Citrus Sinensis ID: 001692

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------103
MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEVIFS
cccHHHHHHHHHccEEEEcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccHHHHcccccccHHHHHHHHHHHHccccccccccccccccEEEEEccEEEEccccHHHHccccccHHHHHHHHHccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcHHHHHHHHcccccccccc
cccHHHHHHHHHccEEEccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccEEEEEEcccEEEEcHHHHHHccccHHHHHHHHHHccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEccccccccccEccHHHHHHHHcccHHHEEEEEcccccccccHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHcccccEccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccccHHccccccccHEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHccc
MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINnsigqdpnsksliGVLDIygfesfktnsFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINwsyiefvdnqDILDLIEKKPGGIIALLdeacmfprsthETFAQKLYQTFKnhkrfskpklarsdftichyagdvtyqtelfldknkDYVVAEHQALLSaskcsfvsslflplaeessktskfssiGSRFKQQLQQLLETlsssephyircvkpnnllkpaifENKNVLQQLRCGGVMEAIRIscagyptrkpfdEFVDRFGILASkvldgssdEVTACKRLLEKvglegyqigKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEaekvpvvqevpvIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSllstpikkmsehisapatqslenghhvieenisnepqsatpvkklgtesdsKLRRSHIEHQHENVDALINCVAKnlgycngkpvAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAieneddndhMAYWLSNTSTLLFLLQRSLKaagasgatphkkpptatslfgrmamgfrsspsSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIqaprtskgsvlrsgrsfgkdsasSHWQSIIDSLNTLLSTlkqnfvppvlVQKIFTQTFSYINVQLFNSLLLRrecctfsngeyvKAGLAELELWCCQakeevifs
mcdakaledslckreivtrdetitkwldpeaaavsrDALAKIVYSRLFDWLVEKINnsigqdpnsksLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILAskvldgssdeVTACKRLlekvglegyqigktkvflragQMADLDARrtevlgrsasiiqrkvrsylSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAaittqcawrgkVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKkeaekvpvvqevpvIDHAVVeeltseneklkTLVSSlekkidetekkfeetskiseerlKQALEAESKIVQLKTAMHRLEEkvsdmeteNQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENisnepqsatpvkkLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAagasgatphkkppTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQaprtskgsvlrsgRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEVIFS
MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEEssktskfssigsRFKqqlqqlletlsssePHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMkeievakkeaekvpvvqevpviDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRsspssanlaaaaalaVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKElssllslCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEVIFS
**********LCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPL********************************PHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLK**********************LTWRL*****************************************************PVVQEVPVIDHAVVE*******************************************************************************************************************************************NVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSL************************************LAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQA**********************HWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEVI**
*CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS***********************KQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVL******VTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWR***********************************************************************************************************************************************************************************************************************************************************************GKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQ**************MAYWLSNTSTLLFLLQ**********************************************AVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELS***********************************IIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEVIF*
********DSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLA*************SRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKA************PTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPR*********************WQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEVIFS
MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP***********SSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLS***************************************************RSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKA*************************************AAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPR******************SSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEV***
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MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPVVQEVPVIDHAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSEERLKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEVIFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1027 2.2.26 [Sep-21-2011]
P54697 2245 Myosin-J heavy chain OS=D yes no 0.556 0.254 0.413 1e-129
Q02440 1829 Unconventional myosin-Va yes no 0.662 0.371 0.372 1e-124
Q9Y4I1 1855 Unconventional myosin-Va yes no 0.653 0.361 0.372 1e-121
Q99104 1853 Unconventional myosin-Va yes no 0.646 0.358 0.375 1e-120
Q9QYF3 1828 Unconventional myosin-Va yes no 0.643 0.361 0.377 1e-120
Q9ULV0 1848 Unconventional myosin-Vb no no 0.671 0.373 0.360 1e-119
P21271 1818 Unconventional myosin-Vb no no 0.530 0.299 0.401 1e-119
P70569 1846 Unconventional myosin-Vb no no 0.565 0.314 0.387 1e-117
Q876G9 1568 Myosin-2 OS=Saccharomyces N/A no 0.633 0.415 0.354 1e-108
Q875X3 1567 Myosin-2A OS=Naumovozyma yes no 0.673 0.441 0.351 1e-107
>sp|P54697|MYOJ_DICDI Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2 Back     alignment and function desciption
 Score =  464 bits (1193), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/622 (41%), Positives = 367/622 (59%), Gaps = 50/622 (8%)

Query: 7    LEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNS--IGQDPN 64
            L +S+  R++VT  E+       E A  +RD+L+  +Y  +FDWLV KIN+S  I     
Sbjct: 417  LLNSMLTRKVVTGKESYISHNTKERAENARDSLSMFLYGMMFDWLVVKINSSMSISTQQK 476

Query: 65   SKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIE 124
            SKS IGVLDIYGFESF+ N FEQFCIN  NEKLQQ FNQHVFK EQ+EY KE I+WSYI+
Sbjct: 477  SKSFIGVLDIYGFESFEVNGFEQFCINYANEKLQQLFNQHVFKEEQQEYIKEKIDWSYID 536

Query: 125  FVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDF 184
            F DNQD LDLIEKKP  I+ LLDE  MFP++T +T A KLY    +H +F KP+ + + F
Sbjct: 537  FNDNQDTLDLIEKKPICILTLLDEETMFPKATPQTLATKLYSKMTSHSKFEKPRFSSTAF 596

Query: 185  TICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFL--------------- 229
            TI HYAG VTY+T+ FLDKNKD+++ E  ++L  S  SF+  L                 
Sbjct: 597  TINHYAGKVTYETDQFLDKNKDFIIPEQISILQRSNFSFIKVLMSHSDKFTQSPGGHPQG 656

Query: 230  ---PLAEESSKTS-----KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIF 281
               P +  +  TS     KF S+GS+F   L  L++T+S++ PHY+RC+KPN    P  F
Sbjct: 657  NGGPTSSNTKGTSGSSSMKFLSVGSQFSTSLATLMKTISTTTPHYVRCIKPNPEKLPQTF 716

Query: 282  ENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSS---------- 331
              ++V+ QLRCGGVME++RI CAG+PTR+   EF  R+ IL  K ++  S          
Sbjct: 717  NKQDVIHQLRCGGVMESVRICCAGFPTRRLLSEFYQRYKILYVKDINTGSGGGKKGSNNN 776

Query: 332  ---DEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVR 386
               D     + LL  + L  + Y+IG TKVFLRAGQ+A L+  R E L RSA++IQ++ +
Sbjct: 777  KIKDPKILVQNLLTGIELSDDKYKIGLTKVFLRAGQLASLEDMRLEQLDRSATVIQKRWK 836

Query: 387  SYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMC 446
             YL RK Y  LR +++ IQ   R   A+    +++R  S + IQ+  R +  +  Y+ + 
Sbjct: 837  GYLYRKRYKQLRDASLIIQTKLRSVHAKQQLSALQRTHSAILIQKVWRAHRDRVQYQKIR 896

Query: 447  FSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRG 506
             +++ +QT MR      ++   R   A+I++Q+  R+ L++    K  +  I  Q  WR 
Sbjct: 897  DASLQLQTVMRRHLFSEQVHRERCENAAIILQTKIRQILSKREVDKKLRGIILIQARWRM 956

Query: 507  KVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQ------ 560
            K+A+R   +L+  AR    +Q  KNKL++++EEL WRL  E + +  +E+ K +      
Sbjct: 957  KLAKRVYIQLRAEARSLRTVQEQKNKLQEKLEELQWRLTSEAKRKQQLEDQKVKSDTTIS 1016

Query: 561  ----ENAKLQSALQEMQLQFKE 578
                 N  L+  L E+QL+++E
Sbjct: 1017 ELSSNNDHLELQLSEIQLKYQE 1038
Processive motor protein that can move over long distances along F-actin without disassociating; processiveness depends on high physiological Mg(2+) concentrations. Presents a high actin affinity in the presence of ADP, fast ATP hydrolysis, and a high steady-state ATPase activity in the presence of actin that is rate limited by ADP release. Physiological decrease of free Mg(2+) ions leads to an increased rate of ADP release and shortening of the fraction of time it spends in the strong acting binding states.
Dictyostelium discoideum (taxid: 44689)
>sp|Q02440|MYO5A_CHICK Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1 Back     alignment and function description
>sp|Q9Y4I1|MYO5A_HUMAN Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2 Back     alignment and function description
>sp|Q99104|MYO5A_MOUSE Unconventional myosin-Va OS=Mus musculus GN=Myo5a PE=1 SV=2 Back     alignment and function description
>sp|Q9QYF3|MYO5A_RAT Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1 Back     alignment and function description
>sp|Q9ULV0|MYO5B_HUMAN Unconventional myosin-Vb OS=Homo sapiens GN=MYO5B PE=1 SV=3 Back     alignment and function description
>sp|P21271|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2 Back     alignment and function description
>sp|P70569|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1 Back     alignment and function description
>sp|Q876G9|MYO2_SACBA Myosin-2 OS=Saccharomyces bayanus GN=MYO2 PE=3 SV=2 Back     alignment and function description
>sp|Q875X3|MYO2A_NAUCC Myosin-2A OS=Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) GN=MYO2A PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1027
224070005 1513 predicted protein [Populus trichocarpa] 0.995 0.675 0.876 0.0
356545924 1549 PREDICTED: myosin-J heavy chain-like [Gl 0.994 0.659 0.834 0.0
255560295 1350 myosin XI, putative [Ricinus communis] g 0.959 0.729 0.866 0.0
225437918 1518 PREDICTED: myosin-H heavy chain [Vitis v 0.993 0.671 0.831 0.0
297744256 1540 unnamed protein product [Vitis vinifera] 0.993 0.662 0.831 0.0
356536864 1611 PREDICTED: myosin-J heavy chain-like [Gl 0.986 0.628 0.832 0.0
116047943 1512 myosin XI-2 [Nicotiana benthamiana] 0.993 0.674 0.819 0.0
29170491 1362 myosin XI [Nicotiana tabacum] 0.986 0.743 0.811 0.0
356505090 1519 PREDICTED: myosin-Va-like [Glycine max] 0.991 0.670 0.809 0.0
356572313 1527 PREDICTED: myosin-H heavy chain-like [Gl 0.993 0.667 0.807 0.0
>gi|224070005|ref|XP_002303100.1| predicted protein [Populus trichocarpa] gi|222844826|gb|EEE82373.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1851 bits (4794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 897/1023 (87%), Positives = 966/1023 (94%), Gaps = 1/1023 (0%)

Query: 1    MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIG 60
            MCD+KALEDSLCKR IVTRDETITKWLDPE+AAVSRDALAK+VYSRLFDWLV+KIN+SIG
Sbjct: 362  MCDSKALEDSLCKRVIVTRDETITKWLDPESAAVSRDALAKVVYSRLFDWLVDKINSSIG 421

Query: 61   QDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINW 120
            QDP+SK LIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEY+KE I+W
Sbjct: 422  QDPHSKYLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDW 481

Query: 121  SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLA 180
            SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRF+KPKLA
Sbjct: 482  SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFAKPKLA 541

Query: 181  RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240
            RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQAL+ ASKCSFVS LF PLAEESSK SK
Sbjct: 542  RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALMGASKCSFVSGLFPPLAEESSKQSK 601

Query: 241  FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300
            FSSIGSRFKQQLQ LLETLS++EPHYIRCVKPNNLLKPAIFENKN LQQLRCGGVMEAIR
Sbjct: 602  FSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFENKNALQQLRCGGVMEAIR 661

Query: 301  ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRA 360
            ISCAG+PTRK FDEFVDRFG+LA +VLDGSSDEVTACKRLLEKVGL GYQIGKTKVFLRA
Sbjct: 662  ISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVTACKRLLEKVGLTGYQIGKTKVFLRA 721

Query: 361  GQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESM 420
            GQMA+LDARR+EVLGRSASIIQRKVRSYLSR+++I LRRSAI IQ+ACRGQ+AR VYE+M
Sbjct: 722  GQMAELDARRSEVLGRSASIIQRKVRSYLSRRSFITLRRSAIQIQSACRGQIARHVYENM 781

Query: 421  RREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSH 480
            RREA+ LRIQRDLRMY+A+KAYKD+C+SA+ IQTGMRGMAAR++LRFRRQTRA+I+IQS 
Sbjct: 782  RREAASLRIQRDLRMYIARKAYKDLCYSAISIQTGMRGMAARDDLRFRRQTRAAIMIQSQ 841

Query: 481  CRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEEL 540
            CRKYLARLHY KLKKAAITTQCAWRG+VAR+ELR LKMAARETGALQAAKNKLEKQVEEL
Sbjct: 842  CRKYLARLHYKKLKKAAITTQCAWRGRVARKELRNLKMAARETGALQAAKNKLEKQVEEL 901

Query: 541  TWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVV 600
            TWRLQLEKRMR D+EEAKTQENAKLQSALQEMQLQFKE+KE L+KE E A K  EKVPV+
Sbjct: 902  TWRLQLEKRMRADVEEAKTQENAKLQSALQEMQLQFKETKEMLVKEREAAIKVTEKVPVI 961

Query: 601  QEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660
            QEVPV+DH  +E+LT ENEKLK LV+SLEKKIDETEKKFEETS+ISEERLKQALEAESKI
Sbjct: 962  QEVPVVDHVALEKLTIENEKLKALVTSLEKKIDETEKKFEETSRISEERLKQALEAESKI 1021

Query: 661  VQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENI 720
            V+LKTAMHRLEEK SD+ETENQ+LRQQ LL TP KK+SE    P TQSLENGHH+ +EN 
Sbjct: 1022 VELKTAMHRLEEKFSDIETENQVLRQQGLLQTPAKKLSERPPIPPTQSLENGHHLNDENK 1081

Query: 721  SNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKC 780
            +NEPQSATPVK  GTESDSK RRSHIE QHEN+DALI+CV  N+G+ +GKPVAA TIY+C
Sbjct: 1082 ANEPQSATPVKTYGTESDSKFRRSHIERQHENIDALISCVTNNIGFSHGKPVAALTIYRC 1141

Query: 781  LLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASG 840
            LLHWKSFEAERTSVFDRLIQMIGSAIENE++N+HMAYWLSNTSTLLFLLQRS+KAAGAS 
Sbjct: 1142 LLHWKSFEAERTSVFDRLIQMIGSAIENEENNEHMAYWLSNTSTLLFLLQRSIKAAGAS- 1200

Query: 841  ATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVE 900
            ATP +KPP+ATSLFGRM MGFRSSPSS+NLAAAAALAVVRQVEAKYPALLFKQQLAAYVE
Sbjct: 1201 ATPQRKPPSATSLFGRMTMGFRSSPSSSNLAAAAALAVVRQVEAKYPALLFKQQLAAYVE 1260

Query: 901  KIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLS 960
            KIYGIIRDNLKKEL+SLLSLCIQAPRTSKGSVLRSGRSFGKDS  SHWQSI+DSLNTLLS
Sbjct: 1261 KIYGIIRDNLKKELASLLSLCIQAPRTSKGSVLRSGRSFGKDSPLSHWQSIVDSLNTLLS 1320

Query: 961  TLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQA 1020
            TLKQNFVPPVL+QKI+TQTFSYINVQLFNSLLLRRECCTFSNGEYVK+GLAELELW  QA
Sbjct: 1321 TLKQNFVPPVLIQKIYTQTFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWSAQA 1380

Query: 1021 KEE 1023
            KEE
Sbjct: 1381 KEE 1383

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356545924|ref|XP_003541383.1| PREDICTED: myosin-J heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|255560295|ref|XP_002521165.1| myosin XI, putative [Ricinus communis] gi|223539734|gb|EEF41316.1| myosin XI, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225437918|ref|XP_002268099.1| PREDICTED: myosin-H heavy chain [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744256|emb|CBI37226.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536864|ref|XP_003536953.1| PREDICTED: myosin-J heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|116047943|gb|ABJ53197.1| myosin XI-2 [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|29170491|dbj|BAC66162.1| myosin XI [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356505090|ref|XP_003521325.1| PREDICTED: myosin-Va-like [Glycine max] Back     alignment and taxonomy information
>gi|356572313|ref|XP_003554313.1| PREDICTED: myosin-H heavy chain-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1027
TAIR|locus:2020270 1500 XIB "myosin XI B" [Arabidopsis 0.982 0.672 0.700 0.0
TAIR|locus:2117768 1516 XIH [Arabidopsis thaliana (tax 0.987 0.668 0.671 0.0
TAIR|locus:2039007 1493 XIG "myosin-like protein XIG" 0.830 0.571 0.647 0.0
TAIR|locus:2199449 1529 XIE [Arabidopsis thaliana (tax 0.996 0.669 0.565 8.3e-312
TAIR|locus:2025535 1538 XIC [Arabidopsis thaliana (tax 0.996 0.665 0.562 1.5e-310
TAIR|locus:2149932 1545 XIK [Arabidopsis thaliana (tax 0.990 0.658 0.567 7.7e-309
TAIR|locus:2007938 1520 MYA1 "myosin 1" [Arabidopsis t 0.989 0.668 0.532 7.1e-290
TAIR|locus:2046570 1770 XID "myosin XI D" [Arabidopsis 0.697 0.404 0.612 1.6e-256
TAIR|locus:2197773 1730 XIA "myosin XI A" [Arabidopsis 0.777 0.461 0.562 3.2e-254
TAIR|locus:2125929 1522 XI-I [Arabidopsis thaliana (ta 0.976 0.659 0.477 1.2e-248
TAIR|locus:2020270 XIB "myosin XI B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3675 (1298.7 bits), Expect = 0., P = 0.
 Identities = 716/1022 (70%), Positives = 824/1022 (80%)

Query:     1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIG 60
             MC+ K+LEDSLCKR + TRDETITK LDPEAA +SRDALAK++YSRLFDWLVEKIN SIG
Sbjct:   363 MCNEKSLEDSLCKRIMATRDETITKTLDPEAALLSRDALAKVMYSRLFDWLVEKINTSIG 422

Query:    61 QDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINW 120
             QDP+SK LIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEY KE INW
Sbjct:   423 QDPDSKYLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEINW 482

Query:   121 SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLA 180
             SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQT+KNHKRF+KPKLA
Sbjct:   483 SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTYKNHKRFTKPKLA 542

Query:   181 RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEEXXXXXX 240
             RSDFTICHYAGDVTYQTELFLDKNKDYV+AEHQALL+AS CSFV++LF P++++      
Sbjct:   543 RSDFTICHYAGDVTYQTELFLDKNKDYVIAEHQALLNASTCSFVANLFPPVSDDSKQSKF 602

Query:   241 XXXXXXRFKXXXXXXXXXXXXXXPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300
                   RFK              PHYIRC+KPNNLLKP IFEN+NVLQQLRCGGVMEAIR
Sbjct:   603 SSIGT-RFKQQLVSLLEILNTTEPHYIRCIKPNNLLKPGIFENQNVLQQLRCGGVMEAIR 661

Query:   301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRA 360
             ISCAGYPTRK FDEF++RFGI+A +VLD +S+E  ACK+LL+K GLEGYQIGK+KVFLRA
Sbjct:   662 ISCAGYPTRKHFDEFLNRFGIIAPQVLDKNSNEPAACKKLLDKAGLEGYQIGKSKVFLRA 721

Query:   361 GQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESM 420
             GQMADLD RRTE+LGRSASIIQRKVRSYL++K +I LR SA  IQA CRG LAR++YE M
Sbjct:   722 GQMADLDTRRTEILGRSASIIQRKVRSYLAQKTFIQLRISATQIQAVCRGYLARSIYEGM 781

Query:   421 RREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSH 480
             RREA+ L+IQRDLR +LA+KAY ++  + + IQ GMRGM +R EL  RRQT+A+ +IQ+ 
Sbjct:   782 RREAAALKIQRDLRKFLARKAYTELFSATILIQAGMRGMVSRKELCLRRQTKAATIIQTR 841

Query:   481 CRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEEL 540
             CR YLARLHY KLKKAAITTQCAWRGKVAR+EL+ LKMAARETGALQ AKNKLEKQVEEL
Sbjct:   842 CRVYLARLHYRKLKKAAITTQCAWRGKVARKELKNLKMAARETGALQEAKNKLEKQVEEL 901

Query:   541 TWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMXXXXXXXXXXXXXXXX 600
             TWRLQLEKRMR D+EEAK QENAK +S+L+E+Q +FKE++  L+                
Sbjct:   902 TWRLQLEKRMRTDLEEAKKQENAKYESSLEEIQNKFKETEALLIKEREAAKTVSEVLPII 961

Query:   601 XXXXXXDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660
                   D  ++E+LT+ENEKLK +VSSLE KIDET K+  ET++IS++RLKQAL AESK+
Sbjct:   962 KEVPVVDQELMEKLTNENEKLKGMVSSLEIKIDETAKELHETARISQDRLKQALAAESKV 1021

Query:   661 VQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENI 720
              +LKTAM RLEEK+SDMETE QI+ QQ++L+TP+K ++ H      ++LENGH    EN 
Sbjct:  1022 AKLKTAMQRLEEKISDMETEKQIMLQQTILNTPVKSVAGHPPTATIKNLENGHRTNLENQ 1081

Query:   721 SNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKC 780
              NE            E +    +S  E Q ENVD LI+CV +N+G+ NGKP+AAFTIYKC
Sbjct:  1082 FNE-----------VEVNGNAGKSAAERQLENVDTLIDCVKENIGFSNGKPIAAFTIYKC 1130

Query:   781 LLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASG 840
             LLHWK FE+E+TS FDRLI+MIGSAIENEDDN H+AYWL+NTS LLFLLQ+SLK AGA G
Sbjct:  1131 LLHWKCFESEKTSAFDRLIEMIGSAIENEDDNGHLAYWLTNTSALLFLLQKSLKPAGA-G 1189

Query:   841 ATPHKKPPTATSLFGRMAMGFRXXXXXXXXXXXXXXXVVRQVEAKYPALLFKQQLAAYVE 900
             AT  KKPP  TSLFGRMA+ FR               V+R VEAKYPALLFKQQLAAYVE
Sbjct:  1190 ATASKKPPITTSLFGRMALSFRSSPNLAAAAEAAALAVIRPVEAKYPALLFKQQLAAYVE 1249

Query:   901 KIYGIIRDNLKKEXXXXXXXCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLS 960
             KI+G+IRDNLKKE       CIQAPR SKG + RS RS GKDS + HWQSIID LN+LL+
Sbjct:  1250 KIFGMIRDNLKKELSALISMCIQAPRISKGGIQRSARSLGKDSPAIHWQSIIDGLNSLLA 1309

Query:   961 TLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQA 1020
              LK N+VP VL+QKI TQTFS++NVQLFNSLLLR+ECCTFSNGE+VK+GLAELELWC Q 
Sbjct:  1310 ILKDNYVPLVLIQKIHTQTFSFVNVQLFNSLLLRKECCTFSNGEFVKSGLAELELWCGQV 1369

Query:  1021 KE 1022
              E
Sbjct:  1370 NE 1371
GO:0003774 "motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016459 "myosin complex" evidence=IEA
GO:0030048 "actin filament-based movement" evidence=RCA;TAS
GO:0048767 "root hair elongation" evidence=IGI
GO:0051645 "Golgi localization" evidence=RCA
GO:0051646 "mitochondrion localization" evidence=RCA
GO:0060151 "peroxisome localization" evidence=RCA
TAIR|locus:2117768 XIH [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039007 XIG "myosin-like protein XIG" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199449 XIE [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025535 XIC [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149932 XIK [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007938 MYA1 "myosin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046570 XID "myosin XI D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197773 XIA "myosin XI A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125929 XI-I [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00002589
hypothetical protein (1513 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1027
cd01384674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 0.0
smart00242677 smart00242, MYSc, Myosin 0.0
cd00124679 cd00124, MYSc, Myosin motor domain 1e-160
COG50221463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 1e-158
cd01380691 cd01380, MYSc_type_V, Myosin motor domain, type V 1e-146
pfam00063679 pfam00063, Myosin_head, Myosin head (motor domain) 1e-138
cd01377693 cd01377, MYSc_type_II, Myosin motor domain, type I 1e-134
cd01378674 cd01378, MYSc_type_I, Myosin motor domain, type I 1e-125
cd01381671 cd01381, MYSc_type_VII, Myosin motor domain, type 1e-120
cd01383677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 1e-109
cd01382717 cd01382, MYSc_type_VI, Myosin motor domain, type V 4e-89
cd01385692 cd01385, MYSc_type_IX, Myosin motor domain, type I 6e-86
cd01379653 cd01379, MYSc_type_III, Myosin motor domain, type 2e-85
cd01387677 cd01387, MYSc_type_XV, Myosin motor domain, type X 6e-85
PTZ00014821 PTZ00014, PTZ00014, myosin-A; Provisional 1e-77
cd01386767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 7e-20
pfam01843105 pfam01843, DIL, DIL domain 5e-19
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-05
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 4e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-04
pfam01576859 pfam01576, Myosin_tail_1, Myosin tail 2e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
COG1340294 COG1340, COG1340, Uncharacterized archaeal coiled- 6e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 7e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 9e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
TIGR01069771 TIGR01069, mutS2, MutS2 family protein 0.001
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.002
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.003
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 0.003
pfam07926132 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein 0.003
pfam09731493 pfam09731, Mitofilin, Mitochondrial inner membrane 0.003
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.004
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.004
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information 
 Score =  786 bits (2032), Expect = 0.0
 Identities = 312/374 (83%), Positives = 350/374 (93%)

Query: 1   MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIG 60
           MCD KALED+LCKR +VT +E ITK LDP++A +SRDALAK +YSRLFDWLV KIN+SIG
Sbjct: 301 MCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIG 360

Query: 61  QDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINW 120
           QDP+SKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEY+KE I+W
Sbjct: 361 QDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDW 420

Query: 121 SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLA 180
           SYIEFVDNQD+LDLIEKKPGGIIALLDEACMFP+STHETFAQKLYQTFK+HKRF KPKL+
Sbjct: 421 SYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480

Query: 181 RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240
           R+ FTI HYAGDVTYQT+ FLDKNKDYVVAEHQALL+AS CSFV+ LF PL EE+SK+SK
Sbjct: 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSK 540

Query: 241 FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300
           FSSIGSRFKQQLQ L+ETLS++EPHYIRC+KPNN+LKP IFEN+NVLQQLRCGGV+EAIR
Sbjct: 541 FSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIR 600

Query: 301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRA 360
           ISCAGYPTR+ FDEF+DRFGILA +VL GSSD+  ACK++L+K+GL+GYQIGKTKVFLRA
Sbjct: 601 ISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKILDKMGLKGYQIGKTKVFLRA 660

