++
T Consensus 200 ~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~--~h~~~V~~v~~~~~~-~l~s~ 275 (287)
T d1pgua2 200 RWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPS-TLVSS 275 (287)
T ss_dssp CSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETT-EEEEE
T ss_pred CCCCCCC-CCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEC--CCCCCEEEEEECCCC-EEEEE
T ss_conf 0111111-1100000136541001267887027664999599988899975899927--878985899998999-89999
Q ss_pred ECCCCEEEEE
Q ss_conf 8899499998
Q 001535 648 TADNGFKILA 657 (1058)
Q Consensus 648 ~~dg~i~iw~ 657 (1058)
+.|+.|++|+
T Consensus 276 g~D~~v~iW~ 285 (287)
T d1pgua2 276 GADACIKRWN 285 (287)
T ss_dssp ETTSCEEEEE
T ss_pred ECCCEEEEEE
T ss_conf 7999299999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.1e-26 Score=192.92 Aligned_cols=234 Identities=16% Similarity=0.263 Sum_probs=171.4
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 45798566999987899989999689949999802898530003420455676799962699806999981899299992
Q 001535 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 402 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
..+|...|+|++| ||++||+|+.||+|++||+.+++.++ ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred CCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEC--CCC--EEECCCCCCCCCCCC
T ss_conf 2899998899987--69999999289939999999991999---99267787763423--630--021001110110000
Q ss_pred -CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEE---EEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf -679734884154578569850236995099998407959999668998147---7627998179999845999899973
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~i~~s~~~~~l~~~~ 557 (1058)
..+........+......... ....++++..++.+.+|+........ ....+...+....+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC----CCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCC
T ss_conf 0246410011111100001111----110000013566306861344544421210001135431100000--2201106
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE
Q ss_conf 06799954999938988135565066685202999917999999995998199997899822368506899999762785
Q 001535 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1058)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~ 637 (1058)
.++.+++||..+++.+..+.++.. .+..+.++ +..+++++.|+.|++||+.+...+.....+.. .+ ..+
T Consensus 156 ----~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~ 224 (293)
T d1p22a2 156 ----GDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCI 224 (293)
T ss_dssp ----TTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EEE
T ss_pred ----CCCCEEEECCCCCCEEEEECCCCC-CCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCE--EE--EEC
T ss_conf ----998604100788838899715544-53221689--87588765899899986655614665214310--00--001
Q ss_pred ECCCCEEEEEECCCCEEEEECCCC
Q ss_conf 089989999988994999985679
Q 001535 638 SKEGNLLAVTTADNGFKILANAIG 661 (1058)
Q Consensus 638 s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1058)
++++.++++++.||.|++|++...
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHH
T ss_pred CCCCEEEEEECCCCEEEEEECCCC
T ss_conf 454107999867997999988888
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=3.5e-29 Score=214.25 Aligned_cols=201 Identities=13% Similarity=0.063 Sum_probs=153.9
Q ss_pred EEEECC-CCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECC--CCEEEEECCCCEE
Q ss_conf 999878-9998999968994999980289853000342045567679996269980699998189--9299992679734
Q 001535 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWELSGRKL 487 (1058)
Q Consensus 411 ~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~ 487 (1058)
.-.||| ||+++|+++ +|.|++||..++...+ + +|...|.+++|+|||+ .|++++.+ ..|++||..+...
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE
T ss_pred CCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEE----C-CCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEECCCCCE
T ss_conf 0514688999999998-9969999899994899----1-6999888899989999--99999928998999998999948
Q ss_pred EEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEE
Q ss_conf 88415457856985023699509999840795999966899814776279981799998459998999730679995499
Q 001535 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1058)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~ 567 (1058)
..+..|...+.+++|+| +++++++++.++.+++|+.........+..+...+.+++|+|+|++++.+.... .
T Consensus 79 ~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~----~-- 150 (360)
T d1k32a3 79 EKFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK----H-- 150 (360)
T ss_dssp EECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEEC----S--
T ss_pred EEEECCCCEEEEEEECC--CCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCC----C--
T ss_conf 87508971277412114--543210001111100000122210000001355202301213225665212331----2--
Q ss_pred EEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf 99389881355650666852029999179999999959981999978998223685068999997627850899899999
Q 001535 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1058)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 647 (1058)
..+.+..++.+++|+..+++....... ...+..++|+|+|+.|+++
T Consensus 151 -------------------------------~~~~~~~~~~~~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 151 -------------------------------GETDGYVMQAIHVYDMEGRKIFAATTE---NSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp -------------------------------STTCSCCEEEEEEEETTTTEEEECSCS---SSBEEEEEECTTSCEEEEE
T ss_pred -------------------------------CCEEECCCCCEEEECCCCCCEEEECCC---CCCCCCCCCCCCCCEEEEE
T ss_conf -------------------------------110002565426630455713530354---3221100125779999999
Q ss_pred ECCCCEEEEECCCC
Q ss_conf 88994999985679
Q 001535 648 TADNGFKILANAIG 661 (1058)
Q Consensus 648 ~~dg~i~iw~~~~~ 661 (1058)
+.++.+.+|+....
T Consensus 197 s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 197 SYRSLDPSPDRVVL 210 (360)
T ss_dssp ESCCCCCEECSSSS
T ss_pred ECCCCEECCCCCCC
T ss_conf 59985575333544
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=6e-27 Score=198.73 Aligned_cols=364 Identities=10% Similarity=0.009 Sum_probs=203.3
Q ss_pred CCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEE--EEE---
Q ss_conf 99989999689949999802898530003420455676799962699806999981899299992-679734--884---
Q 001535 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNF--- 490 (1058)
Q Consensus 417 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~--~~~--- 490 (1058)
+.-++++.+.+|+|.+||..+++.++ .+..+ ..+..++|+|||+ ++++++.|+.+.+|| .+++.. ..+
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~ 104 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 104 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred CCEEEEEECCCCEEEEEECCCCCEEE---EEECC-CCEEEEEECCCCC--EEEEECCCCCEEEEEEECCCCEEEEEEECC
T ss_conf 82899997699979999899983999---97379-9713799889999--999982899978998108981288998448
Q ss_pred ECCCCCEEEEEECCCCCCEEE-EEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 154578569850236995099-9984079599996689981477627998179999845999899973067999549999
Q 001535 491 EGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1058)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1058)
.+|.+.+.+.+|+ +||+++ +++..++.+++||..+++....+..+...+....+.++
T Consensus 105 ~~~~~~~~s~~~S--pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~-------------------- 162 (432)
T d1qksa2 105 SEARSIETSKMEG--WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE-------------------- 162 (432)
T ss_dssp SEEEEEEECCSTT--CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC--------------------
T ss_pred CCCCCEEEECCCC--CCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCC--------------------
T ss_conf 8987769843218--888889998178982799907655422540247764352201688--------------------
Q ss_pred ECCCCCEEEEEECCCCCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEE
Q ss_conf 389881355650666852029999179999999-9599819999789982236850689999976278508998999998
Q 001535 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1058)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 648 (1058)
.....+.+++++..++. ...++.|.+|+..+.+.......... .....++|+|+|+++++++
T Consensus 163 ----------------~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 163 ----------------PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAA 225 (432)
T ss_dssp ----------------CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEE
T ss_pred ----------------CCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCC-CCCCCCEECCCCCEEEEEC
T ss_conf ----------------85058998789998999981688299998437875227998336-7542653889887999951
Q ss_pred C-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8-994999985679610011249874344686420243103553102589986100025889887621488888778898
Q 001535 649 A-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (1058)
Q Consensus 649 ~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1058)
. ++.+.+++..++. ...........
T Consensus 226 ~~~~~v~v~d~~~~~-~~~~~~~g~~~----------------------------------------------------- 251 (432)
T d1qksa2 226 NARNKLVVIDTKEGK-LVAIEDTGGQT----------------------------------------------------- 251 (432)
T ss_dssp GGGTEEEEEETTTTE-EEEEEECSSSS-----------------------------------------------------
T ss_pred CCCCEEEEEECCCCE-EEEEECCCCCC-----------------------------------------------------
T ss_conf 666367776144526-88872148622-----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 83137888998753013564189627997168878856379999833765289831-26706886520344698985222
Q 001535 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATA 806 (1058)
Q Consensus 728 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg~i~iw~~~~~~~~~~g~~~~ 806 (1058)
.+........+...+....+.. .++.+.+|......
