Citrus Sinensis ID: 001627
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1042 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W4N3 | 961 | Ubiquitin carboxyl-termin | yes | no | 0.639 | 0.693 | 0.474 | 1e-161 | |
| Q9FPT5 | 1083 | Ubiquitin carboxyl-termin | no | no | 0.611 | 0.588 | 0.374 | 1e-108 | |
| Q0VA64 | 864 | Ubiquitin carboxyl-termin | yes | no | 0.319 | 0.385 | 0.306 | 1e-41 | |
| Q6PAW2 | 901 | Ubiquitin carboxyl-termin | N/A | no | 0.324 | 0.375 | 0.308 | 8e-39 | |
| Q2KJ09 | 826 | Ubiquitin carboxyl-termin | yes | no | 0.306 | 0.386 | 0.297 | 9e-39 | |
| Q99LG0 | 825 | Ubiquitin carboxyl-termin | yes | no | 0.306 | 0.386 | 0.292 | 3e-38 | |
| Q08DA3 | 826 | Ubiquitin carboxyl-termin | yes | no | 0.296 | 0.374 | 0.292 | 5e-38 | |
| Q4R6X7 | 826 | Ubiquitin carboxyl-termin | N/A | no | 0.307 | 0.387 | 0.289 | 2e-36 | |
| Q9Y5T5 | 823 | Ubiquitin carboxyl-termin | yes | no | 0.307 | 0.388 | 0.289 | 9e-36 | |
| A8HAL1 | 815 | Ubiquitin carboxyl-termin | yes | no | 0.311 | 0.398 | 0.298 | 9e-34 |
| >sp|Q8W4N3|UBP2_ARATH Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana GN=UBP2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 570 bits (1469), Expect = e-161, Method: Compositional matrix adjust.
Identities = 356/750 (47%), Positives = 457/750 (60%), Gaps = 84/750 (11%)
Query: 41 VPVMKERKPCPHLDKGIDSDKISVKIGSSDPIRCEDCREGVGDRRGKKGKGKHGKKKGSS 100
V +KE + C H DK ++ +K+ KI SS I+C +C EGV +RG K KG GKK SS
Sbjct: 41 VKAVKETQACVHFDKALNLEKVLDKIKSSRQIKCAECNEGVYGKRGTKAKGSKGKKDFSS 100
Query: 101 ---LVDSKAIWVCLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLVIQWENPHLRWCFPC 157
++KAIW+CL CG Y CGGVGLP PQSHV+RH+R TRH LVIQWENP LRWCFPC
Sbjct: 101 SDPKSNNKAIWLCLECGCYVCGGVGLPNGPQSHVLRHSRVTRHRLVIQWENPQLRWCFPC 160
Query: 158 NTLIPVEKTEENGENKDALSEVVKLIKGRS-TEISSVDVEDAWFGSGNVNSEIKSESTVV 216
L+PVEK E+NGE KD LSEVVKLIKGRS ++S D+ED GSG++ S+IK E V
Sbjct: 161 QLLLPVEK-EDNGEKKDVLSEVVKLIKGRSLNNLASSDIEDQCSGSGSITSDIKLEGAVT 219
Query: 217 SGSDLDGNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFL--NAELTFGPLTIALKK 274
SD++ YVVRGL NLGNTCFFNS+MQNLL++ +L+D+FL N GPL +L+K
Sbjct: 220 --SDIEARDGYVVRGLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGPLASSLRK 277
Query: 275 LFAETKPETGLRNVINPRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKR 334
LF ETKPE GL++VINPR+FFG CSKAPQF+GY QHDSHELLRCLLD L +EE A RK+
Sbjct: 278 LFTETKPEAGLKSVINPRAFFGSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKK 337
Query: 335 NSPSEGNGISSN--QGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLPVPTKKAP 392
G+S N + ++ VFGG+ +S V C+ECGHSS VYEPFLDLSLPVP KK+P
Sbjct: 338 ------RGVSDNDEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSLPVPFKKSP 391
Query: 393 SKKTQPASRAKKTKLPPKKSGRIRAKGTKDTHAVTTQSISNLSISSKSQSLT-------E 445
KK QP SRAKK KLPPK+ + +K +K + + +S L+ S KS ++T
Sbjct: 392 PKKPQPVSRAKKAKLPPKRVPKNVSKVSKVSKVLPGMVLSELNSSGKSMAVTADSDTSCS 451
Query: 446 STAPLSENVVSSSGGSQLLDSVGSPTVATQCGSALQNVPADPLPQHDQVIDIPVEQTVAS 505
S APL V + +P+V T L N A Q+
Sbjct: 452 SLAPLDNGPV-----------LETPSVLT-----LDNNQASE----------SASQSDTG 485
Query: 506 LDDFWLDYIEPQTTGDVLDSTWQKSDVSVIQDSTDFAWLDYI--EPETISDEH----GLT 559
D WLD+I P+T+GD + Q+ + D+ A ++ I P +++ T
Sbjct: 486 FDGSWLDFIGPETSGDETNLDMQEDGI----DNVITAEVNQIVPSPNIVANSSVSSGDQT 541
Query: 560 LENNDVLFVQDSGE-----------------QDEVSDDSLINS--NQIPLLDSKPNLKAD 600
LE N +QD E DE S I++ +Q + P +
Sbjct: 542 LEGNTERLMQDYEEIAKAEANLDEKDVQAMQSDECPATSGISAEFSQASCIGCDPGIGES 601
Query: 601 SSSGDA-GEDELPLVVQDSEVILLPYNEEISTTAEKISGEGEASSSVVGCRQE--EVDFD 657
SSS + E+ELPLVV DS+++ +PY +EIS + + GE EASSS V E DF
Sbjct: 602 SSSVNPWDEEELPLVVADSQILYMPY-KEISCNDKSVEGECEASSSFVTGDHEPQNSDFV 660
Query: 658 GFGDLFNEPETAIGPVPRPSSGTESVGSGFVVGNSSDSDPDEVDDSDSPVSVESCLVHFI 717
FG LF+EPET GPV P S E+ G GF + SS+SDP+E+DDSD PVSVE CL HF
Sbjct: 661 DFGGLFDEPETTEGPVFGPPSKAEASGVGF-MAFSSESDPEEIDDSDLPVSVERCLGHFT 719
Query: 718 KPELLTDDNAWDCESCSKTLQRQKLEALKR 747
K E+L+DDNAW+CE+CSK L+ Q+L ++
Sbjct: 720 KHEILSDDNAWNCENCSKNLKLQRLREKRK 749
|
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Is involved in resistance to the arginine analog canavanine (CAN). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|Q9FPT5|UBP1_ARATH Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana GN=UBP1 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q0VA64|UBP16_XENTR Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus tropicalis GN=usp16 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q6PAW2|UBP16_XENLA Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus laevis GN=usp16 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q2KJ09|UBP16_RAT Ubiquitin carboxyl-terminal hydrolase 16 OS=Rattus norvegicus GN=Usp16 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q99LG0|UBP16_MOUSE Ubiquitin carboxyl-terminal hydrolase 16 OS=Mus musculus GN=Usp16 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q08DA3|UBP16_BOVIN Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos taurus GN=USP16 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q4R6X7|UBP16_MACFA Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca fascicularis GN=USP16 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9Y5T5|UBP16_HUMAN Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo sapiens GN=USP16 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|A8HAL1|UBP16_DANRE Ubiquitin carboxyl-terminal hydrolase 16 OS=Danio rerio GN=usp16 PE=2 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1042 | ||||||
| 255554092 | 1006 | conserved hypothetical protein [Ricinus | 0.953 | 0.988 | 0.588 | 0.0 | |
| 224140825 | 910 | predicted protein [Populus trichocarpa] | 0.866 | 0.992 | 0.515 | 0.0 | |
| 147805668 | 1036 | hypothetical protein VITISV_042515 [Viti | 0.953 | 0.959 | 0.521 | 0.0 | |
| 356569135 | 980 | PREDICTED: ubiquitin carboxyl-terminal h | 0.929 | 0.988 | 0.504 | 0.0 | |
| 356538039 | 1052 | PREDICTED: ubiquitin carboxyl-terminal h | 0.932 | 0.923 | 0.512 | 0.0 | |
| 449433181 | 980 | PREDICTED: ubiquitin carboxyl-terminal h | 0.919 | 0.977 | 0.479 | 0.0 | |
| 357462669 | 1070 | Ubiquitin carboxyl-terminal hydrolase [M | 0.941 | 0.916 | 0.465 | 0.0 | |
| 224060379 | 925 | predicted protein [Populus trichocarpa] | 0.701 | 0.790 | 0.552 | 0.0 | |
| 449487624 | 1225 | PREDICTED: LOW QUALITY PROTEIN: ubiquiti | 0.904 | 0.769 | 0.446 | 0.0 | |
| 359477947 | 950 | PREDICTED: ubiquitin carboxyl-terminal h | 0.780 | 0.855 | 0.496 | 0.0 |
| >gi|255554092|ref|XP_002518086.1| conserved hypothetical protein [Ricinus communis] gi|223542682|gb|EEF44219.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1134 bits (2932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/1054 (58%), Positives = 758/1054 (71%), Gaps = 60/1054 (5%)
Query: 1 MGKRAERKSRAAAAKQKQAAARAPKSVLQQSKPVESTDD--GVPVMKERKPCPHLDKGID 58
MGKR ++KSR+ K+K+ + +PK QQ+ P ++ V V+KERK C HL KG +
Sbjct: 1 MGKRVKKKSRSLQ-KEKRVSTHSPKVAPQQTTPSVDVNERITVAVVKERKQCVHLGKGFN 59
Query: 59 SDKISVKIGSSDPIRCEDCREGVGDRRGKKGKGKHGKKKGS--SLVDSKAIWVCLGCGHY 116
+ ++VK+GSSDP++CEDCREGV DRRG KGKGKHGKKKGS S +SKAIWVCL CGH+
Sbjct: 60 LNNLTVKLGSSDPLKCEDCREGVADRRGAKGKGKHGKKKGSVDSKSESKAIWVCLECGHF 119
Query: 117 ACGGVGLPTTPQSHVVRHARQTRHPLVIQWENPHLRWCFPCNTLIPVEKTEENGENKDAL 176
ACGGVGLPTTPQSHVVRHARQTRHPL+IQWENPHLRWCFPCNTLIPVE TEENGE KDAL
Sbjct: 120 ACGGVGLPTTPQSHVVRHARQTRHPLIIQWENPHLRWCFPCNTLIPVEMTEENGEKKDAL 179
Query: 177 SEVVKLIKGRSTEISSVDVEDAWFGSGNVNSEIKSESTVVSGSDLDGNACYVVRGLANLG 236
+VV LIK RS++ S VDVED WFG G+V SEIK+E T++S ++ G + Y VRGL NLG
Sbjct: 180 LDVVNLIKTRSSQRSLVDVEDVWFGGGSVASEIKAEGTILSSTE--GKSGYTVRGLVNLG 237
Query: 237 NTCFFNSVMQNLLAMSQLQDYFLNAELTFGPLTIALKKLFAETKPETGLRNVINPRSFFG 296
NTCFFNSVMQNLLA+ +L+D+F N +++FGPLTIALKKLF ETK ETG++NVI+PRSFFG
Sbjct: 238 NTCFFNSVMQNLLAIDKLRDFFFNQDISFGPLTIALKKLFTETKQETGIKNVISPRSFFG 297
Query: 297 CICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVF 356
ICSKAPQF+GYQQ DSHELLR LLDGL SEELA RK+ + S+ NGISS GP FVD +F
Sbjct: 298 SICSKAPQFRGYQQQDSHELLRYLLDGLSSEELAVRKQVNASKENGISSKHGPTFVDVLF 357
Query: 357 GGQIASTVRCVECGHSSTVYEPFLDLSLPVPTKKAPSKKTQPASRAKKTKLPPKKSGRIR 416
GG+I STV C+EC +SSTVYEPFLDLSLPVPTKK +KK QPASR+KKTKLP K+ GR+R
Sbjct: 358 GGRICSTVSCIECEYSSTVYEPFLDLSLPVPTKKPATKKAQPASRSKKTKLPLKRGGRVR 417
Query: 417 AKGTKDTHAVTTQSISNLSISSKSQSLTESTAPLSENVVSSSGGSQLLDSVGSPTVATQC 476
AK KDT AV QS SN S+SS+S T S P +EN ++SSG L+SV TVA +
Sbjct: 418 AKANKDTDAVPAQSSSNPSVSSESPCQTLSIIPHAENSMASSGDVVGLESVCLTTVADKS 477
Query: 477 GSALQNVPADPLPQHDQVIDIPVEQTVASLDDF-WLDYIEPQTTGDVLDSTWQKSDVSVI 535
G A QN P +++QV + VEQT S DDF W+DY+ +T D
Sbjct: 478 GLASQNFSTIPDTENEQVTEGTVEQTTNSFDDFSWMDYLGQETVTD-------------- 523
Query: 536 QDSTDFAWLDYIEPETISDEHGLTLENNDVLFVQDSGEQDEVSDDSLINSNQIPLLDSKP 595
EH LTL+N D Q S ++ + +D ++ S+Q+ +D +P
Sbjct: 524 -------------------EHDLTLQNKDASTSQFS--ENIIPNDDIMESSQVSPVDGEP 562
Query: 596 NLKADSSSGDAGEDELPLVVQDSEVILLPYNEEISTTAEKISGEGEASSSVVGCRQEEVD 655
NLK +SS + E+E+ V+ SEV+LLPY EE + + G+ EA SSVVGC Q+E D
Sbjct: 563 NLKLESSV-NPWEEEVLAQVKSSEVLLLPYKEESVMDGDVMKGQAEA-SSVVGCGQDEAD 620
Query: 656 FDGFGDLFNEPETAIGPVPRPSSGTESVGSGFVVGNSSDSDPDEVDDSDSPVSVESCLVH 715
FDGFGDLFNEPE + GPV PS + +GF+ N+S+SDPDEVD+SDSPVS+ESCL H
Sbjct: 621 FDGFGDLFNEPEVSSGPVSGPSLANGTAETGFIAANNSESDPDEVDNSDSPVSIESCLAH 680
Query: 716 FIKPELLTDDNAWDCESCSKTLQRQKLEALKRRAKLASKPLINGGETSNQNDIQGSSLTD 775
FIKPELL++DNAW+CE+CSKTLQRQ+LEA K++AK + +I GG+ IQ S +
Sbjct: 681 FIKPELLSNDNAWECENCSKTLQRQRLEA-KKKAKTTVETMIIGGKA----QIQSPSSLE 735
Query: 776 VDSLC-------NGDAKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQ 828
D+LC NG T+ N+ SLVS D NQ+ + ESG T+++NP Q
Sbjct: 736 KDNLCSIEVKDHNGGINTDTCFNSSGASLVSDDENIDRTNQNYIKTESGQTDELNPIETQ 795
Query: 829 REKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDSQL 888
++ K ++ A+ QS SS SCSQES + GS SV +S+GY+ K DSQ
Sbjct: 796 GDEQKGEMTVALMEQSLSSSTYKSCSQESFSCPVVGSSSVGEPSSTGYATAKDQMGDSQF 855
Query: 889 VAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGH 948
+GNC ++E EE S+ VKVKRDATKRVL++KAPPILTIHLKRFSQDARGRLSKLNGH
Sbjct: 856 -SGNCGAKED--EEGTSRKVKVKRDATKRVLVDKAPPILTIHLKRFSQDARGRLSKLNGH 912
Query: 949 VNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKES 1008
VNF ++++LRPYMDP CTD + Y YRL+GVVEHLGTMRGGHYVAYVRGG K+K KA+ ES
Sbjct: 913 VNFGDVLDLRPYMDPRCTDREKYVYRLLGVVEHLGTMRGGHYVAYVRGGQKSKGKAENES 972
Query: 1009 VGGVWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042
VWYHASD YVREVSLEEVLRCEAYILFYEKI
Sbjct: 973 GSSVWYHASDAYVREVSLEEVLRCEAYILFYEKI 1006
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140825|ref|XP_002323779.1| predicted protein [Populus trichocarpa] gi|222866781|gb|EEF03912.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|147805668|emb|CAN67276.1| hypothetical protein VITISV_042515 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356569135|ref|XP_003552761.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356538039|ref|XP_003537512.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449433181|ref|XP_004134376.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357462669|ref|XP_003601616.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355490664|gb|AES71867.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|224060379|ref|XP_002300170.1| predicted protein [Populus trichocarpa] gi|222847428|gb|EEE84975.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449487624|ref|XP_004157719.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359477947|ref|XP_002265806.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.921 |
| 3rd Layer | 3.4.19.12 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1042 | |||
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 6e-53 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 2e-41 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 5e-40 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 4e-34 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 1e-32 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 2e-29 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 1e-28 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 1e-27 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 3e-24 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 9e-24 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 2e-23 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 7e-23 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-18 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 6e-18 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 4e-16 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 5e-16 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 8e-16 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 9e-16 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 1e-14 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 3e-14 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 2e-13 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 3e-13 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 3e-13 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 5e-13 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 6e-13 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 9e-13 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 9e-12 | |
| pfam02148 | 63 | pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas | 9e-11 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 6e-10 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 3e-09 | |
| smart00290 | 50 | smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal H | 3e-09 | |
| cd02670 | 241 | cd02670, Peptidase_C19N, A subfamily of Peptidase | 3e-09 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 5e-09 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 9e-09 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 2e-08 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 6e-08 | |
| cd02673 | 245 | cd02673, Peptidase_C19Q, A subfamily of Peptidase | 7e-07 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 8e-07 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 1e-06 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 1e-06 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 1e-05 | |
| cd02665 | 228 | cd02665, Peptidase_C19I, A subfamily of Peptidase | 4e-05 | |
| cd02666 | 343 | cd02666, Peptidase_C19J, A subfamily of Peptidase | 9e-05 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 2e-04 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 6e-04 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 0.002 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 0.002 | |
| cd01291 | 87 | cd01291, PseudoU_synth, Pseudouridine synthases ca | 0.003 |
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 6e-53
Identities = 74/164 (45%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 893 CESEESKVEEI---NSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHV 949
C + ++VE + N + A K+ LI+K PP+L IHLKRF Q L K++ HV
Sbjct: 116 CLKQFTEVEILEGNNKFACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHV 175
Query: 950 NFSEIINLRPYMDPGCT---DHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKN------ 1000
+F EI++L P+ DP C D + YRL GVVEH GTMR GHYVAYV+ P
Sbjct: 176 SFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDL 235
Query: 1001 ----KVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYE 1040
+ G WY+ SD VREVSLEEVL+ EAY+LFYE
Sbjct: 236 TKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
|
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279 |
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|211324 cd01291, PseudoU_synth, Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1042 | |||
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.98 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 99.97 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.95 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.93 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.93 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.89 | |
| PF02148 | 63 | zf-UBP: Zn-finger in ubiquitin-hydrolases and othe | 99.47 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.31 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 98.9 | |
| smart00290 | 50 | ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like | 98.66 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 97.05 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 96.85 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.76 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 96.54 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 96.51 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 96.41 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 96.37 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 96.3 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 96.29 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 96.22 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 96.07 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 96.02 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 96.01 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 95.9 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 95.73 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 95.68 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 95.61 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 95.54 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 95.41 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 95.33 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 95.07 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 94.73 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 94.7 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 94.57 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 91.51 | |
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 88.43 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 84.16 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 81.66 |
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-85 Score=750.77 Aligned_cols=772 Identities=37% Similarity=0.546 Sum_probs=486.7
Q ss_pred cCCCCCCC-CCCccCCCChhhhhcccCCCCCCccccccCCcCCCCCCCCCCCCCcccCCCccCCCCeEEeCccCCcccCC
Q 001627 42 PVMKERKP-CPHLDKGIDSDKISVKIGSSDPIRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKAIWVCLGCGHYACGG 120 (1042)
Q Consensus 42 ~~~~~~~~-CpHl~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~r~~~~~~~~~~k~~~~~~~~~~lw~CL~Cg~~~Cgr 120 (1042)
.++++... |.|+.|++++..+++.|++..+..|.+|...+..++|+ .. ..-.....||+||.||+++|||
T Consensus 36 ~t~t~~~~~C~Hi~Kav~l~~lk~~iks~~~~~C~eC~e~~~~k~g~----s~-----~~~~~~~~iWLCLkCG~q~CG~ 106 (877)
T KOG1873|consen 36 KTPTETPVECQHIKKAVDLSHLKRAIKSLLWIKCSECNEEVKVKDGG----SS-----DQFEFDNAIWLCLKCGYQGCGR 106 (877)
T ss_pred cCCCCCccccchHHhhhcHHHHHHHHHHHHHHHHHHhhhcceeccCC----Cc-----cccccccceeeecccCCeeeCC
Confidence 33334444 99999999999999999999889999999875544431 00 0111127899999999999999
Q ss_pred CCCCCCCCcccccccccC---CCcEEEeccCCCeEEEcCCCC-ccccccccccccchhhHHHHHHHhccccccccccccc
Q 001627 121 VGLPTTPQSHVVRHARQT---RHPLVIQWENPHLRWCFPCNT-LIPVEKTEENGENKDALSEVVKLIKGRSTEISSVDVE 196 (1042)
Q Consensus 121 ~~~~~~~~~Ha~~H~~~~---~H~v~~~l~~~~~v~Cy~Cd~-~v~~~~l~~~~~~~~~l~~~i~~~~~~~~~~~~~~~e 196 (1042)
. +...||+.||+.. .|+|+|++.+ +.+|||.||. .+...+. ..+.+.++++...-...++....
T Consensus 107 ~----~~~~halkH~~~~r~~~Hclvin~~n-~~~WCy~Cd~kl~~~~~k-------n~l~e~vd~l~k~a~~~~~~~sp 174 (877)
T KOG1873|consen 107 N----SESQHALKHFLTPRSEPHCLVINLIN-WLIWCYSCDAKLVPFDKK-------NLLGEKVDLLIKVASKTSLTRSP 174 (877)
T ss_pred C----cccchhhhhhcccCCCCeeEEEEeee-eeeEEEeccchhccccch-------hHHHHHHHHHHHHHhccccccCC
Confidence 5 4689999999875 6999999998 8899999999 5554432 12333333332221110100000
Q ss_pred ccccCCCCcccccccccccccCCCCCCCCCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccCC------------
Q 001627 197 DAWFGSGNVNSEIKSESTVVSGSDLDGNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT------------ 264 (1042)
Q Consensus 197 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~------------ 264 (1042)
.+.. .+...|..+.+.-...-.+..+.++.++||.|||||||+|||||+|+.+|.||+.|.....+
T Consensus 175 n~~~--~s~~~ek~e~~ski~~ggie~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s 252 (877)
T KOG1873|consen 175 NTLK--ISSEEEKLEKGSKIKKGGIEKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDS 252 (877)
T ss_pred Cccc--chhhHHhhhhcccccccCccccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCcccc
Confidence 0000 00000111111101112245667788999999999999999999999999999999864332
Q ss_pred -----------CChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 001627 265 -----------FGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRK 333 (1042)
Q Consensus 265 -----------~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k 333 (1042)
.++++.+|..| .+|... .+..|+|+.|+..++...|+|++|+||||||+|++|||.|..|+.+.++
T Consensus 253 ~l~~L~~el~~~g~lt~al~~~-~e~~e~--~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~k 329 (877)
T KOG1873|consen 253 SLSPLFSELSSPGPLTYALANL-LEMSET--TKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRK 329 (877)
T ss_pred chhhHHHhccCCcchhHHHHhh-hhhhhc--cCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHH
Confidence 24666666663 333332 3789999999999999999999999999999999999999999877665
Q ss_pred CCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeEEeecCCCCCCCCCCchhhhhhcccCCCCCCC
Q 001627 334 RNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLPVPTKKAPSKKTQPASRAKKTKLPPKKSG 413 (1042)
Q Consensus 334 ~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL~Ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1042)
+. |...|+|...+.+.|+.|++.+..+++|.+++|++|.........++..++...- ...
T Consensus 330 k~----------------Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~~vs--s~~-- 389 (877)
T KOG1873|consen 330 KN----------------ILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPLSFNGPLTSQIECQACDVS--SVH-- 389 (877)
T ss_pred Hh----------------HHHhhCccccchhhhhhccchhhcccccccCCcccccccCCCcccchhhhcccee--ccc--
Confidence 42 6678999999999999999999999999999999997776666555554443310 000
Q ss_pred ccccccccccccccccccc----------------cccccccccccccccCCCccccccCCCCCccccccCCCccccccC
Q 001627 414 RIRAKGTKDTHAVTTQSIS----------------NLSISSKSQSLTESTAPLSENVVSSSGGSQLLDSVGSPTVATQCG 477 (1042)
Q Consensus 414 ~~~~k~~~~~~~~p~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 477 (1042)
...-......+|.++.+ +.+++..++.+.+....+..++.+++ ++...+ -.++...+..
T Consensus 390 --~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~~~~t~dn-~~~~k~--qS~~~~~~S~ 464 (877)
T KOG1873|consen 390 --ESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELLDSLTDDN-DQVFKG--QSDVAGTNSK 464 (877)
T ss_pred --hhhcccccccccCccccccCCCcccceeccccccCCccccCcccCcccccccccccccC-chhhcc--ccccccCccc
Confidence 00001111222222111 11122222222221111111111111 000000 0000000000
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccccccccCCCCcCcccccccccCccccccccccccccccCCCCccccccc
Q 001627 478 SALQNVPADPLPQHDQVIDIPVEQTVASLDDFWLDYIEPQTTGDVLDSTWQKSDVSVIQDSTDFAWLDYIEPETISDEHG 557 (1042)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1042)
+ .++ ....+..+.-+..-....+.. ...-|.+ ...-.+.+.+.+-.-++-.
T Consensus 465 ~-~~~------~~k~~a~s~n~n~~~~g~~~~--------~a~~v~~--------------~~~~~~p~gD~e~s~Ad~~ 515 (877)
T KOG1873|consen 465 E-DQN------KAKNQAKSQNLNEASQGKDNE--------KALQVND--------------RQLDILPLGDGELSKADMS 515 (877)
T ss_pred c-ccc------hhhhhhhhhccccccccccch--------hhhhhch--------------hhccccccCcccccccccc
Confidence 0 000 000000000000000001000 0000000 0011223322111000011
Q ss_pred cccccccccccccCCCCcccccc-cccc-ccCCCcCC---CCCCCcCCCCCCCCCCCCc-ccccccceeeccC----ccc
Q 001627 558 LTLENNDVLFVQDSGEQDEVSDD-SLIN-SNQIPLLD---SKPNLKADSSSGDAGEDEL-PLVVQDSEVILLP----YNE 627 (1042)
Q Consensus 558 ~~~~~~~~~~~~~~~d~~~~~~~-~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p----~~~ 627 (1042)
++..++......-.+-.++.-.. .+.+ +......+ ..+.....+.+.++|+.+- +..+..+.....| ++.
T Consensus 516 lde~n~~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~ 595 (877)
T KOG1873|consen 516 LDEANMDEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKI 595 (877)
T ss_pred cccccccccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceee
Confidence 11111111111101111111110 0111 11112221 2233344555666665555 5555566777778 787
Q ss_pred ccccccccc-cCCcccccccccCCCc-cc-cccCCCC-CCCCCccccCCCCCCCCCccccCCcceeccCCCCCCCCCCCC
Q 001627 628 EISTTAEKI-SGEGEASSSVVGCRQE-EV-DFDGFGD-LFNEPETAIGPVPRPSSGTESVGSGFVVGNSSDSDPDEVDDS 703 (1042)
Q Consensus 628 ~~~~~~~~~-~~~~~~~~~~~~~~~~-~~-d~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~d~~~~~ 703 (1042)
-..+..++. .|.++.|+++.-++.+ .+ |++.|+. +|+++.....++++|.+....++.+|. +.+|..++.+-+++
T Consensus 596 vs~n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~-a~~S~s~~~~~~~~ 674 (877)
T KOG1873|consen 596 VSGNDKTVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFD-AFSSISDPEVLDSS 674 (877)
T ss_pred eccccccccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCcc-ccccccChhhccCC
Confidence 777777775 6788889999988888 55 9999996 999999999999999999999999997 78899999999999
Q ss_pred CCCcCHHHHHhhhccccccCCCCcccCccchhHHHHHHHHHHHHhhhhcCCcccCCCCCCCCccccCCccccccccccCC
Q 001627 704 DSPVSVESCLVHFIKPELLTDDNAWDCESCSKTLQRQKLEALKRRAKLASKPLINGGETSNQNDIQGSSLTDVDSLCNGD 783 (1042)
Q Consensus 704 ~s~~sie~cL~~~~~~E~l~~~~~~~Ce~Cs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 783 (1042)
+.++||++||..|++-|+|+|+|+|.||||++.+..++ .++++ .++
T Consensus 675 D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~-r~k~~---------~n~------------------------ 720 (877)
T KOG1873|consen 675 DEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQR-REKRG---------LNE------------------------ 720 (877)
T ss_pred CCCccHHHHHHhhhhhhhcccccchhhhhhhccccccc-hhhcc---------CCC------------------------
Confidence 99999999999999999999999999999999665543 11110 011
Q ss_pred CCCCCCccccccccccccCCCCCCCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccc
Q 001627 784 AKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDE 863 (1042)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~ 863 (1042)
|+.-..|+++
T Consensus 721 ---~~sk~s~~es------------------------------------------------------------------- 730 (877)
T KOG1873|consen 721 ---DNSKYSFNES------------------------------------------------------------------- 730 (877)
T ss_pred ---Ccccccccch-------------------------------------------------------------------
Confidence 0000000000
Q ss_pred eeeeccCCCCCCCcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccc
Q 001627 864 GSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLS 943 (1042)
Q Consensus 864 l~~~l~~~~~~~~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~ 943 (1042)
++ +..-|+|++.|..+||||+||||||..+..|+..
T Consensus 731 --------------------------------------~~------~~t~akk~~li~~aPpVltihlKrf~q~~~~~~~ 766 (877)
T KOG1873|consen 731 --------------------------------------EY------RNTYAKKKVLINKAPPVLTIHLKRFFQDIRGRLS 766 (877)
T ss_pred --------------------------------------hh------hhhhhheeeecccCCceeeehHhhhhhhhhchhh
Confidence 00 1133889999999999999999999999888899
Q ss_pred cccceeecccccccCCCCCCCCCC---CCCcceEEEEEEEEeCccCCCeEEEEEECCCCCc-------cc--cccccCCC
Q 001627 944 KLNGHVNFSEIINLRPYMDPGCTD---HDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNK-------VK--AKKESVGG 1011 (1042)
Q Consensus 944 Ki~~~V~fP~~LdL~~~~~~~~~~---~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~-------~~--~~~~~~~~ 1011 (1042)
|++.+|.|++.+||.+||...... .....|+|+|||.|.|++.+||||+|+|...... .. .+.....+
T Consensus 767 k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~~~~~ 846 (877)
T KOG1873|consen 767 KLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSKDFESDAGIPSG 846 (877)
T ss_pred cccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCccccccchhccCCCCc
Confidence 999999999999999998655443 2445899999999999999999999999765421 01 12225689
Q ss_pred eEEEEcCceeeeechhhhcCCCcEEEEEEEC
Q 001627 1012 VWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042 (1042)
Q Consensus 1012 ~W~~fnD~~V~~vs~~ev~~~~aYiLfYeRi 1042 (1042)
+||++.|.+|+++++++|+..+|||||||||
T Consensus 847 ~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 847 RWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ceEEecchheecccHHHHhhhhhhhhheecC
Confidence 9999999999999999999999999999998
|
|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1042 | ||||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 5e-20 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 1e-11 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 6e-20 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 2e-11 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 6e-20 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 2e-11 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 7e-19 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 2e-11 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 1e-16 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 5e-10 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 7e-15 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 8e-15 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 8e-15 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 4e-14 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 2e-10 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 4e-14 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 3e-06 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 4e-14 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 3e-06 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 4e-14 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 2e-06 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 1e-12 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 2e-10 | ||
| 2f1z_A | 522 | Crystal Structure Of Hausp Length = 522 | 5e-06 | ||
| 2f1z_A | 522 | Crystal Structure Of Hausp Length = 522 | 7e-04 | ||
| 1nbf_A | 353 | Crystal Structure Of A Ubp-Family Deubiquitinating | 1e-05 | ||
| 1nb8_A | 353 | Structure Of The Catalytic Domain Of Usp7 (Hausp) L | 1e-04 |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
|
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 | Back alignment and structure |
| >pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 | Back alignment and structure |
| >pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 | Back alignment and structure |
| >pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 7e-43
Identities = 71/361 (19%), Positives = 119/361 (32%), Gaps = 68/361 (18%)
Query: 49 PCPHLDKGIDSDKISVKIGSSDPIRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKAIW 108
CPH+ + ++K + + C R + K+ K ++S A +
Sbjct: 8 ICPHIQQVFQNEKSKDGVLKT----CNAARYILNHSVPKEKFLNTMKCGTCHEINSGATF 63
Query: 109 VCLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLVIQWENPHLRWCFPCNTLIPVEKTEE 168
+CL CG C SH + H++Q H I N L +CF C I
Sbjct: 64 MCLQCGFCGCWN-------HSHFLSHSKQIGHIFGINSNNGLL-FCFKCEDYIGNIDLIN 115
Query: 169 NGENKDALSEVVKLIKGRSTEISSVDVEDAWFGSGNVNSEIKSESTVVSGSDLDGNACYV 228
+ ++ +++ V S DG
Sbjct: 116 D------------------------------AILAKYWDDVCTKTMVPSMERRDG----- 140
Query: 229 VRGLANLGNTCFFNSVMQNLLAMSQLQDYFL--------NAELTFGPLTIALKKLFAE-- 278
+ GL N+G+TCF +S++Q L+ + + + AL K+ E
Sbjct: 141 LSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELY 200
Query: 279 --------TKPETGLRNVINPRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELA 330
+ T C GY Q D+HE + +++ + +
Sbjct: 201 GALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVL 260
Query: 331 FRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGH-SSTVYEPFLDLSLPVPTK 389
+ V VF G + S++ C C + S T +PFLDLSL + K
Sbjct: 261 DLPNAKEVSRANNKQCEC--IVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDK 318
Query: 390 K 390
K
Sbjct: 319 K 319
|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109 | Back alignment and structure |
|---|
| >2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Length = 102 | Back alignment and structure |
|---|
| >2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1042 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 3e-26 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 1e-22 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 2e-23 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 7e-16 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 1e-21 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 3e-21 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 3e-18 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-16 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 4e-17 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 6e-16 | |
| d2uzga1 | 95 | g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy | 4e-12 | |
| d2idaa1 | 102 | g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {R | 5e-11 | |
| d2g45a1 | 113 | g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h | 1e-08 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (272), Expect = 3e-26
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 909 KVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDPGCTDH 968
+ +RD+ K++ I K PP+L +HLKRFS D R + E ++L Y+ +
Sbjct: 228 RARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGP--KN 285
Query: 969 DNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEE 1028
+ Y L V H G + GGHY AY + + + W+ D V ++S+
Sbjct: 286 NLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQR-----------WFKFDDHEVSDISVSS 334
Query: 1029 VLRCEAYILFYEKI 1042
V AYILFY +
Sbjct: 335 VKSSAAYILFYTSL 348
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
| >d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 102 | Back information, alignment and structure |
|---|
| >d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1042 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d2g45a1 | 113 | Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum | 99.81 | |
| d2uzga1 | 95 | Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H | 99.76 | |
| d2idaa1 | 102 | Hypothetical protein RPA1320 {Rhodopseudomonas pal | 99.71 | |
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 96.72 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 96.72 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 88.28 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=431.56 Aligned_cols=293 Identities=27% Similarity=0.425 Sum_probs=247.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCC----CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7763233322898511489999983688899999606589----892999999999971899999852482336987620
Q 001627 225 ACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT----FGPLTIALKKLFAETKPETGLRNVINPRSFFGCICS 300 (1042)
Q Consensus 225 ~~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~~~----~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~i~~ 300 (1042)
..+|++||.|+||||||||+||+|+++|+||++++..... ..++..+|+.+|..|+... .++.|..++..+.
T Consensus 2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~~~~~~~- 77 (347)
T d1nbfa_ 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG- 77 (347)
T ss_dssp CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTCCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHTT-
T ss_pred CCCCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHC-
T ss_conf 999972986399656999999999847999999970776688641269999999999986579---9757199997623-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 29999999989879999999999979997420389999999988887543233440899999999189999777894104
Q 001627 301 KAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFL 380 (1042)
Q Consensus 301 ~~p~F~~~~QQDAhEFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~~~~~s~I~~iF~G~l~s~v~C~~C~~~S~~~E~F~ 380 (1042)
.+.|..+.||||||||.+||+.|++++.... ..++|.++|+|.+.+.+.|..|++.+.+.|+|+
T Consensus 78 -~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~---------------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~ 141 (347)
T d1nbfa_ 78 -WETLDSFMQHDVQELCRVLLDNVENKMKGTC---------------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYY 141 (347)
T ss_dssp -CCGGGGGSCBCHHHHHHHHHHHHHHHHTTST---------------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEES
T ss_pred -HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCCCCCEECEEEEEEEEECCCCCEEEEECCCC
T ss_conf -0002067787799999999998888875033---------------345655011347898678078661422322322
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28751699999998874014321036999878753234655544433222234443554434334567786532247899
Q 001627 381 DLSLPVPTKKAPSKKTQPASRAKKTKLPPKKSGRIRAKGTKDTHAVTTQSISNLSISSKSQSLTESTAPLSENVVSSSGG 460 (1042)
Q Consensus 381 dLSLpIp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 460 (1042)
+|+|+||..
T Consensus 142 ~l~L~i~~~----------------------------------------------------------------------- 150 (347)
T d1nbfa_ 142 DIQLSIKGK----------------------------------------------------------------------- 150 (347)
T ss_dssp SEEEECTTC-----------------------------------------------------------------------
T ss_pred CCCCCCCCC-----------------------------------------------------------------------
T ss_conf 331011233-----------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76644458996223347878899999998886422333112113432111134678876765554444576410146663
Q 001627 461 SQLLDSVGSPTVATQCGSALQNVPADPLPQHDQVIDIPVEQTVASLDDFWLDYIEPQTTGDVLDSTWQKSDVSVIQDSTD 540 (1042)
Q Consensus 461 s~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1042)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 22134578875444345533466532102479874336300013467776789988767899999998886432234301
Q 001627 541 FAWLDYIEPETISDEHGLTLENNDVLFVQDSGEQDEVSDDSLINSNQIPLLDSKPNLKADSSSGDAGEDELPLVVQDSEV 620 (1042)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1042)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 00575211233110026876556553247776544567798889975446999999999654578620046899999877
Q 001627 621 ILLPYNEEISTTAEKISGEGEASSSVVGCRQEEVDFDGFGDLFNEPETAIGPVPRPSSGTESVGSGFVVGNSSDSDPDEV 700 (1042)
Q Consensus 621 ~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 700 (1042)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999769999985202334358998410765226789999999998532038754479988777654587654445545
Q 001627 701 DDSDSPVSVESCLVHFIKPELLTDDNAWDCESCSKTLQRQKLEALKRRAKLASKPLINGGETSNQNDIQGSSLTDVDSLC 780 (1042)
Q Consensus 701 ~~~~s~~sie~cL~~~~~~E~l~~~~~~~Ce~Cs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 780 (1042)
.++++||..++.+|.|.++|.|.|..|+
T Consensus 151 ------~~~~~~l~~~~~~e~l~~~~~~~~~~~~---------------------------------------------- 178 (347)
T d1nbfa_ 151 ------KNIFESFVDYVAVEQLDGDNKYDAGEHG---------------------------------------------- 178 (347)
T ss_dssp ------CBHHHHHHHHTCCEEECGGGCEECSTTC----------------------------------------------
T ss_pred ------CCHHHHHHHHCCHHEECCCCCCCCCCCC----------------------------------------------
T ss_conf ------3103567764120224143100245676----------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
Q ss_conf 68777788731000000123699877776589998645542076478644794312441446877651568886311244
Q 001627 781 NGDAKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITD 860 (1042)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~~~~~c~~~~c~~~s~~~ 860 (1042)
T Consensus 179 -------------------------------------------------------------------------------- 178 (347)
T d1nbfa_ 179 -------------------------------------------------------------------------------- 178 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCC-CC
Q ss_conf 54303311599898876432235776300365545200122101211264221599998233799279998043238-46
Q 001627 861 QDEGSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQD-AR 939 (1042)
Q Consensus 861 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~C~~C~~~~~a~k~~~I~~lP~vLiIhLkRF~~d-~~ 939 (1042)
...+.|+..|.++|++|+|||+||.|+ ..
T Consensus 179 --------------------------------------------------~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~ 208 (347)
T d1nbfa_ 179 --------------------------------------------------LQEAEKGVKFLTLPPVLHLQLMRFMYDPQT 208 (347)
T ss_dssp --------------------------------------------------EECEEEEEEEEECCSEEEEEEECEEEETTT
T ss_pred --------------------------------------------------CEECCEEEEEEECCCHHEEEEEEEEECCCC
T ss_conf --------------------------------------------------301217899982698004751001342235
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 86123454254062013699999999999983069999999837458872999997799773233355579908999296
Q 001627 940 GRLSKLNGHVNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDV 1019 (1042)
Q Consensus 940 ~~~~Ki~~~V~fp~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~ 1019 (1042)
+...|+..+|.||..|||.+|+..... .....|+|+|||+|.|+.++|||+||+|.. .++.||+|||+
T Consensus 209 ~~~~K~~~~v~fp~~Ldl~~~~~~~~~-~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~-----------~~~~W~~fnD~ 276 (347)
T d1nbfa_ 209 DQNIKINDRFEFPEQLPLDEFLQKTDP-KDPANYILHAVLVHSGDNHGGHYVVYLNPK-----------GDGKWCKFDDD 276 (347)
T ss_dssp TEEEECCCCCBCCSEEECGGGBSSCCT-TSCCEEEEEEEEEEEEETTEEEEEEEECTT-----------SSSCCEEEETT
T ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCC-CCCCCEEEEEEEEECCCCCCCEEEEEEECC-----------CCCEEEEEECC
T ss_conf 731015724764544134653233334-576440567999845878799899806138-----------99989999899
Q ss_pred EEEEECHHHHCCC---------------CCEEEEEEEC
Q ss_conf 0036343233489---------------9299999979
Q 001627 1020 YVREVSLEEVLRC---------------EAYILFYEKI 1042 (1042)
Q Consensus 1020 ~V~~vs~eev~~~---------------~aYiLfYeRv 1042 (1042)
.|+++++++|+.. +||||||+|.
T Consensus 277 ~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~ 314 (347)
T d1nbfa_ 277 VVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314 (347)
T ss_dssp EEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEG
T ss_pred CEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 60898899998751588765545577897799999963
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|