Query: 361 GQMADLDARRTEVL 374
           GQMA+LDARRTEVL
Sbjct: 661 GQMAELDARRTEVL 674

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information
>gnl|CDD|216736 pfam01843, DIL, DIL domain Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein Back     alignment and domain information
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1027
COG5022 1463 Myosin heavy chain [Cytoskeleton] 100.0
PTZ00014821 myosin-A; Provisional 100.0
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 100.0
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 100.0
cd01384674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 100.0
cd01380691 MYSc_type_V Myosin motor domain, type V myosins. M 100.0
cd01378674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
cd01377693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
cd01381671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
cd01387677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
cd01383677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
cd01382717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
cd01385692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
cd01379653 MYSc_type_III Myosin motor domain, type III myosin 100.0
smart00242677 MYSc Myosin. Large ATPases. ATPase; molecular moto 100.0
KOG01621106 consensus Myosin class I heavy chain [Cytoskeleton 100.0
cd00124679 MYSc Myosin motor domain. This catalytic (head) do 100.0
cd01386767 MYSc_type_XVIII Myosin motor domain, type XVIII my 100.0
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 100.0
PF00063689 Myosin_head: Myosin head (motor domain); InterPro: 100.0
KOG42291062 consensus Myosin VII, myosin IXB and related myosi 100.0
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 99.89
PF01843105 DIL: DIL domain; InterPro: IPR018444 Dilute encode 99.49
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 99.16
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 98.53
COG5022 1463 Myosin heavy chain [Cytoskeleton] 98.22
KOG0520975 consensus Uncharacterized conserved protein, conta 98.19
KOG0971 1243 consensus Microtubule-associated protein dynactin 98.09
KOG0520975 consensus Uncharacterized conserved protein, conta 97.8
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.66
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 97.51
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 97.45
PRK11637428 AmiB activator; Provisional 97.42
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.41
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.34
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.3
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.26
KOG09331174 consensus Structural maintenance of chromosome pro 97.23
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.22
KOG0933 1174 consensus Structural maintenance of chromosome pro 97.1
PRK11637428 AmiB activator; Provisional 97.08
PRK04863 1486 mukB cell division protein MukB; Provisional 97.06
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.06
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 97.04
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 97.04
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.03
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.99
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.97
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.96
COG4942420 Membrane-bound metallopeptidase [Cell division and 96.93
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.92
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 96.91
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 96.84
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.84
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.83
KOG42291062 consensus Myosin VII, myosin IXB and related myosi 96.83
PRK09039343 hypothetical protein; Validated 96.81
KOG2128 1401 consensus Ras GTPase-activating protein family - I 96.8
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.77
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 96.76
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 96.75
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 96.67
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.66
PRK02224880 chromosome segregation protein; Provisional 96.59
PRK02224 880 chromosome segregation protein; Provisional 96.55
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 96.53
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 96.51
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.48
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.48
KOG1003205 consensus Actin filament-coating protein tropomyos 96.45
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 96.4
KOG2128 1401 consensus Ras GTPase-activating protein family - I 96.3
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.24
PRK03918880 chromosome segregation protein; Provisional 96.2
PRK04863 1486 mukB cell division protein MukB; Provisional 96.16
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.13
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.09
PHA02562562 46 endonuclease subunit; Provisional 95.94
PF13851201 GAS: Growth-arrest specific micro-tubule binding 95.92
COG3883265 Uncharacterized protein conserved in bacteria [Fun 95.86
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 95.84
COG4372499 Uncharacterized protein conserved in bacteria with 95.81
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 95.81
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 95.8
PF07111 739 HCR: Alpha helical coiled-coil rod protein (HCR); 95.76
PRK03918880 chromosome segregation protein; Provisional 95.75
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.74
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 95.74
PF00038312 Filament: Intermediate filament protein; InterPro: 95.73
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 95.71
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 95.7
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 95.7
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.7
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.62
KOG1103561 consensus Predicted coiled-coil protein [Function 95.62
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 95.6
smart0001526 IQ Short calmodulin-binding motif containing conse 95.57
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 95.54
PHA02562562 46 endonuclease subunit; Provisional 95.51
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 95.5
PF14662193 CCDC155: Coiled-coil region of CCDC155 95.5
KOG2991330 consensus Splicing regulator [RNA processing and m 95.44
TIGR006061311 rad50 rad50. This family is based on the phylogeno 95.42
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 95.39
PRK09039343 hypothetical protein; Validated 95.38
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 95.32
TIGR006061311 rad50 rad50. This family is based on the phylogeno 95.27
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 95.26
PF14662193 CCDC155: Coiled-coil region of CCDC155 95.26
PF15066527 CAGE1: Cancer-associated gene protein 1 family 95.24
PF15397258 DUF4618: Domain of unknown function (DUF4618) 95.1
COG3883265 Uncharacterized protein conserved in bacteria [Fun 95.05
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 94.99
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 94.96
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 94.96
smart0001526 IQ Short calmodulin-binding motif containing conse 94.91
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.84
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 94.82
KOG0018 1141 consensus Structural maintenance of chromosome pro 94.81
PF10174775 Cast: RIM-binding protein of the cytomatrix active 94.79
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 94.75
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 94.7
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 94.69
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 94.69
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 94.62
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 94.58
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 94.55
KOG0249 916 consensus LAR-interacting protein and related prot 94.54
COG4372499 Uncharacterized protein conserved in bacteria with 94.54
PF13870177 DUF4201: Domain of unknown function (DUF4201) 94.54
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 94.52
PTZ00014821 myosin-A; Provisional 94.49
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 94.48
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 94.35
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 94.22
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 94.21
PRK10698222 phage shock protein PspA; Provisional 94.2
TIGR02977219 phageshock_pspA phage shock protein A. Members of 94.14
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 94.13
COG4026290 Uncharacterized protein containing TOPRIM domain, 94.12
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 94.12
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.12
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 94.03
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 93.99
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 93.89
PF00038312 Filament: Intermediate filament protein; InterPro: 93.88
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 93.82
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 93.8
KOG4673961 consensus Transcription factor TMF, TATA element m 93.72
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 93.64
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 93.64
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 93.59
KOG1937521 consensus Uncharacterized conserved protein [Funct 93.57
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 93.55
KOG1003205 consensus Actin filament-coating protein tropomyos 93.5
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 93.44
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 93.4
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 93.24
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 93.22
COG2433652 Uncharacterized conserved protein [Function unknow 93.13
PRK04778569 septation ring formation regulator EzrA; Provision 92.98
KOG0964 1200 consensus Structural maintenance of chromosome pro 92.96
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 92.83
KOG0964 1200 consensus Structural maintenance of chromosome pro 92.79
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 92.58
PRK01156895 chromosome segregation protein; Provisional 92.56
PRK10361475 DNA recombination protein RmuC; Provisional 92.28
PRK10884206 SH3 domain-containing protein; Provisional 92.21
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 92.17
PF13870177 DUF4201: Domain of unknown function (DUF4201) 92.13
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 92.11
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 92.08
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 92.08
PRK10884206 SH3 domain-containing protein; Provisional 92.02
PF135141111 AAA_27: AAA domain 91.95
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 91.77
PF10186302 Atg14: UV radiation resistance protein and autopha 91.72
PF09738302 DUF2051: Double stranded RNA binding protein (DUF2 91.65
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 91.65
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 91.62
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 91.62
PF15066527 CAGE1: Cancer-associated gene protein 1 family 91.6
TIGR026801353 conserved hypothetical protein TIGR02680. Members 91.55
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 91.5
KOG0979 1072 consensus Structural maintenance of chromosome pro 91.5
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 91.49
PLN02939 977 transferase, transferring glycosyl groups 91.44
COG4026290 Uncharacterized protein containing TOPRIM domain, 91.41
PF07111 739 HCR: Alpha helical coiled-coil rod protein (HCR); 91.39
KOG0963629 consensus Transcription factor/CCAAT displacement 91.37
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 91.37
KOG0999772 consensus Microtubule-associated protein Bicaudal- 91.32
COG4942420 Membrane-bound metallopeptidase [Cell division and 91.16
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 91.15
PF13851201 GAS: Growth-arrest specific micro-tubule binding 91.14
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 91.09
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 91.02
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 90.89
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 90.88
KOG0979 1072 consensus Structural maintenance of chromosome pro 90.75
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 90.5
PF07889126 DUF1664: Protein of unknown function (DUF1664); In 90.47
PF05010207 TACC: Transforming acidic coiled-coil-containing p 90.26
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 90.23
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 90.07
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 90.04
PF05010207 TACC: Transforming acidic coiled-coil-containing p 90.01
PF10186302 Atg14: UV radiation resistance protein and autopha 90.01
KOG1962216 consensus B-cell receptor-associated protein and r 90.0
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 89.91
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 89.77
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 89.74
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 89.67
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 89.65
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 89.53
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 89.46
COG2433652 Uncharacterized conserved protein [Function unknow 89.32
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 89.2
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 89.11
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 88.91
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 88.74
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 88.72
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 88.64
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 88.44
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 88.37
KOG4403575 consensus Cell surface glycoprotein STIM, contains 88.36
PRK04778569 septation ring formation regulator EzrA; Provision 88.35
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 88.06
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 88.04
PRK11281 1113 hypothetical protein; Provisional 87.96
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 87.88
PRK10929 1109 putative mechanosensitive channel protein; Provisi 87.79
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 87.7
PF12777344 MT: Microtubule-binding stalk of dynein motor; Int 87.6
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 87.51
PF10174775 Cast: RIM-binding protein of the cytomatrix active 87.32
COG5185622 HEC1 Protein involved in chromosome segregation, i 87.29
KOG02431041 consensus Kinesin-like protein [Cytoskeleton] 87.06
TIGR00634563 recN DNA repair protein RecN. All proteins in this 87.04
PRK12704520 phosphodiesterase; Provisional 86.85
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 86.81
PF13514 1111 AAA_27: AAA domain 85.9
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 85.9
KOG1962216 consensus B-cell receptor-associated protein and r 85.79
KOG2991330 consensus Splicing regulator [RNA processing and m 85.68
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 85.49
PRK10869553 recombination and repair protein; Provisional 85.4
PF10205102 KLRAQ: Predicted coiled-coil domain-containing pro 85.4
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 85.39
PRK00106535 hypothetical protein; Provisional 85.09
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 84.92
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 84.83
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 84.52
PRK1542279 septal ring assembly protein ZapB; Provisional 84.48
PF05769181 DUF837: Protein of unknown function (DUF837); Inte 84.39
KOG4809654 consensus Rab6 GTPase-interacting protein involved 84.39
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 83.8
cd00632105 Prefoldin_beta Prefoldin beta; Prefoldin is a hexa 83.73
PLN031881320 kinesin-12 family protein; Provisional 83.56
PF12761195 End3: Actin cytoskeleton-regulatory complex protei 83.56
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 83.36
PF11180192 DUF2968: Protein of unknown function (DUF2968); In 83.27
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 83.24
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 83.04
KOG4809654 consensus Rab6 GTPase-interacting protein involved 82.84
PF12240205 Angiomotin_C: Angiomotin C terminal; InterPro: IPR 82.82
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 82.81
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 82.79
PF15397258 DUF4618: Domain of unknown function (DUF4618) 82.7
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 82.69
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 82.57
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 82.53
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 82.2
PF10234267 Cluap1: Clusterin-associated protein-1; InterPro: 82.14
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 82.05
KOG4673961 consensus Transcription factor TMF, TATA element m 82.02
PF09731582 Mitofilin: Mitochondrial inner membrane protein; I 81.69
PRK09343121 prefoldin subunit beta; Provisional 81.64
KOG0288459 consensus WD40 repeat protein TipD [General functi 81.39
KOG4603201 consensus TBP-1 interacting protein [Signal transd 81.35
PRK11281 1113 hypothetical protein; Provisional 81.0
PRK01156 895 chromosome segregation protein; Provisional 80.99
PRK13729475 conjugal transfer pilus assembly protein TraB; Pro 80.96
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 80.95
KOG0018 1141 consensus Structural maintenance of chromosome pro 80.86
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 80.84
PF10205102 KLRAQ: Predicted coiled-coil domain-containing pro 80.82
PF15456124 Uds1: Up-regulated During Septation 80.78
COG4477570 EzrA Negative regulator of septation ring formatio 80.61
PF15294278 Leu_zip: Leucine zipper 80.6
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-130  Score=1181.31  Aligned_cols=945  Identities=31%  Similarity=0.441  Sum_probs=695.2

Q ss_pred             CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001692            1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF   80 (1027)
Q Consensus         1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~GFE~f   80 (1027)
                      |||++.|.+||+.|.+.+++|.|.+++|..||..+||||||+||++||+|||++||.+|+..+...+|||||||||||+|
T Consensus       362 gId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiF  441 (1463)
T COG5022         362 GIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIF  441 (1463)
T ss_pred             CCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhh
Confidence            89999999999999999999999999999999999999999999999999999999999877667899999999999999


Q ss_pred             cCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CCcchhhhhHhhhcCCCCChHH
Q 001692           81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFPRSTHET  159 (1027)
Q Consensus        81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~~~~td~~  159 (1027)
                      +.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.+||++
T Consensus       442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s  521 (1463)
T COG5022         442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDES  521 (1463)
T ss_pred             ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchH
Confidence            999999999999999999999999999999999999999999999999999999998 3559999999999999999999


Q ss_pred             HHHHHHHHhc--CCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhccC
Q 001692          160 FAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSK  237 (1027)
Q Consensus       160 ~~~kl~~~~~--~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~  237 (1027)
                      |.+||++.+.  +++.|.+||++...|+|+||||+|+|+++||++||+|++++++++|+.+|+|+|+..||+... ...+
T Consensus       522 ~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~-~~~~  600 (1463)
T COG5022         522 FTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEE-NIES  600 (1463)
T ss_pred             HHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhh-hccc
Confidence            9999999886  568899999999999999999999999999999999999999999999999999999999543 3334


Q ss_pred             CCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChHHHHH
Q 001692          238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD  317 (1027)
Q Consensus       238 ~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~  317 (1027)
                      .++++|+|++||.||++||++|++|+||||||||||++|+|+.||+.+|++|||||||+|+|||+|+|||+|++|++|+.
T Consensus       601 K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~  680 (1463)
T COG5022         601 KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQ  680 (1463)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcccCC-----CCccHHHHHHHHHhhcCCC--CceeccceeeecccccccccchhhhcchhhHHHHHHHhhhccc
Q 001692          318 RFGILASKVLD-----GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLS  390 (1027)
Q Consensus       318 ry~~l~~~~~~-----~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~  390 (1027)
                      ||++|.|....     +..|.+.+|..||..+.+|  .||+|+||||||+|+++.||.+|...++.+++.||+.|||++.
T Consensus       681 RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~  760 (1463)
T COG5022         681 RYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYL  760 (1463)
T ss_pred             HHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999997432     2246899999999998776  6999999999999999999999999999999999999999999


Q ss_pred             chhhhhhchhhHHHHHHHHhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 001692          391 RKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMAARNELRFRR  469 (1027)
Q Consensus       391 R~~y~~~r~a~i~iQ~~~Rg~laR~~~~~~r~~~Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQ-s~~Rg~~aR~~~~~~r  469 (1027)
                      |++|.+....+..+|...+|++.++....--...+++.+|..||....|+.|...-..++.+| ..+|+...+.......
T Consensus       761 rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~  840 (1463)
T COG5022         761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF  840 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999999877766667799999999999999999999999999999 7788887777667777


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692          470 QTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKR  549 (1027)
Q Consensus       470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arkel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~  549 (1027)
                      ..++++.+|++||.+..+.+|..+.+.++.+|+.+|...|++++..++.+.+++..+.....+|+.++.++...+.....
T Consensus       841 ~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~  920 (1463)
T COG5022         841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI  920 (1463)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999876662111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchh---hHHHHHHHHHHHHHHHHHHH
Q 001692          550 MRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI---DHAVVEELTSENEKLKTLVS  626 (1027)
Q Consensus       550 ~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~---~~~~~~~L~~e~~kLe~~l~  626 (1027)
                      .+.++   +.+....|+.-+..       .                   .+++.+..   ...++..|.....+|++...
T Consensus       921 ~~~~~---k~e~~a~lk~~l~~-------~-------------------d~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  971 (1463)
T COG5022         921 ENLEF---KTELIARLKKLLNN-------I-------------------DLEEGPSIEYVKLPELNKLHEVESKLKETSE  971 (1463)
T ss_pred             hhhHH---HHHHHHHHHHHhhc-------c-------------------cccchhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            11100   00111111111111       0                   00000000   11234444445555444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhccccCcccccccccCC
Q 001692          627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE---NQILRQQSLLSTPIKKMSEHISA  703 (1027)
Q Consensus       627 ~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e---~~~L~qq~~~~~~~~~~~~~~~~  703 (1027)
                      +....+...+....+......    +++.....+.....+...+.+..+.++..   +..+.......+   ......+.
T Consensus       972 ~~~~~~k~~~~~~~~~~~~~~----el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~---s~~~~~~~ 1044 (1463)
T COG5022         972 EYEDLLKKSTILVREGNKANS----ELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIIS---SESTELSI 1044 (1463)
T ss_pred             HHHHHHHHhhHHHHhcccHHH----HHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhc---cchhhhhc
Confidence            444333333222222222222    22222222222222222233333333322   333322111110   00000000


Q ss_pred             CcccCCCCC--CCcccc-cCCCCCCCCCCcccCCCCcchHhhhhhhhhhhhhHHHHHHHhh-hccCCC-CCCchhHHHHH
Q 001692          704 PATQSLENG--HHVIEE-NISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVA-KNLGYC-NGKPVAAFTIY  778 (1027)
Q Consensus       704 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~~~~Ll~~i~-~~~~~~-~~~p~pA~ii~  778 (1027)
                      +.......+  ...... .+...   ........   .  ..-....+..+....+++.+. .++.+. ...+.||..+.
T Consensus      1045 ~~~~~~~~~~~~~~~~~l~~~~~---~l~~~r~~---~--~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~ 1116 (1463)
T COG5022        1045 LKPLQKLKGLLLLENNQLQARYK---ALKLRREN---S--LLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQ 1116 (1463)
T ss_pred             cCcccchhhhhhHHHHHhhhhHh---hhhhcCcc---c--chhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHH
Confidence            000000000  000000 00000   00000000   0  000011344667777777776 444333 23334666665


Q ss_pred             HHHh-hhhh-hhhhhhHHHHHHHHHHHHhhc---ccCCCcccchhhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccc
Q 001692          779 KCLL-HWKS-FEAERTSVFDRLIQMIGSAIE---NEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSL  853 (1027)
Q Consensus       779 ~c~~-~~~~-~~~~~~~ll~~i~~~I~~~i~---~~~~~~~lafWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~  853 (1027)
                      ..+. +|+. ...+...++...+..+..+..   +.+-...+.||.+|...+++.-       ......+.+      ..
T Consensus      1117 ~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~------~~ 1183 (1463)
T COG5022        1117 FIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPP-------PFAALSEKR------LY 1183 (1463)
T ss_pred             HHHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCC-------chhhcchhh------hh
Confidence            5444 8877 555666666666666666543   3344556789999998876310       000000000      00


Q ss_pred             hhhcccccCCCCCchhhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCC-Cc
Q 001692          854 FGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKG-SV  932 (1027)
Q Consensus       854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~L~~~~~~iy~~l~~~~~k~L~~~l~~~i~~~~~~~~-~~  932 (1027)
                      +..+. .+.+.        .+ ..++.         ..+..|..+..++|..|....  .+.+++.........+.+ .+
T Consensus      1184 ~~~~~-d~~~~--------~s-~s~v~---------~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~ 1242 (1463)
T COG5022        1184 QSALY-DEKSK--------LS-SSEVN---------DLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKG 1242 (1463)
T ss_pred             Hhhhh-ccccc--------cc-HHHHH---------HHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccc
Confidence            00000 00000        00 11222         333455666788888887765  333333211110001000 00


Q ss_pred             ccCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhhcCCCCCCchhhHHhhchhH
Q 001692          933 LRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAE 1012 (1027)
Q Consensus       933 ~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~in~~lfN~Ll~r~~~cs~s~g~qIr~nls~ 1012 (1027)
                      ...+......+...+.++++.+++++.+++..+.+.+.+..-.+.++.-++|+.+||.|.+|.....|+.|.++.+|.+.
T Consensus      1243 ~~~~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~ 1322 (1463)
T COG5022        1243 FNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEE 1322 (1463)
T ss_pred             ccchhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchh
Confidence            00001112245667888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcc
Q 001692         1013 LELWCCQAKEEV 1024 (1027)
Q Consensus      1013 Le~W~~~~~~e~ 1024 (1027)
                      +++||+.+|...
T Consensus      1323 ~~~w~~~~~i~~ 1334 (1463)
T COG5022        1323 LDDWCREFEISD 1334 (1463)
T ss_pred             hhHHHHhhcccc
Confidence            999999998654

>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility] Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3 Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology Back     alignment and domain information
>PRK09343 prefoldin subunit beta; Provisional Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif Back     alignment and domain information
>PF15456 Uds1: Up-regulated During Septation Back     alignment and domain information
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF15294 Leu_zip: Leucine zipper Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1027
2dfs_A1080 3-D Structure Of Myosin-V Inhibited State Length = 1e-113
1oe9_A795 Crystal Structure Of Myosin V Motor With Essential 8e-86
1w8j_A766 Crystal Structure Of Myosin V Motor Domain - Nucleo 2e-80
1w9j_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 3e-78
1g8x_A1010 Structure Of A Genetically Engineered Molecular Mot 3e-78
1w9i_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 9e-78
2xel_A776 Molecular Mechanism Of Pentachloropseudilin Mediate 2e-77
3mnq_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 2e-77
2aka_A776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 2e-77
1jwy_A776 Crystal Structure Of The Dynamin A Gtpase Domain Co 3e-77
2jhr_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-77
1yv3_A762 The Structural Basis Of Blebbistatin Inhibition And 3e-77
1d0x_A761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 3e-77
3myh_X762 Insights Into The Importance Of Hydrogen Bonding In 3e-77
1fmv_A761 Crystal Structure Of The Apo Motor Domain Of Dictyo 3e-77
1w9l_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 4e-77
1mma_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 7e-77
2xo8_A776 Crystal Structure Of Myosin-2 In Complex With Tribr 9e-77
1mmd_A762 Truncated Head Of Myosin From Dictyostelium Discoid 1e-76
2y0r_X758 Structural Basis For The Allosteric Interference Of 2e-76
1w9k_A770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 4e-76
2y9e_X758 Structural Basis For The Allosteric Interference Of 4e-76
1mmg_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 8e-76
1mmn_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-75
1lvk_A762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 7e-75
1dfk_A830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 7e-74
1dfl_A831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 7e-74
1qvi_A840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 7e-74
1kk7_A837 Scallop Myosin In The Near Rigor Conformation Lengt 8e-74
1b7t_A835 Myosin Digested By Papain Length = 835 9e-74
3i5g_A839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 2e-71
2ec6_A838 Placopecten Striated Muscle Myosin Ii Length = 838 3e-71
2os8_A840 Rigor-Like Structures Of Muscle Myosins Reveal Key 1e-69
3mkd_A692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 6e-68
2x9h_A695 Crystal Structure Of Myosin-2 Motor Domain In Compl 4e-67
2w4g_M840 Isometrically Contracting Insect Asynchronous Fligh 6e-66
3j04_A909 Em Structure Of The Heavy Meromyosin Subfragment Of 8e-66
3dtp_B973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 8e-66
3dtp_A971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 9e-66
1i84_S1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 1e-65
4a7f_C697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 8e-65
2ycu_A995 Crystal Structure Of Human Non Muscle Myosin 2c In 1e-64
1br1_A820 Smooth Muscle Myosin Motor Domain-Essential Light C 1e-64
4db1_A783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 2e-64
1lkx_A697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 3e-64
1br2_A791 Smooth Muscle Myosin Motor Domain Complexed With Mg 2e-62
2mys_A843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 2e-58
1m8q_A840 Molecular Models Of Averaged Rigor Crossbridges Fro 2e-58
2bki_A858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 1e-57
2v26_A784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 1e-55
3l9i_A814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 1e-55
4dbp_A814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 1e-55
2bkh_A814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 1e-55
4e7s_A798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 1e-55
4dbr_A786 Myosin Vi D179y (md) Pre-powerstroke State Length = 2e-55
2x51_A789 M6 Delta Insert1 Length = 789 2e-55
4e7z_A798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 2e-55
4dbq_A788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 2e-55
2vas_A788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 2e-55
4anj_A1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 3e-55
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure 
Iteration: 1

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/617 (38%), Positives = 345/617 (55%), Gaps = 42/617 (6%)
Query: 3   DAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD 62
           D + +   LC R++ T  ET  K +    A  +RDALAK +Y+ LF+W+V+ +N ++   
Sbjct: 367 DYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHST 426
Query: 63  PNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSY 122
               S IGVLDIYGFE+F+ NSFEQFCIN  NEKLQQ FN HVFK+EQEEY KE I W+ 
Sbjct: 427 VKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTL 486
Query: 123 IEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNH-KRFSKPKLAR 181
           I+F DNQ  ++LIE K  G++ LLDE C  P+ + +T+AQKLY T  N    F KP+L+ 
Sbjct: 487 IDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSN 545
Query: 182 SDFTICHYAGDVTYQTELFLDKNKDYVVAEH-QALLSASKCSFVSSLF------------ 228
             F I H+A  V YQ E FL+KNKD V  E  + L S+ K   +  LF            
Sbjct: 546 KAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSA 605
Query: 229 -----LPLAEE----------XXXXXXXXXXXXRFKXXXXXXXXXXXXXXPHYIRCVKPN 273
                +PL+                        +F+              PHY+RC+KPN
Sbjct: 606 TPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPN 665
Query: 274 NLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDE 333
           +   P  F+ K  +QQLR  GV+E IRIS AG+P+R  + EF  R+ +L  K  D  SD 
Sbjct: 666 DFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLM-KQKDVLSDR 724
Query: 334 VTACKRLLEKVGLEG--YQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSR 391
              CK +LEK+ L+   YQ GKTK+F RAGQ+A L+  R + L  +   IQ+ +R +L R
Sbjct: 725 KQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMR 784
Query: 392 KNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVC 451
           K Y+ +RR+AI IQ   RG  AR     +RR  + + IQ+  RMY+ +K Y+ M  + + 
Sbjct: 785 KKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIA 844
Query: 452 IQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARR 511
           +Q  +RG   RN+ +   +   SI+IQ H R +LAR+HY +  KA +  QC +R  +A+R
Sbjct: 845 LQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904
Query: 512 ELRKLKMAARETGALQAAKNKLEKQVEELTWRLQ--------LEKRMRVDMEEAKTQENA 563
           EL+KLK+ AR     +     LE ++ +L  ++         L ++M  ++E   + E  
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN-NLEITYSTETE 963
Query: 564 KLQSALQEMQLQFKESK 580
           KL+S ++ +++  +E+K
Sbjct: 964 KLRSDVERLRMSEEEAK 980
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1027
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 0.0
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 0.0
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 0.0
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 0.0
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 2e-04
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 0.0
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 6e-05
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 0.0
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 7e-08
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 0.0
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 0.0
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 0.0
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 0.0
2f6h_X 419 Myosin-2, type V myosin; mysoin V, cargo binding, 3e-43
3mmi_A 386 Myosin-4; globular tail, dilute domain, motor prot 3e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 2e-15
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 6e-14
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 2e-13
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 1e-10
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 3e-05
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 7e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 2e-04
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 5e-04
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 6e-04
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
 Score =  826 bits (2135), Expect = 0.0
 Identities = 256/725 (35%), Positives = 392/725 (54%), Gaps = 47/725 (6%)

Query: 1    MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIG 60
              D + +   LC R++ T  ET  K +    A  +RDALAK +Y+ LF+W+V+ +N ++ 
Sbjct: 365  GVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALH 424

Query: 61   QDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINW 120
                  S IGVLDIYGFE+F+ NSFEQFCIN  NEKLQQ FN HVFK+EQEEY KE I W
Sbjct: 425  STVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPW 484

Query: 121  SYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTF-KNHKRFSKPKL 179
            + I+F DNQ  ++LIE K  G++ LLDE C  P+ + +T+AQKLY T       F KP+L
Sbjct: 485  TLIDFYDNQPCINLIEAKM-GVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRL 543

Query: 180  ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASK-CSFVSSLFLPLAEESS-- 236
            +   F I H+A  V YQ E FL+KNKD V  E   +L +SK    +  LF    +  S  
Sbjct: 544  SNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603

Query: 237  -------------------------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVK 271
                                           ++G +F+  L  L+ETL+++ PHY+RC+K
Sbjct: 604  SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIK 663

Query: 272  PNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSS 331
            PN+   P  F+ K  +QQLR  GV+E IRIS AG+P+R  + EF  R+ +L  +  D  S
Sbjct: 664  PNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQK-DVLS 722

Query: 332  DEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYL 389
            D    CK +LEK+ L  + YQ GKTK+F RAGQ+A L+  R + L  +   IQ+ +R +L
Sbjct: 723  DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWL 782

Query: 390  SRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSA 449
             RK Y+ +RR+AI IQ   RG  AR     +RR  + + IQ+  RMY+ +K Y+ M  + 
Sbjct: 783  MRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDAT 842

Query: 450  VCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVA 509
            + +Q  +RG   RN+ +   +   SI+IQ H R +LAR+HY +  KA +  QC +R  +A
Sbjct: 843  IALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMA 902

Query: 510  RRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT-------QEN 562
            +REL+KLK+ AR     +     LE ++ +L  ++  + +    + E           E 
Sbjct: 903  KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 563  AKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLK 622
             KL+S ++ +++  +E+K    + + + ++ A+    + +       + E       + +
Sbjct: 963  EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

Query: 623  TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682
             LVS L+++    + + EE ++   ++ K+  E   K           E K  +++  ++
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK-------KLVEETKQLELDLNDE 1075

Query: 683  ILRQQ 687
             LR Q
Sbjct: 1076 RLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Length = 419 Back     alignment and structure
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae} Length = 386 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 63 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Length = 64 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1027
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 1e-138
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 2e-07
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-136
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-07
d1d0xa2712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 1e-129
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 1e-128
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 5e-04
d1lkxa_684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 1e-126
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 1e-126
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score =  432 bits (1113), Expect = e-138
 Identities = 163/440 (37%), Positives = 245/440 (55%), Gaps = 20/440 (4%)

Query: 2   CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQ 61
            +A  L  +L K ++    E +TK  +      S  ALAK +Y R+F+WLV ++N ++  
Sbjct: 341 INAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT 400

Query: 62  DPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWS 121
                  IGVLDI GFE F  NSFEQ CIN TNE+LQQ FN H+F +EQEEY KE I W 
Sbjct: 401 KAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWE 460

Query: 122 YIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRF------- 174
           +I+F  +  +   + +KP GI+++L+E CMFP++  ++F  KLYQ      R        
Sbjct: 461 FIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKP 520

Query: 175 SKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234
           ++P    + F + HYAG+V Y    +L+KNKD +     ALL ASK   V+ LF    E 
Sbjct: 521 TRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEP 580

Query: 235 S-------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVL 287
           +        K+S F +I +  ++ L +L++ L S+ PH++RC+ PN L +P + + + VL
Sbjct: 581 AGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVL 640

Query: 288 QQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVL-DGSSDEVTACKRLLEKVGL 346
            QL+C GV+E IRI   G+P+R  + EF  R+ ILA   +  G  D  T  +++L  + +
Sbjct: 641 HQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQM 700

Query: 347 EG--YQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIH- 403
           +   Y++G TKVF +AG + +L+  R E L +  S+ Q  +R YL RK Y  L+   I  
Sbjct: 701 DPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 760

Query: 404 --IQAACRGQLARTVYESMR 421
             IQ   R  L    ++  +
Sbjct: 761 SVIQRNIRKWLVLRNWQWWK 780
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1027
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 100.0
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 100.0
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 100.0
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 97.92
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 97.88
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 87.52
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=100.00  E-value=0  Score=862.00  Aligned_cols=418  Identities=39%  Similarity=0.683  Sum_probs=382.1

Q ss_pred             CCCHHHHHHHHHHCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99978899988323576369368811898789999999999999665899999998205999999742321113677656
Q 001692            1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF   80 (1027)
Q Consensus         1 ~~d~~~L~~~l~~r~~~~~~e~~~~~l~~~~a~~~rd~lak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgvLDi~GFe~f   80 (1027)
                      |||+++|.++||++++.+++|.+++++++++|..+||+|||+||++||+|||.+||..|.+......+||||||||||+|
T Consensus       340 gi~~~~L~~~l~~~~~~~~~e~i~~~l~~~~a~~~rdalaK~lY~~LF~wIV~~IN~~L~~~~~~~~~IgILDIfGFE~f  419 (789)
T d1kk8a2         340 GINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF  419 (789)
T ss_dssp             TSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_pred             CCCHHHHHCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEC
T ss_conf             99977742031677776066744337998999999999999999999999998766430777776527887302542304


Q ss_pred             CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf             67834576754203789768888565456968632198532245458087899752087624463476406999975999
Q 001692           81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF  160 (1027)
Q Consensus        81 ~~nsfeqlciN~anEklq~~f~~~vf~~e~~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~p~~td~~~  160 (1027)
                      +.|||||||||||||+||++|++++|+.|+++|.+|||+|..|+|.||.+++++|..+|.|||++|||||.+|++||++|
T Consensus       420 ~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~~~~Gll~lLdee~~~~~~td~~~  499 (789)
T d1kk8a2         420 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSF  499 (789)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHSTTSHHHHHHHHTTCTTCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHH
T ss_conf             76869999999999999999989999999999986177855787578889999987087447889876515788877899


Q ss_pred             HHHHHHHHCC-CCCCCCCC------CCCCCEEEEEECCCEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             9999988329-99977998------8999808995255326712014463050226999999841478321124544300
Q 001692          161 AQKLYQTFKN-HKRFSKPK------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE  233 (1027)
Q Consensus       161 ~~kl~~~~~~-~~~~~~p~------~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~  233 (1027)
                      ++++++.+.+ ++.|.+|.      .++..|+|+||||+|+|+++||++||+|.+++++..+++.|+++||+.||.....
T Consensus       500 l~kl~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~l~~ll~~S~n~~i~~lf~~~~~  579 (789)
T d1kk8a2         500 QDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE  579 (789)
T ss_dssp             HHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC---
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf             99999874477755358886555446888436751688545214575876030445999999995765999998527322


Q ss_pred             HCC-------CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             014-------8888854468789989999998636898346732799988877554100534621033236799984079
Q 001692          234 ESS-------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGY  306 (1027)
Q Consensus       234 ~~~-------~~~k~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~Qlr~~gvle~~ri~~~gy  306 (1027)
                      ...       ++.+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|++||+++||
T Consensus       580 ~~~~~~~~~~~~~~~~Tv~~~Fr~sL~~L~~~L~~t~~hFIRCIKPN~~k~p~~Fd~~~V~~QLr~~Gvle~vrirr~Gy  659 (789)
T d1kk8a2         580 PAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGF  659 (789)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCS
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCC
T ss_conf             34456777887777530899999999999998754797699942775546875658799999998626499999997578


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHCCCC--CCEECCCEEEECCCCCCCCCCHHHHCCHHHHHHHHH
Q ss_conf             9866957899987122005679-9950799999997541998--710055101330465443200011001025899987
Q 001692          307 PTRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQR  383 (1027)
Q Consensus       307 p~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~  383 (1027)
                      |+|++|.+|+.||++|.|..+. +..|.++.|+.||..++++  +|++|+||||||++++..||.+|.+.+..+++.||+
T Consensus       660 p~R~~f~eF~~ry~~L~~~~~~~~~~~~k~~~~~il~~~~~~~~~~qiGkTkVFlr~~~~~~LE~~r~~~l~~~~~~IQ~  739 (789)
T d1kk8a2         660 PSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQA  739 (789)
T ss_dssp             CEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             74054999999998768340015678889999999996698812088438879977619999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHCH---HHHHHHHHHHHHHHHHHHH
Q ss_conf             7420000031331101---3688898988461022420
Q 001692          384 KVRSYLSRKNYIMLRR---SAIHIQAACRGQLARTVYE  418 (1027)
Q Consensus       384 ~~R~~l~Rk~~~~~r~---a~i~iQ~~~Rg~laR~~~~  418 (1027)
                      +||||++|++|.++|.   +++.||++||||++|+.|.
T Consensus       740 ~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~~  777 (789)
T d1kk8a2         740 HIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ  777 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             99999999999999999999999999999999980369
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure