Citrus Sinensis ID: 001570

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050-

MYWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSLRGITKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETLTVP

cccccccccccccccccccHHHccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHcccEEEEEEcccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccEEEEHHHHHHHHcccccccccccccccHHHHHcccccHHHHccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccEEEEcccccEEEccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHHHcccccEEEccccccccccccccccccEEEEEEEEEccEEEEEEEccccccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc

ccEEEEEEEEEEccccHHHHHHHcccccccccccccccEEEcccccEEEEccccccccccEEEccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHccccEEEccccccccEEEEEEEccccccccccccEEEEEcccccEEEEEEHHHHcccEHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEccccccccEEEccccHHHHHHHHHHHHHcccccEEEEEEEEccccccccEEEccHHHccccccccccHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHcccEEcHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccEEEEEEcccEEEEcccEEEcEEEEEcccHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccEEEEEcccccEEEEccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccHHHcEEccEcEEEEEcccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEHccHHHHHHcHHHccccEEEEEEEEEccccEEEEEEEccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHcccHccccccccHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccEEEcc

MYWLATRNAvvsfpklrslssvflrsplrnyspfrpstlLLTRRFGqaycfkdrrslrgitksskkvkgsndnilsdkdlSHIMWWQERLqmcrkpstlhlvnrlkysnllgldvnlkngslkegtlNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEyaglnpfgglrpesipkagcpvvnlrqtlddltrngysVCIVEevqgptqarsrksrfisghahpgspyvfglvgidhdldfpepmpvigvsrsakGYCIISILETMktysledglteDALVTKLRTSRYHHLFLHTslrqntsgtsrwgeygegglLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTvsyenrprplhlgtatqigaiptegipCLLKvllpsncsglpilyvrdlllnppayeIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMdptwvatglkiDFETLVEECRLASVRIGEMisldgesdqkicsydnipsefFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIkattaplggpkgeiLYAREHEAvwfkgkkfrptvwastpgeeqikqlkpavdskgrkvgeEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHvsegrrrkwvfpaLKDIeldganclkmnglspywfdaaegsavhntVDMQSLFlltgpngggksSLLRSICAASLLGICglmvpaesasipyFDAIMLHMksydspadgkssFQVEMSEIRSIVTATTSRSLVLIDEICrgtetakgtciagsiietldnigclgiVSTHLHGIFSLPLKIKNAAYKAMgteyldgqtvptwkLVDGICRESLAFEtakregvpeTIIQRAEDLYIACGVNCVMIaareqpppsiigASCVYVmlrpdkklyigqtddldgrirahrgkegmqsASFLYFVVPGKSIACQIETLLINQLYSQGFLLaniadgkhrnfgtssrpvetltvp

mywlatrnavvsfpklrslssvflrsplrnyspfrpstllltrRFGQaycfkdrrslrgitksskkvkgsndnilsdkdLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVeevqgptqarsRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETmktysledGLTEDALVTKLRTSRYHHlflhtslrqntsgtsRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMisldgesdqkICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKattaplggpKGEILYAREHEAVWFKGKKFRPTVwastpgeeqikqlkpavdskgrkvGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFahvsegrrrkWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIvtattsrslvLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAfetakregvpeTIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGkhrnfgtssrpvetltvp

MYWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSLRGITKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRwgeygeggllwgeCIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETLTVP

*YWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSL****************ILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEV*************I*GHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS********************VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS***************SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADG******************

*******NAVVSFPKLRSLSSVFLRSPLR***PFRPSTLLLTRR**********************************DLSHIMWWQERLQMCRKPSTLHLVNRLKYSN*****************LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG*****SIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQG*****SRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDG*********DNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWA**P******QLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYI*************************************************************LYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVE*LTV*

********AVVSFPKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSLRGITK********NDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQ**********RFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTS**********

MYWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSLRGITKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNC******************VYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETLTVP

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1051	2.2.26 [Sep-21-2011]
Q84LK0		1118	DNA mismatch repair prote	yes	no	0.986	0.927	0.723	0.0
A5UZK7		1085	DNA mismatch repair prote	yes	no	0.339	0.329	0.277	3e-29
Q045Q5		857	DNA mismatch repair prote	yes	no	0.217	0.267	0.334	3e-28
A7NPT5		1088	DNA mismatch repair prote	yes	no	0.272	0.262	0.287	3e-28
P61666		905	DNA mismatch repair prote	yes	no	0.272	0.316	0.337	3e-28
A1VDD9		905	DNA mismatch repair prote	yes	no	0.272	0.316	0.337	4e-28
Q30ZX3		904	DNA mismatch repair prote	yes	no	0.273	0.317	0.315	4e-28
Q9KAC0		865	DNA mismatch repair prote	yes	no	0.219	0.267	0.351	4e-28
A6W1Q6		883	DNA mismatch repair prote	yes	no	0.219	0.261	0.344	9e-28
P61668		857	DNA mismatch repair prote	yes	no	0.217	0.267	0.330	1e-27

>sp\|Q84LK0\|MSH1_ARATH DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana GN=MSH1 PE=1 SV=1	Back alignment and function desciption

 Score = 1649 bits (4270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 804/1112 (72%), Positives = 914/1112 (82%), Gaps = 75/1112 (6%)

Query: 1    MYWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPST-LLLTRRFGQAY-CFKDRRSLR 58
            M+W+ATRNAVVSFPK R     F RS  R YS  +PS+ +LL RR+ +   C +D +SL+
Sbjct: 1    MHWIATRNAVVSFPKWR----FFFRSSYRTYSSLKPSSPILLNRRYSEGISCLRDGKSLK 56

Query: 59   GITKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLK 118
             IT +SKKVK S+D +L+DKDLSH++WW+ERLQ C+KPSTL L+ RL Y+NLLGLD +L+
Sbjct: 57   RITTASKKVKTSSD-VLTDKDLSHLVWWKERLQTCKKPSTLQLIERLMYTNLLGLDPSLR 115

Query: 119  NGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESI 178
            NGSLK+G LNWEMLQFKS+FPREVLLCRVG+FYEAIGIDACILVEYAGLNPFGGLR +SI
Sbjct: 116  NGSLKDGNLNWEMLQFKSRFPREVLLCRVGEFYEAIGIDACILVEYAGLNPFGGLRSDSI 175

Query: 179  PKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVG 238
            PKAGCP++NLRQTLDDLTRNGYSVCIVEEVQGPT ARSRK RFISGHAHPGSPYV+GLVG
Sbjct: 176  PKAGCPIMNLRQTLDDLTRNGYSVCIVEEVQGPTPARSRKGRFISGHAHPGSPYVYGLVG 235

Query: 239  IDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFL 298
            +DHDLDFP+PMPV+G+SRSA+GYC+ISI ETMK YSL+DGLTE+ALVTKLRT R HHLFL
Sbjct: 236  VDHDLDFPDPMPVVGISRSARGYCMISIFETMKAYSLDDGLTEEALVTKLRTRRCHHLFL 295

Query: 299  HTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFR 358
            H SLR N SGT RWGE+GEGGLLWGEC +R+FEWFEGD + ELL +VK++YGL++EV+FR
Sbjct: 296  HASLRHNASGTCRWGEFGEGGLLWGECSSRNFEWFEGDTLSELLSRVKDVYGLDDEVSFR 355

Query: 359  NVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYE 418
            NV V  +NRPRPLHLGTATQIGA+PTEGIPCLLKVLLPS CSGLP LYVRDLLLNPPAY+
Sbjct: 356  NVNVPSKNRPRPLHLGTATQIGALPTEGIPCLLKVLLPSTCSGLPSLYVRDLLLNPPAYD 415

Query: 419  IASTIQAICKLMSKVTCSIPEFTC-----LVKLLELREANHIEFCRIKNVLDEILHMYGN 473
            IA  IQ  CKLMS VTCSIPEFTC     LVKLLE REAN+IEFCRIKNVLD++LHM+ +
Sbjct: 416  IALKIQETCKLMSTVTCSIPEFTCVSSAKLVKLLEQREANYIEFCRIKNVLDDVLHMHRH 475

Query: 474  SELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLD-GESDQKICSYDNIP 532
            +EL EIL+LLMDPTWVATGLKIDF+T V EC  AS  IGEMISLD  ES Q +   DN+P
Sbjct: 476  AELVEILKLLMDPTWVATGLKIDFDTFVNECHWASDTIGEMISLDENESHQNVSKCDNVP 535

Query: 533  SEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPK 592
            +EFF DMES+W+GRVK IHIE EI +VE +AEALSLAV EDF PIISRIKATTA LGGPK
Sbjct: 536  NEFFYDMESSWRGRVKGIHIEEEITQVEKSAEALSLAVAEDFHPIISRIKATTASLGGPK 595

Query: 593  GEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEA 652
            GEI YAREHE+VWFKGK+F P++WA T GE+QIKQLKPA+DSKG+KVGEEWF+T KVE A
Sbjct: 596  GEIAYAREHESVWFKGKRFTPSIWAGTAGEDQIKQLKPALDSKGKKVGEEWFTTPKVEIA 655

Query: 653  LERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVF 712
            L RYHEA   AKA+VLELLR LS +LQTKIN+LVFASMLLVI KALF+H  EGRRRKWVF
Sbjct: 656  LVRYHEASENAKARVLELLRELSVKLQTKINVLVFASMLLVISKALFSHACEGRRRKWVF 715

Query: 713  PALKDIE-------LDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKS 765
            P L           LDGA+ +K+ GLSPYWFD + G+AVHNTVDMQSLFLLTGPNGGGKS
Sbjct: 716  PTLVGFSLDEGAKPLDGASRMKLTGLSPYWFDVSSGTAVHNTVDMQSLFLLTGPNGGGKS 775

Query: 766  SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 825
            SLLRSICAA+LLGI GLMVPAESA IP+FD+IMLHMKSYDSP DGKSSFQVEMSEIRSIV
Sbjct: 776  SLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIV 835

Query: 826  TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 885
            +  TSRSLVLIDEICRGTETAKGTCIAGS++E+LD  GCLGIVSTHLHGIFSLPL  KN 
Sbjct: 836  SQATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCLGIVSTHLHGIFSLPLTAKNI 895

Query: 886  AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIA------- 938
             YKAMG E ++GQT PTWKL DG+CRESLAFETAKREGVPE++IQRAE LY++       
Sbjct: 896  TYKAMGAENVEGQTKPTWKLTDGVCRESLAFETAKREGVPESVIQRAEALYLSVYAKDAS 955

Query: 939  ----------------------------------------CG--------VNCVMIAARE 950
                                                    CG        + C+ I ARE
Sbjct: 956  AEVVKPDQIITSSNNDQQIQKPVSSERSLEKDLAKAIVKICGKKMIEPEAIECLSIGARE 1015

Query: 951  QPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIAC 1010
             PPPS +G+SCVYVM RPDK+LYIGQTDDL+GRIRAHR KEG+Q +SFLY +V GKS+AC
Sbjct: 1016 LPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMAC 1075

Query: 1011 QIETLLINQLYSQGFLLANIADGKHRNFGTSS 1042
            Q+ETLLINQL+ QG+ LAN+ADGKHRNFGTSS
Sbjct: 1076 QLETLLINQLHEQGYSLANLADGKHRNFGTSS 1107

DNA mismatch repair protein specifically involved in maintenance of mitochondrial genome configuration by controlling specific rearranged portion. Functions by suppressing asymmetric recombination at some repeat pairs.
Arabidopsis thaliana (taxid: 3702)

>sp\|A5UZK7\|MUTS_ROSS1 DNA mismatch repair protein MutS OS=Roseiflexus sp. (strain RS-1) GN=mutS PE=3 SV=1	Back alignment and function description

>sp\|Q045Q5\|MUTS_LACGA DNA mismatch repair protein MutS OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=mutS PE=3 SV=1	Back alignment and function description

>sp\|A7NPT5\|MUTS_ROSCS DNA mismatch repair protein MutS OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=mutS PE=3 SV=1	Back alignment and function description

>sp\|P61666\|MUTS_DESVH DNA mismatch repair protein MutS OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=mutS PE=3 SV=1	Back alignment and function description

>sp\|A1VDD9\|MUTS_DESVV DNA mismatch repair protein MutS OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=mutS PE=3 SV=1	Back alignment and function description

>sp\|Q30ZX3\|MUTS_DESDG DNA mismatch repair protein MutS OS=Desulfovibrio desulfuricans (strain G20) GN=mutS PE=3 SV=1	Back alignment and function description

>sp\|Q9KAC0\|MUTS_BACHD DNA mismatch repair protein MutS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=mutS PE=3 SV=1	Back alignment and function description

>sp\|A6W1Q6\|MUTS_MARMS DNA mismatch repair protein MutS OS=Marinomonas sp. (strain MWYL1) GN=mutS PE=3 SV=1	Back alignment and function description

>sp\|P61668\|MUTS_LACJO DNA mismatch repair protein MutS OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=mutS PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1051
296083740		1114	unnamed protein product [Vitis vinifera]	0.996	0.939	0.752	0.0
297835516		1115	hypothetical protein ARALYDRAFT_479946 [	0.983	0.927	0.729	0.0
42565155		1118	MUTL protein-like protein 1 [Arabidopsis	0.986	0.927	0.723	0.0
225433289		1144	PREDICTED: uncharacterized protein LOC10	0.889	0.817	0.798	0.0
224107525		1130	predicted protein [Populus trichocarpa]	0.886	0.824	0.798	0.0
255574867		937	ATP binding protein, putative [Ricinus c	0.878	0.985	0.810	0.0
11994694		1016	unnamed protein product [Arabidopsis tha	0.890	0.921	0.740	0.0
61696673		1124	DNA mismatch repair protein [Solanum lyc	0.882	0.824	0.740	0.0
449433221		1122	PREDICTED: DNA mismatch repair protein M	0.850	0.796	0.759	0.0
351720948		1130	DNA mismatch repair protein [Glycine max	0.887	0.825	0.723	0.0

>gi\|296083740\|emb\|CBI23729.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1712 bits (4433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 839/1115 (75%), Positives = 938/1115 (84%), Gaps = 68/1115 (6%)

Query: 1    MYWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSLRGI 60
            MYWL+T+N VVSFP+  SL+ + LRSP   Y+ FR STLLL ++F ++ C  +RR L+G 
Sbjct: 1    MYWLSTKNVVVSFPRFYSLA-LLLRSPACKYTSFRSSTLLL-QQFEKSRCLNERRVLKGA 58

Query: 61   TKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNG 120
             + +K V G   N L +KDLSHIMWW+ER+QMC+KPST+HLV RL YSNLLG+D NLKNG
Sbjct: 59   GRMTKNVIGLQ-NELDEKDLSHIMWWKERMQMCKKPSTVHLVKRLIYSNLLGVDPNLKNG 117

Query: 121  SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 180
            +LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR +SIP+
Sbjct: 118  NLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSIPR 177

Query: 181  AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 240
            AGCPV+NLRQTLDDLTR+GYSVCIVEEVQGPTQARSRK RFISGHAHPGSPYVFGLVG+D
Sbjct: 178  AGCPVMNLRQTLDDLTRSGYSVCIVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVD 237

Query: 241  HDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHT 300
            HDLDFPEPMPV+G+SRSAKGY II +LETMKT+S+EDGLTE+ALVTKLRT  YHHL LHT
Sbjct: 238  HDLDFPEPMPVVGISRSAKGYSIILVLETMKTFSVEDGLTEEALVTKLRTCHYHHLLLHT 297

Query: 301  SLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNV 360
            SLR+N+SGT RWGE+GEGGLLWGEC ARHFEWFEGDPV +LL KVKELYG +++VTFRNV
Sbjct: 298  SLRRNSSGTCRWGEFGEGGLLWGECSARHFEWFEGDPVSQLLFKVKELYGFDDQVTFRNV 357

Query: 361  TVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIA 420
            TVS E RPR LHLGTATQIGAIPTEGIPCLLKVLLPSNC+GLP+LYVRDLLLNPPAYEIA
Sbjct: 358  TVSSEKRPRSLHLGTATQIGAIPTEGIPCLLKVLLPSNCTGLPLLYVRDLLLNPPAYEIA 417

Query: 421  STIQAICKLMSKVTCSIPEFTC-----LVKLLELREANHIEFCRIKNVLDEILHMYGNSE 475
            S IQA C+LM+ VTCSIPEFTC     LVKLLELREANHIEFCRIK+VLDEIL M+ NS+
Sbjct: 418  SIIQATCRLMNNVTCSIPEFTCVSPAKLVKLLELREANHIEFCRIKSVLDEILQMHRNSD 477

Query: 476  LNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEF 535
            LN+IL+LLMDPTWVATGLKIDF+TLV EC   S RIG+MI LDGE+DQKI  +  IP++F
Sbjct: 478  LNKILKLLMDPTWVATGLKIDFDTLVNECEWISARIGKMIFLDGENDQKISYHPIIPNDF 537

Query: 536  FEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEI 595
            FEDMES WKGRVKRIH+E   AEVE AAEALSLA++EDFLPIISRIKATTAPLGGPKGE+
Sbjct: 538  FEDMESPWKGRVKRIHVEEAFAEVERAAEALSLAISEDFLPIISRIKATTAPLGGPKGEV 597

Query: 596  LYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALER 655
            +YAREHEAVWFKGK+F P  WA TPGEEQIKQL+PA+DSKGRKVG EWF+T+KVE+AL R
Sbjct: 598  VYAREHEAVWFKGKRFAPVAWAGTPGEEQIKQLRPAIDSKGRKVGLEWFTTVKVEDALTR 657

Query: 656  YHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL 715
            YHEAG KAKA+VLELLRGLS+ELQTKINIL+FASMLLVI KALFAHVSEGRRRKWVFP+L
Sbjct: 658  YHEAGDKAKARVLELLRGLSAELQTKINILIFASMLLVIAKALFAHVSEGRRRKWVFPSL 717

Query: 716  ------KDIE-LDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLL 768
                  KD+E LDGAN +K+ GLSPYW D A+GSAVHNTVDM+SLFLLTGPNGGGKSSLL
Sbjct: 718  VELHRSKDMEPLDGANWMKITGLSPYWLDVAQGSAVHNTVDMKSLFLLTGPNGGGKSSLL 777

Query: 769  RSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 828
            RSICAA+LLGICG MVPAESA IP+FD+IMLHMKSYDSPADGKSSFQ+EMSE+RSI+T  
Sbjct: 778  RSICAAALLGICGFMVPAESALIPHFDSIMLHMKSYDSPADGKSSFQIEMSEMRSIITGA 837

Query: 829  TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 888
            TSRSLVLIDEICRGTETAKGTCIAGSI+ETLD IGCLGIVSTHLHGIF+L L  KNA  K
Sbjct: 838  TSRSLVLIDEICRGTETAKGTCIAGSIVETLDKIGCLGIVSTHLHGIFTLGLNTKNAICK 897

Query: 889  AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLY--------IACG 940
            AMGTEY+DG+T PTWKL+DGICRESLAFETA++EG+PETII+RAE+LY        I  G
Sbjct: 898  AMGTEYVDGKTKPTWKLIDGICRESLAFETAQKEGIPETIIRRAEELYLSIHSKDLITGG 957

Query: 941  VNC---------------------------------------------VMIAAREQPPPS 955
              C                                             V I   EQPPPS
Sbjct: 958  TICPKIESTNEMEVLHKKVESAVTIVCQKKLKELYKQKNTSKLPEINCVAILPGEQPPPS 1017

Query: 956  IIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETL 1015
             IGAS VYV+   DKKLY+G+TDDL+GR+RAHR KEGMQ ASFLYFVVPGKS+ACQ+ETL
Sbjct: 1018 TIGASSVYVLFSTDKKLYVGETDDLEGRVRAHRSKEGMQKASFLYFVVPGKSLACQLETL 1077

Query: 1016 LINQLYSQGFLLANIADGKHRNFGTSSRPVETLTV 1050
            LINQL  QGF L N ADGKHRNFGT    VE +T+
Sbjct: 1078 LINQLPVQGFQLVNRADGKHRNFGTLDHSVEVVTL 1112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297835516\|ref\|XP_002885640.1\| hypothetical protein ARALYDRAFT_479946 [Arabidopsis lyrata subsp. lyrata] gi\|297331480\|gb\|EFH61899.1\| hypothetical protein ARALYDRAFT_479946 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|42565155|ref|NP_189075.2| MUTL protein-like protein 1 [Arabidopsis thaliana] gi|75297828|sp|Q84LK0.1|MSH1_ARATH RecName: Full=DNA mismatch repair protein MSH1, mitochondrial; Short=AtMSH1; AltName: Full=MutS protein homolog 1; AltName: Full=Protein CHLOROPLAST MUTATOR; Flags: Precursor gi|30313805|gb|AAO49798.1| DNA mismatch repair protein [Arabidopsis thaliana] gi|332643368|gb|AEE76889.1| MUTL protein-like protein 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|225433289\|ref\|XP_002282256.1\| PREDICTED: uncharacterized protein LOC100266612 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224107525\|ref\|XP_002314510.1\| predicted protein [Populus trichocarpa] gi\|222863550\|gb\|EEF00681.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255574867\|ref\|XP_002528340.1\| ATP binding protein, putative [Ricinus communis] gi\|223532208\|gb\|EEF34012.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|11994694\|dbj\|BAB02932.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|61696673\|gb\|AAX53097.1\| DNA mismatch repair protein [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|449433221\|ref\|XP_004134396.1\| PREDICTED: DNA mismatch repair protein MSH1, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|351720948\|ref\|NP_001238217.1\| DNA mismatch repair protein [Glycine max] gi\|61696669\|gb\|AAX53095.1\| DNA mismatch repair protein [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1051
TAIR\|locus:2087193		1118	MSH1 "AT3G24320" [Arabidopsis	0.906	0.852	0.738	0.0
UNIPROTKB\|Q0JBW2		1132	Os04g0507000 "Os04g0507000 pro	0.912	0.847	0.640	0.0
UNIPROTKB\|P74926		793	mutS "DNA mismatch repair prot	0.282	0.374	0.297	8.9e-31
TAIR\|locus:2132233		1324	MSH6 "AT4G02070" [Arabidopsis	0.280	0.222	0.331	1.3e-29
TIGR_CMR\|NSE_0335		815	NSE_0335 "DNA mismatch repair	0.267	0.344	0.318	2.2e-29
TIGR_CMR\|ECH_0824		804	ECH_0824 "DNA mismatch repair	0.185	0.242	0.361	6.4e-28
UNIPROTKB\|Q8TTB4		900	mutS "DNA mismatch repair prot	0.196	0.228	0.348	1.9e-27
DICTYBASE\|DDB_G0275999		898	msh1 "mutS homolog" [Dictyoste	0.178	0.209	0.338	1.1e-26
UNIPROTKB\|Q8A334		862	mutS "DNA mismatch repair prot	0.279	0.341	0.308	8.2e-26
UNIPROTKB\|Q7NLT8		890	mutS "DNA mismatch repair prot	0.171	0.202	0.359	1.7e-25

TAIR\|locus:2087193 MSH1 "AT3G24320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3707 (1310.0 bits), Expect = 0., Sum P(2) = 0.
 Identities = 720/975 (73%), Positives = 817/975 (83%)

Query:     1 MYWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPST-LLLTRRFGQAY-CFKDRRSLR 58
             M+W+ATRNAVVSFPK R     F RS  R YS  +PS+ +LL RR+ +   C +D +SL+
Sbjct:     1 MHWIATRNAVVSFPKWR----FFFRSSYRTYSSLKPSSPILLNRRYSEGISCLRDGKSLK 56

Query:    59 GITKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLK 118
              IT +SKKVK S+D +L+DKDLSH++WW+ERLQ C+KPSTL L+ RL Y+NLLGLD +L+
Sbjct:    57 RITTASKKVKTSSD-VLTDKDLSHLVWWKERLQTCKKPSTLQLIERLMYTNLLGLDPSLR 115

Query:   119 NGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESI 178
             NGSLK+G LNWEMLQFKS+FPREVLLCRVG+FYEAIGIDACILVEYAGLNPFGGLR +SI
Sbjct:   116 NGSLKDGNLNWEMLQFKSRFPREVLLCRVGEFYEAIGIDACILVEYAGLNPFGGLRSDSI 175

Query:   179 PKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVG 238
             PKAGCP++NLRQTLDDLTRNGYSVCIVEEVQGPT ARSRK RFISGHAHPGSPYV+GLVG
Sbjct:   176 PKAGCPIMNLRQTLDDLTRNGYSVCIVEEVQGPTPARSRKGRFISGHAHPGSPYVYGLVG 235

Query:   239 IDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFL 298
             +DHDLDFP+PMPV+G+SRSA+GYC+ISI ETMK YSL+DGLTE+ALVTKLRT R HHLFL
Sbjct:   236 VDHDLDFPDPMPVVGISRSARGYCMISIFETMKAYSLDDGLTEEALVTKLRTRRCHHLFL 295

Query:   299 HTSLRQNTSGTSRXXXXXXXXXXXXXCIARHFEWFEGDPVIELLLKVKELYGLENEVTFR 358
             H SLR N SGT R             C +R+FEWFEGD + ELL +VK++YGL++EV+FR
Sbjct:   296 HASLRHNASGTCRWGEFGEGGLLWGECSSRNFEWFEGDTLSELLSRVKDVYGLDDEVSFR 355

Query:   359 NVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYE 418
             NV V  +NRPRPLHLGTATQIGA+PTEGIPCLLKVLLPS CSGLP LYVRDLLLNPPAY+
Sbjct:   356 NVNVPSKNRPRPLHLGTATQIGALPTEGIPCLLKVLLPSTCSGLPSLYVRDLLLNPPAYD 415

Query:   419 IASTIQAICKLMSKVTCSIPEFTC-----LVKLLELREANHIEFCRIKNVLDEILHMYGN 473
             IA  IQ  CKLMS VTCSIPEFTC     LVKLLE REAN+IEFCRIKNVLD++LHM+ +
Sbjct:   416 IALKIQETCKLMSTVTCSIPEFTCVSSAKLVKLLEQREANYIEFCRIKNVLDDVLHMHRH 475

Query:   474 SELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLD-GESDQKICSYDNIP 532
             +EL EIL+LLMDPTWVATGLKIDF+T V EC  AS  IGEMISLD  ES Q +   DN+P
Sbjct:   476 AELVEILKLLMDPTWVATGLKIDFDTFVNECHWASDTIGEMISLDENESHQNVSKCDNVP 535

Query:   533 SEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPK 592
             +EFF DMES+W+GRVK IHIE EI +VE +AEALSLAV EDF PIISRIKATTA LGGPK
Sbjct:   536 NEFFYDMESSWRGRVKGIHIEEEITQVEKSAEALSLAVAEDFHPIISRIKATTASLGGPK 595

Query:   593 GEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEA 652
             GEI YAREHE+VWFKGK+F P++WA T GE+QIKQLKPA+DSKG+KVGEEWF+T KVE A
Sbjct:   596 GEIAYAREHESVWFKGKRFTPSIWAGTAGEDQIKQLKPALDSKGKKVGEEWFTTPKVEIA 655

Query:   653 LERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVF 712
             L RYHEA   AKA+VLELLR LS +LQTKIN+LVFASMLLVI KALF+H  EGRRRKWVF
Sbjct:   656 LVRYHEASENAKARVLELLRELSVKLQTKINVLVFASMLLVISKALFSHACEGRRRKWVF 715

Query:   713 PALKDIELD-------GANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKS 765
             P L    LD       GA+ +K+ GLSPYWFD + G+AVHNTVDMQSLFLLTGPNGGGKS
Sbjct:   716 PTLVGFSLDEGAKPLDGASRMKLTGLSPYWFDVSSGTAVHNTVDMQSLFLLTGPNGGGKS 775

Query:   766 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 825
             SLLRSICAA+LLGI GLMVPAESA IP+FD+IMLHMKSYDSP DGKSSFQVEMSEIRSIV
Sbjct:   776 SLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIV 835

Query:   826 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 885
             +  TSRSLVLIDEICRGTETAKGTCIAGS++E+LD  GCLGIVSTHLHGIFSLPL  KN 
Sbjct:   836 SQATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCLGIVSTHLHGIFSLPLTAKNI 895

Query:   886 AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVM 945
              YKAMG E ++GQT PTWKL DG+CRESLAFETAKREGVPE++IQRAE LY++  V    
Sbjct:   896 TYKAMGAENVEGQTKPTWKLTDGVCRESLAFETAKREGVPESVIQRAEALYLS--VYAKD 953

Query:   946 IAAREQPPPSIIGAS 960
              +A    P  II +S
Sbjct:   954 ASAEVVKPDQIITSS 968

GO:0000228 "nuclear chromosome" evidence=IBA

GO:0000400 "four-way junction DNA binding" evidence=IBA

GO:0000710 "meiotic mismatch repair" evidence=IBA

GO:0003684 "damaged DNA binding" evidence=ISS;IBA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006298 "mismatch repair" evidence=ISS

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0008094 "DNA-dependent ATPase activity" evidence=IBA

GO:0009411 "response to UV" evidence=IBA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IBA

GO:0032138 "single base insertion or deletion binding" evidence=IBA

GO:0032301 "MutSalpha complex" evidence=IBA

GO:0043570 "maintenance of DNA repeat elements" evidence=IBA

GO:0045910 "negative regulation of DNA recombination" evidence=IBA

GO:0032042 "mitochondrial DNA metabolic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0000002 "mitochondrial genome maintenance" evidence=IGI;IMP

GO:0009408 "response to heat" evidence=IGI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

UNIPROTKB\|Q0JBW2 Os04g0507000 "Os04g0507000 protein" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|P74926 mutS "DNA mismatch repair protein MutS" [Thermotoga maritima MSB8 (taxid:243274)]	Back alignment and assigned GO terms

TAIR\|locus:2132233 MSH6 "AT4G02070" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|NSE_0335 NSE_0335 "DNA mismatch repair protein MutS" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]	Back alignment and assigned GO terms

TIGR_CMR\|ECH_0824 ECH_0824 "DNA mismatch repair protein MutS" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TTB4 mutS "DNA mismatch repair protein MutS" [Methanosarcina acetivorans C2A (taxid:188937)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0275999 msh1 "mutS homolog" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8A334 mutS "DNA mismatch repair protein MutS" [Bacteroides thetaiotaomicron VPI-5482 (taxid:226186)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7NLT8 mutS "DNA mismatch repair protein MutS" [Gloeobacter violaceus PCC 7421 (taxid:251221)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84LK0	MSH1_ARATH	No assigned EC number	0.7230	0.9866	0.9275	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1051
cd03243		202	cd03243, ABC_MutS_homologs, ATP-binding cassette d	3e-69
smart00534		185	smart00534, MUTSac, ATPase domain of DNA mismatch	1e-52
COG0249		843	COG0249, MutS, Mismatch repair ATPase (MutS family	7e-48
pfam00488		235	pfam00488, MutS_V, MutS domain V	8e-44
cd03286		218	cd03286, ABC_MSH6_euk, ATP-binding cassette domain	5e-41
cd03284		216	cd03284, ABC_MutS1, ATP-binding cassette domain of	7e-41
TIGR01070		840	TIGR01070, mutS1, DNA mismatch repair protein MutS	1e-32
cd03280		200	cd03280, ABC_MutS2, ATP-binding cassette domain of	2e-32
cd03287		222	cd03287, ABC_MSH3_euk, ATP-binding cassette domain	7e-30
cd03283		199	cd03283, ABC_MutS-like, ATP-binding cassette domai	3e-29
cd03285		222	cd03285, ABC_MSH2_euk, ATP-binding cassette domain	3e-29
TIGR01069		771	TIGR01069, mutS2, MutS2 family protein	7e-29
PRK05399		854	PRK05399, PRK05399, DNA mismatch repair protein Mu	2e-28
cd03281		213	cd03281, ABC_MSH5_euk, ATP-binding cassette domain	1e-27
PRK00409		782	PRK00409, PRK00409, recombination and DNA strand e	5e-26
cd10438		72	cd10438, GIY-YIG_MSH, Catalytic GIY-YIG domain of	4e-24
COG1193		753	COG1193, COG1193, Mismatch repair ATPase (MutS fam	5e-22
cd03282		204	cd03282, ABC_MSH4_euk, ATP-binding cassette domain	3e-21
cd03227		162	cd03227, ABC_Class2, ATP-binding cassette domain o	3e-15
pfam01624		113	pfam01624, MutS_I, MutS domain I	1e-12
pfam01541		76	pfam01541, GIY-YIG, GIY-YIG catalytic domain	5e-07
cd00719		69	cd00719, GIY-YIG_SF, GIY-YIG nuclease domain super	9e-07
TIGR01070		840	TIGR01070, mutS1, DNA mismatch repair protein MutS	2e-06
COG0249		843	COG0249, MutS, Mismatch repair ATPase (MutS family	5e-05
PRK13539		207	PRK13539, PRK13539, cytochrome c biogenesis protei	2e-04
pfam13476		204	pfam13476, AAA_23, AAA domain	0.002
COG2827		95	COG2827, COG2827, Predicted endonuclease containin	0.002

>gnl\|CDD\|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs	Back alignment and domain information

 Score =  229 bits (586), Expect = 3e-69
 Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 2/186 (1%)

Query: 741 GSAVHNTVDMQS--LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 798
            + V N +++ S  L L+TGPN GGKS+ LRSI  A LL   G  VPAESASIP  D I 
Sbjct: 17  ETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIF 76

Query: 799 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 858
             + + DS +DG+S+F  E+ E++ I++  T RSLVLIDE+ RGT TA+G  IA +++E 
Sbjct: 77  TRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEH 136

Query: 859 LDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 918
           L   GC  + +TH H +  LP ++       M      G    T+KL+DGIC  S A + 
Sbjct: 137 LLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGLTFTYKLIDGICDPSYALQI 196

Query: 919 AKREGV 924
           A+  G+
Sbjct: 197 AELAGL 202

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 202

>gnl\|CDD\|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family	Back alignment and domain information

>gnl\|CDD\|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215944 pfam00488, MutS_V, MutS domain V	Back alignment and domain information

>gnl\|CDD\|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic MutS6 homolog	Back alignment and domain information

>gnl\|CDD\|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog	Back alignment and domain information

>gnl\|CDD\|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS	Back alignment and domain information

>gnl\|CDD\|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2	Back alignment and domain information

>gnl\|CDD\|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic MutS3 homolog	Back alignment and domain information

>gnl\|CDD\|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog	Back alignment and domain information

>gnl\|CDD\|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic MutS2 homolog	Back alignment and domain information

>gnl\|CDD\|130141 TIGR01069, mutS2, MutS2 family protein	Back alignment and domain information

>gnl\|CDD\|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	Back alignment and domain information

>gnl\|CDD\|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic MutS5 homolog	Back alignment and domain information

>gnl\|CDD\|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|198385 cd10438, GIY-YIG_MSH, Catalytic GIY-YIG domain of eukaryotic DNA mismatch repair protein MutS homologs	Back alignment and domain information

>gnl\|CDD\|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic MutS4 homolog	Back alignment and domain information

>gnl\|CDD\|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins	Back alignment and domain information

>gnl\|CDD\|216613 pfam01624, MutS_I, MutS domain I	Back alignment and domain information

>gnl\|CDD\|216559 pfam01541, GIY-YIG, GIY-YIG catalytic domain	Back alignment and domain information

>gnl\|CDD\|198380 cd00719, GIY-YIG_SF, GIY-YIG nuclease domain superfamily	Back alignment and domain information

>gnl\|CDD\|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS	Back alignment and domain information

>gnl\|CDD\|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>gnl\|CDD\|222160 pfam13476, AAA_23, AAA domain	Back alignment and domain information

>gnl\|CDD\|225383 COG2827, COG2827, Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1051
COG0249		843	MutS Mismatch repair ATPase (MutS family) [DNA rep	100.0
TIGR01070		840	mutS1 DNA mismatch repair protein MutS.	100.0
PRK05399		854	DNA mismatch repair protein MutS; Provisional	100.0
KOG0218		1070	consensus Mismatch repair MSH3 [Replication, recom	100.0
KOG0217		1125	consensus Mismatch repair ATPase MSH6 (MutS family	100.0
KOG0219		902	consensus Mismatch repair ATPase MSH2 (MutS family	100.0
PRK00409		782	recombination and DNA strand exchange inhibitor pr	100.0
TIGR01069		771	mutS2 MutS2 family protein. Function of MutS2 is u	100.0
KOG0220		867	consensus Mismatch repair ATPase MSH4 (MutS family	100.0
KOG0221		849	consensus Mismatch repair ATPase MSH5 (MutS family	100.0
PF00488		235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	100.0
cd03286		218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	100.0
cd03285		222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	100.0
cd03287		222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	100.0
cd03284		216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	100.0
smart00534		185	MUTSac ATPase domain of DNA mismatch repair MUTS f	100.0
cd03282		204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	100.0
cd03281		213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	100.0
cd03283		199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.97
cd03243		202	ABC_MutS_homologs The MutS protein initiates DNA m	99.97
KOG0217		1125	consensus Mismatch repair ATPase MSH6 (MutS family	99.97
COG1193		753	Mismatch repair ATPase (MutS family) [DNA replicat	99.97
cd03280		200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.97
PF01624		113	MutS_I: MutS domain I C-terminus.; InterPro: IPR00	99.96
COG1121		254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.88
COG1126		240	GlnQ ABC-type polar amino acid transport system, A	99.88
COG4152		300	ABC-type uncharacterized transport system, ATPase	99.87
COG1116		248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.87
COG1120		258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.86
COG1131		293	CcmA ABC-type multidrug transport system, ATPase c	99.85
COG1136		226	SalX ABC-type antimicrobial peptide transport syst	99.84
PRK13537		306	nodulation ABC transporter NodI; Provisional	99.82
COG1125		309	OpuBA ABC-type proline/glycine betaine transport s	99.82
COG3842		352	PotA ABC-type spermidine/putrescine transport syst	99.82
PRK13536		340	nodulation factor exporter subunit NodI; Provision	99.82
COG1127		263	Ttg2A ABC-type transport system involved in resist	99.81
COG3839		338	MalK ABC-type sugar transport systems, ATPase comp	99.81
COG1118		345	CysA ABC-type sulfate/molybdate transport systems,	99.81
TIGR01188		302	drrA daunorubicin resistance ABC transporter ATP-b	99.81
COG2884		223	FtsE Predicted ATPase involved in cell division [C	99.81
COG4555		245	NatA ABC-type Na+ transport system, ATPase compone	99.81
cd03226		205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.8
TIGR00960		216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.8
cd03255		218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.8
cd03293		220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.8
COG3638		258	ABC-type phosphate/phosphonate transport system, A	99.8
cd03265		220	ABC_DrrA DrrA is the ATP-binding protein component	99.79
TIGR01288		303	nodI ATP-binding ABC transporter family nodulation	99.79
cd03292		214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.79
PRK11650		356	ugpC glycerol-3-phosphate transporter ATP-binding	99.79
TIGR02673		214	FtsE cell division ATP-binding protein FtsE. This	99.79
cd03259		213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.79
TIGR01166		190	cbiO cobalt transport protein ATP-binding subunit.	99.79
TIGR03265		353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.79
cd03268		208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.79
cd03225		211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.78
PRK11247		257	ssuB aliphatic sulfonates transport ATP-binding su	99.78
PRK11432		351	fbpC ferric transporter ATP-binding subunit; Provi	99.78
TIGR02211		221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.78
cd03261		235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.78
TIGR01186		363	proV glycine betaine/L-proline transport ATP bindi	99.78
cd03214		180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.78
cd03269		210	ABC_putative_ATPase This subfamily is involved in	99.78
TIGR02314		343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.78
cd03256		241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.78
TIGR03522		301	GldA_ABC_ATP gliding motility-associated ABC trans	99.78
PRK11629		233	lolD lipoprotein transporter ATP-binding subunit;	99.78
smart00533		308	MUTSd DNA-binding domain of DNA mismatch repair MU	99.78
cd03218		232	ABC_YhbG The ABC transporters belonging to the Yhb	99.78
TIGR03864		236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.78
cd03219		236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.78
TIGR02315		243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.78
PRK09536		402	btuD corrinoid ABC transporter ATPase; Reviewed	99.78
cd03263		220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.78
cd03301		213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.78
cd03258		233	ABC_MetN_methionine_transporter MetN (also known a	99.78
PRK13647		274	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
COG1137		243	YhbG ABC-type (unclassified) transport system, ATP	99.77
COG1117		253	PstB ABC-type phosphate transport system, ATPase c	99.77
COG1122		235	CbiO ABC-type cobalt transport system, ATPase comp	99.77
PRK10584		228	putative ABC transporter ATP-binding protein YbbA;	99.77
PRK10908		222	cell division protein FtsE; Provisional	99.77
PRK11000		369	maltose/maltodextrin transporter ATP-binding prote	99.77
PRK13644		274	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
TIGR03608		206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.77
cd03262		213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.77
TIGR03258		362	PhnT 2-aminoethylphosphonate ABC transport system,	99.77
cd03266		218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.77
PRK09452		375	potA putrescine/spermidine ABC transporter ATPase	99.77
cd03224		222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.77
cd03246		173	ABCC_Protease_Secretion This family represents the	99.77
PRK11607		377	potG putrescine transporter ATP-binding subunit; P	99.76
PRK11153		343	metN DL-methionine transporter ATP-binding subunit	99.76
cd03294		269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.76
COG1135		339	AbcC ABC-type metal ion transport system, ATPase c	99.76
PRK13637		287	cbiO cobalt transporter ATP-binding subunit; Provi	99.76
cd03235		213	ABC_Metallic_Cations ABC component of the metal-ty	99.76
PRK09493		240	glnQ glutamine ABC transporter ATP-binding protein	99.76
PRK10851		353	sulfate/thiosulfate transporter subunit; Provision	99.76
cd03296		239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.76
TIGR03410		230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.76
PRK11248		255	tauB taurine transporter ATP-binding subunit; Prov	99.76
cd03267		236	ABC_NatA_like Similar in sequence to NatA, this is	99.76
PRK11300		255	livG leucine/isoleucine/valine transporter ATP-bin	99.76
PRK11264		250	putative amino-acid ABC transporter ATP-binding pr	99.76
TIGR03415		382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.76
TIGR03740		223	galliderm_ABC gallidermin-class lantibiotic protec	99.76
cd03238		176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.76
cd03260		227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.76
PRK13538		204	cytochrome c biogenesis protein CcmA; Provisional	99.76
cd03237		246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.75
PRK10070		400	glycine betaine transporter ATP-binding subunit; P	99.75
PRK13638		271	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
cd03295		242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.75
PRK10895		241	lipopolysaccharide ABC transporter ATP-binding pro	99.75
PRK13650		279	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK13635		279	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
cd03264		211	ABC_drug_resistance_like ABC-type multidrug transp	99.75
PRK13652		277	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK13633		280	cobalt transporter ATP-binding subunit; Provisiona	99.75
COG1124		252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.75
PRK11831		269	putative ABC transporter ATP-binding protein YrbF;	99.75
PRK13636		283	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
cd03227		162	ABC_Class2 ABC-type Class 2 contains systems invol	99.75
PRK15056		272	manganese/iron transporter ATP-binding protein; Pr	99.75
PRK13548		258	hmuV hemin importer ATP-binding subunit; Provision	99.75
PRK13540		200	cytochrome c biogenesis protein CcmA; Provisional	99.75
TIGR03411		242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.75
cd03231		201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.75
cd03230		173	ABC_DR_subfamily_A This family of ATP-binding prot	99.75
PRK13648		269	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK13639		275	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK13641		287	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK13539		207	cytochrome c biogenesis protein CcmA; Provisional	99.75
cd03216		163	ABC_Carb_Monos_I This family represents the domain	99.75
cd03298		211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.75
PRK13632		271	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK13643		288	cbiO cobalt transporter ATP-binding subunit; Provi	99.74
PRK10247		225	putative ABC transporter ATP-binding protein YbbL;	99.74
PRK14250		241	phosphate ABC transporter ATP-binding protein; Pro	99.74
TIGR01184		230	ntrCD nitrate transport ATP-binding subunits C and	99.74
TIGR03873		256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.74
PRK09544		251	znuC high-affinity zinc transporter ATPase; Review	99.74
PRK10575		265	iron-hydroxamate transporter ATP-binding subunit;	99.74
PRK11614		237	livF leucine/isoleucine/valine transporter ATP-bin	99.74
TIGR01978		243	sufC FeS assembly ATPase SufC. SufC is part of the	99.74
PRK11124		242	artP arginine transporter ATP-binding subunit; Pro	99.74
PRK13651		305	cobalt transporter ATP-binding subunit; Provisiona	99.74
COG0411		250	LivG ABC-type branched-chain amino acid transport	99.74
cd03257		228	ABC_NikE_OppD_transporters The ABC transporter sub	99.74
PRK11022		326	dppD dipeptide transporter ATP-binding subunit; Pr	99.74
TIGR03005		252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.74
TIGR01189		198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.74
cd03247		178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.74
PRK10253		265	iron-enterobactin transporter ATP-binding protein;	99.74
cd03228		171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.74
TIGR02769		265	nickel_nikE nickel import ATP-binding protein NikE	99.74
PRK11231		255	fecE iron-dicitrate transporter ATP-binding subuni	99.74
cd03254		229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.74
cd03229		178	ABC_Class3 This class is comprised of all BPD (Bin	99.74
COG4175		386	ProV ABC-type proline/glycine betaine transport sy	99.74
PRK10619		257	histidine/lysine/arginine/ornithine transporter su	99.74
PRK13640		282	cbiO cobalt transporter ATP-binding subunit; Provi	99.74
cd03252		237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.74
PRK13543		214	cytochrome c biogenesis protein CcmA; Provisional	99.74
TIGR02982		220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.74
cd03245		220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.74
PRK13634		290	cbiO cobalt transporter ATP-binding subunit; Provi	99.73
PRK09984		262	phosphonate/organophosphate ester transporter subu	99.73
PRK13646		286	cbiO cobalt transporter ATP-binding subunit; Provi	99.73
TIGR00968		237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.73
COG4619		223	ABC-type uncharacterized transport system, ATPase	99.73
COG3840		231	ThiQ ABC-type thiamine transport system, ATPase co	99.73
PRK15439		510	autoinducer 2 ABC transporter ATP-binding protein	99.73
PRK15079		331	oligopeptide ABC transporter ATP-binding protein O	99.73
cd03223		166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.73
PRK13649		280	cbiO cobalt transporter ATP-binding subunit; Provi	99.73
TIGR01277		213	thiQ thiamine ABC transporter, ATP-binding protein	99.73
cd03251		234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.73
PRK15093		330	antimicrobial peptide ABC transporter ATP-binding	99.73
COG4598		256	HisP ABC-type histidine transport system, ATPase c	99.73
COG4181		228	Predicted ABC-type transport system involved in ly	99.73
COG4525		259	TauB ABC-type taurine transport system, ATPase com	99.73
cd03249		238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.73
PRK10762		501	D-ribose transporter ATP binding protein; Provisio	99.73
cd03220		224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.73
cd03253		236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.73
PRK15112		267	antimicrobial peptide ABC system ATP-binding prote	99.73
PRK03695		248	vitamin B12-transporter ATPase; Provisional	99.73
cd03234		226	ABCG_White The White subfamily represents ABC tran	99.73
TIGR02770		230	nickel_nikD nickel import ATP-binding protein NikD	99.73
PRK11701		258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.72
cd03248		226	ABCC_TAP TAP, the Transporter Associated with Anti	99.72
PRK11308		327	dppF dipeptide transporter ATP-binding subunit; Pr	99.72
TIGR02142		354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.72
PRK14237		267	phosphate transporter ATP-binding protein; Provisi	99.72
cd03217		200	ABC_FeS_Assembly ABC-type transport system involve	99.72
PRK10418		254	nikD nickel transporter ATP-binding protein NikD;	99.72
PRK09700		510	D-allose transporter ATP-binding protein; Provisio	99.72
cd03232		192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.72
PRK14268		258	phosphate ABC transporter ATP-binding protein; Pro	99.72
PRK13549		506	xylose transporter ATP-binding subunit; Provisiona	99.72
PRK11144		352	modC molybdate transporter ATP-binding protein; Pr	99.72
PRK13642		277	cbiO cobalt transporter ATP-binding subunit; Provi	99.72
PRK10419		268	nikE nickel transporter ATP-binding protein NikE;	99.72
TIGR00972		247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.72
PRK13645		289	cbiO cobalt transporter ATP-binding subunit; Provi	99.72
cd03250		204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.72
PRK14242		253	phosphate transporter ATP-binding protein; Provisi	99.72
cd03215		182	ABC_Carb_Monos_II This family represents domain II	99.72
PRK09473		330	oppD oligopeptide transporter ATP-binding componen	99.71
cd03290		218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.71
TIGR02324		224	CP_lyasePhnL phosphonate C-P lyase system protein	99.71
PRK14245		250	phosphate ABC transporter ATP-binding protein; Pro	99.71
cd03213		194	ABCG_EPDR ABCG transporters are involved in eye pi	99.71
cd03297		214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.71
cd03300		232	ABC_PotA_N PotA is an ABC-type transporter and the	99.71
PRK13631		320	cbiO cobalt transporter ATP-binding subunit; Provi	99.71
TIGR02323		253	CP_lyasePhnK phosphonate C-P lyase system protein	99.71
cd03244		221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.71
PRK14275		286	phosphate ABC transporter ATP-binding protein; Pro	99.71
PRK13546		264	teichoic acids export protein ATP-binding subunit;	99.71
PRK10938		490	putative molybdenum transport ATP-binding protein	99.71
COG0410		237	LivF ABC-type branched-chain amino acid transport	99.71
PRK14247		250	phosphate ABC transporter ATP-binding protein; Pro	99.71
PRK10771		232	thiQ thiamine transporter ATP-binding subunit; Pro	99.71
PRK13541		195	cytochrome c biogenesis protein CcmA; Provisional	99.71
PRK10982		491	galactose/methyl galaxtoside transporter ATP-bindi	99.71
PRK13547		272	hmuV hemin importer ATP-binding subunit; Provision	99.7
TIGR03269		520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.7
PRK09580		248	sufC cysteine desulfurase ATPase component; Review	99.7
cd03222		177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.7
PRK13545		549	tagH teichoic acids export protein ATP-binding sub	99.7
PRK14235		267	phosphate transporter ATP-binding protein; Provisi	99.7
PRK11288		501	araG L-arabinose transporter ATP-binding protein;	99.7
PRK14273		254	phosphate ABC transporter ATP-binding protein; Pro	99.7
COG1119		257	ModF ABC-type molybdenum transport system, ATPase	99.7
PRK10744		260	pstB phosphate transporter ATP-binding protein; Pr	99.7
PRK13549		506	xylose transporter ATP-binding subunit; Provisiona	99.7
cd03299		235	ABC_ModC_like Archeal protein closely related to M	99.7
CHL00131		252	ycf16 sulfate ABC transporter protein; Validated	99.7
PRK14248		268	phosphate ABC transporter ATP-binding protein; Pro	99.7
TIGR01257		2272	rim_protein retinal-specific rim ABC transporter.	99.7
PRK14269		246	phosphate ABC transporter ATP-binding protein; Pro	99.7
PRK14244		251	phosphate ABC transporter ATP-binding protein; Pro	99.7
PRK14256		252	phosphate ABC transporter ATP-binding protein; Pro	99.69
PRK14274		259	phosphate ABC transporter ATP-binding protein; Pro	99.69
cd03236		255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.69
TIGR02633		500	xylG D-xylose ABC transporter, ATP-binding protein	99.69
cd03289		275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.69
PRK14251		251	phosphate ABC transporter ATP-binding protein; Pro	99.69
PRK09700		510	D-allose transporter ATP-binding protein; Provisio	99.69
PRK14241		258	phosphate transporter ATP-binding protein; Provisi	99.69
PRK15439		510	autoinducer 2 ABC transporter ATP-binding protein	99.69
TIGR02633		500	xylG D-xylose ABC transporter, ATP-binding protein	99.69
PRK11288		501	araG L-arabinose transporter ATP-binding protein;	99.69
PRK14262		250	phosphate ABC transporter ATP-binding protein; Pro	99.69
PRK14267		253	phosphate ABC transporter ATP-binding protein; Pro	99.69
cd03369		207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.69
COG4586		325	ABC-type uncharacterized transport system, ATPase	99.69
PRK14239		252	phosphate transporter ATP-binding protein; Provisi	99.69
PRK14240		250	phosphate transporter ATP-binding protein; Provisi	99.68
TIGR01257		2272	rim_protein retinal-specific rim ABC transporter.	99.68
PRK14270		251	phosphate ABC transporter ATP-binding protein; Pro	99.68
PRK14246		257	phosphate ABC transporter ATP-binding protein; Pro	99.68
TIGR03771		223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.68
cd03221		144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.68
PRK14259		269	phosphate ABC transporter ATP-binding protein; Pro	99.68
cd03233		202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.68
PRK14255		252	phosphate ABC transporter ATP-binding protein; Pro	99.68
COG0444		316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.67
PRK10938		490	putative molybdenum transport ATP-binding protein	99.67
PRK10762		501	D-ribose transporter ATP binding protein; Provisio	99.67
PRK14265		274	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK15177		213	Vi polysaccharide export ATP-binding protein VexC;	99.67
PRK10261		623	glutathione transporter ATP-binding protein; Provi	99.67
cd03288		257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.67
PRK15134		529	microcin C ABC transporter ATP-binding protein Yej	99.67
PRK14253		249	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK10261		623	glutathione transporter ATP-binding protein; Provi	99.67
TIGR03269		520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.67
PRK14272		252	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK15134		529	microcin C ABC transporter ATP-binding protein Yej	99.67
cd03291		282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.67
PRK10982		491	galactose/methyl galaxtoside transporter ATP-bindi	99.67
PRK14261		253	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK14249		251	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK14271		276	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK13409		590	putative ATPase RIL; Provisional	99.66
cd00267		157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.66
PRK14264		305	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK14254		285	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK14236		272	phosphate transporter ATP-binding protein; Provisi	99.66
PRK14238		271	phosphate transporter ATP-binding protein; Provisi	99.66
COG1129		500	MglA ABC-type sugar transport system, ATPase compo	99.66
PRK14263		261	phosphate ABC transporter ATP-binding protein; Pro	99.66
COG4559		259	ABC-type hemin transport system, ATPase component	99.65
PRK14258		261	phosphate ABC transporter ATP-binding protein; Pro	99.65
COG0396		251	sufC Cysteine desulfurase activator ATPase [Posttr	99.65
PRK14252		265	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14260		259	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK15064		530	ABC transporter ATP-binding protein; Provisional	99.65
PRK11819		556	putative ABC transporter ATP-binding protein; Revi	99.65
COG4161		242	ArtP ABC-type arginine transport system, ATPase co	99.65
COG4604		252	CeuD ABC-type enterochelin transport system, ATPas	99.64
PRK14257		329	phosphate ABC transporter ATP-binding protein; Pro	99.64
PRK14266		250	phosphate ABC transporter ATP-binding protein; Pro	99.64
PRK14243		264	phosphate transporter ATP-binding protein; Provisi	99.64
PRK10522		547	multidrug transporter membrane component/ATP-bindi	99.64
COG1134		249	TagH ABC-type polysaccharide/polyol phosphate tran	99.64
TIGR01187		325	potA spermidine/putrescine ABC transporter ATP-bin	99.64
COG1123		539	ATPase components of various ABC-type transport sy	99.64
COG3845		501	ABC-type uncharacterized transport systems, ATPase	99.64
PLN03211		659	ABC transporter G-25; Provisional	99.64
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.63
PRK10636		638	putative ABC transporter ATP-binding protein; Prov	99.63
PRK13409		590	putative ATPase RIL; Provisional	99.63
COG4133		209	CcmA ABC-type transport system involved in cytochr	99.63
TIGR03719		552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.62
TIGR01842		544	type_I_sec_PrtD type I secretion system ABC transp	99.62
PRK15064		530	ABC transporter ATP-binding protein; Provisional	99.61
PRK10535		648	macrolide transporter ATP-binding /permease protei	99.61
PRK13657		588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.61
PRK10636		638	putative ABC transporter ATP-binding protein; Prov	99.61
cd03270		226	ABC_UvrA_I The excision repair protein UvrA domain	99.61
PRK10790		592	putative multidrug transporter membrane\ATP-bindin	99.61
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.6
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	99.6
KOG0057		591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.6
PLN03073		718	ABC transporter F family; Provisional	99.6
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	99.6
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.6
TIGR01192		585	chvA glucan exporter ATP-binding protein. This mod	99.6
COG4988		559	CydD ABC-type transport system involved in cytochr	99.59
cd03278		197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.59
TIGR01194		555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.59
TIGR03719		552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.59
PRK11160		574	cysteine/glutathione ABC transporter membrane/ATP-	99.59
TIGR02203		571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.59
PRK11819		556	putative ABC transporter ATP-binding protein; Revi	99.59
PRK11147		635	ABC transporter ATPase component; Reviewed	99.59
COG4608		268	AppF ABC-type oligopeptide transport system, ATPas	99.58
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	99.58
KOG0059		885	consensus Lipid exporter ABCA1 and related protein	99.58
TIGR00954		659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.58
COG1123		539	ATPase components of various ABC-type transport sy	99.57
PRK11147		635	ABC transporter ATPase component; Reviewed	99.57
COG0488		530	Uup ATPase components of ABC transporters with dup	99.57
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.57
TIGR00958		711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.57
TIGR00955		617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.57
COG0488		530	Uup ATPase components of ABC transporters with dup	99.57
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	99.57
COG4987		573	CydC ABC-type transport system involved in cytochr	99.57
TIGR02204		576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.57
COG4674		249	Uncharacterized ABC-type transport system, ATPase	99.56
PRK10789		569	putative multidrug transporter membrane\ATP-bindin	99.56
TIGR02857		529	CydD thiol reductant ABC exporter, CydD subunit. U	99.55
PLN03140		1470	ABC transporter G family member; Provisional	99.55
COG4148		352	ModC ABC-type molybdate transport system, ATPase c	99.55
COG4136		213	ABC-type uncharacterized transport system, ATPase	99.55
COG4107		258	PhnK ABC-type phosphonate transport system, ATPase	99.55
PLN03073		718	ABC transporter F family; Provisional	99.54
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	99.54
COG1101		263	PhnK ABC-type uncharacterized transport system, AT	99.54
TIGR00956		1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.54
COG4618		580	ArpD ABC-type protease/lipase transport system, AT	99.52
cd03274		212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.52
COG0249		843	MutS Mismatch repair ATPase (MutS family) [DNA rep	99.51
cd03272		243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.5
COG1132		567	MdlB ABC-type multidrug transport system, ATPase a	99.49
PTZ00243		1560	ABC transporter; Provisional	99.49
KOG0055		1228	consensus Multidrug/pheromone exporter, ABC superf	99.48
cd03279		213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.48
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.48
KOG0927		614	consensus Predicted transporter (ABC superfamily)	99.47
cd03271		261	ABC_UvrA_II The excision repair protein UvrA domai	99.47
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	99.46
TIGR00956		1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.45
KOG0061		613	consensus Transporter, ABC superfamily (Breast can	99.44
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.44
PLN03140		1470	ABC transporter G family member; Provisional	99.43
PLN03232		1495	ABC transporter C family member; Provisional	99.42
KOG0062		582	consensus ATPase component of ABC transporters wit	99.41
PLN03130		1622	ABC transporter C family member; Provisional	99.4
cd03240		204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.4
cd03276		198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.4
PTZ00243		1560	ABC transporter; Provisional	99.4
PLN03232		1495	ABC transporter C family member; Provisional	99.4
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	99.4
cd03273		251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.39
TIGR01070		840	mutS1 DNA mismatch repair protein MutS.	99.39
cd03275		247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.39
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	99.39
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	99.39
PLN03130		1622	ABC transporter C family member; Provisional	99.37
COG4138		248	BtuD ABC-type cobalamin transport system, ATPase c	99.37
COG4172		534	ABC-type uncharacterized transport system, duplica	99.36
COG4778		235	PhnL ABC-type phosphonate transport system, ATPase	99.36
KOG0058		716	consensus Peptide exporter, ABC superfamily [Intra	99.36
PF00005		137	ABC_tran: ABC transporter This structure is on hol	99.34
PRK05399		854	DNA mismatch repair protein MutS; Provisional	99.34
KOG0056		790	consensus Heavy metal exporter HMT1, ABC superfami	99.33
COG4172		534	ABC-type uncharacterized transport system, duplica	99.31
KOG0066		807	consensus eIF2-interacting protein ABC50 (ABC supe	99.3
cd03239		178	ABC_SMC_head The structural maintenance of chromos	99.28
KOG0055		1228	consensus Multidrug/pheromone exporter, ABC superf	99.26
cd03277		213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.25
KOG0927		614	consensus Predicted transporter (ABC superfamily)	99.22
COG4615		546	PvdE ABC-type siderophore export system, fused ATP	99.22
COG4178		604	ABC-type uncharacterized transport system, permeas	99.19
TIGR00630		924	uvra excinuclease ABC, A subunit. This family is b	99.18
COG1245		591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.16
PRK00349		943	uvrA excinuclease ABC subunit A; Reviewed	99.15
COG1245		591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.15
PRK00635		1809	excinuclease ABC subunit A; Provisional	99.15
KOG0065		1391	consensus Pleiotropic drug resistance proteins (PD	99.14
COG2401		593	ABC-type ATPase fused to a predicted acetyltransfe	99.09
COG4167		267	SapF ABC-type antimicrobial peptide transport syst	99.05
KOG2355		291	consensus Predicted ABC-type transport, ATPase com	99.03
PF05192		204	MutS_III: MutS domain III C-terminus.; InterPro: I	99.01
KOG0054		1381	consensus Multidrug resistance-associated protein/	98.99
KOG0219		902	consensus Mismatch repair ATPase MSH2 (MutS family	98.98
COG3910		233	Predicted ATPase [General function prediction only	98.96
cd03241		276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	98.94
KOG0060		659	consensus Long-chain acyl-CoA transporter, ABC sup	98.92
KOG0064		728	consensus Peroxisomal long-chain acyl-CoA transpor	98.92
COG5265		497	ATM1 ABC-type transport system involved in Fe-S cl	98.9
KOG0054		1381	consensus Multidrug resistance-associated protein/	98.83
KOG0066		807	consensus eIF2-interacting protein ABC50 (ABC supe	98.78
COG4170		330	SapD ABC-type antimicrobial peptide transport syst	98.77
KOG0062		582	consensus ATPase component of ABC transporters wit	98.74
COG1129		500	MglA ABC-type sugar transport system, ATPase compo	98.73
PF02463		220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.7
COG0178		935	UvrA Excinuclease ATPase subunit [DNA replication,	98.69
PRK00635		1809	excinuclease ABC subunit A; Provisional	98.62
TIGR02858		270	spore_III_AA stage III sporulation protein AA. Mem	98.58
PRK08533		230	flagellar accessory protein FlaH; Reviewed	98.51
cd03242		270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.49
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	98.37
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	98.37
PF05192		204	MutS_III: MutS domain III C-terminus.; InterPro: I	98.35
PF13304		303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.34
KOG0063		592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.33
TIGR00630		924	uvra excinuclease ABC, A subunit. This family is b	98.3
PRK00349		943	uvrA excinuclease ABC subunit A; Reviewed	98.29
KOG0218		1070	consensus Mismatch repair MSH3 [Replication, recom	98.26
PRK13695		174	putative NTPase; Provisional	98.19
smart00382		148	AAA ATPases associated with a variety of cellular	98.11
PRK06067		234	flagellar accessory protein FlaH; Validated	98.08
cd01131		198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.9
PRK07721		438	fliI flagellum-specific ATP synthase; Validated	97.86
KOG0065		1391	consensus Pleiotropic drug resistance proteins (PD	97.84
COG3845		501	ABC-type uncharacterized transport systems, ATPase	97.84
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	97.8
smart00533		308	MUTSd DNA-binding domain of DNA mismatch repair MU	97.79
PRK10869		553	recombination and repair protein; Provisional	97.63
KOG0063		592	consensus RNAse L inhibitor, ABC superfamily [RNA	97.63
cd01125		239	repA Hexameric Replicative Helicase RepA. RepA is	97.62
TIGR02788		308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.62
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	97.6
PRK06793		432	fliI flagellum-specific ATP synthase; Validated	97.57
cd00820		107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.52
PTZ00132		215	GTP-binding nuclear protein Ran; Provisional	97.52
PRK14721		420	flhF flagellar biosynthesis regulator FlhF; Provis	97.51
PRK04296		190	thymidine kinase; Provisional	97.49
TIGR00618		1042	sbcc exonuclease SbcC. This family is based on the	97.49
PRK09183		259	transposase/IS protein; Provisional	97.47
TIGR01420		343	pilT_fam pilus retraction protein PilT. This model	97.45
cd02023		198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.41
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	97.37
PRK13830		818	conjugal transfer protein TrbE; Provisional	97.34
cd01130		186	VirB11-like_ATPase Type IV secretory pathway compo	97.34
PRK03918		880	chromosome segregation protein; Provisional	97.33
PF13555		62	AAA_29: P-loop containing region of AAA domain	97.33
PRK10246		1047	exonuclease subunit SbcC; Provisional	97.27
PF05188		137	MutS_II: MutS domain II; InterPro: IPR007860 Misma	97.25
TIGR03881		229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.24
PRK06893		229	DNA replication initiation factor; Validated	97.24
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	97.24
PRK01156		895	chromosome segregation protein; Provisional	97.24
PHA02562		562	46 endonuclease subunit; Provisional	97.23
cd01121		372	Sms Sms (bacterial radA) DNA repair protein. This	97.15
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.08
PRK14722		374	flhF flagellar biosynthesis regulator FlhF; Provis	97.08
cd01123		235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.07
PRK06921		266	hypothetical protein; Provisional	97.07
TIGR00416		454	sms DNA repair protein RadA. The gene protuct code	97.06
PF00004		132	AAA: ATPase family associated with various cellula	97.03
PRK06995		484	flhF flagellar biosynthesis regulator FlhF; Valida	97.01
PRK06731		270	flhF flagellar biosynthesis regulator FlhF; Valida	97.01
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	97.0
PRK13898		800	type IV secretion system ATPase VirB4; Provisional	96.99
PRK14723		767	flhF flagellar biosynthesis regulator FlhF; Provis	96.99
PRK07952		244	DNA replication protein DnaC; Validated	96.97
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.96
cd01128		249	rho_factor Transcription termination factor rho is	96.96
PRK14088		440	dnaA chromosomal replication initiation protein; P	96.95
PRK06526		254	transposase; Provisional	96.95
PRK12377		248	putative replication protein; Provisional	96.94

>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]	Back alignment and domain information

Probab=100.00  E-value=6.7e-112  Score=1039.43  Aligned_cols=733  Identities=24%  Similarity=0.327  Sum_probs=620.9

Q ss_pred             chHHHHHHHHhcCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCccccccCcccHHHHHHHHHHCCceEEEE
Q 001570          126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIV  205 (1051)
Q Consensus       126 ~~~~~~~~~K~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~~~~~~~~~~~g~P~~~~~~~l~~L~~~G~~vai~  205 (1051)
                      .|++||+++|++|||++||||||||||+|++||+.+|++|+|++|+  + +.+||||||+|+++.|+.+||++|||||||
T Consensus         8 P~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~--r-~~~pm~gvP~h~~~~yl~~li~~g~kVAic   84 (843)
T COG0249           8 PMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTK--R-GNIPMAGVPYHALDYYLAKLIELGYKVAIC   84 (843)
T ss_pred             cHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeec--C-CCCcCCCCccccHHHHHHHHHhCCCeEEEE
Confidence            5999999999999999999999999999999999999999999998  3 339999999999999999999999999999


Q ss_pred             eccCCccccCCcceEeeeeeecCCCccccccccCCCCCCCCCCcc-----EEEEEcCCceEEEEEeccccceeeeecCCC
Q 001570          206 EEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMP-----VIGVSRSAKGYCIISILETMKTYSLEDGLT  280 (1051)
Q Consensus       206 eq~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~-----~~gi~~~~~~~~~~s~~~~~~~~~v~~~~t  280 (1051)
                      ||+++|+.+|++|+|.|+||+||||.+++.++.+..+ ||++++.     .+|+     +|+|+|||+|.    +.++. 
T Consensus        85 eQ~e~~~~~k~~v~R~v~rv~TpGt~~d~~~l~~~~~-n~l~a~~~~~~~~~gl-----a~~dlstGef~----~~~~~-  153 (843)
T COG0249          85 EQLEDPAEAKGVVERKVVRVVTPGTLTDEALLSDREN-NYLAALAIDRDGKVGL-----AFIDLSTGEFF----VSEFE-  153 (843)
T ss_pred             EcccChhhhcCcceeEEEEEECCCeeecccccccccc-ceEEEEEecCCCEEEE-----EEEEcccCeEE----EEEee-
Confidence            9999999999999999999999999999998877777 7876654     4666     77777777766    88887 


Q ss_pred             HHHHHHHHHcCCcceEEEcCCcccCCCCCccccccCCCCccccccccccccc-cCCchHHHHHHH---Hh--hhcCCCCc
Q 001570          281 EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEW-FEGDPVIELLLK---VK--ELYGLENE  354 (1051)
Q Consensus       281 ~~~l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-f~~~~~~~ll~~---v~--~~~gl~~~  354 (1051)
                      .+.+.++|.+++|.||+++.++.+...     .+  .   .....+++...| |+.+.+...+..   +.  +++|+...
T Consensus       154 ~~~l~~~l~r~~p~Eil~~~~~~~~~~-----~~--~---~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~l~~~~~~~~  223 (843)
T COG0249         154 REKLLSELKRLQPKELLLSESLLSSTL-----AE--I---QKGLFVVRLPASFFDEDDAEEILSEYFGVRDLDGFGLIST  223 (843)
T ss_pred             HHHHHHHHHhCCCcEEEeccccCchhh-----hh--h---hhceeeeecchhhcCccHHHHHHHHHhCcccccccccccc
Confidence            888999999999999999988642210     00  0   001134556677 665555444442   22  33555442


Q ss_pred             cc-c------------cccc-ccCCccccc------eeecHHhhh--ccCCCC-C---CCccceEecCCCccCCCHHHHH
Q 001570          355 VT-F------------RNVT-VSYENRPRP------LHLGTATQI--GAIPTE-G---IPCLLKVLLPSNCSGLPILYVR  408 (1051)
Q Consensus       355 ~~-~------------~~~~-~~~~~~~~~------LyLd~~Tq~--ell~~~-~---~~sLl~v~l~~t~t~mg~r~LR  408 (1051)
                      +. +            .+.. .++...+..      |.||.+|++  |++++. |   .+||+++ +|.|.|+||.|.||
T Consensus       224 ~~~~~a~~~ll~Y~~~t~~~~l~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~-ld~t~T~mG~RlL~  302 (843)
T COG0249         224 PLALSAAGALLSYLKDTQKTFLPHIQIIQRYDLEDYMVLDAATRRNLELFSNLRGNGKKGSLFWL-LDRTVTPMGSRLLK  302 (843)
T ss_pred             hHHHHHHHHHHHHHHHhhhccccccccceeeccCcEEEEcHHHHhcccccccCCCCCCCCcHHHH-hccCCCchhHHHHH
Confidence            21 1            1111 012222222      899999999  778872 2   3499999 99999999999999


Q ss_pred             HhhhcCCcccHHHHHHHHHhHhhhh-------------hcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChH
Q 001570          409 DLLLNPPAYEIASTIQAICKLMSKV-------------TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSE  475 (1051)
Q Consensus       409 ~llL~P~~~sl~~~I~~r~t~mg~~-------------l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~  475 (1051)
                      +|+..|+. +.. .|+.|+++|+.|             |..+||++||.+||..++++++|+..+++.+..+      |+
T Consensus       303 ~wl~~PL~-~~~-~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~~~rDl~~l~~~l~~~------~~  374 (843)
T COG0249         303 RWLLQPLL-DKE-EIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRASPRDLLRLRDSLEKI------PE  374 (843)
T ss_pred             HHhhCccc-CHH-HHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCCChhhHHHHHHHHHHH------HH
Confidence            99999999 888 999999999987             8889999999999999999999999999999999      99


Q ss_pred             HHHHHHhccCchhhcccchhhHHHhhhHhHHHHHHHHHhhhccCCchhhhccCCCCChhHHhhcchhhhhhhhhcccchh
Q 001570          476 LNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPE  555 (1051)
Q Consensus       476 l~~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~l~~e~p~~~~~~~~I~~~f~~~lds~~~g~V~~~~~~e~  555 (1051)
                      +...+.....+.. -.....+++ -+..+.+....+...+.  ++||..+++ ++|++||+.++|               
T Consensus       375 i~~~l~~~~~~~~-l~~~~~~i~-~~~~~~e~~~ll~~~i~--~~~~~~~~~-~ii~~g~~~eLd---------------  434 (843)
T COG0249         375 IFKLLSSLKSESD-LLLLLEDIE-SLDYLAELLELLETAIN--EDPPLAVRD-GIIKEGYNIELD---------------  434 (843)
T ss_pred             HHHHHhccccchh-hhHHhhhhh-ccccHHHHHHHHHHHhh--hcchhhcch-hHHhcchhHHHH---------------
Confidence            9998886653310 000111222 12224467777888888  899999999 999999999998               


Q ss_pred             HHHHHHHHHHHHHhhccCch-hHHhhhhccccCCCCCchhhhhhhcccceeecccccccccccCCCCccccccccccccc
Q 001570          556 IAEVEMAAEALSLAVTEDFL-PIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDS  634 (1051)
Q Consensus       556 l~elr~l~~~L~~aI~ed~l-pi~~re~~~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~l~~~~~~  634 (1051)
                        +++.+.+.     .++|+ .++.+++.   ++|+.+++++|++++      |||++++    ......+|.   .|.+
T Consensus       435 --~lr~~~~~-----~~~~i~~le~~~r~---~~gi~slki~~n~v~------Gy~ievt----~~~~~~~p~---~~ir  491 (843)
T COG0249         435 --ELRDLLNN-----AKEWIAKLELEERE---RTGIKSLKIKYNKVY------GYYIEVT----KSNAKLVPD---DYIR  491 (843)
T ss_pred             --HHHHHHHH-----HHHHHHHHHHHHHH---hcCCchhhhhhhccc------eeEEEec----hhccccCch---HHHH
Confidence              88888887     66776 77777777   889999999999999      9999993    333334443   3445


Q ss_pred             cCccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCc
Q 001570          635 KGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPA  714 (1051)
Q Consensus       635 ~g~~v~~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~~~~~~~P~  714 (1051)
                      .++..+.++|+|+++++.++++..++.++.....+++.++.+.+..+++.|..++..++..|++.++|..|...+||+|+
T Consensus       492 ~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~  571 (843)
T COG0249         492 RQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPE  571 (843)
T ss_pred             HHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCce
Confidence            55556667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc----ccccccceeecccCCcccccCCCceeeeeEee---ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCC
Q 001570          715 LKDI----ELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE  787 (1051)
Q Consensus       715 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~vl~~isl---g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~  787 (1051)
                      +++.    +.+||||++...        ....+|+||+++   +++++|||||||||||+||++|.+++|||+|+||||+
T Consensus       572 ~~~~~~l~i~~gRHPvvE~~--------~~~~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~  643 (843)
T COG0249         572 FVDSNDLEIKEGRHPVVEAV--------LDNGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAE  643 (843)
T ss_pred             ecCCCCEEEEecCcchhhhh--------ccCCcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHH
Confidence            9985    344555544222        222399999999   4899999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC-CcEE
Q 001570          788 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLG  866 (1051)
Q Consensus       788 ~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~-g~~v  866 (1051)
                      .+.++.+|+||+++|..|++..+.|||+.||.+++.|++.+++.|||||||.|+||++.||.+|+|+++++|++. ++.+
T Consensus       644 ~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~t  723 (843)
T COG0249         644 KARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRT  723 (843)
T ss_pred             HccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999985 9999


Q ss_pred             EEeccChhhhhCcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 001570          867 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN  942 (1051)
Q Consensus       867 i~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~~  942 (1051)
                      ||+|||+|++++....+.+.|.||...+.++++.|.|++.+|.+++|||++||+++|+|.+||+||++++.+++..
T Consensus       724 LFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~  799 (843)
T COG0249         724 LFATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKE  799 (843)
T ss_pred             EEeccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999988999999999999999999999999999999999999999999999999999999998754

>TIGR01070 mutS1 DNA mismatch repair protein MutS	Back alignment and domain information

>PRK05399 DNA mismatch repair protein MutS; Provisional	Back alignment and domain information

>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]	Back alignment and domain information

>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]	Back alignment and domain information

>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]	Back alignment and domain information

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>TIGR01069 mutS2 MutS2 family protein	Back alignment and domain information

>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]	Back alignment and domain information

>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]	Back alignment and domain information

>PF00488 MutS_V: MutS domain V C-terminus	Back alignment and domain information

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes	Back alignment and domain information

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes	Back alignment and domain information

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes	Back alignment and domain information

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes	Back alignment and domain information

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family	Back alignment and domain information

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes	Back alignment and domain information

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes	Back alignment and domain information

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes	Back alignment and domain information

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch	Back alignment and domain information

>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]	Back alignment and domain information

>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]	Back alignment and domain information

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes	Back alignment and domain information

>PF01624 MutS_I: MutS domain I C-terminus	Back alignment and domain information

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PRK13537 nodulation ABC transporter NodI; Provisional	Back alignment and domain information

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>PRK13536 nodulation factor exporter subunit NodI; Provisional	Back alignment and domain information

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit	Back alignment and domain information

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	Back alignment and domain information

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein	Back alignment and domain information

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)	Back alignment and domain information

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively	Back alignment and domain information

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin	Back alignment and domain information

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI	Back alignment and domain information

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane	Back alignment and domain information

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR02673 FtsE cell division ATP-binding protein FtsE	Back alignment and domain information

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup	Back alignment and domain information

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit	Back alignment and domain information

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance	Back alignment and domain information

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein	Back alignment and domain information

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit	Back alignment and domain information

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea	Back alignment and domain information

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity	Back alignment and domain information

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system	Back alignment and domain information

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA	Back alignment and domain information

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional	Back alignment and domain information

>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family	Back alignment and domain information

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids	Back alignment and domain information

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system	Back alignment and domain information

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine	Back alignment and domain information

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed	Back alignment and domain information

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds	Back alignment and domain information

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK	Back alignment and domain information

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport	Back alignment and domain information

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]	Back alignment and domain information

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional	Back alignment and domain information

>PRK10908 cell division protein FtsE; Provisional	Back alignment and domain information

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group	Back alignment and domain information

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively	Back alignment and domain information

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT	Back alignment and domain information

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake	Back alignment and domain information

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed	Back alignment and domain information

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids	Back alignment and domain information

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain	Back alignment and domain information

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea	Back alignment and domain information

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters	Back alignment and domain information

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional	Back alignment and domain information

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import	Back alignment and domain information

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE	Back alignment and domain information

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake	Back alignment and domain information

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional	Back alignment and domain information

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit	Back alignment and domain information

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient	Back alignment and domain information

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor	Back alignment and domain information

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment	Back alignment and domain information

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component	Back alignment and domain information

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13633 cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional	Back alignment and domain information

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport	Back alignment and domain information

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD	Back alignment and domain information

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter	Back alignment and domain information

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity	Back alignment and domain information

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP	Back alignment and domain information

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional	Back alignment and domain information

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D	Back alignment and domain information

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed	Back alignment and domain information

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR01978 sufC FeS assembly ATPase SufC	Back alignment and domain information

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13651 cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)	Back alignment and domain information

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA	Back alignment and domain information

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis	Back alignment and domain information

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export	Back alignment and domain information

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE	Back alignment and domain information

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein	Back alignment and domain information

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment	Back alignment and domain information

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional	Back alignment and domain information

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E	Back alignment and domain information

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family	Back alignment and domain information

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters	Back alignment and domain information

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional	Back alignment and domain information

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein	Back alignment and domain information

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]	Back alignment and domain information

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional	Back alignment and domain information

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional	Back alignment and domain information

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome	Back alignment and domain information

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins	Back alignment and domain information

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1	Back alignment and domain information

>PRK10762 D-ribose transporter ATP binding protein; Provisional	Back alignment and domain information

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export	Back alignment and domain information

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria	Back alignment and domain information

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional	Back alignment and domain information

>PRK03695 vitamin B12-transporter ATPase; Provisional	Back alignment and domain information

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors	Back alignment and domain information

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD	Back alignment and domain information

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional	Back alignment and domain information

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules	Back alignment and domain information

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK14237 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component	Back alignment and domain information

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional	Back alignment and domain information

>PRK09700 D-allose transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters	Back alignment and domain information

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13549 xylose transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional	Back alignment and domain information

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C	Back alignment and domain information

>PRK14242 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional	Back alignment and domain information

>cd03290 ABCC_SUR1_N The SUR domain 1	Back alignment and domain information

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL	Back alignment and domain information

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)	Back alignment and domain information

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB	Back alignment and domain information

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D	Back alignment and domain information

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK	Back alignment and domain information

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C	Back alignment and domain information

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional	Back alignment and domain information

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2	Back alignment and domain information

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed	Back alignment and domain information

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids	Back alignment and domain information

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14235 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13549 xylose transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03299 ABC_ModC_like Archeal protein closely related to ModC	Back alignment and domain information

>CHL00131 ycf16 sulfate ABC transporter protein; Validated	Back alignment and domain information

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR01257 rim_protein retinal-specific rim ABC transporter	Back alignment and domain information

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor	Back alignment and domain information

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2	Back alignment and domain information

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK09700 D-allose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14241 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional	Back alignment and domain information

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)	Back alignment and domain information

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>PRK14239 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14240 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR01257 rim_protein retinal-specific rim ABC transporter	Back alignment and domain information

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit	Back alignment and domain information

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth	Back alignment and domain information

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters	Back alignment and domain information

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional	Back alignment and domain information

>PRK10762 D-ribose transporter ATP binding protein; Provisional	Back alignment and domain information

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional	Back alignment and domain information

>PRK10261 glutathione transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03288 ABCC_SUR2 The SUR domain 2	Back alignment and domain information

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional	Back alignment and domain information

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10261 glutathione transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2	Back alignment and domain information

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional	Back alignment and domain information

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1	Back alignment and domain information

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13409 putative ATPase RIL; Provisional	Back alignment and domain information

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14236 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14238 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK15064 ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14243 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional	Back alignment and domain information

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	Back alignment and domain information

>PLN03211 ABC transporter G-25; Provisional	Back alignment and domain information

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>PRK10636 putative ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13409 putative ATPase RIL; Provisional	Back alignment and domain information

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family	Back alignment and domain information

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family	Back alignment and domain information

>PRK15064 ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional	Back alignment and domain information

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional	Back alignment and domain information

>PRK10636 putative ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03073 ABC transporter F family; Provisional	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>TIGR01192 chvA glucan exporter ATP-binding protein	Back alignment and domain information

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function	Back alignment and domain information

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter	Back alignment and domain information

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family	Back alignment and domain information

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA	Back alignment and domain information

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>PRK11147 ABC transporter ATPase component; Reviewed	Back alignment and domain information

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]	Back alignment and domain information

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>PRK11147 ABC transporter ATPase component; Reviewed	Back alignment and domain information

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein	Back alignment and domain information

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein	Back alignment and domain information

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein	Back alignment and domain information

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]	Back alignment and domain information

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>PLN03140 ABC transporter G family member; Provisional	Back alignment and domain information

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PLN03073 ABC transporter F family; Provisional	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein	Back alignment and domain information

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	Back alignment and domain information

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]	Back alignment and domain information

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]	Back alignment and domain information

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein	Back alignment and domain information

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>PLN03140 ABC transporter G family member; Provisional	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains	Back alignment and domain information

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>TIGR01070 mutS1 DNA mismatch repair protein MutS	Back alignment and domain information

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]	Back alignment and domain information

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	Back alignment and domain information

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>PRK05399 DNA mismatch repair protein MutS; Provisional	Back alignment and domain information

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	Back alignment and domain information

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms	Back alignment and domain information

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]	Back alignment and domain information

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	Back alignment and domain information

>TIGR00630 uvra excinuclease ABC, A subunit	Back alignment and domain information

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]	Back alignment and domain information

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed	Back alignment and domain information

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]	Back alignment and domain information

>PRK00635 excinuclease ABC subunit A; Provisional	Back alignment and domain information

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]	Back alignment and domain information

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]	Back alignment and domain information

>PF05192 MutS_III: MutS domain III C-terminus	Back alignment and domain information

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]	Back alignment and domain information

>COG3910 Predicted ATPase [General function prediction only]	Back alignment and domain information

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]	Back alignment and domain information

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]	Back alignment and domain information

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []	Back alignment and domain information

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK00635 excinuclease ABC subunit A; Provisional	Back alignment and domain information

>TIGR02858 spore_III_AA stage III sporulation protein AA	Back alignment and domain information

>PRK08533 flagellar accessory protein FlaH; Reviewed	Back alignment and domain information

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>PF05192 MutS_III: MutS domain III C-terminus	Back alignment and domain information

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A	Back alignment and domain information

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR00630 uvra excinuclease ABC, A subunit	Back alignment and domain information

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed	Back alignment and domain information

>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]	Back alignment and domain information

>PRK13695 putative NTPase; Provisional	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK06067 flagellar accessory protein FlaH; Validated	Back alignment and domain information

>cd01131 PilT Pilus retraction ATPase PilT	Back alignment and domain information

>PRK07721 fliI flagellum-specific ATP synthase; Validated	Back alignment and domain information

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family	Back alignment and domain information

>PRK10869 recombination and repair protein; Provisional	Back alignment and domain information

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]	Back alignment and domain information

>cd01125 repA Hexameric Replicative Helicase RepA	Back alignment and domain information

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PRK06793 fliI flagellum-specific ATP synthase; Validated	Back alignment and domain information

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	Back alignment and domain information

>PTZ00132 GTP-binding nuclear protein Ran; Provisional	Back alignment and domain information

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>TIGR00618 sbcc exonuclease SbcC	Back alignment and domain information

>PRK09183 transposase/IS protein; Provisional	Back alignment and domain information

>TIGR01420 pilT_fam pilus retraction protein PilT	Back alignment and domain information

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PRK13830 conjugal transfer protein TrbE; Provisional	Back alignment and domain information

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF13555 AAA_29: P-loop containing region of AAA domain	Back alignment and domain information

>PRK10246 exonuclease subunit SbcC; Provisional	Back alignment and domain information

>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome	Back alignment and domain information

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>cd01121 Sms Sms (bacterial radA) DNA repair protein	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00416 sms DNA repair protein RadA	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK13898 type IV secretion system ATPase VirB4; Provisional	Back alignment and domain information

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

Homologous Structure Templates