Citrus Sinensis ID: 001770

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010-----
MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNISEPRNSCESSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRRTLSRKAMQQQVPASARHSMPKSQKHSRQGQSNPSSHFVGPESFSDLRPENNGFTDHTSNGILRWGANKNMSPVMESYAESPSMEFSDVTSSDWSLFTSSDEASFTTESARDSFSTIDYADGSNGDPFCSIYGPESASPRTVCCRTFSSSKPQTRFVSEKGYVLDSYLSTQSLNRAWQGENLRQVIDSSTELSSDSNCGSFVNYGSNQMYTLDRTSGHCNLRSWDS
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHccccccccccHHHcccccccccccccccccccHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEEEEEcccccccccccccEEEEEcccccccHHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccEEcccccccccccccccccccccEEEEEEEEEEccccccccccEEEEEEcccccEEEEccccEEEcccccccccccEEEEEEEccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccEEEccccc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEcccHHHHHHHHHccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccEEcccHHHHHHHccccccccccccHHHccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccEHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHccccccccHHHHcccHHHHHHcccEEEEEEEEEccccccccccccEEEEEccccHHHHHHHHHHHccHHHccccccccHHHHHHcccccEEEEEEccccEEEEEEEEEcccccccEEEEcccccHccccccEccccccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEccccEEEccHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEccccEEEcccccccccccccccccccccccccccccccccccEEEEEcccccccEEEcccccccccccc
mlepreadvPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRveavpsvsvsplvptsinefhvstsknefnvptlknefpastskngfqlcarcfapattrcsrcksvrycsgkcqiiHWRQVHKQECQQlektsssspslagsvddsvNESLNLQLSgynnkqggmgeappdgvihpsmsrcasssmdcstlensqtsmmerTVDKRVYRKSKKDLLRRDVATMFDSHDEIlrsctsdpissnnfsskeapirhksrtgasavsseesqrnlnlnssdgcaygqgttgsttydsngyrsrhwniseprnscesssssnsakygtytreneldftsNGKKFLNESIELNgycemkamnpmgtkncksaksctkvvgdqsclekerkgpiadeskaarvrdtipaqgsnvVSKMGIMKMMGlrkstklrqdsseLWHDQHRKLKMLFPYEEFLKLFQYEVIDllsprgllncgnscyaNAVLQCLTCTKPLVIYLLRrshssaccgkdwclMCELEQHVMMLResagplspgrilsHMRSiscqigdgsqEDAHEFLRLLVASMQSIClerhggeskvdprlqeTTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALtqftspedldgenmykcarcATYVRARKQLSIHEAPNILTIVLKRFqegrygkinkcitfpemldmmpfmtgtgdtpplYMLYSVVVHLdtqnasfsGHYVSYIKDMqgtwfriddtqvhpvpmsqvmseGAYMLFYmrscprprrtlSRKAmqqqvpasarhsmpksqkhsrqgqsnpsshfvgpesfsdlrpenngftdhtsngilrwganknmspvmesyaespsmefsdvtssdwslftssdeasfttesardsfstidyadgsngdpfcsiygpesasprtvccrtfssskpqtrfvsekgyvlDSYLSTQSLNRAWQGENLRQVIDsstelssdsncgsfvnygsnqmytldrtsghcnlrswds
mlepreadvpVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLensqtsmmertvdkrvyrkskkdllrrdvatmfdshdeilrsctsdpissnnfsskeapirhksrtgasavsseesqrnlnlnssdgcaygqgttgsttydsnGYRSRHWNiseprnscesssssnsaKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTkvvgdqsclekerkgpiadeskaarvrdtipaqgsnvvskmGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERhggeskvdprLQETTFiqhtfggrlwskVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFtspedldgenMYKCARCATYVRARKqlsiheapniLTIVlkrfqegrygkINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRRTLSRKAMQQQVpasarhsmpksqkhsrqgqsnpssHFVGPESFSDLRPENNGFTDHTSNGILRWGANKNMSPVMESYAESPSMEFSDVTSSDWSLFTSSDEASFTTESARDSFSTIDYADGSNGDPFCSIYGPESASPRTVCCRTfssskpqtrfvsekGYVLDSYLSTQSLNRAWQGENLRQVIDSstelssdsnCGSFVNYGsnqmytldrtsghcnlrswds
MLEPREADvpvlflvlvvlplvayvllGKWSEAAKKRERISllaqlaaeealRVEAvpsvsvsplvptsINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNIseprnscesssssnsAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRRTLSRKAMQQQVPASARHSMPKSQKHSRQGQSNPSSHFVGPESFSDLRPENNGFTDHTSNGILRWGANKNMSPVMESYAESPSMEFSDVTSSDWSLFTSSDEASFTTESARDSFSTIDYADGSNGDPFCSIYGPESASPRTVCCRTFSSSKPQTRFVSEKGYVLDSYLSTQSLNRAWQGENLRQVIDSSTELSSDSNCGSFVNYGSNQMYTLDRTSGHCNLRSWDS
********VPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHV********V************KNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHK**********************************************************************************************************************************************************************************************************************KFLNESIELNGYCEMK******************************************************************************LWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRE********RILSHMRSISCQIGD***EDAHEFLRLLVASMQSICLERHGGE*KVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSC*****************************************************************ILRW*************************************************************PFCSIYG******RTVCCRTF*******RFVSEKGYVLDSYLSTQSLNRAWQGENLRQV************CGSFVNYGSNQMYTLD*************
****READVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHV*************************QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHK************************************************************************************************************************************************************************************************************************************************************************************************************************************EFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQS*******************TFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYM*****************************************************************************************************************************************************************************************************************************************
********VPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQ********************DSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMS***************QTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSN******************************LNSSDGCAYGQGTTGSTTYDSNGYRSRHWNIS****************YGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPR**************************************VGPESFSDLRPENNGFTDHTSNGILRWGANKNMSPVME****************DWSLF*************RDSFSTIDYADGSNGDPFCSIYGPESASPRTVCCRTFSSSKPQTRFVSEKGYVLDSYLSTQSLNRAWQGENLRQVID*********NCGSFVNYGSNQMYTLDRTSGHCNLRSWDS
*****EADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSIN**H***********************NGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQ******************************************************************************************************************************************************************************************************************KFLNESIELNGYCEMKAMN******************************************************************************DQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCP*********************************************************************************************************************************PFCSIYGPESASPRTVCCRTFSSSKPQTRFVSEKGYVLDSYLSTQSLNRAWQGENLRQVIDSSTELSSDSNCGSFVNYGSNQMYTLDRTSGHCNL*****
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNISEPRNSCESSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRRTLSRKAMQQQVPASARHSMPKSQKHSRQGQSNPSSHFVGPESFSDLRPENNGFTDHTSNGILRWGANKNMSPVMESYAESPSMEFSDVTSSDWSLFTSSDEASFTTESARDSFSTIDYADGSNGDPFCSIYGPESASPRTVCCRTFSSSKPQTRFVSEKGYVLDSYLSTQSLNRAWQGENLRQVIDSSTELSSDSNCGSFVNYGSNQMYTLDRTSGHCNLRSWDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1015 2.2.26 [Sep-21-2011]
Q9FPS9924 Ubiquitin carboxyl-termin yes no 0.818 0.899 0.516 0.0
Q9SJA1672 Ubiquitin carboxyl-termin no no 0.408 0.617 0.453 1e-107
Q67XW5631 Ubiquitin carboxyl-termin no no 0.339 0.546 0.517 1e-106
Q9FKP5731 Ubiquitin carboxyl-termin no no 0.352 0.489 0.506 1e-98
Q9SB511008 Ubiquitin carboxyl-termin no no 0.497 0.500 0.370 2e-96
D3ZU96 1325 Ubiquitin carboxyl-termin yes no 0.315 0.241 0.421 9e-71
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.315 0.241 0.421 2e-70
B2RQC2 1324 Ubiquitin carboxyl-termin yes no 0.315 0.241 0.421 2e-70
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.456 0.347 0.333 9e-68
C9JVI0530 Ubiquitin carboxyl-termin no no 0.289 0.554 0.386 3e-62
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2 Back     alignment and function desciption
 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/986 (51%), Positives = 613/986 (62%), Gaps = 155/986 (15%)

