Citrus Sinensis ID: 001720

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020-
MGTENPGRSSFPARPSASPFASAPPTVTPFSSAGPVVGSEASSFRPAPPASPQTAAPFMSAAAGVGSDSSGFRPSTPQTRFNDPSVSSSPITYVPPTSGPFQRFPTPQFPPVAQAPPVRGPPVGLPPVSHPIGQVPNPPVPLRAQPPPVPMGSPVQRANFAPSGVNVPQPLSDSSFSASRPNSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFPSHPRSYVPPPPTSASSFPAHQGGYVPPGVQSQHSGPPVGVIQGLAEDFSSLSFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQNP
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHcccccEEEEEcccccccccccccEEEEccccEEEccccEEEEccccccccccHHHHcccccccccccccccccccccEEEEEcccccccccccccEEEEEEEccHHHHHHcHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEEEcccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccEEEEEEEEccEEcccccEEEcccccccEEEEEEEEEccccccccEEEEEEEEEEEccccEEEEEEEEcccccccHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHcccccccccccccccHHHHHHHHHccccHHHHHHHHcccEEEccccccccccccccccccccccccHHHccccccEEEEEcccEEEEEEcccccHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHccccccccccccHHHHHHHHHHHHHccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEEcHccccccHHHHHHccccEEEEEcccHcccccccHHHHHcEcHHHHHHccccEEEEEcccccccccHHHHHcccccccccccccccHHcccEEEEEccHHHccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccEEEEEEcccccccccEEEEccccccccccccccEEcHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHccEEEEEEEEccccEEHHEHcccccccccEEEEcccccccccHHHHHHHHHHHcccccccEEEEEEEccccEEEEcccccEEEcccccccccccccccEEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHccccHHcccHHcccccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccc
mgtenpgrssfparpsaspfasapptvtpfssagpvvgseassfrpappaspqtaapfmsaaagvgsdssgfrpstpqtrfndpsvssspityvpptsgpfqrfptpqfppvaqappvrgppvglppvshpigqvpnppvplraqpppvpmgspvqranfapsgvnvpqplsdssfsasrpnsppdssypfarptpqqplpgyvttqpnavsqgptmpssfpshprsyvpppptsassfpahqggyvppgvqsqhsgppvgVIQGLAedfsslsfgsipgsiepgidlkslprpldgdvepsslaetyplnchsrylrlttsaipnsqslvsrwhlplgavvcplaeppegnlficrtyvnpyvtftdagRKWRCNICALlndvpgdyfahldatgrrididqrpeltkgsvefvapteymvrppmpplyFFLIDVSISAIRSGMLEVVAQTIKSCLdelpgfprtqigfitfdsTIHFynmkssltqpqmmvisdlddifvplpddllvnlseSRSVVDTLLDslpsmfqdnmnvesafgPALKAAFMVMSRLGGKLLifqnslpslgvgclklrgddlrvygtdkehslripedpfykQMAADLTKFQIAVNVYAfsdkytdiasLGTLAkytggqvyyypsfqstthgerLRHELSRDLTRETAWEAVMRIRcgkgvrftnyhgnfmlrstdllalpavdcDKAYAMQLSLEETLLTTQTVYFQVALLYTAscgerrirvhtlaapvvsnlsdmyqqadTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLgsrmiypeslkflplYCLAickstpirggyadvtLDERCAAGYTMMALPVKKLLKLLYPClirvdehllkpsaqldEYKNIMKRLPLVAesldsrglyifddgFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEdqiggsngyADWIMQIHRQVLQNP
mgtenpgrssfparpsaSPFASAPPTVTPFSSAGPVVGSEASSFRPAPPASPQTAAPFMSAAAGVGSDSSGFRPSTPqtrfndpsvsssPITYVPPTSGPFQRFPTPQFPPVAQAPPVRGPPVGLPPVSHPIGQVPNPPVPLRAQPPPVPMGSPVQRANFAPSGVNVPQPLSDSSFSASRPNSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFPSHPRSYVPPPPTSASSFPAHQGGYVPPGVQSQHSGPPVGVIQGLAEDFSSLSFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRrididqrpeltkgsvefvapteymvrPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGtdkehslripedpFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPsfqstthgerLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTlshkledarNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQNP
MGTENPGrssfparpsaspfasappTVTPFSSAGPVVGseassfrpappaspqtaapFMsaaagvgsdssgFRPSTPQTRFNDPSVSSSPITYVPPTSGpfqrfptpqfppvaqappvrgppvglppvSHPIGQvpnppvplraqpppvpMGSPVQRANFAPSGVNVPQPLSDSSFSASRPNSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFpshprsyvpppptsassfpaHQGGYVPPGVQSQHSGPPVGVIQGLAEDFSSLSFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMqlsleetllttqtVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVkkllkllYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQNP
**********************************************************************************************************************************************************************************************************************************************************************I*GL***************************************ETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVML*********KLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQV****
*********************************************************************************************************************************************************************************************************************************************************************************************************DVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQ***MVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVG*******************LRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKT*******ARNAVQLRLVKALKEYRN*************YPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVL***
***********************PPTVTPFS***********************AAPFMSA****************************PITYVPPTSGPFQRFPTPQFPPVAQAPPVRGPPVGLPPVSHPIGQVPNPPVPLRAQPPPVPMGSPVQRANFAPSGVNVPQ********************PFARPTPQQPLPGYVTTQPN****************************SFPAHQGGYVPPGVQSQHSGPPVGVIQGLAEDFSSLSFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQNP
********************************************************************************************************************************************************************************************************PGYVT*************SSFPSHPRSYVPPPPTSASSFPAHQGGYVPPGV*************************S*PGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLK*********GTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQ**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGTENPGRSSFPARPSASPFASAPPTVTPFSSAGPVVGSEASSFRPAPPASPQTAAPFMSAAAGVGSDSSGFRPSTPQTRFNDPSVSSSPITYVPPTSGPFQRFPTPQFPPVAQAPPVRGPPVGLPPVSHPIGQVPNPPVPLRAQPPPVPMGSPVQRANFAPSGVNVPQPLSDSSFSASRPNSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFPSHPRSYVPPPPTSASSFPAHQGGYVPPGVQSQHSGPPVGVIQGLAEDFSSLSFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1021 2.2.26 [Sep-21-2011]
Q9SFU01038 Protein transport protein yes no 0.974 0.958 0.675 0.0
Q3U2P11090 Protein transport protein yes no 0.690 0.646 0.396 1e-153
O954861093 Protein transport protein yes no 0.811 0.758 0.366 1e-153
A6QNT81099 Protein transport protein yes no 0.779 0.724 0.382 1e-153
O954871268 Protein transport protein no no 0.692 0.557 0.389 1e-149
Q9M2911096 Protein transport protein no no 0.682 0.635 0.373 1e-138
Q54U611013 Protein transport protein yes no 0.683 0.689 0.370 1e-137
Q1E6U9932 Protein transport protein N/A no 0.770 0.844 0.359 1e-134
Q9M0811080 Protein transport protein no no 0.909 0.860 0.335 1e-134
Q4P9K4995 Protein transport protein N/A no 0.895 0.918 0.337 1e-131
>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 Back     alignment and function desciption
 Score = 1373 bits (3554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1063 (67%), Positives = 819/1063 (77%), Gaps = 68/1063 (6%)

Query: 1    MGTENPGRSSFPARPSASPFASAPPTVTPFSSAGPVVGSEASSFRPAPPASPQTAAPFMS 60
            MGTEN G  +FPARP++SPFASAPP   P  S GP  GSEA  FRP  P++ Q   PF +
Sbjct: 1    MGTENQGYPNFPARPASSPFASAPPPGIPPQSGGPPTGSEAVGFRPFTPSASQPTRPFTA 60

Query: 61   AAAGVGSDSSGFRPSTPQTRFND---------PSVSSSPITYVPPTSGPFQRFPTPQFPP 111
            +           RP  P    +           S S     Y PP   PFQRFP+P FP 
Sbjct: 61   SGPPPAPPVGTMRPGQPSPFVSQIPGSRPPPPSSNSFPSPAYGPPGGAPFQRFPSPPFPT 120

Query: 112  VAQAPPVRGPPVGLPPVSHPIGQVPNPPVPLRAQPP--PVPMGSPVQRANFAPSGVNVPQ 169
                P    PP  L       G + +PP+ LR Q P  PV MG P Q       G N   
Sbjct: 121  TQNPPQGPPPPQTL------AGHL-SPPMSLRPQQPMAPVAMGPPPQSTTSGLPGANAYP 173

Query: 170  PLSDSSFSASRPNSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFPSHPRSYV 229
            P +D    A              RP  QQ +P    + P      P    SFP +P   V
Sbjct: 174  PATDYHMPA--------------RPGFQQSMPPVTPSYPGVGGSQP----SFPGYPSKQV 215

Query: 230  PPPPT------------SASSFPAHQGGYVP-PGVQSQHS-----GPPVGVIQGLAEDFS 271
               PT              SS+P H GG+   P + +Q +      PP   +QGL EDF+
Sbjct: 216  LQAPTPFQTSQGPPGPPPVSSYPPHTGGFAQRPNMAAQQNLHPNYAPPPSNVQGLTEDFN 275

Query: 272  SLSFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLV 331
            SLS  SIPGS+EPG+D KS PRPLDGDVEP+S AE YP+NCHSRYLRLTTSAIPNSQSL 
Sbjct: 276  SLSLSSIPGSLEPGLDHKSFPRPLDGDVEPNSFAEMYPMNCHSRYLRLTTSAIPNSQSLA 335

Query: 332  SRWHLPLGAVVCPLAEPPEGNLF--------------ICRTYVNPYVTFTDAGRKWRCNI 377
            SRWHLPLGAVVCPLAE PEG                  CRTYVNP+VTFTD+GRKWRCNI
Sbjct: 336  SRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRRCRTYVNPFVTFTDSGRKWRCNI 395

Query: 378  CALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVS 437
            C++LNDVPG+YF+HLDATGRR+D+DQRPELTKGSVE +APTEYMVRPPMPP+YFFLIDVS
Sbjct: 396  CSMLNDVPGEYFSHLDATGRRMDMDQRPELTKGSVEIIAPTEYMVRPPMPPIYFFLIDVS 455

Query: 438  ISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDL 497
            ISA +SGMLEVVAQTIKSCLD LPG+PRTQIGFIT+DST+HFYNMKSSL+QPQMMV+SDL
Sbjct: 456  ISATKSGMLEVVAQTIKSCLDNLPGYPRTQIGFITYDSTLHFYNMKSSLSQPQMMVVSDL 515

Query: 498  DDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGK 557
            DDIFVPLPDDLLVNLSESR+VVD  LDSLP MFQDN NVESAFGPAL+AAFMVM++LGGK
Sbjct: 516  DDIFVPLPDDLLVNLSESRTVVDAFLDSLPLMFQDNFNVESAFGPALRAAFMVMNQLGGK 575

Query: 558  LLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYA 617
            LLIFQNSLPSLG G LKLRGDD RVYGTDKE++LR+ EDPFYKQMAAD TKFQI +NVYA
Sbjct: 576  LLIFQNSLPSLGAGRLKLRGDDPRVYGTDKEYALRVAEDPFYKQMAADCTKFQIGINVYA 635

Query: 618  FSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCG 677
            FSDKYTDIASLGTLAKYTGGQVYYYP FQS+ HG++LRHEL+RDLTRETAWEAVMRIRCG
Sbjct: 636  FSDKYTDIASLGTLAKYTGGQVYYYPGFQSSVHGDKLRHELARDLTRETAWEAVMRIRCG 695

Query: 678  KGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCG 737
            KG+RF++YHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLT+QTVYFQVALLYTASCG
Sbjct: 696  KGIRFSSYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTSQTVYFQVALLYTASCG 755

Query: 738  ERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKA 797
            ERRIRVHT  APVV++L +MY+QADTG+IVS+++RLAIEK+LS KL+DARNA+Q ++VKA
Sbjct: 756  ERRIRVHTSVAPVVTDLGEMYRQADTGSIVSLYARLAIEKSLSAKLDDARNAIQQKIVKA 815

Query: 798  LKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMM 857
            LKEYRNL+AVQHRLGSR++YPESLKFLPLY LAI KSTP+ GG AD +LDERCAAG+TMM
Sbjct: 816  LKEYRNLHAVQHRLGSRLVYPESLKFLPLYGLAITKSTPLLGGPADTSLDERCAAGFTMM 875

Query: 858  ALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRF 917
            ALPVKKLLKLLYP L RVDE LLKPSA  D++K++++RLPL AESLDSRGLYI+DDGFR 
Sbjct: 876  ALPVKKLLKLLYPNLFRVDEWLLKPSAAHDDFKDVLRRLPLAAESLDSRGLYIYDDGFRL 935

Query: 918  VLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQ 977
            VLWFGRMLSPDIA NLLG +FAA+LS+V  +EQ+N MS+KL+ ++KKLRE DPSY+ +C 
Sbjct: 936  VLWFGRMLSPDIAKNLLGVDFAADLSRVTFQEQENGMSKKLMRLVKKLRESDPSYHPMCF 995

Query: 978  LVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQN 1020
            LVRQGEQPREGFLLL NL+EDQ+GGS+GY DWI+Q+HRQV QN
Sbjct: 996  LVRQGEQPREGFLLLRNLIEDQMGGSSGYVDWILQLHRQVQQN 1038
Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1 Back     alignment and function description
>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2 Back     alignment and function description
>sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 Back     alignment and function description
>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2 Back     alignment and function description
>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3 Back     alignment and function description
>sp|Q54U61|SEC24_DICDI Protein transport protein SEC24 OS=Dictyostelium discoideum GN=sec24 PE=3 SV=1 Back     alignment and function description
>sp|Q1E6U9|SEC24_COCIM Protein transport protein SEC24 OS=Coccidioides immitis (strain RS) GN=SEC24 PE=3 SV=2 Back     alignment and function description
>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3 Back     alignment and function description
>sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC24 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1021
2254615701052 PREDICTED: protein transport protein Sec 0.992 0.962 0.763 0.0
2555846391031 Protein transport protein Sec24A, putati 0.975 0.966 0.744 0.0
2241128731037 predicted protein [Populus trichocarpa] 0.980 0.965 0.732 0.0
2240982221043 predicted protein [Populus trichocarpa] 0.982 0.961 0.728 0.0
302142943944 unnamed protein product [Vitis vinifera] 0.903 0.976 0.726 0.0
4494359521031 PREDICTED: protein transport protein Sec 0.977 0.967 0.718 0.0
4495086331031 PREDICTED: protein transport protein Sec 0.977 0.967 0.718 0.0
3565710521026 PREDICTED: protein transport protein Sec 0.968 0.963 0.684 0.0
2978334881036 hypothetical protein ARALYDRAFT_478029 [ 0.973 0.959 0.675 0.0
306801291038 sec24-like transport protein [Arabidopsi 0.974 0.958 0.675 0.0
>gi|225461570|ref|XP_002282857.1| PREDICTED: protein transport protein Sec24-like At3g07100-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1594 bits (4127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 808/1058 (76%), Positives = 883/1058 (83%), Gaps = 45/1058 (4%)

Query: 1    MGTENPGRSSFPARPSASPFASAPPTVTPFSSAGPVVGSEASSFRPAPPASPQTAAPFMS 60
            MGTENP R SFPARP+A+PFA+ P    PF S+GPVVGS+AS FRP P ++PQ A PF+S
Sbjct: 1    MGTENPNRPSFPARPAATPFAAGPQPTMPFLSSGPVVGSQASGFRPTPSSTPQAAMPFLS 60

Query: 61   AAAGVGSDSSGFRPSTPQTRFNDPSVSSSPITYVPPTSGPFQRFPTPQFPPVAQAPPVRG 120
            +   VG ++SGFRP TP  RF+DPS+ S P    PPT GPFQRF TPQ P  AQAPP R 
Sbjct: 61   SGPVVGPETSGFRP-TPPGRFSDPSLPSVPSANAPPTLGPFQRFTTPQNPSTAQAPPARP 119

Query: 121  PPVGLPPVSHPI----GQVPNPPVPLR--AQPPPVPMGSPVQRANFAPSGVNVPQPLSDS 174
             PVG P    P+    GQVP  PV  R  +Q P VPMGSP Q  N AP   N PQPL DS
Sbjct: 120  LPVGQPVFPPPVQPPAGQVP--PVSFRPQSQLPSVPMGSPPQSMNSAPLRANAPQPLLDS 177

Query: 175  SFSASRP-----NSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFPSHPRSYV 229
            SFSASRP       PP+S+YP AR   Q   PGY + Q NAV Q P + S F +    Y 
Sbjct: 178  SFSASRPPFQPSFLPPESTYPAARANLQPSFPGYPSKQSNAVPQAPAVQSPFLTQQGGYA 237

Query: 230  PPPPTSASSFPAHQGGYVPP-------GVQS----QH--SGPPVGVIQGLAEDFSSLSFG 276
              PPTS+  F A  GGY+PP       G+ S    QH  +GPP+G +QGL EDFSSLS G
Sbjct: 238  AAPPTSSPPFLAQPGGYIPPPPVAAPLGLHSREQMQHPGTGPPIGAVQGLIEDFSSLSVG 297

Query: 277  SIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHL 336
            S+PGSI+ GID K+LPRPL+GDVEP+S AE YP+NCHSRYLRLTTS IPNSQSLVSRWHL
Sbjct: 298  SVPGSIDLGIDSKALPRPLEGDVEPNSFAEMYPMNCHSRYLRLTTSGIPNSQSLVSRWHL 357

Query: 337  PLGAVVCPLAEPPEGNLF--------------ICRTYVNPYVTFTDAGRKWRCNICALLN 382
            PLGAVVCPLA PP+G                  CRTYVNPYVTFTD GRKWRCNIC+LLN
Sbjct: 358  PLGAVVCPLAVPPDGEEVPIVNFAATGIIRCRRCRTYVNPYVTFTDGGRKWRCNICSLLN 417

Query: 383  DVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIR 442
            DV GDYF+HLDA GRRID+DQRPEL KGSVEFVAPTEYMVRPPMPPLYFFLIDVS+SA+R
Sbjct: 418  DVSGDYFSHLDAIGRRIDLDQRPELIKGSVEFVAPTEYMVRPPMPPLYFFLIDVSLSAVR 477

Query: 443  SGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFV 502
            SGMLEVVAQTI+SCLDELPG  RTQIGFITFDSTIHFYNMKSSLTQPQMMV+SDLDDIFV
Sbjct: 478  SGMLEVVAQTIRSCLDELPGSTRTQIGFITFDSTIHFYNMKSSLTQPQMMVVSDLDDIFV 537

Query: 503  PLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQ 562
            PLPDDLLVNLSESRSVV+T LDSLPSMFQDN+N+ESAFGPALKAAFMVMS+LGGKLLIFQ
Sbjct: 538  PLPDDLLVNLSESRSVVETFLDSLPSMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQ 597

Query: 563  NSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKY 622
            N+LPSLGVG LKLRGDDLRVYGTDKEH+LR+PEDPFYKQMAADLTK+QIAVN+YAFSDKY
Sbjct: 598  NTLPSLGVGRLKLRGDDLRVYGTDKEHALRLPEDPFYKQMAADLTKYQIAVNIYAFSDKY 657

Query: 623  TDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRF 682
            TDIASLGTLAKYTGGQVYYYPSF S  H +RLRHELSRDLTRETAWEAVMRIRCGKGVRF
Sbjct: 658  TDIASLGTLAKYTGGQVYYYPSFLSIIHKDRLRHELSRDLTRETAWEAVMRIRCGKGVRF 717

Query: 683  TNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIR 742
            T+YHGNFMLRSTDLLALPAVDCDKA+AMQL LEETLLTTQTVYFQVALLYT+S GERRIR
Sbjct: 718  TSYHGNFMLRSTDLLALPAVDCDKAFAMQLCLEETLLTTQTVYFQVALLYTSSSGERRIR 777

Query: 743  VHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYR 802
            VHT AAPVV++L +MY+QADTGA+VS+F RLAIEKTLSHKLEDARN+VQLRLVKA KEYR
Sbjct: 778  VHTAAAPVVADLGEMYRQADTGAVVSLFCRLAIEKTLSHKLEDARNSVQLRLVKAFKEYR 837

Query: 803  NLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVK 862
            NLYAVQHRLG RMIYPESLK LPLY LA+CKSTP+RGGYAD  LDERCAAGYTMM LPVK
Sbjct: 838  NLYAVQHRLGGRMIYPESLKLLPLYALALCKSTPLRGGYADAQLDERCAAGYTMMTLPVK 897

Query: 863  KLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFG 922
            +LLKLLYP LIR+DE+LLKP+AQ DE    +KRLPLVAESLDSRGLYI+DDGFRFV+WFG
Sbjct: 898  RLLKLLYPSLIRIDEYLLKPTAQADE----LKRLPLVAESLDSRGLYIYDDGFRFVIWFG 953

Query: 923  RMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQG 982
            RMLSP+IAMNLLG +FAA+LSKV L E DNEMSRKL+GILKK RE DPSYYQLC LVRQG
Sbjct: 954  RMLSPEIAMNLLGQDFAADLSKVSLYEHDNEMSRKLMGILKKFRESDPSYYQLCHLVRQG 1013

Query: 983  EQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQN 1020
            EQPREGF LLANLVEDQIGG+NGYADWI+QIHRQV QN
Sbjct: 1014 EQPREGFFLLANLVEDQIGGTNGYADWILQIHRQVQQN 1051

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255584639|ref|XP_002533043.1| Protein transport protein Sec24A, putative [Ricinus communis] gi|223527181|gb|EEF29351.1| Protein transport protein Sec24A, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224112873|ref|XP_002316316.1| predicted protein [Populus trichocarpa] gi|222865356|gb|EEF02487.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224098222|ref|XP_002311138.1| predicted protein [Populus trichocarpa] gi|222850958|gb|EEE88505.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302142943|emb|CBI20238.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435952|ref|XP_004135758.1| PREDICTED: protein transport protein Sec24-like At3g07100-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449508633|ref|XP_004163368.1| PREDICTED: protein transport protein Sec24-like At3g07100-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571052|ref|XP_003553695.1| PREDICTED: protein transport protein Sec24-like At3g07100-like [Glycine max] Back     alignment and taxonomy information
>gi|297833488|ref|XP_002884626.1| hypothetical protein ARALYDRAFT_478029 [Arabidopsis lyrata subsp. lyrata] gi|297330466|gb|EFH60885.1| hypothetical protein ARALYDRAFT_478029 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30680129|ref|NP_187366.2| sec24-like transport protein [Arabidopsis thaliana] gi|78099801|sp|Q9SFU0.2|SC24A_ARATH RecName: Full=Protein transport protein Sec24-like At3g07100 gi|22531076|gb|AAM97042.1| putative Sec24-like COPII protein [Arabidopsis thaliana] gi|23197930|gb|AAN15492.1| putative Sec24-like COPII protein [Arabidopsis thaliana] gi|332640977|gb|AEE74498.1| sec24-like transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1021
TAIR|locus:20985451038 ERMO2 "AT3G07100" [Arabidopsis 0.841 0.827 0.710 0.0
UNIPROTKB|A6QNT81099 SEC24A "Protein transport prot 0.742 0.689 0.385 2.7e-141
RGD|13094511089 Sec24a "SEC24 family, member A 0.740 0.694 0.378 1.3e-139
UNIPROTKB|O954861093 SEC24A "Protein transport prot 0.829 0.774 0.354 2.7e-139
UNIPROTKB|F1RHC71144 SEC24A "Uncharacterized protei 0.741 0.661 0.379 3.5e-139
MGI|MGI:19246211090 Sec24a "Sec24 related gene fam 0.740 0.693 0.380 4.4e-139
UNIPROTKB|E1BSA71100 SEC24A "Uncharacterized protei 0.739 0.686 0.376 5e-138
UNIPROTKB|J9P4C31100 SEC24A "Uncharacterized protei 0.738 0.685 0.377 1.7e-137
UNIPROTKB|B7ZKM81298 SEC24B "SEC24B protein" [Homo 0.823 0.647 0.360 3.2e-136
UNIPROTKB|O954871268 SEC24B "Protein transport prot 0.824 0.664 0.360 3.2e-136
TAIR|locus:2098545 ERMO2 "AT3G07100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3230 (1142.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 636/895 (71%), Positives = 724/895 (80%)

Query:   151 MGSPVQRANFAPSGVNVPQPLSDSSFSASRP----NSPPDS-SYPFARPTPQQPLPGYVT 205
             MG P Q       G N   P +D    A RP    + PP + SYP    + Q   PGY +
Sbjct:   155 MGPPPQSTTSGLPGANAYPPATDYHMPA-RPGFQQSMPPVTPSYPGVGGS-QPSFPGYPS 212

Query:   206 TQPNAVSQGPTMPSSFXXXXXXXXXXXXXXXXXXXXHQGGYVP-PGVQSQHS-----GPP 259
              Q   V Q PT P                       H GG+   P + +Q +      PP
Sbjct:   213 KQ---VLQAPT-PFQ-----TSQGPPGPPPVSSYPPHTGGFAQRPNMAAQQNLHPNYAPP 263

Query:   260 VGVIQGLAEDFSSLSFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRL 319
                +QGL EDF+SLS  SIPGS+EPG+D KS PRPLDGDVEP+S AE YP+NCHSRYLRL
Sbjct:   264 PSNVQGLTEDFNSLSLSSIPGSLEPGLDHKSFPRPLDGDVEPNSFAEMYPMNCHSRYLRL 323

Query:   320 TTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL--FI------------CRTYVNPYVT 365
             TTSAIPNSQSL SRWHLPLGAVVCPLAE PEG     I            CRTYVNP+VT
Sbjct:   324 TTSAIPNSQSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRRCRTYVNPFVT 383

Query:   366 FTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPP 425
             FTD+GRKWRCNIC++LNDVPG+YF+HLDATGRR+D+DQRPELTKGSVE +APTEYMVRPP
Sbjct:   384 FTDSGRKWRCNICSMLNDVPGEYFSHLDATGRRMDMDQRPELTKGSVEIIAPTEYMVRPP 443

Query:   426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSS 485
             MPP+YFFLIDVSISA +SGMLEVVAQTIKSCLD LPG+PRTQIGFIT+DST+HFYNMKSS
Sbjct:   444 MPPIYFFLIDVSISATKSGMLEVVAQTIKSCLDNLPGYPRTQIGFITYDSTLHFYNMKSS 503

Query:   486 LTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALK 545
             L+QPQMMV+SDLDDIFVPLPDDLLVNLSESR+VVD  LDSLP MFQDN NVESAFGPAL+
Sbjct:   504 LSQPQMMVVSDLDDIFVPLPDDLLVNLSESRTVVDAFLDSLPLMFQDNFNVESAFGPALR 563

Query:   546 AAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAAD 605
             AAFMVM++LGGKLLIFQNSLPSLG G LKLRGDD RVYGTDKE++LR+ EDPFYKQMAAD
Sbjct:   564 AAFMVMNQLGGKLLIFQNSLPSLGAGRLKLRGDDPRVYGTDKEYALRVAEDPFYKQMAAD 623

Query:   606 LTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRE 665
              TKFQI +NVYAFSDKYTDIASLGTLAKYTGGQVYYYP FQS+ HG++LRHEL+RDLTRE
Sbjct:   624 CTKFQIGINVYAFSDKYTDIASLGTLAKYTGGQVYYYPGFQSSVHGDKLRHELARDLTRE 683

Query:   666 TAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMXXXXXXXXXXXXXVY 725
             TAWEAVMRIRCGKG+RF++YHGNFMLRSTDLLALPAVDCDKAYAM             VY
Sbjct:   684 TAWEAVMRIRCGKGIRFSSYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTSQTVY 743

Query:   726 FQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLED 785
             FQVALLYTASCGERRIRVHT  APVV++L +MY+QADTG+IVS+++RLAIEK+LS KL+D
Sbjct:   744 FQVALLYTASCGERRIRVHTSVAPVVTDLGEMYRQADTGSIVSLYARLAIEKSLSAKLDD 803

Query:   786 ARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVT 845
             ARNA+Q ++VKALKEYRNL+AVQHRLGSR++YPESLKFLPLY LAI KSTP+ GG AD +
Sbjct:   804 ARNAIQQKIVKALKEYRNLHAVQHRLGSRLVYPESLKFLPLYGLAITKSTPLLGGPADTS 863

Query:   846 LDERCAAGYTMMALPVXXXXXXXYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDS 905
             LDERCAAG+TMMALPV       YP L RVDE LLKPSA  D++K++++RLPL AESLDS
Sbjct:   864 LDERCAAGFTMMALPVKKLLKLLYPNLFRVDEWLLKPSAAHDDFKDVLRRLPLAAESLDS 923

Query:   906 RGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEMSRKLLGILKKL 965
             RGLYI+DDGFR VLWFGRMLSPDIA NLLG +FAA+LS+V  +EQ+N MS+KL+ ++KKL
Sbjct:   924 RGLYIYDDGFRLVLWFGRMLSPDIAKNLLGVDFAADLSRVTFQEQENGMSKKLMRLVKKL 983

Query:   966 REQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQN 1020
             RE DPSY+ +C LVRQGEQPREGFLLL NL+EDQ+GGS+GY DWI+Q+HRQV QN
Sbjct:   984 RESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQMGGSSGYVDWILQLHRQVQQN 1038
GO:0005215 "transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0030127 "COPII vesicle coat" evidence=IEA
GO:0080119 "ER body organization" evidence=IMP
GO:0005829 "cytosol" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
UNIPROTKB|A6QNT8 SEC24A "Protein transport protein Sec24A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1309451 Sec24a "SEC24 family, member A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O95486 SEC24A "Protein transport protein Sec24A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHC7 SEC24A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1924621 Sec24a "Sec24 related gene family, member A (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BSA7 SEC24A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9P4C3 SEC24A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZKM8 SEC24B "SEC24B protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O95487 SEC24B "Protein transport protein Sec24B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SFU0SC24A_ARATHNo assigned EC number0.67540.97450.9585yesno
Q0PVD8SEC24_PICPANo assigned EC number0.32570.80700.8583yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00102048
hypothetical protein (1037 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_XV0440
hypothetical protein (301 aa)
    ••• 0.840
estExt_fgenesh4_pg.C_LG_X0913
SubName- Full=Putative uncharacterized protein; (301 aa)
    ••• 0.839
estExt_fgenesh4_pg.C_LG_IX1026
hypothetical protein (1105 aa)
     •• 0.811
gw1.I.1579.1
hypothetical protein (1105 aa)
     •• 0.809

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1021
COG5028861 COG5028, COG5028, Vesicle coat complex COPII, subu 1e-171
cd01479244 cd01479, Sec24-like, Sec24-like: Protein and membr 1e-117
pfam04811241 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain 4e-99
cd01468239 cd01468, trunk_domain, trunk domain 6e-95
PTZ003951560 PTZ00395, PTZ00395, Sec24-related protein; Provisi 6e-41
pfam0803386 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom 1e-30
pfam04815103 pfam04815, Sec23_helical, Sec23/Sec24 helical doma 3e-22
pfam0481039 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger 1e-13
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 6e-12
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 9e-12
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 3e-11
PLN00162761 PLN00162, PLN00162, transport protein sec23; Provi 3e-10
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 7e-09
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 1e-08
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-08
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 9e-08
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 1e-07
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 1e-07
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 4e-07
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 5e-07
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 5e-07
COG5047755 COG5047, SEC23, Vesicle coat complex COPII, subuni 8e-07
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 9e-07
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 6e-06
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 9e-06
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 1e-05
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-05
pfam05044908 pfam05044, Prox1, Homeobox prospero-like protein ( 1e-05
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 2e-05
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 3e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 4e-05
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 7e-05
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 7e-05
pfam04652315 pfam04652, DUF605, Vta1 like 8e-05
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 9e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 1e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-04
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 3e-04
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 3e-04
pfam04652315 pfam04652, DUF605, Vta1 like 6e-04
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 6e-04
PLN03209576 PLN03209, PLN03209, translocon at the inner envelo 7e-04
pfam04652315 pfam04652, DUF605, Vta1 like 8e-04
PHA033771000 PHA03377, PHA03377, EBNA-3C; Provisional 8e-04
PHA03379935 PHA03379, PHA03379, EBNA-3A; Provisional 9e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 0.001
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.001
pfam05518753 pfam05518, Totivirus_coat, Totivirus coat protein 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 0.002
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 0.002
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 0.002
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 0.002
PRK12799421 PRK12799, motB, flagellar motor protein MotB; Revi 0.002
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 0.003
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.004
pfam0062676 pfam00626, Gelsolin, Gelsolin repeat 0.004
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  523 bits (1349), Expect = e-171
 Identities = 290/881 (32%), Positives = 451/881 (51%), Gaps = 74/881 (8%)

Query: 188  SYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFPSHPRSYVPPPPTS-----------A 236
            S       PQ     +     +  S  P    +  S  +  +PP  T             
Sbjct: 2    SQHKKGVYPQAQSQVHTGAASSKKSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQ 61

Query: 237  SSFPAHQGG-------YVPPGVQSQHSGPPVGVIQGLA--------EDFSSLSFGSIPGS 281
            ++   H  G        + P  QSQ                            F   P  
Sbjct: 62   AATAMHNTGANNPAPSVMSPAFQSQQKFSSPYGGSMADGTAPKPTNPLVPVDLFEDQPPP 121

Query: 282  IEPGIDLKSLPR----PLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLP 337
            I    DL   P     PL  +   S  +     NC  +Y+R T  AIP +  L+ +  +P
Sbjct: 122  IS---DLFLPPPPIVPPLTTNFVGSEQS-----NCSPKYVRSTMYAIPETNDLLKKSKIP 173

Query: 338  LGAVVCPLAE------PPEGNLFI-------CRTYVNPYVTFTDAGRKWRCNICALLNDV 384
             G V+ P  E      P              CR+Y+NP+V F + GRKWRCNIC   NDV
Sbjct: 174  FGLVIRPFLELYPEEDPVPLVEDGSIVRCRRCRSYINPFVQFIEQGRKWRCNICRSKNDV 233

Query: 385  PGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSG 444
            P  +         R D   RPEL  G V+F+AP EY +R P PP+Y FLIDVS  AI++G
Sbjct: 234  PEGFDNPSGPNDPRSDRYSRPELKSGVVDFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNG 293

Query: 445  MLEVVAQTIKSCLDELPGF-PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVP 503
            +++   + I   LD++P F PRT+I  I FDS++HF+ +   L + QM+++SDLD+ F+P
Sbjct: 294  LVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDE-QMLIVSDLDEPFLP 352

Query: 504  LP-DDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQ 562
             P    ++ L   + +++TLLD +P +FQDN + ++A GPALKAA  ++   GGK+++F 
Sbjct: 353  FPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFL 412

Query: 563  NSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKY 622
            ++LP++G+G L+LR         DKE SL   +D FYK+ A + +K  I+V+++  S+ Y
Sbjct: 413  STLPNMGIGKLQLR--------EDKESSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDY 464

Query: 623  TDIASLGTLAKYTGGQVYYYPSFQSTTH--GERLRHELSRDLTRETAWEAVMRIRCGKGV 680
             D+A+L  L +YTGGQ Y+YP+F +T      +L ++L   L+ E  +EAVMR+RC  G+
Sbjct: 465  IDVATLSHLCRYTGGQTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGL 524

Query: 681  RFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERR 740
            R ++++GNF  RS+DL A   +  D +  ++ S++E L+T+  VYFQVALLYT + GERR
Sbjct: 525  RVSSFYGNFFNRSSDLCAFSTMPRDTSLLVEFSIDEKLMTSD-VYFQVALLYTLNDGERR 583

Query: 741  IRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKE 800
            IRV  L+ P  S++ ++Y  AD  AI  + ++ A  K L+  L++AR  +   +V  LK 
Sbjct: 584  IRVVNLSLPTSSSIREVYASADQLAIACILAKKASTKALNSSLKEARVLINKSMVDILKA 643

Query: 801  YRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALP 860
            Y+      +   +++  P +LK LPL  LA+ KS+  R G      D R +A   + +LP
Sbjct: 644  YKKELVKSN-TSTQLPLPANLKLLPLLMLALLKSSAFRSGS--TPSDIRISALNRLTSLP 700

Query: 861  VKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVA--ESLDSRGLYIFDDGFRFV 918
            +K+L++ +YP L  +  H +   A L +   ++   P+ A    L+S GLY+ D G +  
Sbjct: 701  LKQLMRNIYPTLYAL--HDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIF 758

Query: 919  LWFGRMLSPDIAMNLLGSEFAAELS--KVMLREQDNEMSRKLLGILKKLREQDPSYYQLC 976
            LWFG+   P +  +L G +  +++   K  L    NE + ++  I+ +LR  +       
Sbjct: 759  LWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTLPL 818

Query: 977  QLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQV 1017
             LVR G  P       + LVED+      Y D++  +H ++
Sbjct: 819  VLVRGGGDPSLRLWFFSTLVEDKTLNIPSYLDYLQILHEKI 859

Length = 861
>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain Back     alignment and domain information
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain Back     alignment and domain information
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional Back     alignment and domain information
>gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain Back     alignment and domain information
>gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain Back     alignment and domain information
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1) Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional Back     alignment and domain information
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1021
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 100.0
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 100.0
PTZ003951560 Sec24-related protein; Provisional 100.0
COG5028861 Vesicle coat complex COPII, subunit SEC24/subunit 100.0
PLN00162761 transport protein sec23; Provisional 100.0
KOG1986745 consensus Vesicle coat complex COPII, subunit SEC2 100.0
COG5047755 SEC23 Vesicle coat complex COPII, subunit SEC23 [I 100.0
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 100.0
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 100.0
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 100.0
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 100.0
PF04815103 Sec23_helical: Sec23/Sec24 helical domain; InterPr 99.86
PF0803396 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP 99.83
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 99.19
PRK13685326 hypothetical protein; Provisional 98.75
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.7
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 98.51
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.5
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.48
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.48
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.47
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 98.47
TIGR00868863 hCaCC calcium-activated chloride channel protein 1 98.42
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 98.35
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 98.32
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.28
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.27
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 98.23
cd01470198 vWA_complement_factors Complement factors B and C2 98.2
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.16
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 98.09
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 98.03
PF0062676 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel 97.98
PF13768155 VWA_3: von Willebrand factor type A domain 97.96
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 97.94
PTZ00441576 sporozoite surface protein 2 (SSP2); Provisional 97.93
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 97.9
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 97.89
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 97.86
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 97.84
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 97.82
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 97.79
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 97.75
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 97.74
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 97.73
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 97.72
PHA032473151 large tegument protein UL36; Provisional 97.71
PRK13406584 bchD magnesium chelatase subunit D; Provisional 97.71
PF00092178 VWA: von Willebrand factor type A domain; InterPro 97.67
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 97.6
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 97.59
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 97.43
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 97.37
smart0026290 GEL Gelsolin homology domain. Gelsolin/severin/vil 97.22
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 97.07
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 97.02
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 96.91
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 96.86
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 96.86
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.71
KOG0443827 consensus Actin regulatory proteins (gelsolin/vill 96.7
COG4245207 TerY Uncharacterized protein encoded in toxicity p 96.53
KOG2884259 consensus 26S proteasome regulatory complex, subun 96.31
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 96.16
TIGR00578584 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit 95.57
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 94.79
COG5148243 RPN10 26S proteasome regulatory complex, subunit R 94.78
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 94.73
KOG0443 827 consensus Actin regulatory proteins (gelsolin/vill 94.15
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 93.5
PF03731224 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte 92.8
PF03850276 Tfb4: Transcription factor Tfb4; InterPro: IPR0046 92.5
TIGR00627279 tfb4 transcription factor tfb4. This family is bas 92.34
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 91.67
COG2425437 Uncharacterized protein containing a von Willebran 90.84
KOG2807378 consensus RNA polymerase II transcription initiati 90.51
KOG4849498 consensus mRNA cleavage factor I subunit/CPSF subu 90.31
PRK10997487 yieM hypothetical protein; Provisional 87.96
PF06707205 DUF1194: Protein of unknown function (DUF1194); In 86.97
PF00362426 Integrin_beta: Integrin, beta chain; InterPro: IPR 83.79
KOG2353 1104 consensus L-type voltage-dependent Ca2+ channel, a 83.68
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 83.52
smart00187423 INB Integrin beta subunits (N-terminal portion of 81.57
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-184  Score=1590.15  Aligned_cols=730  Identities=37%  Similarity=0.685  Sum_probs=704.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCcccc----cCCCCceeccccccCCCHHHHhhcCCce
Q 001720          277 SIPGSIEPGIDLKSLPRPLDGD--------------VEPSSLAETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPL  338 (1021)
Q Consensus       277 ~~~~~~dp~~~~~~ip~p~~~~--------------~~pp~~~~~~~~----N~~P~yiR~T~~~iP~t~~l~~~~~lPl  338 (1021)
                      ..++|+||    ++||+|....              +.||++||+|.+    ||||||||||+|+||+|.++++.++|||
T Consensus       236 ~~~~rldp----~~iPs~~qv~~~d~~~~r~~~~~~~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPL  311 (1007)
T KOG1984|consen  236 PPPQRLDP----NAIPSPPQVSIEDDSSFRSTDTRAQPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPL  311 (1007)
T ss_pred             CccccCCh----hhCCCchhcccchhhhhhcCCccCCCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcc
Confidence            46789999    9999998662              579999999986    9999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCC---------------CccceEEccceeEecCCceEEEcCCCCCCCCCcccccccCcCcccCCCCC
Q 001720          339 GAVVCPLAEPPEGNL---------------FICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQ  403 (1021)
Q Consensus       339 g~vv~Pfa~~~~~e~---------------~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~l~~~g~R~D~~~  403 (1021)
                      |+||+|||.+.+.|.               +||||||||||+|+++||+|+||||+.+|++|++||+||+++|+|+|+++
T Consensus       312 alvIqPfa~l~p~E~~~~vVd~g~sgPvRC~RCkaYinPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~e  391 (1007)
T KOG1984|consen  312 ALVIQPFATLTPNEAPVPVVDLGESGPVRCNRCKAYINPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEE  391 (1007)
T ss_pred             eeEecccccCCcccCCCceecCCCCCCcchhhhhhhcCcceEEecCCceEEecCCCccccCChhhcccCCCccccccccc
Confidence            999999998876553               99999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccEEEeccccccCC--CCCCCeEEEEEecchhHHhhcHHHHHHHHHHHHHhcCC-CCCCceEEEEEEcCeEEEE
Q 001720          404 RPELTKGSVEFVAPTEYMVR--PPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELP-GFPRTQIGFITFDSTIHFY  480 (1021)
Q Consensus       404 rPEL~~gtvEfvap~eY~~r--~p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp-~~~rt~VgiITFds~Vhfy  480 (1021)
                      ||||++|+|||+|+++||++  +|+|++|||+||||++|+++|++.++|++|+++|+.|+ ++++++|||||||++||||
T Consensus       392 rpEL~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFf  471 (1007)
T KOG1984|consen  392 RPELCLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFF  471 (1007)
T ss_pred             CchhcccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEee
Confidence            99999999999999999998  89999999999999999999999999999999999999 6889999999999999999


Q ss_pred             ecCCCCCCcceeeccccccccCCCCCccceehhhhHHHHHHHHhhCCCcccCCCCcccchHHHHHHHHHHHHhc-CCEEE
Q 001720          481 NMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL-GGKLL  559 (1021)
Q Consensus       481 nl~~~~~~pqmlVvsDldd~f~Pl~~~lLv~l~esr~~I~~lLe~Lp~~~~~~~~~~~alG~AL~aA~~lL~~~-GGkIi  559 (1021)
                      |+++++++++|+||+|++|+|+|+.+++||+..|++..|+.|||+|+.||.+.+.+++|+|+||+||..+||.+ ||||+
T Consensus       472 nl~s~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~gGKl~  551 (1007)
T KOG1984|consen  472 NLSSNLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAADGGKLF  551 (1007)
T ss_pred             ccCccccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998 99999


Q ss_pred             EEecCCCCCCcc-cccccCCcCcccCCCccccCCCCCcHHHHHHHHHHhhCCcEEEEEEecCCCcChhhhhhhccccccE
Q 001720          560 IFQNSLPSLGVG-CLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQ  638 (1021)
Q Consensus       560 vF~sg~Pt~GpG-~L~~re~~~r~~gt~~e~~l~~pa~~fY~~La~~~~~~gIsVDlF~~s~~~~dlatl~~La~~TGG~  638 (1021)
                      ||++.+||+|.| +|+.|+| .|+++|+||++|+.+++++|++||++|++.|||||||++...|+|+|+|+.+++.|||+
T Consensus       552 vF~s~Lpt~g~g~kl~~r~D-~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~  630 (1007)
T KOG1984|consen  552 VFHSVLPTAGAGGKLSNRDD-RRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAYVDVATLGVVPALTGGQ  630 (1007)
T ss_pred             EEecccccccCcccccccch-hhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccceeeeeeecccccccCce
Confidence            999999999977 8877754 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCchhHHHHHHHHHHhcccccccceEEEEEeCCCeEEEeeecCcccCCCCceeeccCCCCCcEEEEEEecccc
Q 001720          639 VYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETL  718 (1021)
Q Consensus       639 v~~y~~F~~~~d~~kl~~dL~~~ltr~~g~~a~mrVR~S~Gl~V~~~~Gnf~~rs~~~~~l~~id~d~sia~~l~~d~~l  718 (1021)
                      +|+|.+|....|+.+|.+||.|++++++||+|+||||||+||++.+|||||+++++++++|+.+|+||+++|+|+|||+|
T Consensus       631 vy~Y~~F~a~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkL  710 (1007)
T KOG1984|consen  631 VYKYYPFQALTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKL  710 (1007)
T ss_pred             eEEecchhhcccHHHHHHHHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEEEEEEecCCcEEEEEEeecccccCCHHHHHHhcCHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001720          719 LTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKAL  798 (1021)
Q Consensus       719 ~~~~~~~iQ~AllYT~~~GeRrIRV~Tl~lpvt~~l~~vf~s~D~eai~~~laK~a~~~~l~~~l~d~R~~l~~~lv~iL  798 (1021)
                      +++..++||+|||||+.+|+|||||+|++++||++++|+||++|.|+++++|+|.|+..+.++.++++|+.++++|++||
T Consensus       711 q~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL  790 (1007)
T KOG1984|consen  711 QDGSDVHFQTALLYTTIDGQRRLRVLNLSLAVTSQLSELYRSADTDPLIAIMAKQAAKAILDKPLKEVREQLVSQCAQIL  790 (1007)
T ss_pred             cCCcceeEEEEEEEeccCCceeEEEEecchhhhhhHHHHHHhcCccHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccCCCCccccccccccHHHHHHHhhhccCCCCCCCCCCchHHHHHHHHHcCCCHHHHHhhhcccEEEeecC
Q 001720          799 KEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEH  878 (1021)
Q Consensus       799 ~~YRk~~~a~~~~~~qLiLPesLklLPlyi~~LlKS~~Lr~g~~~~s~DeR~~~~~~l~s~~v~~~~~~lYPrL~~lh~~  878 (1021)
                      ++||| +|++..+++||||||+||+||+|+++|+||.+|++  .+++.|+|+|++.++.++++++++.++||||+++|++
T Consensus       791 ~~YRk-~cas~~ssgQLILPeslKLlPly~la~lKs~~l~~--~~~~~DdRi~~~~~v~sl~v~~~~~~~YPrl~p~hdl  867 (1007)
T KOG1984|consen  791 ASYRK-NCASPASSGQLILPESLKLLPLYMLALLKSSALRP--QEIRTDDRIYQLQLVTSLSVEQLMPFFYPRLLPFHDL  867 (1007)
T ss_pred             HHHHH-hhcCCCCcccEechhhhHHHHHHHHHHHHhhcccc--cccccchhHHHHHHhhcccHHhhhhhhccceeeeecc
Confidence            99999 99999999999999999999999999999999996  7899999999999999999999999999999999999


Q ss_pred             CCCCCccCCcccccccccccchhhccCCcEEEEEcCceEEEEecCCCCHHHHHhhcCCchhhhh--hcccccccchHHHH
Q 001720          879 LLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAEL--SKVMLREQDNEMSR  956 (1021)
Q Consensus       879 ~~~~~~~~~~~~~lP~~l~LS~~~L~~~giyLLD~G~~i~lwvG~~v~~~ll~~lFgv~s~~~l--~~~~lp~~~n~~s~  956 (1021)
                      ..++.    ....+|.+|++|+|.|+++||||||||+++|||||+++++.|+|+||+|++.+++  ...+||++||.+|+
T Consensus       868 ~i~dt----l~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~  943 (1007)
T KOG1984|consen  868 DIEDT----LEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSR  943 (1007)
T ss_pred             ccccc----cccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHH
Confidence            64332    2236799999999999999999999999999999999999999999999999999  34789999999999


Q ss_pred             HHHHHHHHHHHhCCCCCceEEEeccCCCcchHHHHHhhccccCCCCCCCHHHHHHHHHHHHhcC
Q 001720          957 KLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQN 1020 (1021)
Q Consensus       957 ~l~~ii~~lr~~r~~~~~l~~vvrqg~~~~~e~~f~~~LVED~~~~~~SY~dFL~~lh~~I~~k 1020 (1021)
                      ++|++|..||+.|..++++ +++|+|++.. +.+|.++||||++++++||+||||.|||+|++|
T Consensus       944 k~r~~i~~i~~~r~~~l~v-~~~k~g~~~~-~~~~~~~lved~~~~~~sY~dyL~~~H~ki~~~ 1005 (1007)
T KOG1984|consen  944 KVRNVISLIRRQRSSELPV-VLVKQGLDGS-EVEFSEYLVEDRGRNISSYVDYLCELHKKIQQK 1005 (1007)
T ss_pred             HHHHHHHHHHhcccccccc-EEEecCCCch-hhhhhhhhhcccccCccccchHHHHHHHHHHhh
Confidence            9999999999999999998 9999998883 589999999999999999999999999999986

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>smart00262 GEL Gelsolin homology domain Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway Back     alignment and domain information
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information
>TIGR00627 tfb4 transcription factor tfb4 Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length Back     alignment and domain information
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] Back     alignment and domain information
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1021
2nup_B753 Crystal Structure Of The Human Sec23a24A HETERODIME 1e-146
3egd_B748 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-145
3eh1_A751 Crystal Structure Of The Human Copii-Coat Protein S 1e-140
3eh2_A766 Crystal Structure Of The Human Copii-Coat Protein S 1e-115
3efo_B770 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-111
1m2v_B926 Crystal Structure Of The Yeast Sec2324 HETERODIMER 8e-98
1pcx_A810 Crystal Structure Of The Copii Coat Subunit, Sec24, 4e-97
1m2o_A768 Crystal Structure Of The Sec23-Sar1 Complex Length 1e-08
2qtv_A772 Structure Of Sec23-Sar1 Complexed With The Active F 1e-08
2nup_A769 Crystal Structure Of The Human Sec23a24A HETERODIME 4e-07
3eg9_A764 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-06
3efo_A765 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-06
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 Back     alignment and structure 
Iteration: 1

 Score =  516 bits (1329), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/726 (38%), Positives = 438/726 (60%), Gaps = 31/726 (4%)
Query: 310  LNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFI---------CRTYV 360
            LNC+    R T ++IP +Q+L+++  LPLG ++ P  +  +  +           CRTY+
Sbjct: 39   LNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYI 98
Query: 361  NPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEY 420
            NP+V+F D  R+W+CN+C  +NDVP + F +   T    +  +RPE+   ++EF+AP+EY
Sbjct: 99   NPFVSFLDQ-RRWKCNLCYRVNDVPEE-FLYNPLTRVYGEPHRRPEVQNATIEFMAPSEY 156
Query: 421  MVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFY 480
            M+RPP PP+Y F+ DVS +A+ +G L  V Q++   LD LPG  RT+IGFITFDSTIHFY
Sbjct: 157  MLRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFY 216
Query: 481  NMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAF 540
             ++ SL+QPQM+++SD++D+F+P+P++LLVNL+ES+ +V  LL +LP MF   +  +SA 
Sbjct: 217  GLQESLSQPQMLIVSDIEDVFIPMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSAL 276
Query: 541  GPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGD-DLRVYGTDKEHSLRIPEDPFY 599
            GPAL+AAF +MS  GG++ +FQ  LP+LGVG LK R + + R    D   +   P   FY
Sbjct: 277  GPALQAAFKLMSPTGGRMSVFQTQLPTLGVGALKPREEPNHRSSAKDIHMT---PSTDFY 333
Query: 600  KQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSF---QSTTHGERLRH 656
            K++A D +  Q+AV+++  S +Y+D+ASLG +++Y+ G VYYYPS+    +    ++L+ 
Sbjct: 334  KKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQK 393
Query: 657  ELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMXXXXXX 716
            EL R LTR+  +EAVMRIRC KG+    +HGNF +RSTDLL+LP V+ D  YA+      
Sbjct: 394  ELQRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEE 453
Query: 717  XXXXXXXVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIE 776
                   V FQ ALLYT+S GERRIRVHTL  PVVS L+D++  AD  AI  + + +A++
Sbjct: 454  SLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVD 513
Query: 777  KTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTP 836
            ++++  L DAR+A+   ++ +L  YR+      + G  ++ P SL+  PL+ LA+ K   
Sbjct: 514  RSMTASLSDARDALVNAVIDSLSAYRSSVLSNQQPG--LMVPFSLRLFPLFVLALLKQKS 571
Query: 837  IRGGYADVTLDERCAAGYTMMALPVXXXXXXXYPCLIRVDEHLLKPSAQLDEYKNIMKRL 896
             + G  +  LDER  A   +   P+       +P L RVD   L     L+     + + 
Sbjct: 572  FQTG-TNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDN--LSDEGALNISDRTIPQP 628
Query: 897  PLV---AESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVM--LREQD 951
            P++    E L   G ++ D G   +LW G+  + +    +LG +  A + + M  L E D
Sbjct: 629  PILQLSVEKLSRDGAFLMDAGSVLMLWVGKNCTQNFLSQVLGVQNYASIPQPMTDLPELD 688
Query: 952  NEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSNGYADWIM 1011
               S +++  +  LREQ P ++ +  ++R     +  F  L N++ED+   +  Y ++++
Sbjct: 689  TPESARIIAFISWLREQRP-FFPILYVIRDESPMKANF--LQNMIEDRTESALSYYEFLL 745
Query: 1012 QIHRQV 1017
             I +QV
Sbjct: 746  HIQQQV 751
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 Back     alignment and structure
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 Back     alignment and structure
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 Back     alignment and structure
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 Back     alignment and structure
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 Back     alignment and structure
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 Back     alignment and structure
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 Back     alignment and structure
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 Back     alignment and structure
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 Back     alignment and structure
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 Back     alignment and structure
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1021
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 0.0
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-06
3efo_B770 SEC24 related gene family, member D; copii, coat p 0.0
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 0.0
3eh1_A751 Protein transport protein SEC24B; copii coat prote 0.0
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 0.0
2nut_A769 Protein transport protein SEC23A; human copii SEC2 1e-136
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 1e-129
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 2e-10
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 8e-10
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-06
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 7e-10
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 3e-07
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-06
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 1e-07
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 2e-07
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 2e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 8e-05
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 3e-06
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 1e-04
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 6e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 7e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 6e-04
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
 Score =  658 bits (1698), Expect = 0.0
 Identities = 251/971 (25%), Positives = 425/971 (43%), Gaps = 98/971 (10%)

Query: 97   TSGPFQRFPTPQFPPVAQAPPVRGPPVGLPPVSHPIGQVPNPPVPLRAQPPPVPMGSPVQ 156
            +    + +P  Q      A P++ P   +PP      Q P        Q    P G+   
Sbjct: 2    SHHKKRVYPQAQLQYGQNATPLQQPAQFMPP------QDPAAAGMSYGQMGMPPQGAV-- 53

Query: 157  RANFAPSGVNVPQPLSDSSFSASRPNSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPT 216
                                       P      F  P  +Q            + Q  T
Sbjct: 54   ---------------------------PSMGQQQFLTPAQEQL--------HQQIDQATT 78

Query: 217  MPSSFPSHPRSYVPPPPTSASSFPAHQGGYVPPGVQSQHS---GPPVGVIQGLAEDFSSL 273
              +    H    V P        P   G  +    Q   +   G P   +       + L
Sbjct: 79   SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138

Query: 274  SFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSR 333
                +   + P I   +LP P         L  +   N    Y+R T +A+P + SL+ +
Sbjct: 139  YPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKK 198

Query: 334  WHLPLGAVVCPLAEPPEGNLFI-------------CRTYVNPYVTFTDAGRKWRCNICAL 380
              LP G V+ P     +                  CR+Y+NP+VTF + GR+WRCN C L
Sbjct: 199  SKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRL 258

Query: 381  LNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISA 440
             NDVP           +      R E+    +E++AP EY +R P P  Y FLIDVS S+
Sbjct: 259  ANDVPMQMDQSDPNDPK--SRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSS 316

Query: 441  IRSGMLEVVAQTIKSCLDELPGF-PRTQIGFITFDSTIHFYNMK-------SSLTQPQMM 492
            I+SG+L     T+   LD +P    RT+I  +  D+ IH++ +         S  Q  MM
Sbjct: 317  IKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMM 376

Query: 493  VISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMS 552
             I+DL++ F+P P+ ++V+L   R  ++TLL  +P +FQ N+    A GPALK+A+ ++ 
Sbjct: 377  DIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIG 436

Query: 553  RLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIA 612
             +GGK+++   +LP+LG+G L+ R +   V  + +   L   +D FYK    D +K QI 
Sbjct: 437  GVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQIT 496

Query: 613  VNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTH--GERLRHELSRDLTRETAWEA 670
            V+++  S+ Y D+ASL  L+++T GQ ++YP F         +   E ++ ++ +   E 
Sbjct: 497  VDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMET 556

Query: 671  VMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVAL 730
            VMR R   G+R + ++G+F  RS+DL A   +  D++Y  +++++E+ +     Y QVA+
Sbjct: 557  VMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDES-IMADYCYVQVAV 615

Query: 731  LYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAV 790
            L + +  +RRIR+ TLA P   +L+++Y  AD  AI S ++  A+EK L+  L+DAR  +
Sbjct: 616  LLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLI 675

Query: 791  QLRLVKALKEYRNLYAVQHRLGSRM-IYPESLKFLPLYCLAICKSTPIRGGYADVTLDER 849
               +   L  Y+    V +  G        +L+  PL   ++ K    R G   V  D R
Sbjct: 676  NKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFRSG--IVPSDHR 733

Query: 850  CAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMK-------RLPLVAES 902
             +A   + +LP+K L+K +YP +  + +   +    +                +   +  
Sbjct: 734  ASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSL 793

Query: 903  LDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLR---EQDNEMSRKLL 959
             +  GLY+ D+G    LW G    P +  ++ G++   ++          +++E ++++ 
Sbjct: 794  FERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVR 853

Query: 960  GILKKLREQDPS-YYQLCQLVRQGEQPREGF------------LLLANLVEDQIGGSNGY 1006
             I+ +LR  D    YQ   +VR                        + LVED+I  +  Y
Sbjct: 854  NIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESY 913

Query: 1007 ADWIMQIHRQV 1017
             +++  +  ++
Sbjct: 914  REFLQIMKARI 924
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1021
d1pd0a3252 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar 3e-85
d2qtva3271 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar 4e-61
d1pd0a2177 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast 2e-36
d1pd0a2177 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast 6e-12
d1pd0a585 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha 3e-28
d1pd0a1107 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar 3e-26
d1pd0a4173 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha 8e-24
d2qtva575 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar 1e-18
d1j72a2116 d.109.1.1 (A:125-240) Macrophage capping protein C 0.001
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  272 bits (698), Expect = 3e-85
 Identities = 86/251 (34%), Positives = 144/251 (57%), Gaps = 10/251 (3%)

Query: 425 PMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGF-PRTQIGFITFDSTIHFYNM- 482
           P P  Y FLIDVS S+I+SG+L     T+   LD +P    RT+I  +  D+ IH++ + 
Sbjct: 1   PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 60

Query: 483 ------KSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNV 536
                 + S  Q  MM I+DL++ F+P P+ ++V+L   R  ++TLL  +P +FQ N+  
Sbjct: 61  LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 120

Query: 537 ESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPED 596
             A GPALK+A+ ++  +GGK+++   +LP+LG+G L+ R +   V  + +   L   +D
Sbjct: 121 NFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQD 180

Query: 597 PFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTH--GERL 654
            FYK    D +K QI V+++  S+ Y D+ASL  L+++T GQ ++YP F         + 
Sbjct: 181 SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 240

Query: 655 RHELSRDLTRE 665
             E ++ ++ +
Sbjct: 241 STEFAKHISMD 251
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173 Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 Back     information, alignment and structure
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1021
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a4173 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.95
d1pd0a1107 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.87
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.78
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.54
d2qtva1103 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.28
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.22
d2qtva4142 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.09
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 98.96
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 98.22
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 98.09
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 98.08
d2fh1a3113 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 98.03
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 97.88
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 97.83
d1svya_102 Severin, domain 2 {Dictyostelium discoideum [TaxId 97.83
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 97.76
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 97.71
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 97.63
d1j72a2116 Macrophage capping protein Cap G {Human (Homo sapi 97.59
d1kcqa_104 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 97.4
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 97.25
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 97.24
d2fh1a296 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 97.21
d1d0na3121 Gelsolin {Horse (Equus caballus) [TaxId: 9796]} 97.12
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 97.08
d1j72a3107 Macrophage capping protein Cap G {Human (Homo sapi 96.99
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 96.98
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 96.55
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 93.4
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=405.83  Aligned_cols=242  Identities=35%  Similarity=0.661  Sum_probs=226.9

Q ss_pred             CCCCEEEEEEECCHHHHHHCHHHHHHHHHHHHHHCCCC-CCCCEEEEEEECCEEEEEECCCC-------CCCCCEEECCC
Q ss_conf             99976999996526688623799999999999740999-99843999997675999826999-------99761431145
Q 001720          425 PMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSS-------LTQPQMMVISD  496 (1021)
Q Consensus       425 p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VgiITFds~Vhfynl~~~-------~~~pqmlVvsD  496 (1021)
                      |+||+|+||||+|+.++++|++++++++|+++|+.|++ +++++|||||||++||||+++..       .++++|++++|
T Consensus         1 P~Pp~~vFvID~s~~a~~~g~l~~~~~si~~~l~~l~~~~~~~~VgiItf~~~V~~y~l~~~~~~~~~~~~~~~~~~~~d   80 (252)
T d1pd0a3           1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD   80 (252)
T ss_dssp             CCCCBEEEEEECSHHHHHHTHHHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEEEECCCGGGC-------CEEECCCC
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf             99988999998987886663999999999999985737899828999997998899976677655454556652111233


Q ss_pred             CCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             32235788996523026669999999952897435888766546999999999998129889999427999885332136
Q 001720          497 LDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLR  576 (1021)
Q Consensus       497 ldd~f~P~p~~llv~l~esr~~I~~lLe~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~s~~Pt~GpG~L~~r  576 (1021)
                      |+|+|+|.+++|+++++|+++.|+++|++|++++.+++.+++|+|+||++|..+|+..||||++|++|+||.|+|+|+.|
T Consensus        81 l~~~~~p~~~~~lv~~~e~~~~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~gGkI~~f~sg~pt~GpG~l~~r  160 (252)
T d1pd0a3          81 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRR  160 (252)
T ss_dssp             TTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC-
T ss_pred             HHHCCCCCCCCCEEEHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             44305788763044589999999999985702114688875327999999999986379789999467997788601326


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCC--HHHHHH
Q ss_conf             886754589756667888807899999998517918999972389768121442113454089991999875--257799
Q 001720          577 GDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQST--THGERL  654 (1021)
Q Consensus       577 ~~~~r~~gt~ke~~l~~p~~~fYk~LA~~~~~~gIsVDlFl~s~~~~Diatl~~L~~~TGG~i~~Y~~F~~~--~d~~kl  654 (1021)
                      ++......+++++.++.++++||++||.+|++++|+||+|+++.+++|+++|+.|++.|||+++||++|+..  +|..||
T Consensus       161 ~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~~~~y~~f~~~~~~d~~k~  240 (252)
T d1pd0a3         161 NESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF  240 (252)
T ss_dssp             -------------------CCHHHHHHHHHTTTTEEEEEEEEESBCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHH
T ss_pred             CCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf             55222367642011036068999999999987897899996256556808886576507826999589776467789999


Q ss_pred             HHHHHHHCCCCC
Q ss_conf             999998302444
Q 001720          655 RHELSRDLTRET  666 (1021)
Q Consensus       655 ~~dL~r~ltr~~  666 (1021)
                      .+||.|+|+|++
T Consensus       241 ~~dl~~~l~~~~  252 (252)
T d1pd0a3         241 STEFAKHISMDF  252 (252)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHCCCCC
T ss_conf             999997526779
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure