Citrus Sinensis ID: 001555

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050-----

MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWECLFRTPLNNYDAVVLLHRDRLPYPRRLLFPSEVNRGRHVARVNASKAFGPFLVPEEMKGSSEEVKNKMMVDFDPLRCFVGDVEKEYSKKLKLWYDSLGGDAIGLTWERVGSKKREREEAPEEETDSIGVLKAVGELGKGFVRDIYFLKAPRLMS

ccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEccccEEEEEcccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEcccccccccEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccEEEcccccccccHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccHHccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccEEEEEEEccHHHcccccccccccccHHHHHHHHHHHcccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEccccEEEEEEEEcHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHccccEEEEEccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHcccccEEEEEEccccccc

ccccccEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccEEEEEEccccEEEEEEcHHcccccccccEEEEEEEccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccEEEEEEcccccccccEEEEEEEcccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccEEEcccccccccccHHHHHHHHccEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccHccEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccEEEEEEEccHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHccccHHHEEEHHcHcHHHHccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHcccccccccccccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEccccEEEEEEEEccHHHHHHHHHHccccHHccHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccEEEEEcHHHccccHHcccccHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccEEEEEEccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHccccEEEEEEcccccccc

mdadttvtltdpmdYKVEELLKEVHFARAPAITKLVDDTVSAVRKSIskipdafpvtadlapgfvrdigadkvefkfnkpktfkiggsysincvvkpavnvdlfvglpkecfhekdylnhryhaKRCLYLCVIKkhlksspsfdKVEWSAMQNEARKPVLVVYPavksveapgffvriIPTAASLFNIAKLNlkrnnvrafnqdgipratpkynssiledmflEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATsklwnrglyfppkgqigvskeeklqykeafpvvicdpsaqVNLAFRMTSVGFCELQDEAASTLQCMdkcgdggfeetfltkidfpakydyCVRLnlrghtevhalGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVtwrnspsewnienglavldrepllvgISVSSLEKLFRIvdigpnaenKEEALRFRKFWGEKaelrrfkdgtiaesTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLiediplkissvqpldsafrftsvfppephplanerhtvsrlhkltpsciqPLEVMIQLegsgnwpmdHVAIEKTKSAFLIKIGESLqnrwgmtcsateddadIFMSGYAFRLKILHERGLSLvksengnkakrvystdKILFIRGQHASMINglqgrypvfgpVVRVAKRWAASHLFSACLVEEAVELLVAYLFlkplpfnvpcsrvTGFLRFLRLLAEYDWTFSALVVDinndfgpedfkvINDNFMSSRKASEENVQNVNPALFLATAYDkaseawttcspnftELKRLVAYARSSANLLTKLILEDqtdscrweclfrtplnnyDAVVLLHrdrlpyprrllfpsevnrgrhvarvnaskafgpflvpeemkgsseevknkmmvdfdplrcfvgDVEKEYSKKLKLWYDSlggdaigltwervgskkrereeapeeetdsIGVLKAVGelgkgfvrdiyflkaprlms

mdadttvtltdpmdykVEELLKEVHFarapaitklvdDTVSAVRKsiskipdafpvtadLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNvrafnqdgipratpkynssILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSllnqglvdrAKSIRvtwrnspsewnienglavldrePLLVGISVSSLEKLFRIVdigpnaenkeeALRFRKfwgekaelrrfkdgtiaestvweseqwTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLslvksengnkakrvystdKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWECLFRTPLNNYDAVVLLHRDRLPYPRRllfpsevnrgrhvarvnaskafgpflvpeemKGSSEEVKNKMMVDFDPLRCFVGDVEKEYSKKLKLWydslggdaigltwervgskkrereeapeeetdsigvlkavgelgkgfvrdiyflkaprlms

MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGylisillsylvslDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWECLFRTPLNNYDAVVLLHRDRLPYPRRLLFPSEVNRGRHVARVNASKAFGPFLVPEEMKGSSEEVKNKMMVDFDPLRCFVGDVEKEYSKKLKLWYDSLGGDAIGLTWERVGSKKrereeapeeeTDSIGVLKAVGELGKGFVRDIYFLKAPRLMS

***********PMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVF************TVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNF***********QNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWECLFRTPLNNYDAVVLLHRDRLPYPRRLLFPSEVNRGRHVARVNASKAFGPFLV**************MMVDFDPLRCFVGDVEKEYSKKLKLWYDSLGGDAIGLTWERV*****************IGVLKAVGELGKGFVRDIYFLKA*****

*****TVTLTDPMDYKVEELLKEVHFAR*PAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNN**********RATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLY****************YKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNS***************EPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFS*************SLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLV**************DKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFG**********FM***KASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWECLFRTPLNNYDAVVLLHRDRLPYPRRL************************************VKNKMMVDFDPLRCFVGDVEKEYSKKLKLWYDSLGGDAIGLTWE*******************IGVLKAVGELGKGFVRDIYFLKAPR***

*****TVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWECLFRTPLNNYDAVVLLHRDRLPYPRRLLFPS****************FGPFLVPEEMKGSSEEVKNKMMVDFDPLRCFVGDVEKEYSKKLKLWYDSLGGDAIGLTWERV*************ETDSIGVLKAVGELGKGFVRDIYFLKAP****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1055	2.2.26 [Sep-21-2011]
Q6NRY2		1147	Nucleolar protein 6 OS=Xe	N/A	no	0.910	0.837	0.301	1e-125
Q5M7P5		1145	Nucleolar protein 6 OS=Xe	yes	no	0.855	0.788	0.313	1e-119
Q8R5K4		1152	Nucleolar protein 6 OS=Mu	yes	no	0.894	0.819	0.292	1e-117
Q9H6R4		1146	Nucleolar protein 6 OS=Ho	yes	no	0.889	0.818	0.289	1e-114
B4LWT7		1184	Nucleolar protein 6 OS=Dr	N/A	no	0.878	0.782	0.260	2e-82
Q295U7		1212	Nucleolar protein 6 OS=Dr	yes	no	0.833	0.725	0.262	2e-81
B4PR18		1199	Nucleolar protein 6 OS=Dr	N/A	no	0.775	0.682	0.279	3e-81
B4GFN6		1212	Nucleolar protein 6 OS=Dr	N/A	no	0.833	0.725	0.261	1e-80
B4NIM9		1202	Nucleolar protein 6 OS=Dr	N/A	no	0.818	0.718	0.259	8e-79
Q8IH00		1193	Nucleolar protein 6 OS=Dr	yes	no	0.833	0.736	0.263	1e-77

>sp\|Q6NRY2\|NOL6_XENLA Nucleolar protein 6 OS=Xenopus laevis GN=nol6 PE=2 SV=2	Back alignment and function desciption

 Score =  449 bits (1156), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 315/1046 (30%), Positives = 522/1046 (49%), Gaps = 85/1046 (8%)

Query: 10   TDPMDYKVEELLKEVHFA--RAPAITKLVDDTVSAVRKSISKIP-----DAFPVTADLAP 62
            T+ +  ++EELL+EV     R   I   + + ++A+  +I + P     D   +++ +  
Sbjct: 81   TNLLRMQIEELLQEVKLKEKRRKTIDGFLHE-INALLGTIPETPKTDLTDQSWLSSSIKV 139

Query: 63   GFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRY 122
             F++     K +F F  P + K+ GSY +   +KP +NVDL V +P+E    KD LN RY
Sbjct: 140  PFLQVPYQVKGKFSFLPPSSIKVVGSYLLGTCIKPEINVDLAVTMPQEILQVKDNLNQRY 199

Query: 123  HAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTA 182
              KR LYL  I  HL  +  F  V+++ M +   KP+L++ P  K  +     + I P  
Sbjct: 200  SRKRALYLAHIASHLTDNKLFSSVKFTYMNSNHLKPILLLRPQGKDEKLVTVRIHICPPP 259

Query: 183  ASLFNIAKLNLKRNNVRA-------FNQDGI-PRATPKYNSSILEDMFLEDNAEYVEKTI 234
               F +++L   +NNVR           +G+    TP YN++IL D+ LE +  ++    
Sbjct: 260  G-FFKLSRLYPNKNNVRTSWYTEQQTETEGVCDPPTPYYNNTILSDLTLEHHLHHLTNCA 318

Query: 235  SRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVV 294
            + +  + +A+ LLKVW  QR       C NG+L S+L+SYL+S +KIN  M   Q+LR  
Sbjct: 319  TDFPGMKDAIALLKVWLHQRQLDKGFGCFNGFLASMLISYLLSKNKINKVMSGYQVLRNT 378

Query: 295  LDFIATSKLWNRGLYFPPKGQIGVSKEEKL----QYKEAFPVVICDPSAQVNLAFRMTSV 350
            L F+AT+ L   G+       +    +  L     + EAF VV  DP   VNL   MT+ 
Sbjct: 379  LQFLATTDLTVNGI------TMATCSDSSLPSLPDFHEAFQVVFVDPMGVVNLCADMTAS 432

Query: 351  GFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLN----LRGHTEVHALG 406
             + ++Q EA+ +L+ +D     GF    +    F   +D+   L     L+G  +   L 
Sbjct: 433  KYRQIQFEASESLKVLDDTNVNGFHLLLMVPKPFVRTFDHVFHLTNVAKLQGTCKKMKLL 492

Query: 407  FCLDDECWRLYEQKVH---SLLNQGLVDRAKSIRVTWRNSPSEWNI-ENGLAVLDREPLL 462
              L D         +    S+L++GL  R   +  T  + P EWN+ E      D   + 
Sbjct: 493  NQLIDRGGDYLATALPYLLSVLSKGLGPRVSLLSHTLTHKP-EWNVGEEPAKHKDSGLVT 551

Query: 463  VGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQ-W 521
            VG+ +   E    ++D GP A++  EAL FR FWGEK+ELRRF+DG+I E+ VW     +
Sbjct: 552  VGLLLDP-ELYTNVLDKGPAADS-SEALDFRAFWGEKSELRRFQDGSICEAVVWTGGSLY 609

Query: 522  TRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFS--ASLLEAFEVLS 579
             +  + + I++Y+L  H ++ +  +    + LD  L  G +         S++++++ LS
Sbjct: 610  DKRKVPELIVKYLLELHANIPESCINYTGNALDCVLSRGRETSTEEEKMVSIIQSYDDLS 669

Query: 580  KRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEP--------HPLANERHTVSRLHKLTPS 631
            ++L  + D+PL I+SVQ      R+T VFPP P        H L  ++  +    K  P+
Sbjct: 670  RKLWNLNDLPLTITSVQGTHPCLRYTDVFPPLPVKPDWSSYHLLREKKCLIPNPEKPCPA 729

Query: 632  CIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSG 691
             + P++V+  +EGSG WP D  AI++ K+AF I++ E L ++  + C+ +    D++  G
Sbjct: 730  YVSPVKVICHMEGSGKWPQDKDAIKRLKAAFQIRLSELLSSQHQLLCNPSATHTDVYKDG 789

Query: 692  YAFRLKILHERGLSLVK---SENGNKAKRVYSTDKILFIRGQH----ASMINGLQGRYPV 744
            Y FR+++ + R    +K   +  G    +       L +   H    +S ++GL  ++P 
Sbjct: 790  YVFRVQVAYHREPQYMKEFVTPEGMLKYQDTEESMQLEMETNHLPHLSSTLHGLHQQHPA 849

Query: 745  FGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEY 804
            FG   R+AKRW  S L      EE ++LLVA+LFL P P++ P S + GFLRFL L+A +
Sbjct: 850  FGGTSRLAKRWIQSQLLGDSFSEECLDLLVAHLFLHPAPYSPPSSALVGFLRFLHLVATF 909

Query: 805  DWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTT 864
            DW  S L+V++N +    ++  I ++F+S+R           P +F+AT  DK    WT 
Sbjct: 910  DWKNSPLIVNLNGELKGSEYTEIQNDFISARAQL--------PVMFIATPKDKKDSVWTK 961

Query: 865  CSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWECLFRTPLNNYDAVVLLHRDRLPY 924
              P    L+RL+     S   L + ++ D   +  ++ +FR PL+ YD ++ L+      
Sbjct: 962  NQPTAQMLQRLIVLCLESLRALEQQLM-DPRGNHDYKMIFRPPLDLYDVLIRLN------ 1014

Query: 925  PRRLLFPSEVNRGRHVARVNASKAFGPFLVPEEMKGSSEEVKNKM--MVDFDPLRCFVGD 982
                  P +++R R      A   F        M     +VK+ M  +V +DP++ F+ +
Sbjct: 1015 ------PKQISRHREAVDQPAKSFF------RGMLKEGAQVKDLMFPVVGYDPIQLFLQE 1062

Query: 983  VEKEYSKKLKLWYDSLGGDAIGLTWE 1008
            + + Y +    ++D  GGD IG+ W+
Sbjct: 1063 LREAYGEFALFFHDLHGGDVIGVLWK 1088

Xenopus laevis (taxid: 8355)

>sp\|Q5M7P5\|NOL6_XENTR Nucleolar protein 6 OS=Xenopus tropicalis GN=nol6 PE=2 SV=1	Back alignment and function description

>sp\|Q8R5K4\|NOL6_MOUSE Nucleolar protein 6 OS=Mus musculus GN=Nol6 PE=2 SV=2	Back alignment and function description

>sp\|Q9H6R4\|NOL6_HUMAN Nucleolar protein 6 OS=Homo sapiens GN=NOL6 PE=1 SV=2	Back alignment and function description

>sp\|B4LWT7\|NOL6_DROVI Nucleolar protein 6 OS=Drosophila virilis GN=Mat89Ba PE=3 SV=1	Back alignment and function description

>sp\|Q295U7\|NOL6_DROPS Nucleolar protein 6 OS=Drosophila pseudoobscura pseudoobscura GN=Mat89Ba PE=3 SV=2	Back alignment and function description

>sp\|B4PR18\|NOL6_DROYA Nucleolar protein 6 OS=Drosophila yakuba GN=Mat89Ba PE=3 SV=1	Back alignment and function description

>sp\|B4GFN6\|NOL6_DROPE Nucleolar protein 6 OS=Drosophila persimilis GN=Mat89Ba PE=3 SV=1	Back alignment and function description

>sp\|B4NIM9\|NOL6_DROWI Nucleolar protein 6 OS=Drosophila willistoni GN=Mat89Ba PE=3 SV=1	Back alignment and function description

>sp\|Q8IH00\|NOL6_DROME Nucleolar protein 6 OS=Drosophila melanogaster GN=Mat89Ba PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1055
225430750		1057	PREDICTED: nucleolar protein 6-like [Vit	0.995	0.993	0.731	0.0
297735151		1066	unnamed protein product [Vitis vinifera]	0.995	0.984	0.727	0.0
255576530		1046	nucleolar RNA-associated protein, putati	0.983	0.992	0.712	0.0
356538192		1050	PREDICTED: nucleolar protein 6-like [Gly	0.993	0.998	0.689	0.0
356495417		1055	PREDICTED: nucleolar protein 6-like [Gly	0.997	0.997	0.678	0.0
357483427		1048	Nucleolar protein [Medicago truncatula]	0.987	0.994	0.667	0.0
297837003		1049	hypothetical protein ARALYDRAFT_474974 [	0.993	0.999	0.676	0.0
145337144		1053	uncharacterized protein [Arabidopsis tha	0.994	0.996	0.671	0.0
449449451		1070	PREDICTED: nucleolar protein 6-like [Cuc	0.997	0.983	0.657	0.0
147792211		1040	hypothetical protein VITISV_009031 [Viti	0.927	0.940	0.663	0.0

>gi\|225430750\|ref\|XP_002266705.1\| PREDICTED: nucleolar protein 6-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1617 bits (4188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 774/1058 (73%), Positives = 895/1058 (84%), Gaps = 8/1058 (0%)

Query: 1    MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADL 60
            MD+DT   + +PMD KV ELLKEV    + A TKLVDDTVSA++++I  IP+   VTAD 
Sbjct: 1    MDSDT---IMEPMDLKVRELLKEVQLDYSSATTKLVDDTVSAIKQAIDTIPEDLKVTADF 57

Query: 61   APGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNH 120
            AP FVRDIGADKVEF F KPK F+IGGSYSI CV KP V++DLFV LPKECFHEKDYLNH
Sbjct: 58   APQFVRDIGADKVEFNFKKPKLFEIGGSYSIRCVAKPDVDIDLFVRLPKECFHEKDYLNH 117

Query: 121  RYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIP 180
            RYHAKR LYLC+IKK+L SS    KVEWS +QNEARKPVLVVYPA++  E PG  VRIIP
Sbjct: 118  RYHAKRFLYLCIIKKYLNSSSFIRKVEWSTLQNEARKPVLVVYPAMELAEVPGLSVRIIP 177

Query: 181  TAASLFNIAKLNLKRNNVRAFNQD-GIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE 239
            TA SLF+I KLNLKRNNV +  QD   P+ATPKYNSSILEDMFLEDNAE+V++T   WKE
Sbjct: 178  TATSLFSILKLNLKRNNVCSLKQDESTPQATPKYNSSILEDMFLEDNAEFVKRTFLGWKE 237

Query: 240  LGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVS---LDKINNSMKALQILRVVLD 296
            LGEALILLKVWARQRSSIY +DCLNG+LIS+++SYL +    + INNSMK +QI RV LD
Sbjct: 238  LGEALILLKVWARQRSSIYAYDCLNGFLISVIMSYLATDSGRNLINNSMKPMQIFRVTLD 297

Query: 297  FIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQ 356
            FIATSKLWN GLYF  +  + +SKE   QY   FPVVI +  A  NLAFR+T  GF ELQ
Sbjct: 298  FIATSKLWNTGLYFKSQSLLNISKEVHYQYLRLFPVVISESLAHFNLAFRITGGGFLELQ 357

Query: 357  DEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRL 416
            DEA  TL C+ KC DGGFEE F+TKID+PAKYDYC+RLNL+G+++V+ALGFCLD+ECWR 
Sbjct: 358  DEAVLTLSCIGKCKDGGFEELFMTKIDYPAKYDYCMRLNLKGNSDVYALGFCLDEECWRS 417

Query: 417  YEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRI 476
            +EQKVH LL QGL DRAK IRV+W+N+ SE N+ENGL++ DREPLL+GISVSSLEK FR+
Sbjct: 418  FEQKVHFLLCQGLSDRAKFIRVSWKNATSECNVENGLSIFDREPLLIGISVSSLEKAFRV 477

Query: 477  VDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLL 536
            VD+GPNAE+K+EAL+FRKFWGEKAELRRFKDG IAESTVWES+QW RH I+K I EY+LL
Sbjct: 478  VDVGPNAEHKDEALKFRKFWGEKAELRRFKDGMIAESTVWESKQWERHTIIKRITEYLLL 537

Query: 537  RHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQ 596
            RHLSLS+ N+V IVDQLDFSL++G  D +SFS SLLEAFEVLSKRLHL++DIPLK+SSVQ
Sbjct: 538  RHLSLSERNIVHIVDQLDFSLVNGVGDSISFSGSLLEAFEVLSKRLHLLKDIPLKVSSVQ 597

Query: 597  PLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIE 656
            PLDSAFRFTSVFPPEPHPLANE+  V RL+KLT +CIQPLEVMIQLEGSGNWPMD VAIE
Sbjct: 598  PLDSAFRFTSVFPPEPHPLANEKSAVPRLNKLTSTCIQPLEVMIQLEGSGNWPMDDVAIE 657

Query: 657  KTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENG-NKA 715
            KTKSAFL++IGESLQN WGM C+ATE++ D+FMSGYAFRL+ILHERGLSL+  +NG N+ 
Sbjct: 658  KTKSAFLLRIGESLQNNWGMICTATEENVDVFMSGYAFRLRILHERGLSLLNRQNGSNQL 717

Query: 716  KRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVA 775
            K + S DK LF RGQH+SMINGLQG YP++GPVVR+AKRW ASHLFSACLVEEAVELLVA
Sbjct: 718  KHISSVDKELFTRGQHSSMINGLQGCYPIYGPVVRLAKRWVASHLFSACLVEEAVELLVA 777

Query: 776  YLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSR 835
            YLFLKPLPF VPCSR++GFLRFLRLL+EYDW FSALVVDIN+D  P D K IN+NF SSR
Sbjct: 778  YLFLKPLPFYVPCSRISGFLRFLRLLSEYDWNFSALVVDINSDLSPSDEKEINENFTSSR 837

Query: 836  KASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQT 895
            K  EEN QNVNPA+FLATAYDKASEAWT  SPN +EL+RLVAYARSSANLLTKLIL  Q 
Sbjct: 838  KGYEENAQNVNPAMFLATAYDKASEAWTRFSPNSSELRRLVAYARSSANLLTKLILGGQI 897

Query: 896  DSCRWECLFRTPLNNYDAVVLLHRDRLPYPRRLLFPSEVNRGRHVARVNASKAFGPFLVP 955
            DS +WECLFRTPLNNYDAV+LLHR+++PYP+RLLFPSE+N+G+HVA+ NASKAF PFL+P
Sbjct: 898  DSYKWECLFRTPLNNYDAVILLHREKMPYPQRLLFPSEMNQGKHVAQGNASKAFHPFLLP 957

Query: 956  EEMKGSSEEVKNKMMVDFDPLRCFVGDVEKEYSKKLKLWYDSLGGDAIGLTWERVGSKKR 1015
            E MKG+S ++K+ ++VDFDPLRCF+GD+E+E+    KLWYDSLGGDAIG+ WER  SKKR
Sbjct: 958  EHMKGNSPDLKDTLLVDFDPLRCFIGDLEEEFPNAFKLWYDSLGGDAIGMMWERSSSKKR 1017

Query: 1016 EREEAPEEETDSIGVLKAVGELGKGFVRDIYFLKAPRL 1053
             R E  EEE D + VLKAVGE+GKGFVR IY LK+PRL
Sbjct: 1018 GRSEENEEEKDPVNVLKAVGEVGKGFVRSIYLLKSPRL 1055

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297735151\|emb\|CBI17513.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255576530\|ref\|XP_002529156.1\| nucleolar RNA-associated protein, putative [Ricinus communis] gi\|223531380\|gb\|EEF33215.1\| nucleolar RNA-associated protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356538192\|ref\|XP_003537588.1\| PREDICTED: nucleolar protein 6-like [Glycine max]	Back alignment and taxonomy information

>gi\|356495417\|ref\|XP_003516574.1\| PREDICTED: nucleolar protein 6-like [Glycine max]	Back alignment and taxonomy information

>gi\|357483427\|ref\|XP_003612000.1\| Nucleolar protein [Medicago truncatula] gi\|355513335\|gb\|AES94958.1\| Nucleolar protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297837003\|ref\|XP_002886383.1\| hypothetical protein ARALYDRAFT_474974 [Arabidopsis lyrata subsp. lyrata] gi\|297332224\|gb\|EFH62642.1\| hypothetical protein ARALYDRAFT_474974 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|145337144\|ref\|NP_176566.3\| uncharacterized protein [Arabidopsis thaliana] gi\|110741755\|dbj\|BAE98823.1\| hypothetical protein [Arabidopsis thaliana] gi\|332196029\|gb\|AEE34150.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449449451\|ref\|XP_004142478.1\| PREDICTED: nucleolar protein 6-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147792211\|emb\|CAN72980.1\| hypothetical protein VITISV_009031 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1055
TAIR\|locus:2195523		1053	AT1G63810 "AT1G63810" [Arabido	0.994	0.996	0.657	0.0
RGD\|1308033		1154	Nol6 "nucleolar protein 6 (RNA	0.584	0.534	0.295	2e-104
MGI\|MGI:2140151		1152	Nol6 "nucleolar protein family	0.583	0.534	0.301	3.1e-104
UNIPROTKB\|F1SE91		1145	NOL6 "Uncharacterized protein"	0.555	0.511	0.297	1.8e-101
UNIPROTKB\|Q9H6R4		1146	NOL6 "Nucleolar protein 6" [Ho	0.582	0.536	0.296	8.1e-101
UNIPROTKB\|F1PEI3		1146	NOL6 "Uncharacterized protein"	0.553	0.509	0.304	2e-100
UNIPROTKB\|A5PJU0		1146	NOL6 "Uncharacterized protein"	0.554	0.510	0.298	4e-99
UNIPROTKB\|B4LWT7		1184	Mat89Ba "Nucleolar protein 6"	0.823	0.733	0.266	1.2e-76
DICTYBASE\|DDB_G0291438		1278	nol6 "Nrap family protein" [Di	0.377	0.311	0.282	1e-71
UNIPROTKB\|B4K5S6		1187	Mat89Ba "Nucleolar protein 6"	0.761	0.676	0.271	4.6e-71

TAIR\|locus:2195523 AT1G63810 "AT1G63810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3676 (1299.1 bits), Expect = 0., P = 0.
 Identities = 696/1058 (65%), Positives = 842/1058 (79%)

Query:     1 MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADL 60
             M+ADT    TD    KV +LLK+       ++ KLVDDTVS+++++I  IP+ F VT++L
Sbjct:     1 MEADTK---TDSRTLKVNDLLKDARLDY-DSLRKLVDDTVSSIKEAIDGIPEKFQVTSEL 56

Query:    61 APGFVRDIGADK-VEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLN 119
             AP FV DIGADK VEF F KP  F + GSYSI  + KP  +VDL V LPKECF+EKDY+N
Sbjct:    57 APSFVEDIGADKEVEFSFKKPNGFNLCGSYSICGMAKPDTSVDLLVHLPKECFYEKDYMN 116

Query:   120 HRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRII 179
             HRYHAKRCLYLCVI+KHL SS S +KV WS + NEARKPVLVV+PA K  + PGF +R+I
Sbjct:   117 HRYHAKRCLYLCVIEKHLLSSSSIEKVVWSTLHNEARKPVLVVFPAKKLDQFPGFSIRLI 176

Query:   180 PTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE 239
             P+A SLF++AKL++ RNNVR+   DG+P  TP YNSSILEDMFLE+N+E+++KT S WKE
Sbjct:   177 PSATSLFSVAKLSISRNNVRSVTADGVPEPTPTYNSSILEDMFLEENSEFLKKTFSEWKE 236

Query:   240 LGEALILLKVWARQRSSIYVHDCLNGXXXXXXXXXXXXXDKINNSMKALQILRVVLDFIA 299
             L +ALILLK+WARQRSSIYVHDCLNG              KIN ++ AL I RV LDFIA
Sbjct:   237 LSDALILLKIWARQRSSIYVHDCLNGFLISVILSYLATHSKINKALSALDIFRVTLDFIA 296

Query:   300 TSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEA 359
             TSKLW RGLY PP+ +I VSKEEK+Q++E FPVVICD S  VNLAFRMTSVGF ELQDEA
Sbjct:   297 TSKLWERGLYLPPQSEIRVSKEEKMQFRELFPVVICDSSTFVNLAFRMTSVGFLELQDEA 356

Query:   360 ASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQ 419
             + TL+CM+K  DGGFEE F+TKID+P KYD+C+RL L+G T V   GFCLD ECWRLYEQ
Sbjct:   357 SLTLKCMEKLRDGGFEEIFMTKIDYPVKYDHCIRLQLKGKTAVSLSGFCLDKECWRLYEQ 416

Query:   420 KVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDI 479
             KVHSLL +GL DRAKSIRV WRN+  +W++E+GL+VLDREPL +GISVSS EK +R VDI
Sbjct:   417 KVHSLLLEGLGDRAKSIRVVWRNTNQDWHVESGLSVLDREPLFIGISVSSTEKAYRTVDI 476

Query:   480 GPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHL 539
             GP+AENK EALRFRKFWGEK++LRRFKDG I+ESTVWE++QWT+HLI+K I+EY+L RHL
Sbjct:   477 GPDAENKIEALRFRKFWGEKSDLRRFKDGRISESTVWETQQWTKHLIMKQIVEYILKRHL 536

Query:   540 SLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLD 599
             SL+ +++VQ+VDQLDFSL +G KD +S S +L++A+EVLSK L  IE IPLK+SSVQ LD
Sbjct:   537 SLTSDDIVQLVDQLDFSLNYGGKDPISLSGNLVQAYEVLSKCLREIEGIPLKVSSVQSLD 596

Query:   600 SAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTK 659
             SA RFTSVFPPEPHP+A E+    RL KL PSCI  +EVMIQLEGSGNWPMD +A+EKTK
Sbjct:   597 SALRFTSVFPPEPHPVACEKIDSRRLQKLIPSCIPAMEVMIQLEGSGNWPMDDLAVEKTK 656

Query:   660 SAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENG-NKAKRV 718
             SAFL+KI ESLQN  G+ C+ATED+ D+F+ GYAFRL+ILHERGLSLVK E G +  K V
Sbjct:   657 SAFLLKIAESLQNVKGIPCTATEDNVDVFIGGYAFRLRILHERGLSLVKREIGVDPVKHV 716

Query:   719 YSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLF 778
              STDK+LFIR QHASMINGLQGR+PV+ PV R+AKRW ++HLFS CL EEA+ELLVAYLF
Sbjct:   717 SSTDKMLFIRSQHASMINGLQGRFPVYAPVARLAKRWVSAHLFSGCLAEEAIELLVAYLF 776

Query:   779 LKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKAS 838
             L PLP  VP SR+ GFLRFLRLLA+Y+W F  L+VDINNDFG  D K INDNFMSSRK  
Sbjct:   777 LTPLPLGVPSSRINGFLRFLRLLADYEWMFYPLIVDINNDFGRNDEKEINDNFMSSRKGY 836

Query:   839 EENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSC 898
             EE+ QN++ A+FLA  YDKASEAWT+ SPN  E KRLVAYARSSAN+L+K++L++  DS 
Sbjct:   837 EEDKQNISSAMFLAAPYDKASEAWTSTSPNLLEQKRLVAYARSSANVLSKMVLQEHNDSV 896

Query:   899 RWECLFRTPLNNYDAVVLLHRDRLPYPRRLLFPSEVNRGRHVARVNASKAFGPFLVPEEM 958
             +WECLFRTPLNNYDAV+LLHRD+LPYPRRLLFPSE+N+G+HVAR  AS+ F PF+ P ++
Sbjct:   897 QWECLFRTPLNNYDAVILLHRDKLPYPRRLLFPSELNQGKHVARGKASRLFNPFMSPGDL 956

Query:   959 KGSSEEVKNKMMVDFDPLRCFVGDVEKEYSKKLKLWYDSLGGDAIGLTWERVGSKKXXXX 1018
             K S EE+KNK+MVDF+P +C +  +++E+   LK WYD +GGDAIGLTW +  SKK    
Sbjct:   957 KRSHEELKNKLMVDFEPTKCLLSGLQEEFGT-LKPWYDHIGGDAIGLTWNKHNSKKRERD 1015

Query:  1019 XXXXXXTDS--IGVLKAVGELGKGFVRDIYFLKAPRLM 1054
                    +S  + +LKAVGE+GKG VRDIY LK PR +
Sbjct:  1016 EEEEEEEESNPMEMLKAVGEMGKGLVRDIYLLKPPRFV 1053

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

RGD\|1308033 Nol6 "nucleolar protein 6 (RNA-associated)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:2140151 Nol6 "nucleolar protein family 6 (RNA-associated)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SE91 NOL6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9H6R4 NOL6 "Nucleolar protein 6" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PEI3 NOL6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A5PJU0 NOL6 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|B4LWT7 Mat89Ba "Nucleolar protein 6" [Drosophila virilis (taxid:7244)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291438 nol6 "Nrap family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|B4K5S6 Mat89Ba "Nucleolar protein 6" [Drosophila mojavensis (taxid:7230)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1055
pfam03813		929	pfam03813, Nrap, Nrap protein	0.0

>gnl\|CDD\|217744 pfam03813, Nrap, Nrap protein	Back alignment and domain information

 Score =  734 bits (1896), Expect = 0.0
 Identities = 309/1021 (30%), Positives = 462/1021 (45%), Gaps = 156/1021 (15%)

Query: 88   SYSINCVVK--PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSS-PSFD 144
            S+++   +K    ++VDL V +PKE F EKDYLN+RY  KR  YL  +  HLK       
Sbjct: 1    SFALKTGIKQPKGLSVDLAVTMPKELFQEKDYLNYRYFHKRAFYLAYLAAHLKKKLDLDL 60

Query: 145  KVEWSAMQNEARKPVLVVYPAVKSVEA---PGFFVRIIPTA-ASLFNIAKLNLKRNNVR- 199
            K+ +  +  +  +PVLV+ P  K         F +R+IP A   LF   KL   +NN+R 
Sbjct: 61   KISYEYLNGDPLRPVLVLEPKTKKDSDFTKSKFSIRLIPAAPDGLFPPKKLLPDKNNIRP 120

Query: 200  -AFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQR--SS 256
             + + +     TP YNSS+L D  LE   + + KT    +   +A IL +VW RQR  SS
Sbjct: 121  ASDDDEAELPPTPFYNSSVLSDSTLEPYLKLLYKTKKSCEAFKDACILGRVWLRQRGFSS 180

Query: 257  IYVHDCLNGYLISILLSYLVSLD------KINNSMKALQILRVVLDFIATSKLWNRGLYF 310
             +      G+  ++L++ L+          +  S+ + Q+ +  + F+AT+ L    L  
Sbjct: 181  SFSQGGFGGFEWAVLMALLLQGGGLNGNKILLKSLSSYQLFKATIQFLATTDLTTGPLSL 240

Query: 311  PPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCG 370
                      E K  +      V  D S  +N+  +MT   +  L+ EA  TL  ++   
Sbjct: 241  SS----ASESESKYIFFGFDTPVFFDGSRGLNILAKMTPWSYRRLRHEAKETLDLLNDSV 296

Query: 371  DGGFEETFLTKIDFP-AKYDYCVRLN-------LRGHTEVHALGFCLDDECWRLYEQKVH 422
            D  F+  FLTK D P  ++D  +RLN            ++  + F            KV+
Sbjct: 297  DDQFDPIFLTKSDEPPLRFDLILRLNPEELIDSFGSLEKIRFIKFENFLL------NKVY 350

Query: 423  SLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPN 482
             +L + L DR K I ++  +  S W IE          + VG+ ++  E+ +R+VD GP+
Sbjct: 351  EVLKKALGDRVKLIHIS-ESPSSPWPIEKKKPTKKTSSISVGLLLNP-EEAYRLVDKGPS 408

Query: 483  AENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLS 542
            AE+KEEA  FR FWGEKAELRRFKDG+I ES VW S   +  LI++ I+ Y+L RHLS+ 
Sbjct: 409  AEDKEEAAEFRSFWGEKAELRRFKDGSITESVVWSS--TSSRLIVRQIVRYILKRHLSIP 466

Query: 543  KENVVQIVDQLDFSLLHGAK------DLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQ 596
             +++    D+ D  L            L SF   L+ AF+ L K L  +ED+PL      
Sbjct: 467  SDDITYSGDEFDQLLPLPGALGQKTTSLSSFQN-LIRAFDSLEKSLRDLEDLPL------ 519

Query: 597  PLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIE 656
                                                          E SG WP +  AI+
Sbjct: 520  ----------------------------------------------ESSGKWPDELEAIQ 533

Query: 657  KTKSAFLIKIGESLQNRWGM------------TCSATEDDADIF-MSGYAFRLKILHERG 703
            KTK+AFL+KIGE L+   G               +      D+    GY FRL+ILHER 
Sbjct: 534  KTKTAFLLKIGEKLEASSGSEYKSRVGLENSVPPNLNNAFLDVLTPEGYGFRLRILHERE 593

Query: 704  LSLVKSE--NGNKAKR------VYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRW 755
             +L++ +    N   +      + + ++   I  +H   I+ L  R+P++ P VR+AKRW
Sbjct: 594  ETLLERQVKTANPVTKQEAADALSAFERRFQILPRHTRAISTLCTRFPLYSPTVRLAKRW 653

Query: 756  AASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDI 815
              SHL    L EE +ELLVA +FL+P P++ P S  TGFLR L  L+ +DW    L++D+
Sbjct: 654  LDSHLLLGHLPEELIELLVAKVFLQPYPWDTPSSVETGFLRTLHFLSRWDWREEPLILDL 713

Query: 816  NNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRL 875
             +    +  K I  NF S RK    +    + ALF+AT YD +   WT   P+     RL
Sbjct: 714  VDKLTEQQIKEIETNFESWRK---IDPAGNHLALFVATDYDPSGILWTE-GPSLPIAARL 769

Query: 876  VAYARSSANLLTKLILEDQTDSCRWECLFRTPLNNYDAVVLLHRDRLPYPRRLLFPSEVN 935
             A A+++      LI E+  +    E LF   L +YD V+ L    L      +  S  +
Sbjct: 770  TALAKAA----VNLIREEGLNRLDIELLFTPSLKDYDFVIHLKPKILLKSSSGILSS--S 823

Query: 936  RGRHVARVNASKAFGPFLVPEEMKGSSEEVKNKMMVDFDPLRCFVGDVEKEYSKKLKLWY 995
            + ++             L     KGS      K    FDP++ FV ++  +Y   +  +Y
Sbjct: 824  KFKN-------------LSQGLSKGSFP----KDAAKFDPVQLFVKELNAKYGNSILFFY 866

Query: 996  DSLGGDAIGLTWERVGSKKRER----------EEAPEEETDSIGVLKAVGELGKGFVRDI 1045
            D  GGD IG  W     K ++            +  E E +   +L  +  LG   V  I
Sbjct: 867  DPEGGDVIGGLWNPQTLKPKKFKVNLGYNVKPVDDEEVELNKEAILNEIARLGGDLVERI 926

Query: 1046 Y 1046
             
Sbjct: 927  E 927

Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript. Length = 929

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1055
PF03813		972	Nrap: Nrap protein; InterPro: IPR005554 Members of	100.0
KOG2054		1121	consensus Nucleolar RNA-associated protein (NRAP)	100.0
PTZ00418		593	Poly(A) polymerase; Provisional	99.61
COG5186		552	PAP1 Poly(A) polymerase [RNA processing and modifi	99.45
KOG2245		562	consensus Poly(A) polymerase and related nucleotid	99.41
PF04928		254	PAP_central: Poly(A) polymerase central domain; In	99.08
TIGR03671		408	cca_archaeal CCA-adding enzyme.	98.87
PRK13300		447	tRNA CCA-pyrophosphorylase; Provisional	98.78
COG1746		443	CCA1 tRNA nucleotidyltransferase (CCA-adding enzym	98.21
PF03813		972	Nrap: Nrap protein; InterPro: IPR005554 Members of	98.07
smart00572		246	DZF domain in DSRM or ZnF_C2H2 domain containing p	96.26
COG5260		482	TRF4 DNA polymerase sigma [DNA replication, recomb	95.98
smart00572		246	DZF domain in DSRM or ZnF_C2H2 domain containing p	95.79
PF04928		254	PAP_central: Poly(A) polymerase central domain; In	95.64
KOG1906		514	consensus DNA polymerase sigma [Replication, recom	94.96
PRK13300		447	tRNA CCA-pyrophosphorylase; Provisional	94.81
KOG2054		1121	consensus Nucleolar RNA-associated protein (NRAP)	92.85
PF09249		114	tRNA_NucTransf2: tRNA nucleotidyltransferase, seco	92.52
PF07528		248	DZF: DZF domain; InterPro: IPR006561 This domain i	92.27
PTZ00418		593	Poly(A) polymerase; Provisional	90.75
TIGR03671		408	cca_archaeal CCA-adding enzyme.	90.75
cd05400		143	NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT	89.34
cd05402		114	NT_PAP_TUTase Nucleotidyltransferase (NT) domain o	89.01
PF07528		248	DZF: DZF domain; InterPro: IPR006561 This domain i	88.38
PF10421		190	OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain	86.37
KOG2245		562	consensus Poly(A) polymerase and related nucleotid	84.42

>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human	Back alignment and domain information

Probab=100.00  E-value=3.2e-228  Score=2125.81  Aligned_cols=913  Identities=40%  Similarity=0.649  Sum_probs=808.4

Q ss_pred             eeccccccC--CCcceeEEEecCccccCcccccccchhhhHHhHHHHHHHhh--ccCCCCccEEEeccCCCcceeeEEEE
Q 001555           88 SYSINCVVK--PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHL--KSSPSFDKVEWSAMQNEARKPVLVVY  163 (1055)
Q Consensus        88 S~~l~t~~k--~~~~VDl~v~mP~~~fq~KDylN~RYf~KRA~YLa~iA~~L--~~~~~~~~v~~~~~~~d~~kPil~l~  163 (1055)
                      ||+++|++|  ++.+|||+||||++|||+|||||||||||||+|||+||++|  ++.+...+++|+++|||++||||+|+
T Consensus         1 S~~l~t~~k~~~~~~VDl~v~mP~~~fq~KDyln~RY~~KRA~YLa~iA~~L~~~~~~~~~~v~~~~~~gd~~kPil~l~   80 (972)
T PF03813_consen    1 SYALKTMIKSKPNLTVDLAVEMPKSLFQEKDYLNYRYFHKRALYLAYIAAHLQKKKSKLFVDVSFEYLNGDPLKPILVLR   80 (972)
T ss_pred             CcccccccccCCCCeeEEEEeCChhhcCchhhccchHHHHHHHHHHHHHHHHhhhccccceeEEEEeCCCCCCCCeEEEE
Confidence            899999999  88999999999999999999999999999999999999999  55578899999999999999999999


Q ss_pred             eCCCCC----CCCCeEEEEeecCC-CcccccccCcccCCccCCCCCC----CCCCCCccchhhhhccChHHHHHHHHHHh
Q 001555          164 PAVKSV----EAPGFFVRIIPTAA-SLFNIAKLNLKRNNVRAFNQDG----IPRATPKYNSSILEDMFLEDNAEYVEKTI  234 (1055)
Q Consensus       164 p~~~~~----~~~~~~IRii~~~~-~~F~~~rl~P~rnnvR~~~~~~----~~~pTP~YNssIl~D~~~~~~l~~l~~~~  234 (1055)
                      |+++..    .+++|+||||||++ ++||++||+|+|||||.....+    .++|||+||++||+||++.+|+++|+++.
T Consensus        81 p~~~~~~~~~~~~~~~iRi~~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~~~~~pTP~YNssIL~D~~~~~~l~~l~~~~  160 (972)
T PF03813_consen   81 PKGKKDSDDFSKTKFRIRIIPSIPSDTFPLSRLAPSRNNVRPSWFDEEDSSSLPPTPHYNSSILEDMLMEEHLKYLHEAS  160 (972)
T ss_pred             ECCccccccccCCcEEEEEEecCCcccCCHHhcCCCCCccCcCcccccccCCCCCCCcchHHHHHHHhHHHHHHHHHHHH
Confidence            987543    34679999999964 9999999999999999864322    46999999999999999999999999999


Q ss_pred             hChHHHHHHHHHHHHHHHhcCCCcCC--CCchhHHHHHHHHHHhhc------cccCcCCcHHHHHHHHHHHHhcCCCCCC
Q 001555          235 SRWKELGEALILLKVWARQRSSIYVH--DCLNGYLISILLSYLVSL------DKINNSMKALQILRVVLDFIATSKLWNR  306 (1055)
Q Consensus       235 ~~~~~f~dA~~LlkvWl~QRg~~~~~--ggf~gf~~s~lla~Ll~~------~~l~~~~SsyQifr~~l~fLa~~d~~~~  306 (1055)
                      ++||+|+|||+||||||+|||++++.  ||||||+|+|||+||+++      ++++++||||||||++|+|||++||+++
T Consensus       161 ~~~p~f~dA~iLlkvWl~QRg~~~~~~~~Gf~~f~~s~lla~Ll~~g~~~~~~~l~~~mSsyQlFr~~l~fLA~~d~~~~  240 (972)
T PF03813_consen  161 KSSPAFRDACILLKVWLRQRGFGSGISQGGFGGFEWSMLLAYLLQGGGRNGKKKLSKSMSSYQLFRAVLQFLATTDLSKK  240 (972)
T ss_pred             hcCHHHHHHHHHHHHHHhcCCCCcccCCCCcchHHHHHHHHHHHcCCCccCCcccCCCCCHHHHHHHHHHHHhccccccC
Confidence            99999999999999999999999888  999999999999999998      9999999999999999999999999999


Q ss_pred             ceeecCCCCCCCChhHHHhhhhcCCEEEeCCCCceeeccCCCHHHHHHHHHHHHHHHHhhhhcCCCcccccccccc-ccc
Q 001555          307 GLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKI-DFP  385 (1055)
Q Consensus       307 ~i~~~~~~~~~~~~~~~~~f~~~f~vvf~D~sg~lNl~~~~t~~s~~~L~~eA~~tl~~Ld~~~~d~F~~lFl~~~-~~~  385 (1055)
                      |++|+.+++   +.+...+|++.|++||+|++|++|||++||.|+|++||+||+.|+++||+...|+|+++||+++ ++.
T Consensus       241 ~l~~~~~~~---~~~~~~~~~~~~~~vf~D~sg~~Nl~~~ms~~s~~~L~~eA~~tl~lL~~~~~d~F~~lFl~~~~~~~  317 (972)
T PF03813_consen  241 PLFFKSSSD---STESLEEFHSAFDPVFVDPSGGLNLLAKMSPSSYEELQHEAKLTLELLDDSSDDGFDSLFLTKVDPPA  317 (972)
T ss_pred             ceEEecCCC---ccchhhhhhccCCeEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHHHhccccccchhhhhcccCCccc
Confidence            999988754   4456788999999999999999999999999999999999999999999999999999999994 666


Q ss_pred             ccccEEEEeecCCcccccccccCCchhhHH-HHHHHHHHHHHHhhccccceEEEEecCCCCcccccCCCCcCCCCceEEE
Q 001555          386 AKYDYCVRLNLRGHTEVHALGFCLDDECWR-LYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVG  464 (1055)
Q Consensus       386 ~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~lL~~aLgdR~~~i~~~~~~~~~~w~i~~~~~~~~~~~l~vG  464 (1055)
                      .+||++++|...............+...+. .+.++|+++|+||||||+++|++. .++.++|++.+.++.....+++||
T Consensus       318 ~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lL~raLgdR~~~i~v~-~~~~~~w~i~~~~~~~~~~~l~vG  396 (972)
T PF03813_consen  318 LRFDHVLRISPDSLLSSFSPDESLDFLSFSNYLLRKIYRLLKRALGDRAKLIRVL-RPSQPPWSISSKPPKSKPKTLTVG  396 (972)
T ss_pred             ccCCEEEEEcchhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHeEEEe-CCCCCCcccCCCCCCCCCceEEEE
Confidence            999999999322111111111111212222 367899999999999999999997 777899999998776555589999


Q ss_pred             EEecCccccccccccCCCCCCHHHHHHHHhhhcCcccccccCCCCeEEEEecCCCcccccchHHHHHHHHHHHcCCCCCC
Q 001555          465 ISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKE  544 (1055)
Q Consensus       465 l~l~~~~~~~r~vd~GP~ad~~~ea~~FR~FWG~KsELRRFkDGsI~E~VvW~~~~~~~~~I~~~Iv~yiL~~H~~~~~~  544 (1055)
                      ++|| |+||+|+||+||+|||++||++||+|||+||||||||||||+|||||+.  .+|+.||+|||+|||++|++++.+
T Consensus       397 l~ln-~~~~~r~vd~GP~a~d~~ea~~FR~FWG~KsELRRFkDGsI~EsVvWs~--~~~~~I~~~Iv~yiL~~H~~~~~~  473 (972)
T PF03813_consen  397 LILN-PENAFRLVDRGPSAEDKEEAAAFREFWGEKSELRRFKDGSICESVVWSS--AERRLIPEQIVRYILQRHLKIPSD  473 (972)
T ss_pred             EEEc-hhhceeeeeeCcCCcCcHHHHHHHHHhCchhhhcccCCCCEEEEEecCC--CCCCchHHHHHHHHHHHhcCCccc
Confidence            9995 9999999999999998899999999999999999999999999999955  578999999999999999999999


Q ss_pred             cEEEecccchhhhccC----CCCccchHHHHHHHHHHHHHHHhccCCCCeeeeecccCCcccccccCCCCCCCCCccccc
Q 001555          545 NVVQIVDQLDFSLLHG----AKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERH  620 (1055)
Q Consensus       545 ~i~~~~~~~d~~l~~~----~~~~~~~~~~~~~af~~L~k~Lr~L~~LPL~I~~V~p~sp~lRyTsv~pP~p~~~~~~~~  620 (1055)
                      +|++.++++|..+...    ......+++++++||++|+|.||+|+||||+|++|+|+||+|||||||||.|+.      
T Consensus       474 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~af~~L~k~lr~L~~LPL~I~~v~p~sp~lRyts~~pp~p~~------  547 (972)
T PF03813_consen  474 SISFIGDQFDSLLPLPGSGSSPTDEESFQSVMRAFDELEKDLRSLEDLPLSITSVQPASPALRYTSVFPPVPHA------  547 (972)
T ss_pred             eEEeehhhhhhhhcCccccCCCCchHHHHHHHHHHHHHHHHHhcCccCCcceeeeccCCHhhhcCCCCCCCCcc------
Confidence            9999999999876421    222346788999999999999999999999999999999999999999999872      


Q ss_pred             cccccCCCCCCccCceEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccC--C----------eeeecCCceeee
Q 001555          621 TVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWG--M----------TCSATEDDADIF  688 (1055)
Q Consensus       621 ~~~~~~~~~p~~~~pi~vvlqfE~SgkWPddl~AIq~~K~AF~lkia~~L~~~~~--~----------~~~v~~d~lDV~  688 (1055)
                              +|.|++|++|+||||+|||||||++|||++|+||+++|+|.|+++++  +          .+.++.++|||+
T Consensus       548 --------~~~~~~p~~vvl~fE~S~kWPddl~AI~~~K~Af~lkiae~L~~~~~~~~~~~v~~~~~~~~~~~~~~ldV~  619 (972)
T PF03813_consen  548 --------VPRYIPPIEVVLQFESSGKWPDDLEAIQKTKTAFLLKIAEELEKQYGDGIKARVGLDNSLSPIANQAFLDVL  619 (972)
T ss_pred             --------ccCCCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCcceeeecccccccceeccceEEEE
Confidence                    47899999999999999999999999999999999999999997766  4          455556679998


Q ss_pred             c-cceeEEEEEeccchhhHHhhhc--cccc---c--ccc-cchhhhhhhhhHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001555          689 M-SGYAFRLKILHERGLSLVKSEN--GNKA---K--RVY-STDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASH  759 (1055)
Q Consensus       689 ~-~G~~FRl~I~~~rE~~Ll~~~~--~~k~---~--~~~-~~~~~~~~~p~h~~~i~~l~~r~pafs~tvRLaKrWl~sh  759 (1055)
                      + +||+||+||+|+||++||+++.  .+..   .  ... ..+++.++.|+||++|++||+|||+|||||||+|||++||
T Consensus       620 ~~~G~~FRl~I~~~rE~~Ll~~~~~~~~~~~k~~~~~~~~~~~~~~~~~p~h~~~i~~l~~~~p~fs~tvRL~KrW~~sh  699 (972)
T PF03813_consen  620 YPEGYVFRLRIYHDREETLLKRQLKTEDGQLKQEATEALASLERRFIHLPKHTSAIHGLHTRFPSFSPTVRLAKRWLSSH  699 (972)
T ss_pred             ecCccEEEEEEecchhHHHHHHhhcccCcccchhhhHHHHHHHHHHHhhHHHHHHHHHHHhhCCchhHHHHHHHHHHHhc
Confidence            8 9999999999999999999985  2211   1  111 1234455669999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHhcCCCCCCeEEEeCCCCCCHhhHHHHHHHHHHhhhhcc
Q 001555          760 LFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASE  839 (1055)
Q Consensus       760 lLs~hi~eE~vELLva~vFl~p~p~~~P~S~~~GFlRfL~lLs~~DW~~~PLiVd~~~~lt~~~~~~i~~~F~~~R~~~~  839 (1055)
                      ||++||+||+||||||++|++|+||++|+||++||+|||+|||+|||+++|||||+|++++++++++|+++|.++|+   
T Consensus       700 lLs~~i~~E~vELlva~vfl~~~p~~~P~S~~~GFlRfL~lLs~~dW~~~PLiVd~~~~l~~~~~~~i~~~f~~~R~---  776 (972)
T PF03813_consen  700 LLSGHISEEAVELLVASVFLSPAPWSPPSSPQTGFLRFLHLLSTWDWREEPLIVDFNNELTEEDRAEIETNFDAWRK---  776 (972)
T ss_pred             cCcccCCHHHHHHHHHHHhcCCCCCCCCCCHhHHHHHHHHHHHhCCCCcCCEEEECCCCCCHHHHHHHHHHHHHhhc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             ccccCCCCeEEEEecCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccCCCCcEEEEecC
Q 001555          840 ENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWECLFRTPLNNYDAVVLLHR  919 (1055)
Q Consensus       840 ~dp~~~~p~mfIaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~s~~~l~~~~~~~~~~~~~~~~lF~p~l~~YD~vI~L~~  919 (1055)
                      +||++++|+|||||++|++|..||+.+|+++|++||++|||+|+++|+...    ....+|+++|+||+++|||||||++
T Consensus       777 ~dp~~~~p~~~IaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~sl~~l~~~~----~~~~~~~~lF~~~l~~YD~vI~L~~  852 (972)
T PF03813_consen  777 IDPAMNLPAMFIATPYDPEGSLWTRNGPSKVVAKRLTALAKASLKLLEEQG----LSDLDWKSLFRPPLSDYDFVIHLNP  852 (972)
T ss_pred             cCccccCCcEEEEeCCCCCCCEeECCCCCHHHHHHHHHHHHHHHHHHHhcC----CCCCCHHHhcCCCccCCCEEEEecC
Confidence            599999999999999999999999999999999999999999999998432    2367999999999999999999999


Q ss_pred             CCCCCcccccCCccccccccccccCCccccCCCCCcccccCChhhh-hccCCCCCChHHHHHHHHHHHcCCcEEEeecCC
Q 001555          920 DRLPYPRRLLFPSEVNRGRHVARVNASKAFGPFLVPEEMKGSSEEV-KNKMMVDFDPLRCFVGDVEKEYSKKLKLWYDSL  998 (1055)
Q Consensus       920 ~~lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~-~~~~~v~fdPv~~~v~eL~~~yg~~~~FF~d~~  998 (1055)
                      +.+|++.+.+.              ....|      +|+....... ....++|||||++|++||+++|||+++||||++
T Consensus       853 ~~l~~~~~~~~--------------~~~~~------knl~~~~~~~~~~~~~~~fdPv~~~v~eL~~~yg~~~~FF~d~~  912 (972)
T PF03813_consen  853 KKLPRYSSSIA--------------SSSKF------KNLDSKSINDSLPEPVVGFDPVQLFVDELRRAYGDTALFFYDPY  912 (972)
T ss_pred             ccCCchhhhcc--------------ccccc------CCcccccccccCCccccCCChHHHHHHHHHHHcCCcEEEEecCC
Confidence            99998754331              11123      4443321111 112378999999999999999999999999999


Q ss_pred             CCcEEEEEEecCCCCccc----------ccCCCccccCHHHHHHHHHHhccccceEEEec
Q 001555          999 GGDAIGLTWERVGSKKRE----------REEAPEEETDSIGVLKAVGELGKGFVRDIYFL 1048 (1055)
Q Consensus       999 gg~vIg~~w~P~~~~~~~----------~~~~~~v~~N~~ail~ei~~lG~gLV~~I~~~ 1048 (1055)
                      ||++|||+|||++.++++          ..+++.|++|++|||+||++||||||++||++
T Consensus       913 gg~vIg~lW~P~~~~p~~fkv~~~~~~~p~~~~~v~lN~~ail~ei~~lG~~LV~~I~~~  972 (972)
T PF03813_consen  913 GGDVIGVLWNPSAFKPRPFKVSLSYSRKPVSKGKVELNKEAILEEIKRLGGGLVKSIEVK  972 (972)
T ss_pred             CCCEEEEEECCCcCCCCcccccCccceeEcCCCeEEECHHHHHHHHHHHHhhhhheEEcC
Confidence            999999999999854332          12356799999999999999999999999985

In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].

>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]	Back alignment and domain information

>PTZ00418 Poly(A) polymerase; Provisional	Back alignment and domain information

>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]	Back alignment and domain information

>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]	Back alignment and domain information

>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs	Back alignment and domain information

>TIGR03671 cca_archaeal CCA-adding enzyme	Back alignment and domain information

>PRK13300 tRNA CCA-pyrophosphorylase; Provisional	Back alignment and domain information

>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human	Back alignment and domain information

>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins	Back alignment and domain information

>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins	Back alignment and domain information

>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs	Back alignment and domain information

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]	Back alignment and domain information

>PRK13300 tRNA CCA-pyrophosphorylase; Provisional	Back alignment and domain information

>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]	Back alignment and domain information

>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core	Back alignment and domain information

>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO)	Back alignment and domain information

>PTZ00418 Poly(A) polymerase; Provisional	Back alignment and domain information

>TIGR03671 cca_archaeal CCA-adding enzyme	Back alignment and domain information

>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme	Back alignment and domain information

>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases	Back alignment and domain information

>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO)	Back alignment and domain information

>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat	Back alignment and domain information

>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1055
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2hhp_A		530	Poly(A) polymerase; template-independent RNA polym	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 109/658 (16%), Positives = 188/658 (28%), Gaps = 208/658 (31%)

Query: 99  VNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPS--------FDKVEWSA 150
           V  D FV    +C   +D        +          H+  S          F  +    
Sbjct: 24  VFEDAFVD-NFDCKDVQDMPKSILSKEEI-------DHIIMSKDAVSGTLRLFWTLL--- 72

Query: 151 MQNEARKPVLVVYPAVKSVEAP--GFFVRII------PTAASLFNIAKLNLKRNNVRAFN 202
                 K   +V   V+ V      F +  I      P+  +   I + +   N+ + F 
Sbjct: 73  -----SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 203 QDGIPRATPKYNSSILEDMFLEDN-AEYVE--------KTISRWKEL-GEALILLKVWAR 252
           +  + R  P      L    LE   A+ V         KT      +  +          
Sbjct: 128 KYNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTW-----VALDVC-------- 171

Query: 253 QRSSIYVHDCLNG--YLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYF 310
              S  V   ++   + ++     L + +     ++ LQ L   +D   TS+  +     
Sbjct: 172 --LSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDH---SS 221

Query: 311 PPKGQIGVSKEEKL------QYKEAFPVV--ICDPSAQVNLAFRMTSVGFCELQDEAAST 362
             K +I   + E         Y+    V+  + +  A  N AF                 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WN-AF----------------N 263

Query: 363 LQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVH 422
           L C          +  LT           V   L   T  H     LD     L   +V 
Sbjct: 264 LSC----------KILLT------TRFKQVTDFLSAATTTH---ISLDHHSMTLTPDEVK 304

Query: 423 SLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSL------------ 470
           SLL        K +    ++ P E        VL   P  + I   S+            
Sbjct: 305 SLL-------LKYLDCRPQDLPRE--------VLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 471 ---EKLFRIVDIGPNAENKEEALRFRK-FWGEKAELRRFKDGT-IAEST---VW-ESEQW 521
              +KL  I++   N     E   +RK F      L  F     I       +W +  + 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAE---YRKMFD----RLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 522 TRHLILKGIIEYVLL-RHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSK 580
              +++  + +Y L+ +     KE+ + I   +   L    ++  +   S+++ + +   
Sbjct: 403 DVMVVVNKLHKYSLVEKQ---PKESTISIPS-IYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 581 RL-------------------HLIEDIPLKISSVQP---LDSAFRFTSVFPPEPHPLANE 618
                                HL      +  ++     LD  FRF          L  +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRF----------LEQK 506

Query: 619 -RHTVSRLHKLTPSCIQPLEVMIQLEG-----SGNWPMDHVAIEKTKSAFLIKIGESL 670
            RH  +  +         L  + QL+        N P     +      FL KI E+L
Sbjct: 507 IRHDSTAWNASGSI----LNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENL 559

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1055
d2q66a1		150	Poly(A) polymerase, PAP, middle domain {Baker's ye	99.46
d1q79a1		150	Poly(A) polymerase, PAP, middle domain {Cow (Bos t	99.42
d2b4va1		183	RNA editing terminal uridyl transferase 2, TUTase	98.55
d1q79a1		150	Poly(A) polymerase, PAP, middle domain {Cow (Bos t	96.67
d2q66a1		150	Poly(A) polymerase, PAP, middle domain {Baker's ye	96.56
d1r89a2		142	tRNA nucleotidyltransferase, N-terminal domain {Ar	96.08
d1q79a2		196	Poly(A) polymerase, PAP, N-terminal domain {Cow (B	93.55
d1r89a1		115	tRNA nucleotidyltransferase, second domain {Archae	92.97
d2q66a2		197	Poly(A) polymerase, PAP, N-terminal domain {Baker'	92.47
d1px5a1		146	2'-5'-oligoadenylate synthetase 1, OAS1, second do	90.54

>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=1.9e-12  Score=91.82  Aligned_cols=139  Identities=13%  Similarity=0.133  Sum_probs=111.7

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf             938899999999999974277767-8884269999999999410354867749999999999983388878734306899
Q 001555          236 RWKELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKG  314 (1055)
Q Consensus       236 ~~~~f~dA~~LlkvWl~QRg~~~~-~~gf~~f~~s~ll~~L~~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~  314 (1055)
                      +..+|+.|++.+|.|+++||.+.+ .|.+||-.|++|+|.+||   +.+..|+-+++..++...|++||- +|+.++...
T Consensus         2 n~~~Fr~alR~IK~WAk~RGIYsn~~GylGGI~waILvArvCq---l~p~a~~~~ll~~FF~~ys~W~Wp-~PV~l~~~~   77 (150)
T d2q66a1           2 KPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ---LYPNACSAVILNRFFIILSEWNWP-QPVILKPIE   77 (150)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHHCCTT-SCEESSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHCCCCC-CCEECCCCC
T ss_conf             7789999999999999980663021236378999999999998---679998899999999998679999-954505743


Q ss_pred             CCCC------CHHHHHHHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCC
Q ss_conf             9999------846787666149988848998425234799888999999999999964203--8786312223
Q 001555          315 QIGV------SKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFL  379 (1055)
Q Consensus       315 ~~~~------~~~~~~~f~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~Ld~~--~~d~F~~lFl  379 (1055)
                      +...      +..+..+-.+.+|++ .-..-.+|.+.++|.++++.|+.|-+++.+++++.  +...++.+|-
T Consensus        78 ~~~~~~~~w~p~~~~~d~~~~MpIi-TPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~~W~~Lfe  149 (150)
T d2q66a1          78 DGPLQVRVWNPKIYAQDRSHRMPVI-TPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFE  149 (150)
T ss_dssp             CCCTTSCCCCTTTCHHHHTCSSCEE-CSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             4555677899877987745554441-37787421101045999999999999999999999838998999952

PyMOL of d2q66a1

>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure