Citrus Sinensis ID: 001570

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050-

MYWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSLRGITKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETLTVP

cccccccccccccccccccHHHcccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccEEEEEEcccccccccccccccEEEEECcccccccccccccccccccccccccccccccccEEEEEEEccccCEEEEccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHcccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccEEEEHHHHHHHHcccccccccccccccHHHHHcccccHHHHccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccEEEEcccccEEEccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHHHcccccEEEccccccccccccccccccEEEEEEEECccCEEEEEEccccccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc

*******NAVVSFPKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSL****************ILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQG*****SRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS*P******QLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNC******************VYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVE*LTV*

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
DNA mismatch repair protein MSH1, mitochondrial	DNA mismatch repair protein specifically involved in maintenance of mitochondrial genome configuration by controlling specific rearranged portion. Functions by suppressing asymmetric recombination at some repeat pairs.	confident	Q84LK0

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WB9, chain A
Confidence level:confident
Coverage over the Query: 654-802,814-935
View the alignment between query and template
View the model in PyMOL

Template: 2O8B, chain A
Confidence level:confident
Coverage over the Query: 656-930,943-955
View the alignment between query and template
View the model in PyMOL

Template: 1WB9, chain A
Confidence level:probable
Coverage over the Query: 654-802,814-935
View the alignment between query and template
View the model in PyMOL

Template: 3LVG, chain D
Confidence level:probable
Coverage over the Query: 600-678
View the alignment between query and template
View the model in PyMOL