T Consensus 252 ----------------------------------~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~--------- 288 (432)
T d1qksa2 252 ----------------------------------PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG--------- 288 (432)
T ss_dssp ----------------------------------BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT---------
T ss_pred ----------------------------------CCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCC---------
T ss_conf ----------------------------------4567664101489883102135688358762456655---------
Q ss_pred CCCCEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 22530103688752453015888998841999813998999993-99199997798509999429999835999926999
Q 001535 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885 (1058)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 885 (1058)
... +...+....+++++..+++++ ++..++|...+.. .|......+++ | |+
T Consensus 289 ------------------~~~--~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg 340 (432)
T d1qksa2 289 ------------------HPD--NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DI 340 (432)
T ss_dssp ------------------CTT--TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EG
T ss_pred ------------------CCC--CCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC------CCCCEEEEEEE-E-EC
T ss_conf ------------------546--56577799886899768887268864102112678------88770359999-9-62
Q ss_pred CEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEECEE
Q ss_conf 6999997999799998437643367325678846999818999899993-----9995999987888401028
Q 001535 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG-----ADAQLCVWSIDTWEKRKSV 953 (1058)
Q Consensus 886 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s-----~Dg~i~iwd~~~~~~~~~~ 953 (1058)
+.+++++.|+.+++|++.++.. +..|...|..++|||||++++.+. .++.|+|||..+++....+
T Consensus 341 ~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i 410 (432)
T d1qksa2 341 KAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 410 (432)
T ss_dssp GGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred HHHCCCCCCCCEEECCCCCCCC---CCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEE
T ss_conf 4610455678448633434444---578998689767989999999997048888886899999995588684
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=2.4e-21 Score=159.74 Aligned_cols=267 Identities=10% Similarity=0.059 Sum_probs=179.1
Q ss_pred EEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EEECCCEEEEEEEC
Q ss_conf 08999733213999973689701345611211454576532221457985669999878999899-99689949999802
Q 001535 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VAFTKHLIQLYSYA 436 (1058)
Q Consensus 358 ~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la-s~~~dg~i~iwd~~ 436 (1058)
++.++++.|++|.+||+.+++.+.+ +. ....+..++|||||++|+ +++.++.|.+||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCEEEEE-------------------EE-CCCCCEEEEEECCCCEEEEEECCCCEEEEEECC
T ss_conf 9999978999899999999959999-------------------98-899836999928989999997899989999999
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCCEEE-EEE
Q ss_conf 898530003420455676799962699806999981899299992-679734884154578569850236995099-998
Q 001535 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FST 514 (1058)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~ 514 (1058)
+++.+. ++..+. .+..+.|++++.. .++++..++.+.+|+ .+++....+..+ ....++++.+ ++..+ +++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCCEEE---EEECCC-CCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCEEEEECCCC-CCCEEEEEEC--CCCEEEEEE
T ss_conf 894103---200024-6431100011111-1111111100110012430243202444-4423787605--897155420
Q ss_pred EECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 40795999966899814776279981799998459998999730679995499993898813556506668520299991
Q 001535 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (1058)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 594 (1058)
..++.+.+|+..+......+... .....+.+++++..++++.. ....+.+|+....+.......+. ....+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 208 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCCEEEEECCCCCEEEECCCC-CCCEEEEEECCCCCEEEECC---CCCCCCCCCCCCEEEEECCCCCC--CCCEEECC
T ss_conf 11110011000146303531567-88428886046540131012---11111111111000111013357--75031101
Q ss_pred CCCCEEEEEE---CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEE-EEEECCCCEEEEECCCC
Q ss_conf 7999999995---9981999978998223685068999997627850899899-99988994999985679
Q 001535 595 TTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIG 661 (1058)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iw~~~~~ 661 (1058)
+++..+++++ .++.|++||..+++....+.... .+.+++|+|||+++ ++++.++.|++||+.++
T Consensus 209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCC---CEEEEEEECCCCEEEEEECCCCEEEEEECCCC
T ss_conf 111011110021000023236569981999984899---87799991898999999899996999999999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=5.5e-21 Score=157.25 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=21.4
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCEEEEEE
Q ss_conf 399998778803334112788988979999901898999-9968993999968998298998
Q 001535 985 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADTLRLRCYI 1045 (1058)
Q Consensus 985 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-t~~~dg~i~iw~~~~~~~~~~~ 1045 (1058)
.+.+||..+++.+..+.. ...+..++|+|||++|+ ++..|+.|.+||+.+++.+..+
T Consensus 225 ~v~v~D~~t~~~~~~~~~----~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 225 TVSMIDTGTNKITARIPV----GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282 (301)
T ss_dssp EEEEEETTTTEEEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCEEEEEECC----CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 232365699819999848----9987799991898999999899996999999999599999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1.5e-21 Score=161.15 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=48.7
Q ss_pred EEEEECCCCEEEEE-ECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 99997798509999-42999983599992699969999979997999984376433673256788469998189998999
Q 001535 854 ISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS 932 (1058)
Q Consensus 854 i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s 932 (1058)
+.+|+..++..... +..+...+.++.+++ ++.+++.+ ++.+++||+.+++.+..+. +...+.+++|+|||++|++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v 296 (337)
T d1pbyb_ 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCEEEEEECC-CCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEE
T ss_conf 799986888588898328875058887426-61399973--5528999898896999974-8998899999789999999
Q ss_pred EECCCCEEEEECCCCCEECEEEE
Q ss_conf 93999599998788840102898
Q 001535 933 SGADAQLCVWSIDTWEKRKSVTI 955 (1058)
Q Consensus 933 ~s~Dg~i~iwd~~~~~~~~~~~~ 955 (1058)
++.|+.|++||..+++.+..+..
T Consensus 297 ~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 297 GGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ESBSSEEEEEETTTCCEEEEEEC
T ss_pred EECCCCEEEEECCCCCEEEEEEC
T ss_conf 94999299999998769899988
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=2.6e-22 Score=166.44 Aligned_cols=76 Identities=12% Similarity=-0.005 Sum_probs=47.5
Q ss_pred EEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEEC-CCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEE
Q ss_conf 9987899989999689949999802898530003420-455676799962699806999981899299992-67973488
Q 001535 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1058)
Q Consensus 412 i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~ 489 (1058)
++|++++++|++++.+++|.+||+.+++.++ ++. .+...+.+++|+|||+. +++++..++.|++|| .+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEE---EEECCCCCCCCEEEECCCCCE-EEEEECCCCCEEEEECCCCEEEEE
T ss_conf 5588999699998699979999999998999---999489997045999789899-999978999399996756713123
Q ss_pred EE
Q ss_conf 41
Q 001535 490 FE 491 (1058)
Q Consensus 490 ~~ 491 (1058)
+.
T Consensus 78 ~~ 79 (346)
T d1jmxb_ 78 AN 79 (346)
T ss_dssp EE
T ss_pred EC
T ss_conf 10
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=1.3e-22 Score=168.48 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=67.8
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE
Q ss_conf 99884199981399899999399199997798509999429999835999926999699999799979999843764336
Q 001535 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1058)
Q Consensus 830 ~~~~v~~i~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~ 909 (1058)
+......+++++++.+++.+ ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.|++|++||..+++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~ 315 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCCCEEEEEC-CCCEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEE
T ss_conf 87505888742661399973-5528999898896999974-899889999978-99999999499929999999876989
Q ss_pred EECCC
Q ss_conf 73256
Q 001535 910 KLKGH 914 (1058)
Q Consensus 910 ~~~~h 914 (1058)
++...
T Consensus 316 ~i~~~ 320 (337)
T d1pbyb_ 316 QVDLP 320 (337)
T ss_dssp EEECG
T ss_pred EEECC
T ss_conf 99889
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=2.4e-21 Score=159.81 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=37.3
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE
Q ss_conf 99884199981399899999399199997798509999429999835999926999699999799979999843764336
Q 001535 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1058)
Q Consensus 830 ~~~~v~~i~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~ 909 (1058)
+...+..+.+++++.+++...++.+.+||..+++.+..+. +...+.+++|+| ||++|++++.|+.|++||..+++.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 250 LTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVK 327 (346)
T ss_dssp CSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred CCCEEEEEEEECCCCEEEEECCCEEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEE
T ss_conf 5660688897179978999429838999899993999974-999778999968-99999999489929999996587979
Q ss_pred EECC
Q ss_conf 7325
Q 001535 910 KLKG 913 (1058)
Q Consensus 910 ~~~~ 913 (1058)
++..
T Consensus 328 ~i~~ 331 (346)
T d1jmxb_ 328 NIKL 331 (346)
T ss_dssp EEEC
T ss_pred EEEC
T ss_conf 9988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.91 E-value=2.3e-18 Score=138.94 Aligned_cols=332 Identities=8% Similarity=-0.024 Sum_probs=177.2
Q ss_pred CCCCCCEEEEEECCCCCEEEEE-----ECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEE------
Q ss_conf 5798566999987899989999-----68994999980289853000342045567679996269980699998------
Q 001535 403 KDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC------ 471 (1058)
Q Consensus 403 ~~h~~~V~~i~~spdg~~las~-----~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~------ 471 (1058)
..+.+++.+++++|||+.+++. +..+.|.+||..+++.+. ++..+..+ .++|+|||+ +++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEE---EEECCCCC--CEEECCCCC--EEEEEEECCCC
T ss_conf 567898656301899978999734225787659999899997999---99579886--079868999--89999605775
Q ss_pred ----ECCCCEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEE
Q ss_conf ----1899299992-67973488415457856985023699509999840795999966899814776279981799998
Q 001535 472 ----GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY 546 (1058)
Q Consensus 472 ----~~d~~i~iwd-~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 546 (1058)
..++.|.+|| .+++.+..+..+......+...+ ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN 132 (373)
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCC-------------------------------------CCEEE
T ss_conf 32124531899997778938889726885136851689-------------------------------------70899
Q ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 459998999730679995499993898813556506668520299991799999-9995998199997899822368506
Q 001535 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTDA 625 (1058)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1058)
+++++.++.... +.+..+.+|+....+...... ...++.+++++..+ ++.+.|+.+.+|+...+........
T Consensus 133 s~dg~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 133 TPNNADLLFFQF--AAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EECCCCEEEEEE--CCCCCEEEEECCCCEEEEEEC-----CCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEE
T ss_conf 858993799998--698746776236872899824-----5206999628991999994799399997477426678863
Q ss_pred CC----CCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 89----99997627850899899999889949999856796100112498743446864202431035531025899861
Q 001535 626 EG----GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC 701 (1058)
Q Consensus 626 ~~----~~~~v~~i~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~ 701 (1058)
.. .........+++++. ++..+.++.+.+|+...+.......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~--------------------------------- 251 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAP--------------------------------- 251 (373)
T ss_pred ECCCCCCCCEEEEEEECCCCE-EEEECCCCEEEEEECCCCEEEEEEE---------------------------------
T ss_conf 003667530434588789942-9992589659999768990789776---------------------------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 00025889887621488888778898831378889987530135641896279971688788563799998337652898
Q 001535 702 KVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA 781 (1058)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~ 781 (1058)
++. .........+.|.....++
T Consensus 252 ---------------------------------------~~~-------------------~~~~~~~~~~~~~~~~~~~ 273 (373)
T d2madh_ 252 ---------------------------------------IDA-------------------LSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred ---------------------------------------ECC-------------------CCCCEEEEEECCCCCEEEE
T ss_conf ---------------------------------------305-------------------6475786641367413357
Q ss_pred EECCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEECC
Q ss_conf 312670688652034469898522222530103688752453015888998841999813998999993-9919999779
Q 001535 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM 860 (1058)
Q Consensus 782 ~~~dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~-dg~i~iwd~~ 860 (1058)
...++.. ...+..++..++... ++.+.+||..
T Consensus 274 ~~~d~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~v~~~d~~ 306 (373)
T d2madh_ 274 YLKSSDG-----------------------------------------------IYLLTSEQSAWKLHAAAKEVTSVTGL 306 (373)
T ss_pred EECCCCE-----------------------------------------------EEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 7149975-----------------------------------------------99954888247862589869999899
Q ss_pred CCEEEEEECCCCCCEEEEEEECCCCC--EEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf 85099994299998359999269996--9999979997999984376433673256788469998189
Q 001535 861 TFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (1058)
Q Consensus 861 ~~~~~~~~~~~~~~i~~l~~s~~~~~--~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 926 (1058)
+++.+..+. +...+.+++|+| ||+ ++++++.|++|++||+.+++.+.++.++....+.+++.++
T Consensus 307 t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 307 VGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECC
T ss_conf 996989866-899825899998-999899999679992999999999899998888989818998468
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.89 E-value=1.4e-17 Score=133.52 Aligned_cols=156 Identities=6% Similarity=-0.114 Sum_probs=73.4
Q ss_pred CCCCEEEEEEECCCCEEEEEE----ECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 898389999605898089997----3321399997368970134561121145457653222145798566999987899
Q 001535 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~g----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg 418 (1058)
+..++.+++++|||++++++. +..+.|.+||..+++.+.. +..+.. ..++|||||
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpDG 77 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHSG 77 (373)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEE-------------------EECCCC--CCEEECCCC
T ss_conf 78986563018999789997342257876599998999979999-------------------957988--607986899
Q ss_pred CEEEEEE----------CCCEEEEEEECCCCCCEEEEEECCCCCCE-------EEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 9899996----------89949999802898530003420455676-------799962699806999981899299992
Q 001535 419 NYVGVAF----------TKHLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 419 ~~las~~----------~dg~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~i~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
++|+++. .++.|.+||..+++.... +..+.... ..+.|+++++.+++.....++.+.+|+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEE---EECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 98999960577532124531899997778938889---726885136851689708998589937999986987467762
Q ss_pred -CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCC
Q ss_conf -6797348841545785698502369950999984079599996689
Q 001535 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1058)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1058)
...+.... .....++.+++.+. ..+++.+.|+.+.+|+...
T Consensus 155 ~~~~~~~~~----~~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~ 196 (373)
T d2madh_ 155 QGGSSDDQL----LSSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAG 196 (373)
T ss_pred CCCCEEEEE----ECCCEEEEEECCCC-CEEEEECCCCEEEEEECCC
T ss_conf 368728998----24520699962899-1999994799399997477
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=7.5e-18 Score=135.43 Aligned_cols=178 Identities=15% Similarity=0.187 Sum_probs=94.3
Q ss_pred EEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEEECC
Q ss_conf 8999733213999973689701345611211454576532221457985669999878999899996-899499998028
Q 001535 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAG 437 (1058)
Q Consensus 359 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~-~dg~i~iwd~~~ 437 (1058)
++++++.|++|++|++.....+... ....|.+.+..++|||||++|++++ .|+.|.+|++..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~-----------------~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLT-----------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEE-----------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEECCCCCCEEEEEECCCCCEEEE-----------------EEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEC
T ss_conf 9998789993899998399976999-----------------99757998868999589799999977899699999968
Q ss_pred CCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEE-CCCCEEEEE-CCCCEE--EEEECCCCCEEEEEECCCCCCEEEEE
Q ss_conf 98530003420455676799962699806999981-899299992-679734--88415457856985023699509999
Q 001535 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFS 513 (1058)
Q Consensus 438 ~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~-~d~~i~iwd-~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s 513 (1058)
............+...+..++|+|||+ ++++++ .++.+.+|+ ...... .....+...+.++.+++ +++.++.
T Consensus 69 ~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~~ 144 (333)
T d1ri6a_ 69 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLWV 144 (333)
T ss_dssp TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEEE
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCC--EEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEE--CCEEEEC
T ss_conf 987079853013699854999959998--874205688830220011100000010037785314988630--1013102
Q ss_pred EE-ECCEEEEEECCCCCCEEE------EECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 84-079599996689981477------627998179999845999899973
Q 001535 514 TA-IDGKIKAWLYDTMGSRVD------YDAPGHWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 514 ~~-~dg~i~iwd~~~~~~~~~------~~~~~~~i~~i~~s~~~~~l~~~~ 557 (1058)
++ .+..+.+|+......... ....+.....++|++++..++...
T Consensus 145 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~ 195 (333)
T d1ri6a_ 145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN 195 (333)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEEEEC
T ss_conf 565542056897326874100100013340388752799960201478620
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=2.2e-17 Score=132.20 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=57.6
Q ss_pred EEEEECCEEEEEECCCCCCEE--EEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEEC--CCCCC
Q ss_conf 998407959999668998147--76279981799998459998999730679995499993898813556506--66852
Q 001535 512 FSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG--FRKKS 587 (1058)
Q Consensus 512 ~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~ 587 (1058)
+++..|+.|++|+++...... ....+...+..++|+|||++|++++. .++.|.+|++.......++.. .....
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEC---CCCEEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 9878999389999839997699999757998868999589799999977---8996999999689870798530136998
Q ss_pred EEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEC-CCCEEEEECC
Q ss_conf 02999917999999995-998199997899822368506899999762785089989999988-9949999856
Q 001535 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1058)
Q Consensus 588 i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i~iw~~~ 659 (1058)
...++|+|+++++++++ .++.+.+|+..............+...+.++.++|+++.++.++. +..+.+|+..
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~ 158 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS 158 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEEC
T ss_conf 54999959998874205688830220011100000010037785314988630101310256554205689732
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=6.1e-18 Score=136.06 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=37.5
Q ss_pred CEEEEECCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECC
Q ss_conf 1999977985099994299998359999269996--999997999799998437643367325678846999818
Q 001535 853 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 925 (1058)
Q Consensus 853 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 925 (1058)
.|.+||..+++.+..+.. ...+.+++|+| ||+ +++++..|+.|++||..+++.+.++.++...-..+.+.+
T Consensus 281 ~v~v~d~~t~~~~~~~~~-~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 281 FVVVLDAKTGERLAKFEM-GHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353 (355)
T ss_dssp EEEEEETTTCCEEEEEEE-EEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred EEEEEECCCCCEEEEECC-CCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEECC
T ss_conf 599986788849899668-99877999928-99969999978999899999999989999928697965899699
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=9.9e-18 Score=134.57 Aligned_cols=50 Identities=6% Similarity=0.070 Sum_probs=28.4
Q ss_pred CCEEEEEEECCCCE--EEEEE-CCCEEEEECCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 88419998139989--99993-9919999779850999942999983599992
Q 001535 832 EAVPCIALSKNDSY--VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH 881 (1058)
Q Consensus 832 ~~v~~i~~s~dg~~--la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 881 (1058)
..+.+++|+|||+. ++++. ++.|.+||.++++.++++.++.....++.+.
T Consensus 300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~ 352 (355)
T d2bbkh_ 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352 (355)
T ss_dssp EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECC
T ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEEC
T ss_conf 98779999289996999997899989999999998999992869796589969
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.83 E-value=5.2e-16 Score=122.63 Aligned_cols=161 Identities=14% Similarity=0.199 Sum_probs=105.4
Q ss_pred EEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC--
Q ss_conf 999605898089997332139999736897013456112114545765322214579856699998789998999968--
Q 001535 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-- 426 (1058)
Q Consensus 349 ~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~-- 426 (1058)
.+.|.++++ ++.. .++.+.+||+.+++.... +....+..|...|.++.|||||++|+.++.
T Consensus 21 ~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEECCCCE-EEEE--CCCCEEEEECCCCCEEEE--------------ECHHHHHHCCCCCCEEEECCCCCEEEEEECCC
T ss_conf 789689997-9997--599499998899978999--------------70156443167654059989889799997771
Q ss_pred -------CCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECCCCCEE
Q ss_conf -------9949999802898530003420455676799962699806999981899299992-67973488415457856
Q 001535 427 -------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1058)
Q Consensus 427 -------dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~ 498 (1058)
++.+.+||+.+++.. .+..+...+..+.|||||+ .++... ++.+++|+ ..+...+....+...+
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~- 155 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI- 155 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-
T ss_pred CEEEECCCCEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCCC--EEEEEE-CCCCEEEECCCCCEEEEEECCCCCC-
T ss_conf 0001046734999989888513----1246874231010146764--135751-4641379889994653210147774-
Q ss_pred EEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 9850236995099998407959999668998147762799817999984599989997306
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1058)
Q Consensus 499 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~ 559 (1058)
...+..| |... .........+.|+|||+.++....+
T Consensus 156 ------------~~~g~~d-----~~~~--------~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 156 ------------IYNGITD-----WVYE--------EEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp ------------EEESBCC-----HHHH--------HHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred ------------CCCCCCC-----EEEE--------EEECCCCCCCEECCCCCCCCEEEEC
T ss_conf ------------0535432-----0112--------1004776530799998722026863
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.77 E-value=2.2e-14 Score=111.35 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=67.7
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEECCCCCCEEE--EEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEE
Q ss_conf 9998789998999968994999980289853000--34204556767999626998069999818992999926797348
Q 001535 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF 488 (1058)
Q Consensus 411 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 488 (1058)
.+.|.+|+.++.. .++.+.+||+.+++....+ ..+..|...|.++.|||||+ +|+.++.. .++|.
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~--~i~~~~~~--~~~~r------- 87 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ--FILLEYNY--VKQWR------- 87 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS--EEEEEEEE--EECSS-------
T ss_pred CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCC--EEEEEECC--CCEEE-------
T ss_conf 7896899979997--59949999889997899970156443167654059989889--79999777--10001-------
Q ss_pred EEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEE
Q ss_conf 84154578569850236995099998407959999668998147762799817999984599989997306799954999
Q 001535 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1058)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~i 568 (1058)
| +.++.+.+||+.++. ...+..+...+..+.|||||+.++... +..+++
T Consensus 88 ----~---------------------s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-----~~~l~~ 136 (470)
T d2bgra1 88 ----H---------------------SYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYV 136 (470)
T ss_dssp ----S---------------------CEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEE
T ss_pred ----E---------------------CCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEE-----CCCCEE
T ss_conf ----0---------------------467349999898885-131246874231010146764135751-----464137
Q ss_pred EECCCCCEEEE
Q ss_conf 93898813556
Q 001535 569 WNESEGTIKRT 579 (1058)
Q Consensus 569 wd~~~~~~~~~ 579 (1058)
|+..+++..+.
T Consensus 137 ~~~~~g~~~~~ 147 (470)
T d2bgra1 137 KIEPNLPSYRI 147 (470)
T ss_dssp ESSTTSCCEEC
T ss_pred EECCCCCEEEE
T ss_conf 98899946532
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=3.8e-14 Score=109.61 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=25.7
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEEECCCCEEEEECCCCEEEEEECC
Q ss_conf 999977985099994299998359999269996--999997999799998437643367325
Q 001535 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (1058)
Q Consensus 854 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~lasg~~dg~i~iwd~~~~~~~~~~~~ 913 (1058)
|.+||..+++.+..+. +...+.+++|+| |++ +++++..|+.|++||..+++.+.++..
T Consensus 296 v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 296 TSSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 9999899994868955-899651799998-99989999948999699998999979999879
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=4.7e-14 Score=109.02 Aligned_cols=54 Identities=6% Similarity=0.057 Sum_probs=22.8
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEECCCCCE--EEEEECCCCEEEEECCCCCEEC
Q ss_conf 999984376433673256788469998189998--9999399959999878884010
Q 001535 897 IHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI--LVSSGADAQLCVWSIDTWEKRK 951 (1058)
Q Consensus 897 i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~--l~s~s~Dg~i~iwd~~~~~~~~ 951 (1058)
|.+||..+++.+..+. +...+.+++|+|||+. +++...|+.|.+||..+++.+.
T Consensus 296 v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~ 351 (368)
T d1mdah_ 296 TSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred EEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEE
T ss_conf 9999899994868955-8996517999989998999994899969999899997999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.63 E-value=6.7e-14 Score=107.95 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=33.4
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCC----------EEEEEE-----CCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 599992699969999979997999984376----------433673-----256788469998189998999939
Q 001535 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----------EVKSKL-----KGHQKRITGLAFSTSLNILVSSGA 935 (1058)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~i~iwd~~~~----------~~~~~~-----~~h~~~V~~l~~s~d~~~l~s~s~ 935 (1058)
...+|++ +|..+.+...|..|..|++... ..+..+ .||...+.+.+++|||++|++++.
T Consensus 315 lh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 315 LHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred CCCEECC-CCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 6522657-8559985244316897235422133226777656864532668987752454223898848996574
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.60 E-value=8.5e-15 Score=114.18 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=28.3
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEE-EECCCCEEEEECCC
Q ss_conf 917999999995998199997899822368506899999762785089989999-98899499998567
Q 001535 593 FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV-TTADNGFKILANAI 660 (1058)
Q Consensus 593 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~dg~i~iw~~~~ 660 (1058)
+.++++++.. +.++.+.++.......+..+.... ....+.++|||+++++ +..++++.+||+..
T Consensus 225 ~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 225 AVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp HHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred EECCCCEEEE-CCCCCEEEECCCCCCEEEEEECCC---CCCCCEECCCCCEEEEECCCCCCEEEEEEEH
T ss_conf 9669999996-999828998036870689971798---8667268999878999077599389998322
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.3e-10 Score=82.25 Aligned_cols=114 Identities=11% Similarity=0.148 Sum_probs=59.8
Q ss_pred EEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC----
Q ss_conf 9605898089997332139999736897013456112114545765322214579856699998789998999968----
Q 001535 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---- 426 (1058)
Q Consensus 351 ~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~---- 426 (1058)
.|.+++. ++.. ..+|.|.+||+.+++...... . ..-....+....||||+++++....
T Consensus 23 ~W~~~~~-~~~~-~~~g~i~~~~~~~~~~~~l~~--------------~--~~~~~~~~~~~~~SpD~~~vl~~~~~~~~ 84 (465)
T d1xfda1 23 KWISDTE-FIYR-EQKGTVRLWNVETNTSTVLIE--------------G--KKIESLRAIRYEISPDREYALFSYNVEPI 84 (465)
T ss_dssp CBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEEEC--------------T--TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred EEECCCC-EEEE-ECCCCEEEEECCCCCEEEEEC--------------C--CCCCCCCCCEEEECCCCCEEEEEECCCCE
T ss_conf 8917984-8999-289969999878998899872--------------7--64444553213898988869999845100
Q ss_pred -----CCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCE
Q ss_conf -----9949999802898530003420455676799962699806999981899299992-67973
Q 001535 427 -----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1058)
Q Consensus 427 -----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~ 486 (1058)
.+.+.++|+.++.... +.........+....|||||+. ++-.. ++.+.+.+ ..+..
T Consensus 85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~ 146 (465)
T d1xfda1 85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQA 146 (465)
T ss_dssp SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCC
T ss_pred EEEECCCCEEEEECCCCCEEE-CCCCCCCCCCCCEEEECCCCCE--EEEEE-CCEEEEEECCCCCE
T ss_conf 476033528999856884564-1576677643110024267856--99996-13299995489965
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.51 E-value=1.8e-09 Score=77.08 Aligned_cols=14 Identities=21% Similarity=0.506 Sum_probs=4.9
Q ss_pred EEEEECCCCEEEEE
Q ss_conf 99981399899999
Q 001535 836 CIALSKNDSYVMSA 849 (1058)
Q Consensus 836 ~i~~s~dg~~la~~ 849 (1058)
+++|+|||++++++
T Consensus 149 ~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 149 GMVFDPTETYLYSA 162 (365)
T ss_dssp EEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
T ss_conf 97888999989982
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.41 E-value=9e-09 Score=72.23 Aligned_cols=29 Identities=17% Similarity=0.034 Sum_probs=14.1
Q ss_pred CCEEEEECCCCEEEEEE-CCCCEEEEECCC
Q ss_conf 76278508998999998-899499998567
Q 001535 632 LPRLRFSKEGNLLAVTT-ADNGFKILANAI 660 (1058)
Q Consensus 632 v~~i~~s~~~~~l~~~~-~dg~i~iw~~~~ 660 (1058)
...++|+|+++++.+.. .++.|.+|+...
T Consensus 195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 089998899866999515899899999559
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=6.2e-09 Score=73.36 Aligned_cols=204 Identities=11% Similarity=0.114 Sum_probs=73.8
Q ss_pred CCCCEEEEEECCCCCEEEEEECCC---EEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 985669999878999899996899---49999802898530003420455676799962699806999981899299992
Q 001535 405 VPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 405 h~~~V~~i~~spdg~~las~~~dg---~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
+...+...+|||||+.||...... .+.+.+..++... .+..+.+......|+|+|+.+ +.....++...++.
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~~ 111 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYV 111 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE----EEEEEECCCCCCEECCCCCEE-EEEEECCCCCCEEE
T ss_conf 8984260388789998999981526751344311367506----776420245430244889864-67640278641000
Q ss_pred --CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEE--EECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf --67973488415457856985023699509999840795999--96689981477627998179999845999899973
Q 001535 482 --LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA--WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1058)
Q Consensus 482 --~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 557 (1058)
....................+.+..+ ..+++...++...+ .+...... ..............++|+++.++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~ 189 (269)
T d2hqsa1 112 MDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVS 189 (269)
T ss_dssp EETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCC-CCEECCCCCCCCEEEEEECCCCCC-EEEECCCCCCCCCCCCCCCCEEEEEE
T ss_conf 0222122000010144211454345544-330000126874386542133100-01000122223432234543057786
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE---CCCCEEEEECCCCCE
Q ss_conf 06799954999938988135565066685202999917999999995---998199997899822
Q 001535 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNI 619 (1058)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~ 619 (1058)
.. .+...+.+.+...+..... . ... ......|+|||+.|+..+ ....|+++++..+..
T Consensus 190 ~~-~~~~~i~~~~~~~~~~~~~-~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 190 SN-GGQQHIAKQDLATGGVQVL-S-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EC-SSCEEEEEEETTTCCEEEC-C-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred EC-CCCEEEEEEECCCCCCEEE-E-CCC-CCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 05-8801256760356440585-0-686-544558989999999998179984799999999977
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.37 E-value=1.4e-08 Score=70.87 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=131.2
Q ss_pred CCEEEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 63389523898389999605898089997332139999736897013456112114545765322214579856699998
Q 001535 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1058)
Q Consensus 335 ~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (1058)
.++...+.-...+..++++|||+ ++++...++.|..|+... +... +......+.+++|
T Consensus 18 ~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g-~~~~--------------------~~~~~~~~~gla~ 75 (302)
T d2p4oa1 18 AKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQI--------------------HATVEGKVSGLAF 75 (302)
T ss_dssp EEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTC-CEEE--------------------EEECSSEEEEEEE
T ss_pred CCEEEECCCCCCCCCEEECCCCC-EEEEECCCCEEEEEECCC-CEEE--------------------EECCCCCCCEEEE
T ss_conf 20788888998847877999988-999968899899990899-8899--------------------9717998536898
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECC
Q ss_conf 7899989999689949999802898530003420455676799962699806999981899299992-679734884154
Q 001535 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1058)
Q Consensus 415 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h 493 (1058)
++||+++++...++.+..|+............-.........+.+.+++. ++++.+.++.+..++ ..+.........
T Consensus 76 ~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~~ 153 (302)
T d2p4oa1 76 TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEHP 153 (302)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred CCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCC--EEEECCCCCCCEEEECCCCCCEEEECCC
T ss_conf 67788699832895378887101111012102357863221667715797--8750356554102421687303675188
Q ss_pred CCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCC
Q ss_conf 57856985023699509999840795999966899814776279981799998459998999730679995499993898
Q 001535 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1058)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1058)
..... . ..........+.+. +..++.+.. ..+.|+.++...
T Consensus 154 ~~~~~--~--------------------------------~~~~~~~~ngi~~~--~~~l~~~~~---~~~~i~~~~~~~ 194 (302)
T d2p4oa1 154 MLARS--N--------------------------------SESVFPAANGLKRF--GNFLYVSNT---EKMLLLRIPVDS 194 (302)
T ss_dssp GGSCS--S--------------------------------TTCCSCSEEEEEEE--TTEEEEEET---TTTEEEEEEBCT
T ss_pred CCCEE--E--------------------------------CCCCCCCCCCCCCC--CCCEEEECC---CCCEEEECCCCC
T ss_conf 64014--3--------------------------------15763224320116--983044037---887698634433
Q ss_pred CCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE---ECCCCEEEEEEC
Q ss_conf 813556506-6685202999917999999995998199997899822368506899999762785---089989999988
Q 001535 574 GTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF---SKEGNLLAVTTA 649 (1058)
Q Consensus 574 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~---s~~~~~l~~~~~ 649 (1058)
......... ........+++.++++..++...++.|..++.. ++..............++++| ++|++.|.+++.
T Consensus 195 ~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 195 TDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp TSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEECC
T ss_conf 3323453101589987523787999999997489918998789-978999963789888248997087887898999988
Q ss_pred C
Q ss_conf 9
Q 001535 650 D 650 (1058)
Q Consensus 650 d 650 (1058)
.
T Consensus 274 ~ 274 (302)
T d2p4oa1 274 G 274 (302)
T ss_dssp T
T ss_pred C
T ss_conf 9
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=6.1e-08 Score=66.45 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=25.3
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 6999987899989999689949999802898530003420455676799962699806999981899299992
Q 001535 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1058)
Q Consensus 409 V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd 481 (1058)
...++++++|.++++....+.+++++-.+..... .. .......++++.+++. ++++-.....+..++
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~ 125 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLA 125 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEEC
T ss_pred CEEEEECCCCCEEEEEEEECEEEEEEECCCEEEE---EE-EEEEECCCCCCCCCCE--EEEECCCCCCCCCCC
T ss_conf 4089993899889863100003554211200000---01-0000000002455320--575033555321123
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.6e-07 Score=63.58 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=11.8
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEECCC
Q ss_conf 699998789998999968994999980289
Q 001535 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1058)
Q Consensus 409 V~~i~~spdg~~las~~~dg~i~iwd~~~~ 438 (1058)
+....|||||+.+|... ++.+.+.+..++
T Consensus 116 l~~~~wSPDG~~iafv~-~~nl~~~~~~~~ 144 (465)
T d1xfda1 116 LQYAGWGPKGQQLIFIF-ENNIYYCAHVGK 144 (465)
T ss_dssp CSBCCBCSSTTCEEEEE-TTEEEEESSSSS
T ss_pred CCEEEECCCCCEEEEEE-CCEEEEEECCCC
T ss_conf 11002426785699996-132999954899
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.17 E-value=1.9e-07 Score=63.09 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=35.0
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEE-EEEECCCCEEEEEC
Q ss_conf 029999179999999959981999978998223685068999997627850899899-99988994999985
Q 001535 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILAN 658 (1058)
Q Consensus 588 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iw~~ 658 (1058)
...+++..+|+..++....+.|.+|+...+.....+..+.. ...+++|.++++.| ++.+.++.|...++
T Consensus 228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCC--CEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf 10257834785799982799999996999979999979999--87899992898999999878991999978
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.16 E-value=1.5e-07 Score=63.71 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=9.3
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 69999878999899996899499998
Q 001535 409 VSRVAWSPDGNYVGVAFTKHLIQLYS 434 (1058)
Q Consensus 409 V~~i~~spdg~~las~~~dg~i~iwd 434 (1058)
+..++++|||+++++...+++|..|+
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~ 55 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSIT 55 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCEEECCCCCEEEEECCCCEEEEEE
T ss_conf 47877999988999968899899990
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.13 E-value=2.3e-07 Score=62.43 Aligned_cols=13 Identities=38% Similarity=0.294 Sum_probs=5.4
Q ss_pred EEEEEECCCCCEE
Q ss_conf 6999987899989
Q 001535 409 VSRVAWSPDGNYV 421 (1058)
Q Consensus 409 V~~i~~spdg~~l 421 (1058)
...++++++|...
T Consensus 16 P~~vavd~dG~i~ 28 (260)
T d1rwia_ 16 PSGVAVDSAGNVY 28 (260)
T ss_dssp EEEEEECTTCCEE
T ss_pred CCEEEECCCCCEE
T ss_conf 7889996999999
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.13 E-value=2.8e-07 Score=61.87 Aligned_cols=29 Identities=7% Similarity=-0.081 Sum_probs=11.6
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 979999901898999996899399996899
Q 001535 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1058)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~ 1038 (1058)
....+++.+||.++ ++..++.|++|+..+
T Consensus 245 ~p~~vav~~dG~l~-V~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 245 QCFDVALMDDGSVV-LASKDYRLYIYRYVQ 273 (279)
T ss_dssp CEEEEEEETTTEEE-EEETTTEEEEEECSC
T ss_pred CEEEEEEECCCCEE-EEECCCEEEEEEEEE
T ss_conf 88379990899199-991899699987220
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.04 E-value=6.7e-07 Score=59.22 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=27.4
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCCEEEEEC
Q ss_conf 5999926999699999799979999843764336732567884699981899989-99939995999987
Q 001535 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNIL-VSSGADAQLCVWSI 944 (1058)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~s~s~Dg~i~iwd~ 944 (1058)
..+++.. +|++.++....+.|.+|+...++.+..+..+....++++|.+|++.| ++.+.++.|...++
T Consensus 229 dGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 229 DGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEEEC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf 0257834-78579998279999999699997999997999987899992898999999878991999978
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.00 E-value=9.4e-07 Score=58.20 Aligned_cols=157 Identities=13% Similarity=0.184 Sum_probs=61.5
Q ss_pred CEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CEEEEE
Q ss_conf 3899996058980899973321399997368970134561121145457653222145798566999987899-989999
Q 001535 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG-NYVGVA 424 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg-~~las~ 424 (1058)
....++++|+|+ ++++-...+.|++||.+ |+.+....- . ..-.+.......+++.++. .++++.
T Consensus 24 ~P~gvavd~dg~-i~VaD~~n~rI~v~d~~-G~~~~~~~~-------~------~~~~~~~~~p~~~~~~~~~~~~~~~~ 88 (279)
T d1q7fa_ 24 EPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------C------GKRDSQLLYPNRVAVVRNSGDIIVTE 88 (279)
T ss_dssp CEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------B------SSSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred CCCEEEECCCCC-EEEEECCCCEEEEEECC-CCEEEEECC-------C------CCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 900799949998-99997998989999699-999998166-------5------78866422663000123445520000
Q ss_pred -ECCCEEEEEEECCCCCCEEEEEE-CCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEEC--CCCCEEEE
Q ss_conf -68994999980289853000342-045567679996269980699998189929999267973488415--45785698
Q 001535 425 -FTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG--HEAPVYSI 500 (1058)
Q Consensus 425 -~~dg~i~iwd~~~~~~~~~~~~l-~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--h~~~v~~i 500 (1058)
+.++.|..++... .... .+ .........+++.+++. ++++....+.+.+++.+++.+..+.. +......+
T Consensus 89 ~~~~~~i~~~~~~g-~~~~---~~~~~~~~~p~~~avd~~G~--i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i 162 (279)
T d1q7fa_ 89 RSPTHQIQIYNQYG-QFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGV 162 (279)
T ss_dssp CGGGCEEEEECTTS-CEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEE
T ss_pred CCCCCCCCCCCCCC-CCEE---ECCCCCCCCCCEECCCCCCC--EEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCEE
T ss_conf 47753100000256-3024---03888642542000014784--799963263256762687501002200102566243
Q ss_pred EECCCCCCEEEEEEEECCEEEEEEC
Q ss_conf 5023699509999840795999966
Q 001535 501 CPHHKENIQFIFSTAIDGKIKAWLY 525 (1058)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~ 525 (1058)
++. +++..+++....+.|.+|+.
T Consensus 163 ~~d--~~g~i~v~d~~~~~V~~~d~ 185 (279)
T d1q7fa_ 163 VVN--DKQEIFISDNRAHCVKVFNY 185 (279)
T ss_dssp EEC--SSSEEEEEEGGGTEEEEEET
T ss_pred EEC--CCEEEEEEECCCCCEEEEEC
T ss_conf 201--20017862013551002304
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.87 E-value=2.6e-06 Score=55.06 Aligned_cols=236 Identities=13% Similarity=0.070 Sum_probs=124.1
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 89838999960589808999733213999973689701345611211454576532221457985669999878999899
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 422 (1058)
....+..++|.++|+ ++++-...+.|.-|+..+++.... ..........+++++||++++
T Consensus 38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~v 97 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFV 97 (319)
T ss_dssp SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEE
T ss_pred CCCCCEECEECCCCC-EEEEECCCCEEEEEECCCCEEEEE-------------------EECCCCCEEEEEECCCCCEEE
T ss_conf 886747078999999-999977999999998999959999-------------------948998703899999999999
Q ss_pred EEECC----CEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECC------CCEEEEECCCCEEEEEEC
Q ss_conf 99689----94999980289853000342045567679996269980699998189------929999267973488415
Q 001535 423 VAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWELSGRKLFNFEG 492 (1058)
Q Consensus 423 s~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~ 492 (1058)
+...+ +.+...+..+....... .-..-......+++.++|. +.++.... +.+..++..+..+..+..
T Consensus 98 a~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~ 174 (319)
T d2dg1a1 98 CYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ 174 (319)
T ss_dssp EECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred EECCCCCCCEEEEEECCCCCEEEEEC-CCCCCCCCCCCEEEEECCC--EEECCCCCCCCCCCCEEEEEECCCCEEEEEEE
T ss_conf 95689731104998738996364442-6777555875226773065--32001354002574215788416633578861
Q ss_pred CCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECC
Q ss_conf 45785698502369950999984079599996689981477627998179999845999899973067999549999389
Q 001535 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1058)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1058)
.-. ..+.++|+++++.++.+.. ..+.|+.|++.
T Consensus 175 ~~~--------------------------------------------~pnGia~s~dg~~lyvad~---~~~~I~~~d~~ 207 (319)
T d2dg1a1 175 NIS--------------------------------------------VANGIALSTDEKVLWVTET---TANRLHRIALE 207 (319)
T ss_dssp EES--------------------------------------------SEEEEEECTTSSEEEEEEG---GGTEEEEEEEC
T ss_pred CCC--------------------------------------------EEEEEEECCCCCEEEEECC---CCCCEEEEEEC
T ss_conf 233--------------------------------------------0100010122212787404---68914799976
Q ss_pred CC-CEEEE------EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC----CCCCCCEEEEECCC
Q ss_conf 88-13556------506668520299991799999999599819999789982236850689----99997627850899
Q 001535 573 EG-TIKRT------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----GLPNLPRLRFSKEG 641 (1058)
Q Consensus 573 ~~-~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~s~~~ 641 (1058)
.. ..... ...........+++..+|+..++....+.|.+++. .++.+..+..+. +...+.+++|.+++
T Consensus 208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~ 286 (319)
T d2dg1a1 208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT 286 (319)
T ss_dssp TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCC
T ss_conf 9983620246333312577641036417389999999848998999979-995988996887577867504667780799
Q ss_pred CEEEEEEC
Q ss_conf 89999988
Q 001535 642 NLLAVTTA 649 (1058)
Q Consensus 642 ~~l~~~~~ 649 (1058)
..+++...
T Consensus 287 ~~~~~t~~ 294 (319)
T d2dg1a1 287 NQLIICSN 294 (319)
T ss_dssp CEEEEEEE
T ss_pred CEEEEECC
T ss_conf 88999857
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.83 E-value=3.4e-06 Score=54.27 Aligned_cols=92 Identities=11% Similarity=0.125 Sum_probs=47.2
Q ss_pred EECC--CCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-C-
Q ss_conf 6058--98089997332139999736897013456112114545765322214579856699998789998999968-9-
Q 001535 352 FHPS--HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-K- 427 (1058)
Q Consensus 352 ~sp~--g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~-d- 427 (1058)
.||| |++++.+ .++.|.+.|+.+++... +..+.+.+...+|||||+.||.... +
T Consensus 6 ~sPdi~G~~v~f~--~~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~~ 63 (281)
T d1k32a2 6 LNPDIHGDRIIFV--CCDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRGS 63 (281)
T ss_dssp EEEEEETTEEEEE--ETTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEEST
T ss_pred CCCCCCCCEEEEE--ECCCEEEEECCCCCEEE--------------------EECCCCCCCCEEECCCCCEEEEEEEECC
T ss_conf 5888799999999--09968999899998799--------------------7669985267798789998999986289
Q ss_pred ----CEEEEEEECCCCCCEEEE---EECCCCCCEEEEEEECCCCE
Q ss_conf ----949999802898530003---42045567679996269980
Q 001535 428 ----HLIQLYSYAGSNDLRQHS---QIDAHVGAVNDLAFAYPNKL 465 (1058)
Q Consensus 428 ----g~i~iwd~~~~~~~~~~~---~l~~h~~~v~~i~~s~d~~~ 465 (1058)
..|.+++..+++..+... .............|+|+|+.
T Consensus 64 ~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~ 108 (281)
T d1k32a2 64 SLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL 108 (281)
T ss_dssp TCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred CCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 877228999982599528864168875476444343102798877
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.62 E-value=1.5e-05 Score=49.81 Aligned_cols=12 Identities=8% Similarity=0.049 Sum_probs=4.4
Q ss_pred EEEECCCCCEEE
Q ss_conf 999917999999
Q 001535 590 VVQFDTTQNHFL 601 (1058)
Q Consensus 590 ~~~~~~~~~~l~ 601 (1058)
...|+|||+.|+
T Consensus 45 ~p~~SPDG~~ia 56 (281)
T d1k32a2 45 NARFFPDGRKIA 56 (281)
T ss_dssp EEEECTTSSEEE
T ss_pred CEEECCCCCEEE
T ss_conf 779878999899
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.16 E-value=0.00017 Score=42.49 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=20.0
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEE
Q ss_conf 29999179999999959981999978998223685068999997627850
Q 001535 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1058)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 638 (1058)
..+++..+|+..++.-..+.|..|+. +++.+..+..+.. .+++++|-
T Consensus 202 dG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~--~~T~~~FG 248 (295)
T d2ghsa1 202 DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK--QTTCPAFI 248 (295)
T ss_dssp EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS--BEEEEEEE
T ss_pred CCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCCCC--CEEEEEEE
T ss_conf 32678699998953207884688569-9928668638998--52798982
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.84 E-value=0.00064 Score=38.48 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=49.3
Q ss_pred EEEEEEECCCCEEEEEE--CCCEEEEECCCCE------------EEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 41999813998999993--9919999779850------------999942999983599992699969999979997999
Q 001535 834 VPCIALSKNDSYVMSAT--GGKISLFNMMTFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899 (1058)
Q Consensus 834 v~~i~~s~dg~~la~~~--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~i 899 (1058)
...+.++|||+++++++ +.++.|+|++... ...... ..-....-+|+. .|....+-.-|..|.-
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~-~g~aytslfids~v~k 354 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVK 354 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEE
T ss_pred CCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC-CCCCCCCCCCCC-CCEEEEEEECCCEEEE
T ss_conf 77338899997899938858957999822535665046884521796113-576766203389-8429998612316999
Q ss_pred EECCCC----------EEEEEECCCCCCEEEE------EECCCCCEEEEEE
Q ss_conf 984376----------4336732567884699------9818999899993
Q 001535 900 YNVRVD----------EVKSKLKGHQKRITGL------AFSTSLNILVSSG 934 (1058)
Q Consensus 900 wd~~~~----------~~~~~~~~h~~~V~~l------~~s~d~~~l~s~s 934 (1058)
|++... ..+..+.-|-.+ -.+ ...|||++|++..
T Consensus 355 w~~~~~~~~~~~~~~~~v~~k~~v~y~~-gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 355 WNIEDAIRAYAGEKVDPIKDKLDVHYQP-GHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCE-EEEEETTTTSTTCCSSEEEEEE
T ss_pred EECCHHHHHHCCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCCCEEEEEC
T ss_conf 7344055664466677311354334578-8774576786788887899803
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.76 E-value=0.00084 Score=37.67 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=42.3
Q ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCE-EEEEECCCCC-E
Q ss_conf 9199997798509999429999835999926999699999799979999843764336732567884-6999818999-8
Q 001535 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI-TGLAFSTSLN-I 929 (1058)
Q Consensus 852 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V-~~l~~s~d~~-~ 929 (1058)
|.+.-||+.+++.+........ ...-..+- .+.++++|+.||.++.+|..+|+.+.++....+.. .-+.|..||+ |
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCEEEECCCCCCEEEEECCCCC-CCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 6178757877866705168898-87760798-699899977999199999998868579989899451677999899999
Q ss_pred EEEE
Q ss_conf 9999
Q 001535 930 LVSS 933 (1058)
Q Consensus 930 l~s~ 933 (1058)
++..
T Consensus 535 v~v~ 538 (573)
T d1kb0a2 535 VSVA 538 (573)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.74 E-value=0.00092 Score=37.37 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=42.9
Q ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCEEEEECCC
Q ss_conf 97999984376433673256788469998189998999939995999987888401028983279989999408998579
Q 001535 895 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1058)
Q Consensus 895 g~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~i~fs~d 974 (1058)
|.+.-||+.+++.+.+.+.. .+...=..+-.+.+++.++.|+.++.+|.++|+.+-.+... .+.... -+.|..|
T Consensus 457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~--~~~~~~---P~ty~~~ 530 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG--TGVVAA---PSTYMVD 530 (573)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--SCCCSC---CEEEEET
T ss_pred CCEEEECCCCCCEEEEECCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECC--CCCCCC---CEEEEEC
T ss_conf 61787578778667051688-98877607986998999779991999999988685799898--994516---7799989
Q ss_pred CCEEE
Q ss_conf 98999
Q 001535 975 QVRML 979 (1058)
Q Consensus 975 ~~~l~ 979 (1058)
|+..+
T Consensus 531 GkQYv 535 (573)
T d1kb0a2 531 GRQYV 535 (573)
T ss_dssp TEEEE
T ss_pred CEEEE
T ss_conf 99999
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.55 E-value=0.0017 Score=35.61 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=13.9
Q ss_pred EEEECCCCCEEEEEECC-CEEEEEEECCC
Q ss_conf 99987899989999689-94999980289
Q 001535 411 RVAWSPDGNYVGVAFTK-HLIQLYSYAGS 438 (1058)
Q Consensus 411 ~i~~spdg~~las~~~d-g~i~iwd~~~~ 438 (1058)
..++.+||++++.|+.+ ..+.+||..+.
T Consensus 80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~ 108 (387)
T d1k3ia3 80 GISMDGNGQIVVTGGNDAKKTSLYDSSSD 108 (387)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred EEEEECCCCEEEEECCCCCCEEEECCCCC
T ss_conf 89994688689863688862167567557
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.31 E-value=0.0032 Score=33.60 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=15.6
Q ss_pred EEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEE
Q ss_conf 999789982236850689999976278508998999998
Q 001535 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1058)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 648 (1058)
.++|..+.+....+...+ ....+.++++|+++++.+
T Consensus 176 t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 176 TAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp EEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEE
T ss_pred EEEECCCCEEEEEEEECC---CHHCCCCCCCCCEEEEEE
T ss_conf 999667766989964089---720153189999899971
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.12 E-value=0.005 Score=32.27 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=45.0
Q ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCC-EEEEEECCCCC-E
Q ss_conf 919999779850999942999983599992699969999979997999984376433673256788-46999818999-8
Q 001535 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLN-I 929 (1058)
Q Consensus 852 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~~-~ 929 (1058)
|.+.-+|+.+++.+....... ....-..+- .+.+++.|+.||.++.+|..+|+.+.++....+. -.-+.+..||+ |
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCEEEEECCCCEEEEECCCCC-CCCCCEEEE-CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 646887077883731025788-887740598-799899977898199999999858279989999551677999899999
Q ss_pred EEEEEC
Q ss_conf 999939
Q 001535 930 LVSSGA 935 (1058)
Q Consensus 930 l~s~s~ 935 (1058)
++..+.
T Consensus 516 v~v~aG 521 (560)
T d1kv9a2 516 VAIMAG 521 (560)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999917
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.11 E-value=0.005 Score=32.24 Aligned_cols=95 Identities=14% Similarity=0.047 Sum_probs=36.8
Q ss_pred CCCEEEEEECCCCCEEEEE-ECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCC
Q ss_conf 8566999987899989999-689949999802898530003420455676799962699806999981899299992679
Q 001535 406 PISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1058)
Q Consensus 406 ~~~V~~i~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~ 484 (1058)
...+..++|.+..+.|... ..++.|...++.++.... .+......+..+++..-+.. +.++-...+.|.+.+.++
T Consensus 35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEE---EEEECCCCCCEEEEECCCCE-EEEECCCCCEEEEEECCC
T ss_conf 77579999985899999998999919999766587289---88701264207999636886-888426789799880588
Q ss_pred CEEEEEEC-CCCCEEEEEECC
Q ss_conf 73488415-457856985023
Q 001535 485 RKLFNFEG-HEAPVYSICPHH 504 (1058)
Q Consensus 485 ~~~~~~~~-h~~~v~~i~~~~ 504 (1058)
.....+.. .......+++.|
T Consensus 111 ~~~~~l~~~~l~~p~~l~vdp 131 (263)
T d1npea_ 111 TQRRVLFDTGLVNPRGIVTDP 131 (263)
T ss_dssp CSCEEEECSSCSSEEEEEEET
T ss_pred CEEEEEECCCCCCCCEEEEEC
T ss_conf 167777125666872799925
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.02 E-value=0.0061 Score=31.67 Aligned_cols=81 Identities=15% Similarity=0.004 Sum_probs=43.0
Q ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC-CEEEEEECCCCC-E
Q ss_conf 91999977985099994299998359999269996999997999799998437643367325678-846999818999-8
Q 001535 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK-RITGLAFSTSLN-I 929 (1058)
Q Consensus 852 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~l~~s~d~~-~ 929 (1058)
|.+.-+|+.+++.+.+........... .+- .+.++++|+.||.++.+|.++|+.+.++.-... .-.-+.|..||+ |
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY 521 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGT-LYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY 521 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBC-EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCEEEECCCCCCEEEECCCCCCCCCCE-EEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEE
T ss_conf 617885367784642767899987560-596-699799977899699999999868789989999651564898899999
Q ss_pred EEEEE
Q ss_conf 99993
Q 001535 930 LVSSG 934 (1058)
Q Consensus 930 l~s~s 934 (1058)
+++..
T Consensus 522 i~v~~ 526 (571)
T d2ad6a1 522 IGSMY 526 (571)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99990
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.86 E-value=0.0083 Score=30.75 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=41.7
Q ss_pred CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCEEEEECC
Q ss_conf 99799998437643367325678846999818999899993999599998788840102898327998999940899857
Q 001535 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1058)
Q Consensus 894 dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~i~fs~ 973 (1058)
.|.+.-+|+.+++.+.+...- .+..+-..+-.+.+++.++.|+.++.+|.++|+.+-...+.. +.. ..-+.|..
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~--~~~---a~P~ty~~ 516 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS--GGI---GSPMTYSF 516 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS--CCC---SCCEEEEE
T ss_pred CCCEEEECCCCCCEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCC--CCE---ECCEEEEE
T ss_conf 561788536778464276789-998756059669979997789969999999986878998999--965---15648988
Q ss_pred CCCEEE
Q ss_conf 998999
Q 001535 974 DQVRML 979 (1058)
Q Consensus 974 d~~~l~ 979 (1058)
||+..+
T Consensus 517 dGkqYi 522 (571)
T d2ad6a1 517 KGKQYI 522 (571)
T ss_dssp TTEEEE
T ss_pred CCEEEE
T ss_conf 999999
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.82 E-value=0.0088 Score=30.57 Aligned_cols=122 Identities=12% Similarity=0.087 Sum_probs=53.5
Q ss_pred CCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 89808999733213999973689701345611211454576532221457985669999878999899996899499998
Q 001535 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434 (1058)
Q Consensus 355 ~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd 434 (1058)
+|. +..++.++.|.-.|..+|+.+-++.....+ ..............+ +. .+..++.+..++.+.-.|
T Consensus 66 ~g~--vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~-----~~~~~~~~~~~~~~~---~~--~~~~v~~~~~~g~l~Ald 133 (560)
T d1kv9a2 66 DGV--IYTSMSWSRVIAVDAASGKELWRYDPEVAK-----VKARTSCCDAVNRGV---AL--WGDKVYVGTLDGRLIALD 133 (560)
T ss_dssp TTE--EEEEEGGGEEEEEETTTCCEEEEECCCCCG-----GGGGGCTTCSCCCCC---EE--EBTEEEEECTTSEEEEEE
T ss_pred CCE--EEEECCCCEEEEEECCCCCEEEEECCCCCC-----CCCCCCCCCCCCCCC---CE--ECCEEEEEECCCEEEEEE
T ss_conf 999--999789995999968999879887798776-----445443224653575---04--688499973898799997
Q ss_pred ECCCCCCEEEEEECCCCC-CEEEEEEECCCCEEEEEEEEC------CCCEEEEE-CCCCEEEEEE
Q ss_conf 028985300034204556-767999626998069999818------99299992-6797348841
Q 001535 435 YAGSNDLRQHSQIDAHVG-AVNDLAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFNFE 491 (1058)
Q Consensus 435 ~~~~~~~~~~~~l~~h~~-~v~~i~~s~d~~~~~l~s~~~------d~~i~iwd-~~~~~~~~~~ 491 (1058)
..+++.+-.......+.. .++..-.-.++. ++.+.. .|.|.-+| .+|+.+-++.
T Consensus 134 a~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 134 AKTGKAIWSQQTTDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp TTTCCEEEEEECSCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEECCCCCCCCCCEEEEEEEEEECCC---CCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 7789577305766755404543200450685---1036531100135538999778862776641
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.64 E-value=0.012 Score=29.67 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=19.2
Q ss_pred EEEEEEECCCCEEEEEE-CCCEEEEECCCCEEEEEECCCCCCEEE
Q ss_conf 41999813998999993-991999977985099994299998359
Q 001535 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF 877 (1058)
Q Consensus 834 v~~i~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 877 (1058)
..++.+|+.-..+..-+ .|.+++||++++.++..-.-....|..
T Consensus 258 Pvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~ 302 (327)
T d1utca2 258 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 302 (327)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 779996433799999966758999975666289994047884489
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.59 E-value=0.013 Score=29.45 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=40.4
Q ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC-CEEEEEECCCCC-E
Q ss_conf 91999977985099994299998359999269996999997999799998437643367325678-846999818999-8
Q 001535 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK-RITGLAFSTSLN-I 929 (1058)
Q Consensus 852 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~l~~s~d~~-~ 929 (1058)
|.+.-||..+++.+....... ....-..+. .+.+++.|+.||.++.+|..+|+.+.++....+ .-.-+.|..||+ |
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY 530 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CEEEEEECCCCCEECCCCCCC-CCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 538998078885623327888-874414686-699799978999599999999848369989999540776899899999
Q ss_pred EEEE
Q ss_conf 9999
Q 001535 930 LVSS 933 (1058)
Q Consensus 930 l~s~ 933 (1058)
++..
T Consensus 531 vav~ 534 (596)
T d1w6sa_ 531 VAIY 534 (596)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.013 Score=29.30 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=6.3
Q ss_pred CEEEEEECCCCCEEE
Q ss_conf 669999878999899
Q 001535 408 SVSRVAWSPDGNYVG 422 (1058)
Q Consensus 408 ~V~~i~~spdg~~la 422 (1058)
.+..+.|.+..+.|.
T Consensus 31 ~~~~id~d~~~~~lY 45 (266)
T d1ijqa1 31 NVVALDTEVASNRIY 45 (266)
T ss_dssp SEEEEEEETTTTEEE
T ss_pred CEEEEEEEECCCEEE
T ss_conf 559999980899999
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.52 E-value=0.014 Score=29.15 Aligned_cols=99 Identities=10% Similarity=0.073 Sum_probs=45.4
Q ss_pred CEEEEEEECCCCEEEEEEECCC----EEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 3899996058980899973321----399997368970134561121145457653222145798566999987899989
Q 001535 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1058)
Q Consensus 346 ~V~~v~~sp~g~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~l 421 (1058)
.+..+.+||||++++.+-+..| .+++.|+.+++.+.. . +. ......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~-----------------i~--~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------LE--RVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------EE--EECSCCEEECTTSSEE
T ss_pred EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCC-C-----------------CC--CCCCCCEEECCCCCEE
T ss_conf 33425853789879999556667210467741676403144-2-----------------22--4323641785799899
Q ss_pred EEEECC----------------CEEEEEEECCCCCCEEEEEECCC--CCCEEEEEEECCCCE
Q ss_conf 999689----------------94999980289853000342045--567679996269980
Q 001535 422 GVAFTK----------------HLIQLYSYAGSNDLRQHSQIDAH--VGAVNDLAFAYPNKL 465 (1058)
Q Consensus 422 as~~~d----------------g~i~iwd~~~~~~~~~~~~l~~h--~~~v~~i~~s~d~~~ 465 (1058)
+....+ ..|..|.+.+...-.. ..+... ...+..+..+.+++.
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~-~v~~e~d~~~~~~~~~~s~d~~~ 246 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI-LCAEFPDEPKWMGGAELSDDGRY 246 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-EEECCTTCTTCEEEEEECTTSCE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-CCCCCCCCCCEEEEEECCCCCCE
T ss_conf 99976266676544333457863389998898865310-02232357725775302687624
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.46 E-value=0.015 Score=28.92 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCCEEEEEECCCCCEEEEE-ECC----CEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCE
Q ss_conf 98566999987899989999-689----94999980289853000342045567679996269980
Q 001535 405 VPISVSRVAWSPDGNYVGVA-FTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1058)
Q Consensus 405 h~~~V~~i~~spdg~~las~-~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~ 465 (1058)
+.-.+...++|||++++|.+ +.+ ..+++.|+.+++.+.. .+. ......+.|.+|++.
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~ 184 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG 184 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCC--CCC--CCCCCCEEECCCCCE
T ss_conf 44133425853789879999556667210467741676403144--222--432364178579989
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.43 E-value=0.016 Score=28.80 Aligned_cols=24 Identities=25% Similarity=0.435 Sum_probs=9.2
Q ss_pred EEEEECCCCEEEEEEEECC-CCEEEEE
Q ss_conf 9996269980699998189-9299992
Q 001535 456 DLAFAYPNKLLCVVTCGDD-KLIKVWE 481 (1058)
Q Consensus 456 ~i~~s~d~~~~~l~s~~~d-~~i~iwd 481 (1058)
..++.+++. +++.|+.+ ..+.+||
T Consensus 80 ~~~~~~~g~--i~v~Gg~~~~~~~~yd 104 (387)
T d1k3ia3 80 GISMDGNGQ--IVVTGGNDAKKTSLYD 104 (387)
T ss_dssp EEEECTTSC--EEEECSSSTTCEEEEE
T ss_pred EEEEECCCC--EEEEECCCCCCEEEEC
T ss_conf 899946886--8986368886216756
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.49 E-value=0.04 Score=25.97 Aligned_cols=72 Identities=8% Similarity=0.147 Sum_probs=34.8
Q ss_pred CCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCC-CEEEEEEECCCCEEEEEEEEC------CCCEEEEE-CCCCEEEE
Q ss_conf 99899996899499998028985300034204556-767999626998069999818------99299992-67973488
Q 001535 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG-AVNDLAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFN 489 (1058)
Q Consensus 418 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~-~v~~i~~s~d~~~~~l~s~~~------d~~i~iwd-~~~~~~~~ 489 (1058)
+.+++.++.|+.+.-.|.++++.+-....-..+.. .++.--.--++. ++.+.. .|.|+-+| .+|+.+.+
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~---vivg~~~~e~~~~G~v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CEEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEECCE---EEEEECCCCCCCCCCEEEEECCCCCEEEE
T ss_conf 629999807987685436568410231014655564224588177775---89930234443357328988788857788
Q ss_pred EEC
Q ss_conf 415
Q 001535 490 FEG 492 (1058)
Q Consensus 490 ~~~ 492 (1058)
+..
T Consensus 198 ~~t 200 (596)
T d1w6sa_ 198 AYA 200 (596)
T ss_dssp EES
T ss_pred EEC
T ss_conf 653
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.051 Score=25.26 Aligned_cols=40 Identities=5% Similarity=0.069 Sum_probs=15.1
Q ss_pred EECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 4079599996689981477627998179999845999899
Q 001535 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1058)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 554 (1058)
...+.|.+.+++.................+++.|...++.
T Consensus 96 ~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly 135 (266)
T d1ijqa1 96 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 135 (266)
T ss_dssp TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEE
T ss_conf 4899998576489537888727998833699980039488
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.07 E-value=0.054 Score=25.08 Aligned_cols=24 Identities=8% Similarity=0.283 Sum_probs=9.0
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCC
Q ss_conf 7899989999689949999802898
Q 001535 415 SPDGNYVGVAFTKHLIQLYSYAGSN 439 (1058)
Q Consensus 415 spdg~~las~~~dg~i~iwd~~~~~ 439 (1058)
+|..+.||.-+ ..++.++|+++.+
T Consensus 71 hP~~~IiALra-g~~LQiFnletK~ 94 (327)
T d1utca2 71 NPASKVIALKA-GKTLQIFNIEMKS 94 (327)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred CCCCCEEEEEC-CCEEEEEEHHHHH
T ss_conf 88875799962-8868998446822
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.86 E-value=0.03 Score=26.82 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC--HHHHHHHHHCCCHHHHHHHH
Q ss_conf 599999999986445979999999985098867--88899885444889999987
Q 001535 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYL 57 (1058)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l 57 (1058)
++|+.+-|++||..+||.+++.+|.+|..+.++ ...-..-.++-+|..++.+-
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQ 61 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQ 61 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999999888299999999987789870466640372125899899999
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.12 Score=22.74 Aligned_cols=79 Identities=13% Similarity=0.265 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC-------CHHHHHHH
Q ss_conf 46889888587686604998899999985322323469788999988642336453001113699-------56799999
Q 001535 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (1058)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1058)
.++|.++-+.|++|+..+...+|..++.+.-.-+...+.+++.+|..+....++.+++....+.+ ...+-..|
T Consensus 44 ~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lL 123 (149)
T d2nxpa1 44 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL 123 (149)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHH
T ss_conf 88999999999999978987899999998222435889999999873799888732489999737985899649999999
Q ss_pred HHHHHH
Q ss_conf 999973
Q 001535 144 LIELKK 149 (1058)
Q Consensus 144 ~~~l~~ 149 (1058)
+..|++
T Consensus 124 l~~L~~ 129 (149)
T d2nxpa1 124 KRHLQE 129 (149)
T ss_dssp HHHHTT
T ss_pred HHHHHH
T ss_conf 999986
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.60 E-value=0.15 Score=21.97 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=41.2
Q ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCC-EEEEEECCCCC-E
Q ss_conf 919999779850999942999983599992699969999979997999984376433673256788-46999818999-8
Q 001535 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLN-I 929 (1058)
Q Consensus 852 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~~-~ 929 (1058)
|.+.-+|+.+++.+.....+... ..-..+. .+.++++|+.||.++.+|..+|+.+.+++..... -.-+.|..||+ |
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~-~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPL-WAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC-CSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CEEEEECCCCCCEEEECCCCCCC-CCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 75999807899587326779997-4501697-698699967999699999999868679889999621677999899999
Q ss_pred EEE
Q ss_conf 999
Q 001535 930 LVS 932 (1058)
Q Consensus 930 l~s 932 (1058)
++.
T Consensus 544 v~i 546 (582)
T d1flga_ 544 LGV 546 (582)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=89.62 E-value=0.22 Score=20.83 Aligned_cols=78 Identities=12% Similarity=0.216 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC-------CHHHHHHH
Q ss_conf 46889888587686604998899999985322323469788999988642336453001113699-------56799999
Q 001535 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (1058)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1058)
.++|.++-+.|+||+..+..++|..++++.-..+ ....+++.+|..+....++..++....+.+ ...+-..|
T Consensus 26 ~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~-~~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s~~lL 104 (131)
T d2j4ba1 26 PLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YNKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLL 104 (131)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHH
T ss_conf 8899999999999997887889999999813028-889999999874699988822299999865965889679999999
Q ss_pred HHHHHH
Q ss_conf 999973
Q 001535 144 LIELKK 149 (1058)
Q Consensus 144 ~~~l~~ 149 (1058)
+.-|++
T Consensus 105 ~~fL~~ 110 (131)
T d2j4ba1 105 INFLEE 110 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999985
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.39 E-value=0.3 Score=19.90 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=42.8
Q ss_pred CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCEEEEECC
Q ss_conf 99799998437643367325678846999818999899993999599998788840102898327998999940899857
Q 001535 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1058)
Q Consensus 894 dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~i~fs~ 973 (1058)
.|.+.-+|+.+++.+.+...+ .++.+-..+-.+.+++.++.||.++.+|.++|+.+-...... +.. -.-+.|..
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~--~~~---~~P~ty~~ 538 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS--GIV---SPPITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS--CCC---SCCEEEEE
T ss_pred CCEEEEECCCCCCEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCC--CCC---CCCEEEEE
T ss_conf 775999807899587326779-997450169769869996799969999999986867988999--962---16779998
Q ss_pred CCCE
Q ss_conf 9989
Q 001535 974 DQVR 977 (1058)
Q Consensus 974 d~~~ 977 (1058)
+|+.
T Consensus 539 ~G~q 542 (582)
T d1flga_ 539 DGEQ 542 (582)
T ss_dssp TTEE
T ss_pred CCEE
T ss_conf 9999
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=82.38 E-value=0.25 Score=20.43 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC-------CHHHHHHH
Q ss_conf 46889888587686604998899999985322323469788999988642336453001113699-------56799999
Q 001535 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (1058)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1058)
.++|.++-+.|++|+..+. .+|..++.+.-..+.....+++.+|..+....+...++....+.+ ...+-..|
T Consensus 28 ~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s~~lL 106 (134)
T d2j49a1 28 YIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLL 106 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHH
T ss_conf 9899999999999997587-999999999607777899999999875899999976588999873995889768999999
Q ss_pred HHHHHH
Q ss_conf 999973
Q 001535 144 LIELKK 149 (1058)
Q Consensus 144 ~~~l~~ 149 (1058)
+.-|++
T Consensus 107 l~fL~~ 112 (134)
T d2j49a1 107 LYFLNE 112 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999986
|