Query: 1   MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSV 60
           MLEPR AD+P+LFLVLVVLP+VAY+LLGKWS  ++KR R +LLAQ+AAEEALR E V + 
Sbjct: 1   MLEPRGADIPILFLVLVVLPVVAYILLGKWSNISEKRVRANLLAQMAAEEALRAETVVNA 60

Query: 61  ---------------------SVSPLVPTSINEFH------VSTSKNEFNVPTLKNEFPA 93
                                +VS        EF       V+  +++    T      A
Sbjct: 61  DRGVRFESVATENRAQRTRTKTVSAGGGAVRAEFDAGARETVAEQRSDSVTATCGVTVVA 120

Query: 94  STSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSL 153
             + N   +CARCF PA TRCSRCKSVRYCSGKCQIIHWR  HK EC  +E  SSSS  +
Sbjct: 121 PVNNNELHVCARCFGPAKTRCSRCKSVRYCSGKCQIIHWRVAHKDECVPVESCSSSSERV 180

Query: 154 AGSVDDSV-NESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSM 212
           +   D  + +  ++  +   N  Q   G+     V   S+     S  D +   N+Q   
Sbjct: 181 SFEKDSVLYDHGMDSTMYSNNTTQAAKGKTSKSSVDFASL---GISQNDITPQINTQG-- 235

Query: 213 MERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTG 272
             ++V K+   K+ ++  RRD AT+FDS DE          +S    +K + I+HKSR  
Sbjct: 236 -RKSVGKQHSSKANRESCRRDSATVFDSSDEA---------ASAGGDNKTSHIKHKSR-- 283

Query: 273 ASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNISEPRNSCESSSSSNS 332
            ++ ++E + R  +++SS     GQ                               S  S
Sbjct: 284 GNSYAAETNPRRHSVDSSAVQMNGQ-------------------------------SFVS 312

Query: 333 AKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSC 392
               ++  EN L   S+              C        GT+     ++     G+QSC
Sbjct: 313 GMQESHKHENNLGVRSSFG------------CPNTQYPSNGTRTATLPRTGINKSGEQSC 360

Query: 393 LEKERKGPIADESKAARVRDT-IPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQH 451
            E  +KG +A  SK  R +DT I  + + + S MGIMKMMGLR STK          D++
Sbjct: 361 TETSKKGQVAAVSKTVRSKDTGISEESNGISSTMGIMKMMGLRNSTK--------HDDRY 412

Query: 452 RKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSH 511
           + LKMLFPYEEFLK FQ EV DL SPRGL+NCGNSCYANAVLQ LTCTKPLV YLLRRSH
Sbjct: 413 KNLKMLFPYEEFLKFFQCEVFDL-SPRGLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSH 471

Query: 512 SSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLL 571
           S +C GKDWCLMCELEQHVMMLRES GPLS  RILSHMRSI+CQIGDGSQEDAHEFLRLL
Sbjct: 472 SRSCSGKDWCLMCELEQHVMMLRESGGPLSASRILSHMRSINCQIGDGSQEDAHEFLRLL 531

Query: 572 VASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTL 631
           VASMQSICLER GGE+KVDPRLQETT +QH FGGRL SKVKCLRC HESERYENIMDLTL
Sbjct: 532 VASMQSICLERLGGETKVDPRLQETTLVQHMFGGRLRSKVKCLRCDHESERYENIMDLTL 591

Query: 632 EIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ 691
           EIYGWVESL+DALTQFT PEDLDGENMY+C+RCA YVRARK+LSIHEAPNILTIVLKRFQ
Sbjct: 592 EIYGWVESLQDALTQFTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQ 651

Query: 692 EGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM 751
           EGRYGKINKCI+FPEMLDM+PFMT TGD PPLYMLY+V+VHLDT NASFSGHY+SY+KD+
Sbjct: 652 EGRYGKINKCISFPEMLDMIPFMTRTGDVPPLYMLYAVIVHLDTLNASFSGHYISYVKDL 711

Query: 752 QGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRRTLSRKAMQQQVPASARHSMPK 811
           +G W+RIDD+++HPVPM+QVMSEGAYMLFYMRS PRP+R       +    A   HS P+
Sbjct: 712 RGNWYRIDDSEIHPVPMTQVMSEGAYMLFYMRSYPRPQRG------EHNGKAPVHHSQPR 765

Query: 812 SQKHSRQGQSNPSSHFVGPESFSDLRPENNGFTDHTSNGILRWGANKNMSPVMESYAESP 871
           ++    + Q  P + F         +P      DH           KN            
Sbjct: 766 NEM---KEQRKPVNRF---------KPR----ADH-----------KN------------ 786

Query: 872 SMEFSDVTSSDWSLFTSSDEASFTTESARDSFSTIDYAD----GSNGDPFC---SIYGPE 924
               ++ +SS+WSLFTSSDEASFTTES RDSFSTIDY D      +  PF    ++Y   
Sbjct: 787 ----TESSSSEWSLFTSSDEASFTTESTRDSFSTIDYTDVCHVVDSSSPFAIFNNVYHNV 842

Query: 925 SASPR-TVCCRTFSSSKPQTRFVSEK 949
             SP  TV CR FS +KP+TR+  E+
Sbjct: 843 EPSPHNTVACRMFSGTKPETRYFVEQ 868
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2 Back     alignment and function description
>sp|Q67XW5|UBP18_ARATH Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKP5|UBP17_ARATH Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1 Back     alignment and function description
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1 Back     alignment and function description
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|C9JVI0|U17LB_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 11 OS=Homo sapiens GN=USP17L11 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1015
147832982945 hypothetical protein VITISV_035043 [Viti 0.913 0.980 0.563 0.0
296086860894 unnamed protein product [Vitis vinifera] 0.846 0.960 0.575 0.0
356556906989 PREDICTED: ubiquitin carboxyl-terminal h 0.944 0.969 0.551 0.0
356546765990 PREDICTED: ubiquitin carboxyl-terminal h 0.941 0.965 0.546 0.0
357451869983 Ubiquitin carboxyl-terminal hydrolase [M 0.901 0.930 0.538 0.0
297850108926 ubiquitin-specific protease 15 [Arabidop 0.817 0.896 0.515 0.0
18394440924 ubiquitin carboxyl-terminal hydrolase 15 0.818 0.899 0.516 0.0
359494410906 PREDICTED: ubiquitin carboxyl-terminal h 0.586 0.656 0.708 0.0
334182643928 ubiquitin carboxyl-terminal hydrolase 15 0.818 0.895 0.514 0.0
11993475924 ubiquitin-specific protease 15 [Arabidop 0.818 0.899 0.514 0.0
>gi|147832982|emb|CAN68406.1| hypothetical protein VITISV_035043 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/1028 (56%), Positives = 691/1028 (67%), Gaps = 101/1028 (9%)

Query: 1    MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSV 60
            MLEPREAD+P LFL L+V PLV Y+LLGKWSE  KK++R+SLLAQLAAEEA + EA+ + 
Sbjct: 1    MLEPREADIPALFLFLIVFPLVTYILLGKWSEVTKKKKRVSLLAQLAAEEAFKAEAMATA 60

Query: 61   SVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSV 120
            SV PLV                           S+SK+G   CARCF PATTRCSRCKSV
Sbjct: 61   SVMPLV---------------------------SSSKSGNHECARCFGPATTRCSRCKSV 93

Query: 121  RYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSV------NESLNLQLSGYNN 174
            RYCSGKCQIIHWRQVHK+ECQQLE  SS +   A ++++SV      N+S+N Q  G   
Sbjct: 94   RYCSGKCQIIHWRQVHKEECQQLETHSSITSLKAAAIEESVHERVSVNDSMNSQFYGSGI 153

Query: 175  KQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMER-TVDKRVYRKSKKDLLRRD 233
            KQ  + +A  + +I+PS S    ++  CS+++ S+ +MMER T DK V RKS +++L+++
Sbjct: 154  KQTVLEKASGN-IINPSFSTGVPATNACSSIDTSRITMMERRTGDKWVSRKSSREILKKE 212

Query: 234  VATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGC 293
               +  S +E+  S  +   SS++ S KEA  R K     S VS EE  +  N ++    
Sbjct: 213  DVAICGSTEEVSTSSNTSITSSDDISLKEAYTRQKLGNCDSVVSEEEMYKKYNFSAPT-- 270

Query: 294  AYGQGTTGSTTYDSNGYRSRHWNISEPRNSCESSSSSNSAKYGTYTRENELDFTSNGKKF 353
            A+ +G T S+ ++ +  ++++ N+ EPR++    SSS S K GT   E E D  S G   
Sbjct: 271  AFARGHTSSSMHERHKLQNQNGNVFEPRSN-YGISSSCSEKNGTNGCEIERDHISCGGNL 329

Query: 354  LNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDT 413
              E I  N        +  G  NC    +  K                   S+A R+ D+
Sbjct: 330  HREGITAN--------DETGEPNCSPGITSIK------------------RSEATRMSDS 363

Query: 414  IP--AQGSNVVSKMGIMKMMGLRKSTKL-RQDSSELWHDQHRKLKMLFPYEEFLKLFQYE 470
             P  A G+N V+ MG MKMMGLRK  K  +QD+SE   D H+K+KMLFPYEEF++ FQ E
Sbjct: 364  TPILAPGNNEVTSMGFMKMMGLRKPLKPPKQDASEESSDIHKKIKMLFPYEEFVRFFQCE 423

Query: 471  VIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHV 530
            V ++ SPRGLLNCGN C  + +L         VI +L        C  +WCLMCELE+HV
Sbjct: 424  VFNI-SPRGLLNCGNRCLRDYLL--------FVICMLG-------CVTNWCLMCELEKHV 467

Query: 531  MMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVD 590
            MMLRES GPLSP RILSHMRSI+CQIGDGSQEDAHEFLRLLV SMQSICLE+ GGE +VD
Sbjct: 468  MMLRESGGPLSPSRILSHMRSINCQIGDGSQEDAHEFLRLLVTSMQSICLEKLGGEREVD 527

Query: 591  PRLQETTFIQHTFGGRLWSK---VKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQF 647
             RLQETTFIQHTFGGRL SK   VKCLRC  ESERYENIMDLTLEI+GWVESLEDALTQF
Sbjct: 528  ARLQETTFIQHTFGGRLRSKCNQVKCLRCHLESERYENIMDLTLEIFGWVESLEDALTQF 587

Query: 648  TSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEM 707
            T+PEDLDGENMY+C RC TYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFP+M
Sbjct: 588  TTPEDLDGENMYRCRRCTTYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPDM 647

Query: 708  LDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVP 767
            LDM+PFMTGT D PPLYMLY+VVVH+DT NASFSGHYV+Y+KD+QG WFR+DD +V PV 
Sbjct: 648  LDMIPFMTGTYDVPPLYMLYAVVVHMDTLNASFSGHYVAYVKDLQGNWFRVDDAEVQPVS 707

Query: 768  MSQVMSEGAYMLFYMRSCPRPRRTLSRKAMQQQVPASARHSMPKSQKHSRQGQSNPSSHF 827
             +QVMSEGAY+LFYMRS PRP R    KA+QQQ PASA+H   K+ K SR   S P   F
Sbjct: 708  TNQVMSEGAYILFYMRSWPRPPRAFPVKAIQQQAPASAKHCSSKTHKSSR---SKPRGDF 764

Query: 828  VGPESFSDLRPENNGFTDHTSNGILRWGANKNMSPVMESYAESPSMEFSDVTSSDWSLFT 887
            VG E  +  R    GF+  TSNGILR G N +      +Y E  S EFSD  SSDWSLFT
Sbjct: 765  VGLEPSNPKREVAPGFSSATSNGILRNGRNGS-----RTYVEPISQEFSDAPSSDWSLFT 819

Query: 888  SSDEASFTTESARDSFSTIDYADGSNGDPFCSI----YGPESASPRTVCCRTFSSSKPQT 943
            SSDEASFTTES RDSFST+DYA+  N DP  SI    Y PE AS   V CR  S+ K +T
Sbjct: 820  SSDEASFTTESTRDSFSTVDYAETCNVDPISSIFNTSYMPEYASGNAVSCRMLSNGKLET 879

Query: 944  RFVSE-KGYVLDSYLSTQSLNRAWQGENLRQVIDSSTELSSDSNCGSFVNYGSNQMYTLD 1002
            R+V E KGYVLDSYL TQ  ++AW+GENL+QV   STE  SD NCG  V YGSN   T  
Sbjct: 880  RYVQEKKGYVLDSYLPTQP-DKAWKGENLKQV-SVSTEFPSDCNCGMSVKYGSNPKDTFV 937

Query: 1003 RTSGHCNL 1010
            RTSG C L
Sbjct: 938  RTSGCCKL 945

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086860|emb|CBI33027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556906|ref|XP_003546761.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356546765|ref|XP_003541793.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|357451869|ref|XP_003596211.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355485259|gb|AES66462.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297850108|ref|XP_002892935.1| ubiquitin-specific protease 15 [Arabidopsis lyrata subsp. lyrata] gi|297338777|gb|EFH69194.1| ubiquitin-specific protease 15 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18394440|ref|NP_564014.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] gi|166201354|sp|Q9FPS9.2|UBP15_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15; AltName: Full=Deubiquitinating enzyme 15; Short=AtUBP15; AltName: Full=Ubiquitin thioesterase 15; AltName: Full=Ubiquitin-specific-processing protease 15 gi|332191421|gb|AEE29542.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359494410|ref|XP_002266179.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|334182643|ref|NP_001185019.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] gi|332191422|gb|AEE29543.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11993475|gb|AAG42756.1|AF302665_1 ubiquitin-specific protease 15 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1015
TAIR|locus:2046678672 UBP19 "AT2G24640" [Arabidopsis 0.411 0.622 0.454 1e-111
TAIR|locus:21219591008 UBP16 "ubiquitin-specific prot 0.483 0.487 0.390 2.4e-110
TAIR|locus:2124809631 UBP18 "AT4G31670" [Arabidopsis 0.469 0.755 0.430 3.1e-108
TAIR|locus:2168282731 UBP17 "AT5G65450" [Arabidopsis 0.386 0.536 0.481 3.9e-108
MGI|MGI:1924050 1324 Usp42 "ubiquitin specific pept 0.403 0.309 0.374 7.3e-65
RGD|1305231 1325 Usp42 "ubiquitin specific pept 0.357 0.273 0.393 2.2e-64
UNIPROTKB|E1B9W9 1333 USP42 "Ubiquitin carboxyl-term 0.367 0.279 0.390 3.1e-63
UNIPROTKB|Q9H9J4 1324 USP42 "Ubiquitin carboxyl-term 0.411 0.315 0.369 4.2e-63
UNIPROTKB|E2RHU7 1331 USP42 "Ubiquitin carboxyl-term 0.407 0.311 0.368 5.9e-63
ZFIN|ZDB-GENE-030131-5739 1047 usp42 "ubiquitin specific pept 0.446 0.432 0.334 9.5e-62
TAIR|locus:2046678 UBP19 "AT2G24640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 988 (352.9 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
 Identities = 193/425 (45%), Positives = 267/425 (62%)

Query:   377 CKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKS 436
             CKS + C+      +C   + K     + K  R  D+ P +  ++  +  +       K 
Sbjct:    78 CKSVRYCSA-----ACQTSDWKSGHKLKCKGFRSTDSSPVRRDDIDFEASLFGNRSASKK 132

Query:   437 TKLRQDSSELWHDQHRK-LKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQC 495
             T++     +       K   +LFPYE F++ + ++   +++P GL NCGNSC+AN VLQC
Sbjct:   133 TRIALVPQQSQSKATLKPTDVLFPYESFVRYYNWDR-PIMAPCGLTNCGNSCFANVVLQC 191

Query:   496 LTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQ 555
             L+ T+PLV YLL R H   C   DWC +CE E H+     S  P SP  I+S + +I   
Sbjct:   192 LSWTRPLVAYLLERGHKRECRRNDWCFLCEFENHLDRANYSRFPFSPMNIISRLPNIGGN 251

Query:   556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLR 615
             +G G QEDAHE +R  +  MQS+CL+  GGE  V PR QETT IQ+ FGG L S+V+C  
Sbjct:   252 LGYGRQEDAHELMRFAIDMMQSVCLDEFGGEKVVPPRAQETTLIQYIFGGLLQSQVQCTA 311

Query:   616 CSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLS 675
             CS+ S++YEN+MDLT+EI+G   SLE+ L QFT+ E L G+N+YKC RC  YV+A K+LS
Sbjct:   312 CSNVSDQYENMMDLTVEIHGDAVSLEECLDQFTAKEWLQGDNLYKCDRCDDYVKACKRLS 371

Query:   676 IHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDT 735
             I  APNILTI LKRFQ GR+GK+NK I+FPE  D+ P+M+G G+   +Y LY+V+VHLD 
Sbjct:   372 IRCAPNILTIALKRFQGGRFGKLNKRISFPETFDLGPYMSGGGEGSDVYKLYAVIVHLDM 431

Query:   736 QNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRRTLSRK 795
              NASF GHY+ Y+KD +G W+RIDD++V  V +  V+S+ AYML Y R  PRP    S +
Sbjct:   432 LNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQRAYMLLYSRVQPRPSNLRSEE 491

Query:   796 AMQQQ 800
             +  ++
Sbjct:   492 SQDEK 496
GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2121959 UBP16 "ubiquitin-specific protease 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124809 UBP18 "AT4G31670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168282 UBP17 "AT5G65450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1924050 Usp42 "ubiquitin specific peptidase 42" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305231 Usp42 "ubiquitin specific peptidase 42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9W9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9J4 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHU7 USP42 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5739 usp42 "ubiquitin specific peptidase 42" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPS9UBP15_ARATH3, ., 4, ., 1, 9, ., 1, 20.51620.81870.8993yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.963
3rd Layer3.4.19.120.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1015
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-160
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 9e-64
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 3e-62
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 1e-58
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 9e-52
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 2e-51
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 8e-50
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 4e-37
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 3e-34
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 2e-32
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 1e-30
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 2e-26
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 5e-25
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 4e-24
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 4e-22
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 2e-21
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 7e-18
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 3e-16
pfam0175339 pfam01753, zf-MYND, MYND finger 3e-11
COG5207749 COG5207, UBP14, Isopeptidase T [Posttranslational 2e-07
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 4e-07
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 4e-06
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 3e-04
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 6e-04
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  473 bits (1219), Expect = e-160
 Identities = 161/307 (52%), Positives = 200/307 (65%), Gaps = 4/307 (1%)

Query: 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES 536
             GL N GN+C+ N+VLQCLT T PL  YLL R HS  CC + +C+MC LE HV     S
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS 60

Query: 537 AGPLS-PGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQE 595
           +GP S P    S+++ IS     G QEDAHEFLR L+ +MQ  CL+R      VDP  QE
Sbjct: 61  SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQE 120

Query: 596 TTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDG 655
           TT +Q  FGG L S+VKCL C H S  Y+  +DL+L+I G  +SLEDAL QFT PE LDG
Sbjct: 121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA-DSLEDALEQFTKPEQLDG 179

Query: 656 ENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMT 715
           EN YKC RC   V+A KQL+IH APN+LTI LKRF   R GKINK I+FPE LD+ P+M+
Sbjct: 180 ENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239

Query: 716 GTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEG 775
              D P  Y LY+V+VH        SGHY  Y+K   G W+ +DD++V PV +  V+S+ 
Sbjct: 240 QPNDGPLKYKLYAVLVHSGFSP--HSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQK 297

Query: 776 AYMLFYM 782
           AY+LFY+
Sbjct: 298 AYILFYI 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1015
KOG1865545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.97
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.94
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.94
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.84
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 99.76
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.71
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.64
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 98.34
KOG3556724 consensus Familial cylindromatosis protein [Genera 96.64
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 96.27
KOG2061362 consensus Uncharacterized MYND Zn-finger protein [ 96.11
KOG3612588 consensus PHD Zn-finger protein [General function 95.76
PF08715320 Viral_protease: Papain like viral protease; InterP 92.18
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 91.68
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 91.56
PLN03158396 methionine aminopeptidase; Provisional 89.45
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 85.47
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 80.47
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-72  Score=634.62  Aligned_cols=324  Identities=49%  Similarity=0.888  Sum_probs=307.8

Q ss_pred             cCcEeeecchhhhhhhcccccCCcCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHH
Q 001770          452 RKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVM  531 (1015)
Q Consensus       452 ~~~~~~~~~E~~~~l~~~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~  531 (1015)
                      .+.+.+|++|.+.  +.++.+. ..+.||.|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.++.
T Consensus        86 ~p~k~Lfp~e~~~--~~~~~~~-~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~  162 (545)
T KOG1865|consen   86 PPAKVLFPYEKLP--LSSDRPA-AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHIT  162 (545)
T ss_pred             Ccchhccccceec--ccccccc-cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHH
Confidence            3458999999987  4444544 678999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHcCC-CCCChHHHHHHHHhcccccCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEE
Q 001770          532 MLRESA-GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSK  610 (1015)
Q Consensus       532 ~L~ss~-~~isP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~d~~~~~~siI~~lF~G~l~s~  610 (1015)
                      ...... .+|+|..|+..|+.+..+|..|+|+||||||+++||.|+..|+   ++....++..+++++|+++|+|.++++
T Consensus       163 ~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL---~g~~~~~~~sq~ttlv~~iFGG~LrS~  239 (545)
T KOG1865|consen  163 RALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL---PGHKQVDPRSQDTTLVHQIFGGYLRSQ  239 (545)
T ss_pred             HHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc---CCCccCCcccccceehhhhhccchhhc
Confidence            766555 4999999999999999999999999999999999999999987   567788999999999999999999999


Q ss_pred             EEecCCCCcccceeeeeeeeeecccccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceEEEEEEee
Q 001770          611 VKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRF  690 (1015)
Q Consensus       611 ikC~~Cg~~s~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~slP~iLiIqLkRF  690 (1015)
                      |+|..|.+++.++|+.++|+|+|. +..+|++||++|++.|.|+|+|+|.|++|+++++|.|+++|.++|+||+||||||
T Consensus       240 vkC~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF  318 (545)
T KOG1865|consen  240 IKCLHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRF  318 (545)
T ss_pred             eecccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehh
Confidence            999999999999999999999999 6899999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccceEeCCCcCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCceeeeCccc
Q 001770          691 QEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQ  770 (1015)
Q Consensus       691 ~~g~~~Ki~~~V~fPe~LDLs~y~~~~~~~~~~YeL~gVVvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt~vs~ee  770 (1015)
                      +.+..+||++.|.||+.|||.|||.++.+.+..|.|||||+|.|.  +.++|||+||||..+|+||+|||+.|+.++++.
T Consensus       319 ~~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~--~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~  396 (545)
T KOG1865|consen  319 SNGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGT--SCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIES  396 (545)
T ss_pred             ccCcccccccccCCcccccccccccCCCCCCceEEEEEEEEeccc--cccCCceEEEEEcCCCceEEccCceeeeccccc
Confidence            999999999999999999999999988889999999999999998  799999999999999999999999999999999


Q ss_pred             ccCCCcEEEEEEEc
Q 001770          771 VMSEGAYMLFYMRS  784 (1015)
Q Consensus       771 Vls~~AYILfYeR~  784 (1015)
                      |++++||||||.|.
T Consensus       397 VLsq~AYmLfY~R~  410 (545)
T KOG1865|consen  397 VLSQQAYILFYARK  410 (545)
T ss_pred             eecccceEEEEEee
Confidence            99999999999998

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG3612 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1015
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 1e-29
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 7e-29
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 7e-29
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 5e-28
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 1e-27
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 1e-27
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 7e-24
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 8e-24
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 1e-23
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 1e-22
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 4e-22
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 5e-22
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 2e-21
2f1z_A522 Crystal Structure Of Hausp Length = 522 5e-17
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 3e-16
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 2e-15
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 4e-08
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 35/333 (10%)
Query: 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK--DWCLMCELEQHVMML--- 533
           GL+N GN+C+ +++LQCL      + + + + HS+ C  +  D C  C L++ V  L   
Sbjct: 143 GLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202
Query: 534 ----RESAGPLSPGRILSHMRSISC------QIGDGSQEDAHEFLRLLVASM-QSICLER 582
               + S+   S  R    +  ++C       +   SQ+DAHEF + ++  + QS  L+ 
Sbjct: 203 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDL 262
Query: 583 HGGESKVDPRLQETTFIQHT-FGGRLWSKVKCLRCSHESER-YENIMDLTLEIYGWVESL 640
              +       ++   I HT F G L S + C  C + S+   +  +DL+L+I    + L
Sbjct: 263 PNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD-KKKL 321
Query: 641 EDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE---GRYGK 697
            + L  F   E L   N Y C  C +   A KQL IH+ P++L + LKRF+    G   K
Sbjct: 322 YECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRK 380
Query: 698 INKCITFPEMLDMMPFMTG--------TGDTPPL-YMLYSVVVHLDTQNASFSGHYVSYI 748
           ++  I FP  L+M  + +          G  P + Y L  +V H  T N    GHY+++ 
Sbjct: 381 LDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVN---EGHYIAFC 437
Query: 749 KDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFY 781
           K   G WF+ +D+ V  +   +V+ E AY+LFY
Sbjct: 438 KISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1015
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-107
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-106
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 3e-94
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2e-92
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 1e-86
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 6e-86
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 1e-80
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 4e-71
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 3e-27
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 7e-27
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-10
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 9e-15
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 2e-14
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 2e-14
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 4e-14
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 3e-05
3qww_A433 SET and MYND domain-containing protein 2; methyltr 6e-05
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
 Score =  336 bits (863), Expect = e-107
 Identities = 95/342 (27%), Positives = 150/342 (43%), Gaps = 34/342 (9%)

Query: 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACC---GKDWCLMCELEQHV--MM 532
            GL N GN+C+ N++LQCL+ T+ L  Y L+R +             L+ E  + +  + 
Sbjct: 10  AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 69

Query: 533 LRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICL------------ 580
                  +SP    + ++  + +    +Q+DA EFLR L+  + +               
Sbjct: 70  TSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 129

Query: 581 ------ERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI- 633
                 +  G +       +E + I   F G+L S + C  C + S  ++   DL+L I 
Sbjct: 130 LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIA 189

Query: 634 --YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ 691
                  +L D +  FT  + LDG+    C RC    R  K+ SI   P IL + LKRF 
Sbjct: 190 KRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFS 249

Query: 692 --EGRYGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYI 748
               R  K+   + FP   LD+  F +   +   +Y LY+V  H  T   +  GHY +Y 
Sbjct: 250 ESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGT---TMGGHYTAYC 305

Query: 749 KDM-QGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPR 789
           +    G W   +D+ V P+  SQV +  AY+LFY  + P  R
Sbjct: 306 RSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPSR 347
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1015
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 9e-54
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 2e-50
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 4e-41
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-37
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-29
d2dj8a147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 3e-12
d2jw6a138 g.85.1.1 (A:503-540) Zinc finger MYND domain-conta 4e-12
d2dana147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 6e-12
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  189 bits (480), Expect = 9e-54
 Identities = 85/335 (25%), Positives = 134/335 (40%), Gaps = 32/335 (9%)

Query: 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMM 532
            GL N GN+CY N++LQCL     L  Y  R  +          G    +  E    +  
Sbjct: 16  TGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKA 75

Query: 533 LRES-AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP 591
           L       +SP      +  I+ Q    SQ+D+ E L  L+  +     +    +   + 
Sbjct: 76  LWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEE 135

Query: 592 RLQ------------------ETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633
                                  + I   F G+  S V+CL C  +S  +E  M L+L +
Sbjct: 136 NNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPL 195

Query: 634 YG-WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ- 691
                 +L+D L  F+  E L   N + C+ C     + K++ I + P +L + LKRF  
Sbjct: 196 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 255

Query: 692 --EGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK 749
               +           E LD+  ++ G  +    Y L+SV  H    +    GHY +Y K
Sbjct: 256 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLD---GGHYTAYCK 312

Query: 750 D-MQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783
           +  +  WF+ DD +V  + +S V S  AY+LFY  
Sbjct: 313 NAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1015
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 98.86
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 98.83
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 98.72
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=436.15  Aligned_cols=292  Identities=26%  Similarity=0.431  Sum_probs=253.1

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf             68855313899622589999995489899999952347656898505999999999999708999893899999984012
Q 001770          475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC  554 (1015)
Q Consensus       475 ~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~isP~~ll~~L~~~~~  554 (1015)
                      +|++||.|+||||||||+||+|+++|+|+++++......  .....++.++|+++|..|+....++.|..++..+.  ..
T Consensus         4 ~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~~~~~~~~~~~~~~--~~   79 (347)
T d1nbfa_           4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WE   79 (347)
T ss_dssp             SSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT--CCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHTT--CC
T ss_pred             CCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC--HH
T ss_conf             997298639965699999999984799999997077668--86412699999999999865799757199997623--00


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEECC
Q ss_conf             36999867599999999999999997412999887976444530102345388779996678984310000134554023
Q 001770          555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY  634 (1015)
Q Consensus       555 ~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~e~s~I~~lF~G~l~~~ikC~~Cg~~S~~~E~f~~LsL~I~  634 (1015)
                      .|..+.||||+||+.+||+.|+.++...           ...++|.++|.|.+...++|..|+..+.+.|+|+.|+|+++
T Consensus        80 ~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~  148 (347)
T d1nbfa_          80 TLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK  148 (347)
T ss_dssp             GGGGGSCBCHHHHHHHHHHHHHHHHTTS-----------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECT
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCCCCCCCEECEEEEEEEEECCCCCEEEEECCCCCCCCCCC
T ss_conf             0206778779999999999888887503-----------33456550113478986780786614223223223310112


Q ss_pred             CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEC----CCCCCCCCEEECCCCCCC
Q ss_conf             6635589999731799768898742246555321000333330269538999983102----422325406867876787
Q 001770          635 GWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE----GRYGKINKCITFPEMLDM  710 (1015)
Q Consensus       635 ~~~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K~~~I~slP~iLiIqLkRF~~----~~~~Ki~~~V~FP~~LDL  710 (1015)
                      . ..++.++|..++..|.+++++++.|..| ....+.|+..|.++|+||+|||+||.+    +...|++..|.||..|||
T Consensus       149 ~-~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl  226 (347)
T d1nbfa_         149 G-KKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL  226 (347)
T ss_dssp             T-CCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEEC
T ss_pred             C-CCCHHHHHHHHCCHHEECCCCCCCCCCC-CCEECCEEEEEEECCCHHEEEEEEEEECCCCCCCCCCCCEEEEEEEECC
T ss_conf             3-3310356776412022414310024567-6301217899982698004751001342235731015724764544134


Q ss_pred             CCCCCCCC-CCCCCEEEEEEEEEECCCCCCCCCCEEEEEECC-CCCEEEEECCCEEEECCCCCCCC--------------
Q ss_conf             77547899-999832599999997379999997099999979-99699980991124186645679--------------
Q 001770          711 MPFMTGTG-DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMSE--------------  774 (1015)
Q Consensus       711 s~yl~~~~-~~~~~YeL~AVIvH~G~~~S~~sGHYvayVK~~-dgkW~~FNDs~Vt~vs~eeV~s~--------------  774 (1015)
                      .+|+.... .....|+|+|||+|.|..   ++|||+||+|.. +++||+|||+.|+++++++|+..              
T Consensus       227 ~~~~~~~~~~~~~~Y~L~~vI~H~G~~---~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~  303 (347)
T d1nbfa_         227 DEFLQKTDPKDPANYILHAVLVHSGDN---HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHC  303 (347)
T ss_dssp             GGGBSSCCTTSCCEEEEEEEEEEEEET---TEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTT
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEECCCC---CCCEEEEEEECCCCCEEEEEECCCEEECCHHHHHHHHCCCCCCCCCCCCC
T ss_conf             653233334576440567999845878---79989980613899989999899608988999987515887655455778


Q ss_pred             -CCEEEEEEECCC
Q ss_conf             -738999998399
Q 001770          775 -GAYMLFYMRSCP  786 (1015)
Q Consensus       775 -~AYILfY~R~s~  786 (1015)
                       .||||||+|.+.
T Consensus       304 ~~aYiLfY~r~~~  316 (347)
T d1nbfa_         304 TNAYMLVYIRESK  316 (347)
T ss_dssp             EEEEEEEEEEGGG
T ss_pred             CCEEEEEEEECCC
T ss_conf             9779999996372
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure