Citrus Sinensis ID: 001792

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010--
MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFPVNLKSSSSKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN
cccccccccccccccccccccHHHHHHccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHcccccEEcHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEEEccccccEEEEEccEEEEEEccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccc
ccccccccccccccccccccHHHHHHHHccccccccccccccEEEccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHccHccccHHHHccccccHHHHcHHHHccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHHHHHHHcccccccccccccccccccccccEEEcccEEEEccccHHHHHHHHHcccccHHHHHHHHHHHcccccEEcHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHEHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHHHccccHHHHHcccccccccccccHHHHHHHccccccHHEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHEEEEEEEEEEEcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccEEEcccccccEEEEEEEEEEEEEcccccccHHHHHHccccccEEcccHHHHHHHHHHHHHcccEEEEEEccccccHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccHHHHcccccccc
masaasisqiqypptcststtTATRKALNIFntkrddgsskILHFLhscsssssssssfpvnlksssskptrlrprplqdsIQSNFMEniensvdfhiptceqEQNFHQRVEntetcadlviprsenstnhqlmcleprrrifvqdppwfssiFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRlapnlphikglflgwfgplSEAIEREQKMQRTKKQKaayaphiellpaDKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKneetkpwgrdtQAKLGSRLVELLIETAYvqhpvnpadysppdvrpaFRHRFKTILkhpgqkttkrygvvecdplvlegldrsakhmlipyvpmlvppkkwkgynkggylflpsyvmrthgsrkQQEALKSVTGNCMKKVFEALDTlgstkwrvNKQVLSVLESIWVsggniaglvdrndvlipekplsedmtEVQKWKWSVRKAKKINqerhsqrcDTELKLSVARRMkdeegfyyphnldfrgraypmhphlnhlssDVCRGVlefaegrplgksGLRWLKIHLANLFsggveklshdgrlaFVENHLYEIfdsaenpingsrwwltaedpFQCLAACINLSealksssphsvishlpihqdgscngLQHYAALGRNTVEAAAVNLvagekpadVYSEIAVRVHEIMkrdsnkdpskhpQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIasenqpvrwttplglpvvqpycknerHLIRTSLQVLALQREGNLVEIRKqrtafppnfvhsldgshMMMTAVACRDaglhfagvhdsfwthacdvdeMNQILRKKFVELYNMPMLENLLESFqtsyptlsfpplpergnfdleevlespyffn
masaasisqiqypptcststttaTRKALNIFNTKRDDGSSKILHFLHSCsssssssssfpvnlksssskptrlrprpLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMkkrkfnllrrrqvkqeteawerMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKaayaphiellpADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIhsflektknykrkkiiadteevlskekellrkrvnslikskrvMEAQKllkneetkpwgrdtQAKLGSRLVELLIETAYvqhpvnpadysppDVRPAFRHRFKTIlkhpgqkttkrygvvECDPLVLEGLDRSAKHMLIpyvpmlvppkkwkgyNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEAldtlgstkwrVNKQVLSVLESIWVSGGNIAGLVDRNDVLIpekplsedmtevqkwkWSVRKakkinqerhsqrcdtelklSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEImkrdsnkdpskhPQALLAKILIDQVDRKLVKQTVmtsvygvtfvgareQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEnqpvrwttplgLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN
MASAASISQIQYPPtcststttatRKALNIFNTKRDDGSSKILHFLHscsssssssssfpvnlkssssKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN
*****************************IF***********LHF***********************************************SVDFHIPTCEQEQNFHQRVENTETCADLVIPR****TNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE****************AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV*****************************************AKLGSRLVELLIETAYVQHPVNPADYS**DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG******ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPL***MTEVQKWKWSVR***************************DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL*******VISHLPIHQDGSCNGLQHYAALGRNTVEA***************************************ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRK*********************AVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSF**********************
****************************NIFNTKRDDGSSKILHF****************************************************************************I*R***S************************IFLK**********************RRRQVKQETEAWERMV*********************IKGLFLGWFGPLSEA******************PHIELLPADKVAVIVMHKMMG**********VQVVQAAVHIGMAIEQEIRIHSFL**********IIAD**E**********KRVNSLIKSKR**********EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP*****PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR********VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP************KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA***************AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN
*********************TATRKALNIFNTKRDDGSSKILHFLH****************************RPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER************AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT************VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA********VISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMK**********PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN
*********IQYPPTCSTSTTTATRKALNIFNTKRDDGSSKIL**************SFPVNLKSSSSKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFPVNLKSSSSKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRxxxxxxxxxxxxxxxxxxxxxxxxMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1012 2.2.26 [Sep-21-2011]
O24600993 DNA-directed RNA polymera yes no 0.904 0.921 0.740 0.0
P69242977 DNA-directed RNA polymera N/A no 0.899 0.931 0.707 0.0
P69243977 DNA-directed RNA polymera N/A no 0.899 0.931 0.707 0.0
Q8L6J1977 DNA-directed RNA polymera N/A no 0.865 0.896 0.736 0.0
Q8L6J31021 DNA-directed RNA polymera N/A no 0.831 0.823 0.672 0.0
Q8VWF81020 DNA-directed RNA polymera N/A no 0.831 0.824 0.666 0.0
Q8L6J51002 DNA-directed RNA polymera N/A no 0.824 0.832 0.666 0.0
Q93Y941002 DNA-directed RNA polymera N/A no 0.824 0.832 0.664 0.0
Q9LFV61011 DNA-directed RNA polymera no no 0.839 0.840 0.645 0.0
P92969976 DNA-directed RNA polymera no no 0.832 0.862 0.623 0.0
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1 Back     alignment and function desciption
 Score = 1437 bits (3720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/928 (74%), Positives = 793/928 (85%), Gaps = 13/928 (1%)

Query: 90   IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
            I NSV FH    E  +N       T   A L I   EN        L  RRR+F+QDPPW
Sbjct: 74   ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130

Query: 150  FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
             S++FLKGL K +      E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131  ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190

Query: 207  KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
            K LAPNLP++K +FLGWF PL + IEREQK+Q+  +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191  KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250

Query: 265  HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
            HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T    RK    D++E L K
Sbjct: 251  HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305

Query: 325  EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
            EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+ 
Sbjct: 306  EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365

Query: 385  PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
             +  S P+ RPAFRHRFKT+ K+PG K  +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366  QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425

Query: 445  VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
            VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++     +VFEALDTLG+TKWRVN
Sbjct: 426  VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485

Query: 505  KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
            + +L V+E +W  GGNIAGLV+R DV IPEKP SED  E+Q WKWS RKA KIN+ERHS 
Sbjct: 486  RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545

Query: 565  RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
            RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546  RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605

Query: 625  KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
            KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606  KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665

Query: 685  CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPA 744
            CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666  CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725

Query: 745  DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
            DVYSEI+ RVHEIMK+DS+KDP  +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726  DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785

Query: 805  EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
            EQIKRRLEEKG ITD+R LFAAACY+AKVTL ALGEIFEAAR+IM WLGDCAK+IAS+N 
Sbjct: 786  EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845

Query: 865  PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGS 924
            PVRW TPLGLPVVQPYC++ERHLIRTSLQVLALQREGN V++RKQRTAFPPNFVHSLDG+
Sbjct: 846  PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905

Query: 925  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTS 984
            HMMMTAVACR+AGL+FAGVHDS+WTHACDVD MN+ILR+KFVELYN P+LE+LL+SFQ S
Sbjct: 906  HMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQES 965

Query: 985  YPTLSFPPLPERGNFDLEEVLESPYFFN 1012
            YP L FPP+P+RG+FDL+EVL+S YFFN
Sbjct: 966  YPNLVFPPVPKRGDFDLKEVLKSQYFFN 993
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1 Back     alignment and function description
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1 Back     alignment and function description
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2 Back     alignment and function description
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2 Back     alignment and function description
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2 Back     alignment and function description
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2 Back     alignment and function description
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1 Back     alignment and function description
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1012
224143911882 predicted protein [Populus trichocarpa] 0.864 0.992 0.795 0.0
224088334982 predicted protein [Populus trichocarpa] 0.962 0.991 0.721 0.0
225445794979 PREDICTED: DNA-directed RNA polymerase 3 0.872 0.901 0.788 0.0
449506262975 PREDICTED: DNA-directed RNA polymerase 3 0.936 0.972 0.724 0.0
449454095975 PREDICTED: DNA-directed RNA polymerase 3 0.936 0.972 0.723 0.0
297825331990 PDE319/SCA3 [Arabidopsis lyrata subsp. l 0.904 0.924 0.739 0.0
15224093993 DNA-directed RNA polymerase 3 [Arabidops 0.904 0.921 0.740 0.0
297743676808 unnamed protein product [Vitis vinifera] 0.798 1.0 0.818 0.0
62750825989 DNA-dependent RNA polymerase [Spinacia o 0.858 0.878 0.738 0.0
59800202977 RecName: Full=DNA-directed RNA polymeras 0.899 0.931 0.707 0.0
>gi|224143911|ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1513 bits (3916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/880 (79%), Positives = 804/880 (91%), Gaps = 5/880 (0%)

Query: 137  EPRRRIFVQDPPWFSSIFLKGLYK----RIKLQEYREMKKRKFNLLRRRQVKQETEAWER 192
            E  +++F+QDPPW S+ F KG+YK    ++K+ E+++++KRK+NLLRRRQ+++ETEAWER
Sbjct: 4    ESSKKVFIQDPPWISAHFWKGMYKLANKKVKV-EFKDIEKRKYNLLRRRQIREETEAWER 62

Query: 193  MVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIE 252
            M DEY+ L  +M E++LAPNLP++KGL LGWF PL EAIE+EQKM+++KKQK+A++P+IE
Sbjct: 63   MADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIE 122

Query: 253  LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 312
            LLPADK+AVIVMHKMMGL+M GHED CV+VVQAAV IGMAIEQE+RIH+FLEKTKNY+RK
Sbjct: 123  LLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRK 182

Query: 313  KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVEL 372
            K + + +E + KEKE+LRKRVNSLI+ KR+ME Q L+K +ETKPW R TQAKLGSRL+EL
Sbjct: 183  KTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIEL 242

Query: 373  LIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
            L ETAYVQ PVN ++  PPDVRPAFRH FKT+ K+PGQK  K+YGV+ECDPL+L GLD +
Sbjct: 243  LTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGT 302

Query: 433  AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 492
            AKHMLIPY PMLVPPKKWKGY+KGG+LFLPSYVMRTHGSR+QQ A++SV G  M+KVFEA
Sbjct: 303  AKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEA 362

Query: 493  LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
            LDTLG+TKWRVN+++L V+E IW SGGNIAGLVDR D+ IPEKP S+D+TE+QKWKWSVR
Sbjct: 363  LDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVR 422

Query: 553  KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
            KAKKINQERHSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CR
Sbjct: 423  KAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCR 482

Query: 613  GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
            GVLEF EGRPLGKSGLRWLKIHLANL+SGGVEKLSHDGRLAFVENHL EIFDSA+NP+NG
Sbjct: 483  GVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNG 542

Query: 673  SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEA 732
             RWWL AEDPFQCLAACINLSEAL S+SPH+VISHLPIHQDGSCNGLQHYAALGR+T+EA
Sbjct: 543  KRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEA 602

Query: 733  AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
            AAVNLVA EKP+DVYSEIAVRVHEI++RDSNKDP+ +P ALLAKIL+DQVDRKLVKQTVM
Sbjct: 603  AAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVM 662

Query: 793  TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
            TSVYGVT+VGAREQIKRRLEEKGHITDDR LF+AACY AKVTLTALGE+F+AAR IM WL
Sbjct: 663  TSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWL 722

Query: 853  GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTA 912
            GDCAK+IASE+QPV+WTTPLGLPVVQPY K ERHLI+TSLQ+LALQREG+ V++RKQRTA
Sbjct: 723  GDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTA 782

Query: 913  FPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMP 972
            FPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHA DVD MN+ILR+KFVELYNMP
Sbjct: 783  FPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMP 842

Query: 973  MLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1012
            +LENLLE FQTSYPTL FPPLPERGNFDL++VL SPYFFN
Sbjct: 843  ILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224088334|ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225445794|ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|449506262|ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449454095|ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297825331|ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata] gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15224093|ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana] gi|3914826|sp|O24600.1|RPOT3_ARATH RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; Flags: Precursor gi|2330560|emb|CAA69972.1| chloroplast single-subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] gi|2330564|emb|CAA69717.1| chloroplast single-subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] gi|4115372|gb|AAD03373.1| chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297743676|emb|CBI36559.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|62750825|emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea] Back     alignment and taxonomy information
>gi|59800202|sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName: Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3; Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName: Full=DNA-directed RNA polymerase 3A, chloroplastic; AltName: Full=NictaRpoT3-syl; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3A; Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type RNA polymerase [Nicotiana sylvestris] gi|21425679|emb|CAC95027.2| plastid RNA polymerase [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1012
TAIR|locus:2047515993 SCA3 "SCABRA 3" [Arabidopsis t 0.904 0.921 0.741 0.0
UNIPROTKB|P69242977 RPOT3 "DNA-directed RNA polyme 0.915 0.947 0.703 0.0
UNIPROTKB|Q8VWF81020 RPOT2 "DNA-directed RNA polyme 0.832 0.825 0.665 0.0
UNIPROTKB|Q93Y941002 RPOT1 "DNA-directed RNA polyme 0.824 0.832 0.664 3.59999944711e-318
DICTYBASE|DDB_G0267416950 rpmA "DNA-dependent RNA polyme 0.666 0.709 0.423 1.1e-148
ASPGD|ASPL0000068622 1391 AN7609 [Emericella nidulans (t 0.673 0.490 0.352 6.3e-142
POMBASE|SPAC26H5.121154 rpo41 "mitochondrial RNA polym 0.770 0.675 0.359 1.3e-137
SGD|S0000018581351 RPO41 "Mitochondrial RNA polym 0.639 0.478 0.409 3.1e-136
CGD|CAL00051261300 RPO41 [Candida albicans (taxid 0.796 0.62 0.348 4.5e-124
RGD|13045991205 Polrmt "polymerase (RNA) mitoc 0.636 0.534 0.395 1.9e-123
TAIR|locus:2047515 SCA3 "SCABRA 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3627 (1281.8 bits), Expect = 0., P = 0.
 Identities = 688/928 (74%), Positives = 794/928 (85%)

Query:    90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
             I NSV FH    E  +N       T   A L I   EN        L  RRR+F+QDPPW
Sbjct:    74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130

Query:   150 FSSIFLKGLYKRIK--LQ-EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
              S++FLKGL K +   L+ E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct:   131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190

Query:   207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQK--AAYAPHIELLPADKVAVIVM 264
             K LAPNLP++K +FLGWF PL + IEREQK+Q+ K +K  AAYAPHIELLPADK+AVIVM
Sbjct:   191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250

Query:   265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
             HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T    RK    D++E L K
Sbjct:   251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305

Query:   325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
             EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+ 
Sbjct:   306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365

Query:   385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
              +  S P+ RPAFRHRFKT+ K+PG K  +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct:   366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425

Query:   445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
             VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++     +VFEALDTLG+TKWRVN
Sbjct:   426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485

Query:   505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
             + +L V+E +W  GGNIAGLV+R DV IPEKP SED  E+Q WKWS RKA KIN+ERHS 
Sbjct:   486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545

Query:   565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
             RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct:   546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605

Query:   625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
             KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct:   606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665

Query:   685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPA 744
             CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct:   666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725

Query:   745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
             DVYSEI+ RVHEIMK+DS+KDP  +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct:   726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785

Query:   805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
             EQIKRRLEEKG ITD+R LFAAACY+AKVTL ALGEIFEAAR+IM WLGDCAK+IAS+N 
Sbjct:   786 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845

Query:   865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGS 924
             PVRW TPLGLPVVQPYC++ERHLIRTSLQVLALQREGN V++RKQRTAFPPNFVHSLDG+
Sbjct:   846 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905

Query:   925 HMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTS 984
             HMMMTAVACR+AGL+FAGVHDS+WTHACDVD MN+ILR+KFVELYN P+LE+LL+SFQ S
Sbjct:   906 HMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQES 965

Query:   985 YPTLSFPPLPERGNFDLEEVLESPYFFN 1012
             YP L FPP+P+RG+FDL+EVL+S YFFN
Sbjct:   966 YPNLVFPPVPKRGDFDLKEVLKSQYFFN 993
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA;ISS
GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0005739 "mitochondrion" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
UNIPROTKB|P69242 RPOT3 "DNA-directed RNA polymerase 3, chloroplastic" [Nicotiana sylvestris (taxid:4096)] Back     alignment and assigned GO terms
UNIPROTKB|Q8VWF8 RPOT2 "DNA-directed RNA polymerase 2, chloroplastic/mitochondrial" [Nicotiana sylvestris (taxid:4096)] Back     alignment and assigned GO terms
UNIPROTKB|Q93Y94 RPOT1 "DNA-directed RNA polymerase 1, mitochondrial" [Nicotiana sylvestris (taxid:4096)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267416 rpmA "DNA-dependent RNA polymerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000068622 AN7609 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC26H5.12 rpo41 "mitochondrial RNA polymerase Rpo41" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000001858 RPO41 "Mitochondrial RNA polymerase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0005126 RPO41 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
RGD|1304599 Polrmt "polymerase (RNA) mitochondrial (DNA directed)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93Y94RPOT1_NICSY2, ., 7, ., 7, ., 60.66420.82410.8323N/Ano
P69243RPO3A_TOBAC2, ., 7, ., 7, ., 60.70750.89920.9314N/Ano
P69242RPOT3_NICSY2, ., 7, ., 7, ., 60.70750.89920.9314N/Ano
Q8VWF8RPOT2_NICSY2, ., 7, ., 7, ., 60.66660.83100.8245N/Ano
O24600RPOT3_ARATH2, ., 7, ., 7, ., 60.74030.90410.9214yesno
Q8L6J5RPO1B_TOBAC2, ., 7, ., 7, ., 60.66660.82410.8323N/Ano
Q8L6J1RPO3B_TOBAC2, ., 7, ., 7, ., 60.73610.86560.8966N/Ano
Q8L6J3RPO2B_TOBAC2, ., 7, ., 7, ., 60.67250.83100.8237N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.976
4th Layer2.7.7.60.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1012
COG51081117 COG5108, RPO41, Mitochondrial DNA-directed RNA pol 0.0
pfam00940394 pfam00940, RNA_pol, DNA-dependent RNA polymerase 0.0
PHA00452807 PHA00452, PHA00452, T3/T7-like RNA polymerase 0.0
>gnl|CDD|227439 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase [Transcription] Back     alignment and domain information 
 Score =  619 bits (1597), Expect = 0.0
 Identities = 312/901 (34%), Positives = 449/901 (49%), Gaps = 105/901 (11%)

Query: 177  LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIERE-- 234
             L +  +    E W+  ++ +++   K  EK         +   L W+  +    + E  
Sbjct: 255  WLEKSAIALAEEMWKAGIERFEKRGEKNREKNA-------EASNLSWYRMIIHLHKEEIA 307

Query: 235  --------QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
                    +       ++  Y P+++L   DKVA + + ++  LV     DR +++   +
Sbjct: 308  GLLEALLAEASLGKAGKRLTYGPYLKLADLDKVAHLTIRELFDLVSMRRYDRGMRLTPLS 367

Query: 287  VHIGMAIEQEIRIHSFLEKTKN---YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
            + +G  +E E     F    K+     RKKI                      + +KR M
Sbjct: 368  IRLGAMVEDEFFSEQFKGHEKDAYEDARKKIPEQFHN---------------AVHNKRSM 412

Query: 344  EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPA-DYSPPDVRPAFRHRF 401
                  K  E + W +D +AK+GS  + LL+  A ++   ++ A + +      AFRH +
Sbjct: 413  TRHAKHKGAEWQDWPQDIKAKVGSVALCLLLSVAKIEVKLIDIATEQTLKGEFEAFRHSY 472

Query: 402  KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
            +    H G K          D L+ E  +     +    +PMLVPPK W  + +GGY + 
Sbjct: 473  QY---HNGTKIGVVATHETLDWLLTE--NSRLAPLSPQLLPMLVPPKPWTSWFRGGYWYG 527

Query: 462  PSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
               ++R   + +Q   L   + N  M KV+ +++ LG+T W +N +V  V+ S+W +G  
Sbjct: 528  RVRLLRLKKTGEQVRYLLMASENGDMDKVYHSINALGNTAWSINHRVFEVMASLWNNGET 587

Query: 521  IAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
               +   +D  +  P         E  +WK   +   + N    S+RCD   KL +AR  
Sbjct: 588  FLCIPQADDMWLAPPMPREDMSPEEFSRWKSERKTIAEANARAVSKRCDFNYKLEIARAF 647

Query: 579  KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
             DE+ FY+PH LDFRGRAYP+  HLNH  +D  RG+L+FA G+PLG  GL WLKIHLANL
Sbjct: 648  LDEK-FYFPHQLDFRGRAYPLSLHLNHQGNDASRGLLQFANGKPLGPEGLDWLKIHLANL 706

Query: 639  FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
            F  GV+K S + R+AFV  +  EI DSAENP++G+RWWLTA+ P+Q LA C    E +  
Sbjct: 707  F--GVDKCSMNERVAFVMANQQEILDSAENPLDGNRWWLTADKPWQALAFCFEWQEYVAE 764

Query: 699  SSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
                + ISHLP+ QDG+CNGLQHYAALG +   AA VNLV  +KP DVY+ +A  V   +
Sbjct: 765  GDHEAFISHLPVQQDGTCNGLQHYAALGGDEEGAAQVNLVPSDKPNDVYATVASVVIAKL 824

Query: 759  KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
            +  +            AK L D+  R +VK+TVMT+VYGVT+VGA  QI +RL     I 
Sbjct: 825  RDIAEAGDE------TAKELKDKETRTVVKETVMTNVYGVTYVGATRQITKRLT---LIY 875

Query: 819  DDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI----------------- 859
               +        Y  K    A   +F AA  I  WL DC   I                 
Sbjct: 876  GASKFDTVDPWKYLTKEVFPAERTLFAAAHFIQDWLWDCVGEIVVSAAGDMDWLQKKAGI 935

Query: 860  -ASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE--GNLVEIRKQRTAFPPN 916
             A E+ PV WTTPLGLP+VQPY  +E+  + T+LQ + +Q +     V+ RKQ +  PPN
Sbjct: 936  KADESLPVIWTTPLGLPIVQPYRTSEQKQLETNLQTVFIQLDVASKKVDKRKQGSGIPPN 995

Query: 917  FVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLEN 976
            F+HSLD +HM +T   C D G+ FA VHDS+WTHA D D MNQ LR++FV+L+    +  
Sbjct: 996  FIHSLDAAHMQLTVSRCHDQGIRFALVHDSYWTHAGDADAMNQFLREEFVKLHGDHDVLR 1055

Query: 977  LLESF--------------------------QTSYPTLSFPPLPERGNFDLEEVLESPYF 1010
            L   F                          + +Y  L  PPLPE+G+ DL +VLES YF
Sbjct: 1056 LKAEFGRRYKGFLVSKKAIKANDEDLTAKLGEGTYIPLELPPLPEKGSLDLSQVLESAYF 1115

Query: 1011 F 1011
            F
Sbjct: 1116 F 1116

Length = 1117
>gnl|CDD|216207 pfam00940, RNA_pol, DNA-dependent RNA polymerase Back     alignment and domain information
>gnl|CDD|222797 PHA00452, PHA00452, T3/T7-like RNA polymerase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1012
KOG10381088 consensus Mitochondrial/chloroplast DNA-directed R 100.0
PHA00452807 T3/T7-like RNA polymerase 100.0
COG51081117 RPO41 Mitochondrial DNA-directed RNA polymerase [T 100.0
PF00940405 RNA_pol: DNA-dependent RNA polymerase; InterPro: I 100.0
PF14700318 RPOL_N: DNA-directed RNA polymerase N-terminal; PD 100.0
smart00482206 POLAc DNA polymerase A domain. 90.77
COG51081117 RPO41 Mitochondrial DNA-directed RNA polymerase [T 88.45
cd08637377 DNA_pol_A_pol_I_C Polymerase I functions primarily 84.38
cd08638373 DNA_pol_A_theta DNA polymerase theta is a low-fide 83.4
PRK14975553 bifunctional 3'-5' exonuclease/DNA polymerase; Pro 81.74
>KOG1038 consensus Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation [Transcription; Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=7.8e-244  Score=2082.84  Aligned_cols=857  Identities=58%  Similarity=0.973  Sum_probs=797.8

Q ss_pred             cceeecCCCchhHHHhh-----hhhhhhh---HHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccc
Q 001792          140 RRIFVQDPPWFSSIFLK-----GLYKRIK---LQEYREMKKR-KFNLLRRRQVKQETEAWERMVDEYK-ELEAKMIEKRL  209 (1012)
Q Consensus       140 ~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~-~~~~l~eRQ~~lE~~~~~~a~~r~~-~~~~~~~~~g~  209 (1012)
                      ..-......|.++.+..     .....++   +.+.++.+.. +|-.+.+||..+|.++|++|+++|+ +...+|++..+
T Consensus       202 ~~~~~~~~m~ke~~~~~~~~~~~~~~~~~~~lk~v~k~~~~~~d~~~l~~Rq~~~e~~~~e~a~e~~k~el~~~~c~~~l  281 (1088)
T KOG1038|consen  202 EINELVTKMEKEGNSLNQISSKFLEESRDLPLKAVRKGFGDFKDFFNLDRRQVKLETEAWERAAEEWKIELESDMCEGSL  281 (1088)
T ss_pred             hHHHHHhHhhhhhhhhhHHHHHHHHHHhcccHHHHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhc
Confidence            44456677887777633     3333233   5677777766 8999999999999999999999999 77779999999


Q ss_pred             CCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhc--cCccchhhhhccCChhHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 001792          210 APNLPH-IKGLFLGWFGPLSEAIEREQKMQRTK--KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA  286 (1012)
Q Consensus       210 a~~~~~-~~~ll~~w~~~L~~~I~~e~~~~~~~--~~r~~y~p~L~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~a  286 (1012)
                      ++++|| +++++++||++|.++|++|++.++..  ++|..|+|||++||++++|+|||+++|+++++|++.+++++++++
T Consensus       282 ~~~lp~~lk~lf~~W~~~l~~ai~ee~n~~r~~~~~~r~~Y~p~L~lL~a~k~aviti~el~~ll~tg~~~~~~~v~~aa  361 (1088)
T KOG1038|consen  282 APNLPYNLKSLFLGWFKPLRDAIKEEINLLRALVRKGRLNYAPFLKLLDADKMAVITIHELMGLLMTGGETGGVRVVQAA  361 (1088)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHhcChhhHHHHHHHHHHhhhccCCCccchhHHHHH
Confidence            999999 99999999999999999999998875  889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCHHHHHHH
Q 001792          287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKL  365 (1012)
Q Consensus       287 ~~IG~aVe~E~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~kv  365 (1012)
                      .+||++||+|+|++.++++..+++.-.     ..-.-++....++.++.++++.++.+.+..... +...+|+..++++|
T Consensus       362 ~~~G~aveqe~ri~~~lq~~~k~~~~~-----~~~~~ke~~~~~~~v~~l~~~~k~~~~~~~~~~~~~~~pWp~~v~~kv  436 (1088)
T KOG1038|consen  362 KSLGRAVEQEFRIEQFLQRKTKNKAGD-----SYCELKELGKSRKEVRQLVQNLKLSQRLSGPESHLSEKPWPSAVQAKV  436 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccch-----HHHHHHHhhcccHHHHHHHHHHHHHHHhcccccccccCCccHHHHHHH
Confidence            999999999999999988654322211     111124556667778888877776666655555 56789999999999


Q ss_pred             HHHHHHHHHHHccccCCCCCCCCCCCCccCceeEeeeeeecCCCCCcceeEEEEecCHHHHHHHHhhhhcccCCCCceee
Q 001792          366 GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV  445 (1012)
Q Consensus       366 G~~Li~~L~e~~~i~~~~~~~~~~~~~~~paF~h~~~~~~~~~g~~~~k~~gvi~~~~~~~~~l~~~~~~~~~~~lPMlv  445 (1012)
                      |++|+++||++++|+++..++.++.++..|||.|+|++.   +|+..+++||+|+|||.+..+|++.+.++.++++||||
T Consensus       437 Gs~L~~lL~~~aki~~~~~~~~~~~~~~~paf~h~f~~~---n~~~~~~~~g~ie~~pll~r~leks~~~~~~~~vPMLv  513 (1088)
T KOG1038|consen  437 GSRLIELLMQVAKIQVPADQPDTKLPDERPAFVHTFQVT---NGQKGGRKYGVIECHPLLSRGLEKSALHFVPPLVPMLV  513 (1088)
T ss_pred             HHHHHHHHHHHhcCCCcccCcCcCccccchhhhhheeee---cccccceeeeeeecCHHHHHHhhhhhcccccccccccc
Confidence            999999999999999999988778889999999999965   44434789999999999999999988888999999999


Q ss_pred             CCCCCcCCCCceecccCccceecCCcHHHHHHH-HhccccChHHHHHHHHhhcCceeEEcHHHHHHHHHHHHcCCCCCCC
Q 001792          446 PPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL  524 (1012)
Q Consensus       446 pPkpW~~~~~GGYl~~~~~~~R~~~s~~q~~~l-~~~~~~~l~~v~~aLN~Lqst~wrIN~~VL~vi~~~w~~g~~i~~l  524 (1012)
                      ||+||+++++||||++++++||++++++|..++ ++.+.++++.||+|||.||+||||||++||||+.++|++||.+.++
T Consensus       514 pPkpWt~~~~Ggyl~~~s~lmRt~g~~~Q~~~llkas~~~~l~~v~daL~~LG~t~WrVN~rvldvV~riw~~Gg~~~~~  593 (1088)
T KOG1038|consen  514 PPKPWTGYDSGGYLFLPSYLMRTHGAKEQVDYLLKASPPGQLDPVFDALDTLGNTKWRVNRRVLDVVIRIWQNGGCFLLI  593 (1088)
T ss_pred             CCCCCCCCCCCceEecchhhhhcCCcHHHHHHHHhcCChhhhHHHHHHHHHhcCCCeeecchHHHHHHHHHhcCCCccCC
Confidence            999999999999999999999999999999865 4456889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhcCCCceeecccCCCCCcccCCCCCC
Q 001792          525 VDRNDVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL  603 (1012)
Q Consensus       525 ~~~~~~p~P~~p-~~~d~~~~~~wk~~~~~~~~~~~~~~S~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~L  603 (1012)
                      +++.+.|+|++| ...|+++++.|+++.+++.+.++++||+|||++|+|+||++|+|+ .||||||||||||+||+||||
T Consensus       594 v~r~~~~lP~~P~~s~dp~~~~~wk~e~k~~~k~~~e~HS~RCD~~ykLsvAr~~~de-~Fy~PHNmDFRGRaYP~~PHl  672 (1088)
T KOG1038|consen  594 VPREDVPLPPKPTLSEDPAELKAWKWEVKKAQKVNRERHSLRCDAEYKLSVARKMKDE-EFYYPHNMDFRGRAYPLPPHL  672 (1088)
T ss_pred             CCCCCCCCCCCCCCCcChHHHHHhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccC-eeecCcccCcCCccCCCCchh
Confidence            999999999999 678999999999999999999999999999999999999999998 699999999999999999999


Q ss_pred             CCCCccchhhhhhcccCccCCcchhHHHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHhhcCCCCCchhhhcCCChH
Q 001792          604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF  683 (1012)
Q Consensus       604 n~qGsDl~RsLL~FaegkpLG~~Gl~WLkIhlAN~~G~G~DK~S~deRi~wv~~n~~~I~~sA~dPl~g~~wW~~Ad~Pw  683 (1012)
                      ||.|||+|||||+||+|+|||++||+|||||+||+|| |+||+|+++|++|+++|+++|+|||++||+|++||++|||||
T Consensus       673 NHLgsDlcRglLeF~~GkPLG~sGL~WLKIHlaNL~~-g~~kl~~~~RlAF~E~hl~DI~DSAd~PLtG~rWW~~AedPf  751 (1088)
T KOG1038|consen  673 NHLGSDLCRGLLEFAEGKPLGPSGLRWLKIHLANLYA-GVDKLSLRDRLAFTEEHLDDIFDSADRPLTGRRWWLKAEDPF  751 (1088)
T ss_pred             cccchHHHHHHHHHhcCCcCCccchhHHHHHHHHHhc-ccccccHHHHHHHHHHHHHHHhhcccCCCcccchhhcCCChH
Confidence            9999999999999999999999999999999999997 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcceeccccccCCCCchhhHHHHhcCChhhhhhcccCCCCCccchhhHHHHHHHHHHHhhcC
Q 001792          684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN  763 (1012)
Q Consensus       684 QfLA~C~El~~a~~~~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~PqDvYs~Va~~V~~~i~~da~  763 (1012)
                      ||||+|||+++|++++||+.|+||+||||||||||||||||||||..||++|||+|+|+|||||++||..|.+.+++||+
T Consensus       752 Q~LA~C~elaea~RspdPeayiSH~PIHQDGSCNGLQHYAALGrD~~GA~~VNLvpsdkPqDVYs~VA~~V~~~~k~DAe  831 (1088)
T KOG1038|consen  752 QCLAACMELAEALRSPDPEAYISHIPIHQDGSCNGLQHYAALGRDSEGAAAVNLVPSDKPQDVYSAVAARVEKIMKQDAE  831 (1088)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHhcCCcccCCCcchHHHHHHhcCccccchhccccCCCCchhHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcccccccccccceeeecccchhhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 001792          764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFE  843 (1012)
Q Consensus       764 ~d~~~~~~~~~ak~l~~~i~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~~~~~~~d~~~~~~~a~ylak~v~~ai~e~f~  843 (1012)
                      +|+      ++|++|.+.||||||||||||+|||||++|||+||.++|++++.++|+.++|.+|+|+++++|+||+|||.
T Consensus       832 ~g~------e~Ak~L~~~V~RKvVKQTVMT~VYGVTyvGAR~QI~krL~e~~~f~d~~~v~~as~Yltk~tf~aLrEmF~  905 (1088)
T KOG1038|consen  832 KGP------EVAKILKDQVTRKVVKQTVMTSVYGVTYVGARLQIKKRLKEIDDFPDEKEVFDASCYLTKKTFEALREMFT  905 (1088)
T ss_pred             cCh------HHHHHHHHHHhHHHhhhheeeeeeeeeEecHHHHHHHHhhhccCcchhHhhhhHHHHHHHHHHHHHHHHHH
Confidence            985      68999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCcEEEEcCCCCeEEEeeccCcceeEEeeeEEEEEe-cC-CCccchhhhhccCCCcchhhh
Q 001792          844 AARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ-RE-GNLVEIRKQRTAFPPNFVHSL  921 (1012)
Q Consensus       844 ~A~~im~WL~~~A~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~~I~t~lq~l~l~-~~-~d~vd~rKq~~Af~PNFIHSL  921 (1012)
                      +|+.||+||++||++|++++.+|+||||+||||||||++.++++|+|.+|++++. .+ +++||.|||++||||||||||
T Consensus       906 ~araIq~WlgecAklIs~~~~~V~WtTPLGLPVVQPYr~~~~~qirt~lQt~~~~~~d~~~~vn~rkQktaFPPNFIHSL  985 (1088)
T KOG1038|consen  906 AARAIQDWLGECAKLISSENSPVEWTTPLGLPVVQPYRQEKKKQIRTGLQTLFLSPRDLTNKVNARKQKTAFPPNFIHSL  985 (1088)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhhcccccceEEeecchhhccccchhhhhccCCCchhhcc
Confidence            9999999999999999999999999999999999999999999999999999998 44 789999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcCCcEEEeeccccCCCCChhHHHHHHHHHHHHhcCcchHHHHHHHHHHh------------CCCCC
Q 001792          922 DGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTS------------YPTLS  989 (1012)
Q Consensus       922 DAsHmmlta~~~~~~Gi~FasVHDSFwThA~dvd~M~~ilRe~FV~Lys~~il~~l~e~f~~~------------~~~~~  989 (1012)
                      |||||||||++|.++||+||+|||||||||||||+||++|||+||+|||+|||++|+|+|++|            |+.+.
T Consensus       986 D~SHMmmTal~C~rqGl~FasVHDsyWTHAcDVd~MN~ilREqFV~Lhs~pIle~L~e~f~~ry~~~~~~~~~~s~l~l~ 1065 (1088)
T KOG1038|consen  986 DGSHMMMTALACERQGLTFASVHDSYWTHACDVDVMNRILREQFVELHSQPILERLLESFEKRYKFKDSDFKNDSQLPLI 1065 (1088)
T ss_pred             cchHHHHHHHHHHhcCCceeeeecchhccccchHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhccccchhhhhccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999994            55678


Q ss_pred             CCCCCCCCCCChhhhccCCCCCC
Q 001792          990 FPPLPERGNFDLEEVLESPYFFN 1012 (1012)
Q Consensus       990 ~p~~P~~G~LDL~~Vl~S~YFF~ 1012 (1012)
                      ||++|++|+|||++||+|+||||
T Consensus      1066 fpplP~rGdfDLk~Vl~S~YFFs 1088 (1088)
T KOG1038|consen 1066 FPPLPKRGDFDLKKVLDSTYFFS 1088 (1088)
T ss_pred             CCCCCCCCCccHHHHhccccccC
Confidence            99999999999999999999997

>PHA00452 T3/T7-like RNA polymerase Back     alignment and domain information
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] Back     alignment and domain information
>PF00940 RNA_pol: DNA-dependent RNA polymerase; InterPro: IPR002092 DNA-directed RNA polymerases 2 Back     alignment and domain information
>PF14700 RPOL_N: DNA-directed RNA polymerase N-terminal; PDB: 3SPA_A 1CEZ_A 1H38_B 1S77_D 1QLN_A 1S0V_D 3E2E_A 2PI4_A 3E3J_B 1S76_D Back     alignment and domain information
>smart00482 POLAc DNA polymerase A domain Back     alignment and domain information
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] Back     alignment and domain information
>cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication Back     alignment and domain information
>cd08638 DNA_pol_A_theta DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation Back     alignment and domain information
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1012
3spa_A1134 Crystal Structure Of Human Mitochondrial Rna Polyme 1e-131
1aro_P883 T7 Rna Polymerase Complexed With T7 Lysozyme Length 3e-72
3e2e_A889 Crystal Structure Of An Intermediate Complex Of T7 4e-72
2pi4_A878 T7rnap Complexed With A Phi10 Protein And Initiatin 7e-72
4rnp_A883 Bacteriophage T7 Rna Polymerase, High Salt Crystal 9e-72
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase Length = 1134 Back     alignment and structure 
Iteration: 1

 Score =  465 bits (1196), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 278/792 (35%), Positives = 430/792 (54%), Gaps = 58/792 (7%)
Query: 249  PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
            P + LL   +V  +++  +  L   G     +    +A      + Q  R+   ++  +N
Sbjct: 373  PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 432
Query: 309  YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
            + RK +     +    E  L R+   +L   + + E          +PW    Q +LG  
Sbjct: 433  HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 482
Query: 369  LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
            L E+L++   +   ++         +P    R   +L H    +  ++ G+++  P  ++
Sbjct: 483  LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 533
Query: 428  GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
             L+++A+  L      VPML PP  W   + G +L  P+ +MRT  G+ + QE L++   
Sbjct: 534  LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 593
Query: 484  NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
              +    +AL  LG+  WRVN +VL ++  ++ + G     V       P+ P   L   
Sbjct: 594  TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 653
Query: 541  MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
                +K   +  +   +K+ +E HS R +   +LS+A+ ++D   F+ PHN+DFRGR YP
Sbjct: 654  AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 712
Query: 599  MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
              PH NHL SDV R +LEFA+GRPLG  GL WLKIHL NL +G  ++     RLAF E  
Sbjct: 713  CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 771
Query: 659  LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
            + +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 772  MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 831
Query: 719  LQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
            LQHYAALGR++V AA+VNL   + P DVYS +A +V    ++D+ +         +A++L
Sbjct: 832  LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 885
Query: 779  IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLT 836
               + RK+VKQTVMT VYGVT  G R QI++RL E   ++D  Q F   A+ Y  +    
Sbjct: 886  EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFK 942
Query: 837  ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVL 895
            +L E+F   R+I  WL + A++I+     V W TPLG+PV+QPY  + +   I   +Q +
Sbjct: 943  SLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSI 1002
Query: 896  ALQREGNLV---EIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHAC 952
                 G++      RKQ+  FPPNF+HSLD SHMM+TA+ C   GL F  VHD +WTHA 
Sbjct: 1003 TYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAA 1062
Query: 953  DVDEMNQILRKKFVELYNMPMLENL------------LESFQTSYPTLSFPPLPERGNFD 1000
            DV  MNQ+ R++FV L++ P+L++L             +  + S    +   +P+ G FD
Sbjct: 1063 DVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFD 1122
Query: 1001 LEEVLESPYFFN 1012
            LE+V  S YFF+
Sbjct: 1123 LEQVKRSTYFFS 1134
>pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme Length = 883 Back     alignment and structure
>pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap And 7nt Of Rna Length = 889 Back     alignment and structure
>pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps. Length = 878 Back     alignment and structure
>pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form, Low Temperature Data, Alpha-Carbons Only Length = 883 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1012
3spa_A1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 0.0
1msw_D883 DNA-directed RNA polymerase, bacteriophage T7 RNA; 1e-168
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-15
3q23_A 1118 Virion RNA polymerase; protein-DNA complex; HET: D 2e-09
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
 Score =  604 bits (1556), Expect = 0.0
 Identities = 283/908 (31%), Positives = 449/908 (49%), Gaps = 56/908 (6%)

Query: 132  QLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWE 191
              +         +  P   S +      K  ++   +     K       +      A  
Sbjct: 256  HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASR 315

Query: 192  RMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAP 249
              V   ++      E + A     +K L   W   L  A+   +        + + +  P
Sbjct: 316  VCVVSVEKPTLPSKEVKHARK--TLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYP 373

Query: 250  HIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY 309
             + LL   +V  +++  +  L   G     +    +A      + Q  R+   ++  +N+
Sbjct: 374  FLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNH 433

Query: 310  KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
             RK +     +    E  L R+   +L   +              +PW    Q +LG  L
Sbjct: 434  YRKYLCLLASDAEVPEPCLPRQYWEALGAPE----------ALREQPWPLPVQMELGKLL 483

Query: 370  VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
             E+L++   +   ++        + P   H +         +  ++ G+++  P  ++ L
Sbjct: 484  AEMLVQATQMPCSLDKPH-RSSRLVPVLYHVYSF-------RNVQQIGILKPHPAYVQLL 535

Query: 430  DRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNC 485
            +++A+  L      VPML PP  W   + G +L  P+ +MRT  G+ + QE L++     
Sbjct: 536  EKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTA 595

Query: 486  MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-----EKPLSED 540
            +    +AL  LG+  WRVN +VL ++  ++ + G     V       P       P S  
Sbjct: 596  LHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAA 655

Query: 541  MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
                 + +  +   +K+ +E HS R +   +LS+A+ ++D   F+ PHN+DFRGR YP  
Sbjct: 656  PARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCP 714

Query: 601  PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
            PH NHL SDV R +LEFA+GRPLG  GL WLKIHL NL  G  ++     RLAF E  + 
Sbjct: 715  PHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLT-GLKKREPLRKRLAFAEEVMD 773

Query: 661  EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
            +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQ
Sbjct: 774  DILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQ 833

Query: 721  HYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID 780
            HYAALGR++V AA+VNL   + P DVYS +A +V    ++D+ +         +A++L  
Sbjct: 834  HYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMR------VAQVLEG 887

Query: 781  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGE 840
             + RK+VKQTVMT VYGVT  G R QI++RL E      +  ++ A+ Y  +    +L E
Sbjct: 888  FITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQE-FVWEASHYLVRQVFKSLQE 946

Query: 841  IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQR 899
            +F   R+I  WL + A++I+     V W TPLG+PV+QPY  + +   I   +Q +    
Sbjct: 947  MFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTH 1006

Query: 900  EGNL---VEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDE 956
             G++      RKQ+  FPPNF+HSLD SHMM+TA+ C   GL F  VHD +WTHA DV  
Sbjct: 1007 NGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSV 1066

Query: 957  MNQILRKKFVELYNMPMLENLLESFQTSYPT------------LSFPPLPERGNFDLEEV 1004
            MNQ+ R++FV L++ P+L++L       + +             +   +P+ G FDLE+V
Sbjct: 1067 MNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQV 1126

Query: 1005 LESPYFFN 1012
              S YFF+
Sbjct: 1127 KRSTYFFS 1134
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A Length = 883 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A Length = 1118 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1012
d1mswd_882 e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [ 0.0
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} Length = 882 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: T7 RNA polymerase
domain: T7 RNA polymerase
species: Bacteriophage T7 [TaxId: 10760]

 Score =  703 bits (1814), Expect = 0.0
 Identities = 214/888 (24%), Positives = 377/888 (42%), Gaps = 91/888 (10%)

Query: 178  LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
            L R Q+  E E++E     ++++  + ++     +    K L       +   I    + 
Sbjct: 31   LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 90

Query: 238  QRTKK-QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE 296
             + K+ ++      ++ +  + VA I +   +  + +        V   A  IG AIE E
Sbjct: 91   VKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTT---VQAVASAIGRAIEDE 147

Query: 297  IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP 356
             R     +    + +K +    E++  +   + +K    ++++  + +   LL  E    
Sbjct: 148  ARFGRIRDLEAKHFKKNV---EEQLNKRVGHVYKKAFMQVVEADMLSKG--LLGGEAWSS 202

Query: 357  WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
            W ++    +G R +E+LIE+  +                          +       +  
Sbjct: 203  WHKEDSIHVGVRCIEMLIESTGMVSLH----------------------RQNAGVVGQDS 240

Query: 417  GVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
              +E  P   E +   A  +  + P + P +VPPK W G   GGY       +    +  
Sbjct: 241  ETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTH- 299

Query: 474  QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG---LVDRNDV 530
             ++AL       M +V++A++   +T W++NK+VL+V   I             ++R ++
Sbjct: 300  SKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREEL 359

Query: 531  LIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
             +  + +  +   +  WK +     + ++ R S+R   E  L  A +  + +  ++P+N+
Sbjct: 360  PMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNM 419

Query: 591  DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
            D+RGR Y      N   +D+ +G+L  A+G+P+GK G  WLKIH AN    GV+K+    
Sbjct: 420  DWRGRVYA-VSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCA--GVDKVPFPE 476

Query: 651  RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
            R+ F+E +   I   A++P+    WW   + PF  LA C   +         S    LP+
Sbjct: 477  RIKFIEENHENIMACAKSPLEN-TWWAEQDSPFCFLAFCFEYAGVQHH--GLSYNCSLPL 533

Query: 711  HQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH- 769
              DGSC+G+QH++A+ R+ V   AVNL+  E   D+Y  +A +V+EI++ D+        
Sbjct: 534  AFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEV 593

Query: 770  ------------------PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
                               +AL  + L   V R + K++VMT  YG    G R+Q+    
Sbjct: 594  VTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDT 653

Query: 812  EEKGHITDDRQLF----AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE----- 862
             +    +    +F     AA Y AK+   ++     AA   M WL   AK++A+E     
Sbjct: 654  IQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKK 713

Query: 863  -------NQPVRWTTPLGLPVVQPYCKNERHLIRTSL------QVLALQREGNLVEIRKQ 909
                      V W TP G PV Q Y K  +  +          Q      + + ++  KQ
Sbjct: 714  TGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQ 773

Query: 910  RTAFPPNFVHSLDGSHMMMTAVACRDAG--LHFAGVHDSFWTHACDVDEMNQILRKKFVE 967
             +   PNFVHS DGSH+  T V   +      FA +HDSF T   D   + + +R+  V+
Sbjct: 774  ESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVD 833

Query: 968  LY-NMPMLENLLESFQTSYPTLS---FPPLPERGNFDLEEVLESPYFF 1011
             Y +  +L +  + F            P LP +GN +L ++LES + F
Sbjct: 834  TYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAF 881

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1012
d1mswd_882 T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760] 100.0
d1qtma2409 DNA polymerase I (Klenow fragment) {Thermus aquati 91.85
d1kfsa2410 DNA polymerase I (Klenow fragment) {Escherichia co 81.87
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: T7 RNA polymerase
domain: T7 RNA polymerase
species: Bacteriophage T7 [TaxId: 10760]

Probab=100.00  E-value=0  Score=1627.81  Aligned_cols=801  Identities=28%  Similarity=0.466  Sum_probs=684.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
Q ss_conf             986652887899999999999999999999999999999970049997169999999899899999999999761-0474
Q 001792          166 EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRT-KKQK  244 (1012)
Q Consensus       166 ~~~~~~~~~~~~l~eRQ~~lE~~~~~~a~~r~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~~~-~~~r  244 (1012)
                      .+.++...--..|++||++||+++++.|++||++.+++++++|.+++++++++++.+|+++|+++|+++++..+. .|.+
T Consensus        19 ~~~~~~~~~~~~L~~rQ~~LE~ea~~~g~~R~r~~~e~~~~rg~~s~~~~g~~li~~~l~~l~~~I~~~~~~~~~~~G~~   98 (882)
T d1mswd_          19 PFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKR   98 (882)
T ss_dssp             HHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             80456665448999999999999999999999999999996377667789999999999999999999999987224875


Q ss_pred             CCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23013320599367999999999987732798885249999999999999999999999983123211211234787889
Q 001792          245 AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK  324 (1012)
Q Consensus       245 ~~y~p~L~~L~pe~lA~Iti~~ll~~~~~~~~~~~~~~~~~a~~IG~aVe~E~~~~~~~~k~~~~~~~~~~~~~~~~~~~  324 (1012)
                      +.|+|||..++||++|+|||+++|++++++   ++.++++++.+||++||+|++++++.+.++++..+...         
T Consensus        99 ~~~~~yL~~l~pe~lA~Itik~~ld~l~~~---~~~~~t~va~~IG~AVE~E~r~~~~~~~~~~~~~k~~~---------  166 (882)
T d1mswd_          99 PTAFQFLQEIKPEAVAYITIKTTLACLTSA---DNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVE---------  166 (882)
T ss_dssp             CTTTTTTTSSCHHHHHHHHHHHHHHHHHHC---SCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHTS---------
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH---------
T ss_conf             167898855997899999999999986479---98749999999999999999999999867687877518---------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH------HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             9999999887787777799999------8631789999998899999999999999871502789999999997567336
Q 001792          325 EKELLRKRVNSLIKSKRVMEAQ------KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR  398 (1012)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~W~~~~~~kvG~~Li~~L~e~~~i~~~~~~~~~~~~~~~paF~  398 (1012)
                        ..++++.+...++...+.+.      ....++.|.+|+..++++||++|+++|++++.+......             
T Consensus       167 --~~~~k~~~~~~kk~~~~~~~~~~~~~~~~~~~~w~~W~~~~r~kVG~~Lle~l~e~tg~~~~~~~-------------  231 (882)
T d1mswd_         167 --EQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ-------------  231 (882)
T ss_dssp             --HHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC-------------
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECC-------------
T ss_conf             --99998751799999999998988875212565667668777998999999999987488434113-------------


Q ss_pred             EEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHH--CCCCC-CCCEEECCCCCCCCCCCEECCCCCC---CEECCCCH
Q ss_conf             765543227998765068999639889999974100--02589-9960208988757998210015764---04327957
Q 001792          399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK--HMLIP-YVPMLVPPKKWKGYNKGGYLFLPSY---VMRTHGSR  472 (1012)
Q Consensus       399 h~~~~~~~~~g~~~~k~~gvi~~~~~~~~~l~~~~~--~~~~~-~lPMlvpP~pW~~~~~GGYl~~~~~---i~R~~~s~  472 (1012)
                              ..|. .+++.+++.++|++.+.++....  ..+.| ++||||||+||+++.+||||+....   ++|++.. 
T Consensus       232 --------~~~~-~~k~~~~v~~t~~~~~~l~~~~~~~~~~~P~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~~~~~~~-  301 (882)
T d1mswd_         232 --------NAGV-VGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSK-  301 (882)
T ss_dssp             -----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSST-
T ss_pred             --------CCCC-CCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCH-
T ss_conf             --------5664-467676134669999999966768875272125445799528778859843057775101024307-


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHH
Q ss_conf             78999983004574789999975168306874879999999997-1998788778878889999999--89889999999
Q 001792          473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV-SGGNIAGLVDRNDVLIPEKPLS--EDMTEVQKWKW  549 (1012)
Q Consensus       473 ~q~~~l~~~~~~~l~~v~~aLN~Lq~t~WrIN~~VL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~~--~d~~~~~~wk~  549 (1012)
                         .++.+....+++.+|++||+||+|||+||+.||+|++.+|+ .|+.++++|+....+.|++|.+  .+++++++|++
T Consensus       302 ---~~~~~~~~~~l~~v~~aLN~LQst~wrIN~~vLdv~~~~~~~~~~~~~~iP~~~~~~~p~~~~~~~~~~~~~~~~~~  378 (882)
T d1mswd_         302 ---KALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKR  378 (882)
T ss_dssp             ---THHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTH
T ss_pred             ---HHHHHCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             ---66640444333789999999815883757999999999985279863456766545468765544368899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHH
Q ss_conf             99999999999555343245799999960599822202467888853579999998872100032322358667812057
Q 001792          550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR  629 (1012)
Q Consensus       550 ~~~~~~~~~~~~~S~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Ypi~~~Ln~qGsDl~RsLL~FaegkpLG~~Gl~  629 (1012)
                      ..+.+++.+.+.+|+||+++++|++|++|+|+++||||||+|||||+||+ |+|||||+|++||||+||+|+|||++|++
T Consensus       379 ~~~~~~~~~~~~~s~r~~~~~~l~~A~~~~~~~~fy~P~~~DfRGR~Y~~-~~ln~qg~D~~rsLl~Fa~~~~l~~~g~~  457 (882)
T d1mswd_         379 AAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYY  457 (882)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEES-SSSCTTSCHHHHHHEEESSCEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC-CCCCCCCCCHHHHHHHCCCCCCCCCHHHH
T ss_conf             88999999999876889999999999983799836642111046655668-87887766254324420678725611588


Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf             99999977207997789988899999976999997203998883355218995889999999999872499985200456
Q 001792          630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP  709 (1012)
Q Consensus       630 WLkIhlAN~~G~G~DK~S~deRi~wv~~n~~~I~dsA~dPl~g~~wW~~Ad~PwQfLA~C~El~~a~~s~~P~~y~S~lP  709 (1012)
                      |||||+||+|  |+||.||+||++||++|++.|+++|+||+.+ .||.+||+||||||+|+||+++..+|  +.|+|+||
T Consensus       458 wL~i~~An~~--g~dK~s~~~r~~w~~~~~~~i~~~~~dp~~~-~~w~~a~~p~qfla~c~e~~~~~~~~--~~~~s~lp  532 (882)
T d1mswd_         458 WLKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLEN-TWWAEQDSPFCFLAFCFEYAGVQHHG--LSYNCSLP  532 (882)
T ss_dssp             HHHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHHH-CGGGGSSSHHHHHHHHHHHHHHHHHC--TTCEECCC
T ss_pred             HHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHCCHHHHHHHHHHHHHHHHHCC--CCCCCCCE
T ss_conf             9999887226--7302318889999997689998653084000-35661754479999999999987547--85422450


Q ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-------------------CH
Q ss_conf             45578871346899720896222012657789864035599999999997410899999-------------------81
Q 001792          710 IHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK-------------------HP  770 (1012)
Q Consensus       710 V~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~d~~~-------------------~~  770 (1012)
                      ||||||||||||||||+||..||++|||+|+|+|+|||+.||+.|.+.+.+|+..+.+.                   ..
T Consensus       533 v~~D~scnG~Qh~aal~~d~~~a~~vNL~p~~~p~DvY~~va~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  612 (882)
T d1mswd_         533 LAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGT  612 (882)
T ss_dssp             EEEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCH
T ss_pred             EEECCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCH
T ss_conf             11126742888999985088889861899899876589999999999998765326631111111111100011001121


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6899999520265222234003210165223079999999877489----998465889988999999999999999899
Q 001792          771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH----ITDDRQLFAAACYAAKVTLTALGEIFEAAR  846 (1012)
Q Consensus       771 ~~~~ak~L~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~----~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~  846 (1012)
                      ....++|+..+|+||+|||+|||+|||||++|+++||.+++.+.+.    .....+.+.++.|+|+++|++|+++|++|+
T Consensus       613 ~~~~~~~l~~~i~Rk~vK~~vMT~~YG~t~~g~~~qi~~~l~~~~~~~~~~~~~~~~~~~~~yla~~i~~~i~~~~~~a~  692 (882)
T d1mswd_         613 KALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAV  692 (882)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77899986123313332035056532642001899999987653002354544221468999999999999888522089


Q ss_pred             HHHHHHHHHHHHHHC------------CCCCEEEECCCCCEEEEEECCCCCEEEEEEEEE-EEE-----ECCCCCCCHHH
Q ss_conf             999999999999981------------899589974899918874125866358863599-999-----52798565555
Q 001792          847 SIMGWLGDCAKVIAS------------ENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV-LAL-----QREGNLVEIRK  908 (1012)
Q Consensus       847 ~im~WL~~~A~~i~~------------~~~pV~WtTPlGlpVvQ~Y~k~~~~~V~t~lq~-i~l-----~~~~d~vd~rK  908 (1012)
                      .+|+||++||+++++            .+.||+||||+||||+|+|++...++|+|.++. ..+     ...++++|++|
T Consensus       693 ~~m~wl~~~a~~i~~~~~~~~~~~~~~~~~pv~W~TP~G~pV~Q~Y~k~~~~~v~t~l~~~~~~~~~~~~~~~~~~d~~K  772 (882)
T d1mswd_         693 EAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHK  772 (882)
T ss_dssp             HHHHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCHHH
T ss_conf             99999999999999752244456774379817989999998988862787089999862615788663058888879567


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHC-CC-CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHC
Q ss_conf             3106999520224369999999998564-99-49884044357989946899999999997609-224888999999748
Q 001792          909 QRTAFPPNFVHSLDGSHMMMTAVACRDA-GL-HFAGVHDSFWTHACDVDEMNQILRKKFVELYN-MPMLENLLESFQTSY  985 (1012)
Q Consensus       909 q~~Af~PNFIHSLDAsHmmlta~~~~~~-Gi-~FasVHDSFwThA~dvd~M~~ilRe~FV~Lys-~~il~~l~e~f~~~~  985 (1012)
                      |++||||||||||||||||||++.|.+. |+ +|++||||||||||||+.|+++||++||+||+ .|+|+++.++|..+|
T Consensus       773 q~~a~~PNfIHSlDAshm~~t~~~~~~~~g~~~fa~VHDsf~tha~dv~~m~~~lRe~Fv~ly~~~~~l~~~~~~~~~~~  852 (882)
T d1mswd_         773 QESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQL  852 (882)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTT
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             51356948888899999999999999857999788872177877205999999999999999847859999999999870


Q ss_pred             CCC---CCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf             999---899999788889010004788889
Q 001792          986 PTL---SFPPLPERGNFDLEEVLESPYFFN 1012 (1012)
Q Consensus       986 ~~~---~~p~~P~~G~LDL~~Vl~S~YFF~ 1012 (1012)
                      +..   ++|++|++|+|||++|++|+||||
T Consensus       853 ~~~~~~~~p~~P~~G~lDl~~V~~S~YfFs  882 (882)
T d1mswd_         853 HESQLDKMPALPAKGNLNLRDILESDFAFA  882 (882)
T ss_dssp             TCTTCCCCCCCCCCCSCCGGGGGTCSSCCC
T ss_pred             CHHHCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf             412002489999999838888647967789
>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure