Citrus Sinensis ID: 001818

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------101
MNNSSLLTTPTSNRPLLFSPFLNPSPLPKRRRFKVSFPRNRSAATSASASAEATPTATPSDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPIKEEEKQTDEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccc
cccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHccccHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEHHHHHHHHcccccccccccccHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHHHcccccEEcccEEEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccc
mnnssllttptsnrpllfspflnpsplpkrrrfkvsfprnrsaatsasasaeatptatpsdniwgprkelqgiqpvvdklsppvrlaTSAVVIAGAVFAGfklgskygggsrnvAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYvtdcndpgavkrEDIEAIASkygvskqdeAFNAELSEIYCRFvtsvlppggedlrgdeVDKIVQFKKalgiddpdaaAMHVEIGRRLFRQRLevgdrdgdMEQLQAFQKLIYVSTLVFgeassfllpwkrvfKVTDSQVEIAIRDNAKRLYASKLKsvgrdvdaEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISlrqhpnadrfargvgpvslvggefdgdrkmdDLKLLYRAYVTdslsggrmeESKLAALNQLRNIFglgkreseAIIVDVTSKVYRKRLgqavsggaleaADSKASFLQSLCEElhfdpqkasEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCvpqqtveaahSDICGSLFEKVVKDAISsgvegydgEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADikgessdtseeepikeeekqtdedEEEWESLETLkkitpskelaekmgkpgqteinlkddlperdrtdlyKTYLLYCLtgevtkipfgasittkkddseYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEifssgtgefdaeevyekipadlsinAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLlacdkavpaeplswelpDELADLFNIYmksnpapekLTRLQYLLGISDSTAAALREMGDSLLsagaeeenfvf
mnnssllttptsnrpllfspflnpsplpkrRRFKVSFPRNRSaatsasasaeatptatpsdniwgprKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLppggedlrgdEVDKIVQFKKalgiddpdaAAMHVEIGRRLFRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASklksvgrdvdaehIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTAlsilksrtrVVKGVAQVVEELDKVLAFNNLLISLRqhpnadrfargVGPVSLVGGEFDGDRKMDDLKLLYRAYVTdslsggrmEESKLAALNQLRNIfglgkreseaiIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSgvegydgevKKAVRKAahglrltreAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELkklitfntlVVTELVAdikgessdtseeepikeeekqtdedeeewesletlkkitpskelaekmgkpgqteinlkddlperdrTDLYKTYLLYCLtgevtkipfgasittkkddsEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEvqkqvglpseYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSsgtgefdaeeVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLlsagaeeenfvf
MNNSSLLTTPTSNRpllfspflnpsplpKRRRFKVSFPRNRsaatsasasaeatptatpsDNIWGPRKELQGIQPVVDKLSPPVRLATSavviagavfagfKLGSKYGGGSRNVaiggaailgaaggamayamnaaVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKraraaenrteaakeLKKLITFNTLVVTELVADIKGESsdtseeepikeeekqtdedeeewesletlkkITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF
**********************************************************************QGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGG****SKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADI*****************************************************************TDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISD*************************
**********************************************************************QGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVG*****ME*LQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLK**G**VDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTAL**************QVVEELDKVLAFNNLLISLRQ*****RFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSG****ES*LAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGG********ASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCV*******EDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIY**********************FNTLVVTELVA*******************************************************INLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGAS*********YVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARI***N***K**GLPSEYAQKIIKNIT*********************IRELKEASVDLDNMISESLRENLFKKTVD**********DAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKN**GVVSSLNDLLACDKAVPA***********ADLFNI*****************LGISDSTA*****************E*FVF
*********PTSNRPLLFSPFLNPSPLPKRRRFKVS**********************PSDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADI*****************************LETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF
***************LLFSPFLNPSPLPKRRRFKVS******************************R*ELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGE*****************DEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAA*********************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNNSSLLTTPTSNRPLLFSPFLNPSPLPKRRRFKVSFPRNRSAATSASASAEATPTATPSDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPxxxxxxxxxxxxxxxxxxxxxKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1009 2.2.26 [Sep-21-2011]
Q8LPR91016 Protein TIC110, chloropla yes no 0.989 0.982 0.702 0.0
O24303996 Protein TIC110, chloropla N/A no 0.985 0.997 0.700 0.0
>sp|Q8LPR9|TI110_ARATH Protein TIC110, chloroplastic OS=Arabidopsis thaliana GN=TIC110 PE=1 SV=1 Back     alignment and function desciption
 Score = 1423 bits (3684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 719/1024 (70%), Positives = 868/1024 (84%), Gaps = 26/1024 (2%)

Query: 3    NSSLLT------TPTSNRPLL--FSPFL----NPSPLPKRRRFKVSFPRNRSAATSASAS 50
            N SL+T      +P+   PLL  F P L    + S    RRR++VSFPR      S++AS
Sbjct: 2    NPSLVTAINAPISPSPRSPLLSHFLPTLPHRFSKSECLSRRRYRVSFPR------SSAAS 55

Query: 51   AEATPTATPSDN--IWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYG 108
            ++    +T + N  I G +KEL G+QP+V+K++PPVRLATSAVV+A ++  G+ LG +  
Sbjct: 56   SDQLSVSTQAKNPGIHGNKKELTGLQPIVEKMTPPVRLATSAVVLAASLATGYGLGLRLA 115

Query: 109  GGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIAS 168
            G SRN+A GGAA+ GAAGGA+ YA+N+AVPEVAA  LH+YV +  DP +V ++D+E IA 
Sbjct: 116  G-SRNIAFGGAAVAGAAGGAVVYALNSAVPEVAAISLHNYVAEFEDPASVTKDDVEKIAD 174

Query: 169  KYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMH 228
            +YGV+K DEAF AE+ +IYCR+VTSVLP  G+ L+GDEV KIV+FK ALGID+PDAAAMH
Sbjct: 175  RYGVNKGDEAFQAEICDIYCRYVTSVLPTEGQSLKGDEVAKIVKFKNALGIDEPDAAAMH 234

Query: 229  VEIGRRLFRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVE 288
            +EIGRR+FRQRLE G+R+GD EQ +AF +L+YVS LVFG+ASSFLLPWKRV KVTD+QVE
Sbjct: 235  MEIGRRIFRQRLETGEREGDAEQRRAFMRLVYVSALVFGDASSFLLPWKRVLKVTDAQVE 294

Query: 289  IAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENI 348
            IAIR+NAK+LYA +LK VGRD++ E++V LR+ QLS++LSD LAEDLFREHTRK+V ENI
Sbjct: 295  IAIRENAKQLYAERLKLVGRDINVENLVDLRKSQLSFKLSDELAEDLFREHTRKVVVENI 354

Query: 349  VTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEF 408
             +ALSILKSRTR  K +A VVEEL+KVL FNNLL+SL+ H  AD+FARGVGP+SL+G E 
Sbjct: 355  SSALSILKSRTRAAKSLASVVEELEKVLEFNNLLVSLKSHSEADQFARGVGPISLIGDES 414

Query: 409  DGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVY 468
            D +R+MDDLKLLYRAYVTD+LSGGR+EE+KL A++QLRNI GLGKRE+EAI VDVTSK Y
Sbjct: 415  DFERRMDDLKLLYRAYVTDALSGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKSY 474

Query: 469  RKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELND 528
            RKRL  AVS G LEA DSKA +LQ LCEELHFD QKA  IHEEIYRQKLQQCV DGEL+D
Sbjct: 475  RKRLANAVSSGDLEAQDSKAKYLQKLCEELHFDAQKAGAIHEEIYRQKLQQCVTDGELSD 534

Query: 529  EDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAH 588
            ++VAALLRLRVMLC+PQQTV+ AH++ICG++FEKVV+DAISSGV+GYD E +K+VRKAAH
Sbjct: 535  DNVAALLRLRVMLCIPQQTVDTAHAEICGTIFEKVVRDAISSGVDGYDAETRKSVRKAAH 594

Query: 589  GLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIK 648
            GLRL+RE AMSIASKAVRR+F  YI+RARAAENRT++AKELKK+I FNTLVVTE+VADIK
Sbjct: 595  GLRLSRETAMSIASKAVRRVFTNYIRRARAAENRTDSAKELKKMIAFNTLVVTEMVADIK 654

Query: 649  GESSDTS-EEEPIKEEEKQTDEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDL 707
            GESSD + EE+P+  +EK+ D+++EEW SLE+L+K  P KELAEKMGKPGQTEI LKDDL
Sbjct: 655  GESSDKAPEEDPV--QEKEEDDEDEEWGSLESLRKTRPDKELAEKMGKPGQTEITLKDDL 712

Query: 708  PERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVH 767
            P+RDR DLYKTYLLYC+TGEVT+IPFGA ITTK+DDSEY+LL+QLGGILGL++KEIV++H
Sbjct: 713  PDRDRIDLYKTYLLYCVTGEVTRIPFGAQITTKRDDSEYLLLNQLGGILGLSSKEIVNIH 772

Query: 768  RGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIE 827
             GLAEQAFRQQAEVILADGQLTKAR+EQL+E+QKQVGLP   A+K+IKNITTTKMA AIE
Sbjct: 773  VGLAEQAFRQQAEVILADGQLTKARVEQLDELQKQVGLPQPQAEKVIKNITTTKMANAIE 832

Query: 828  TAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKI 887
            TAV QG+LNIKQIRELKEA+V LD+MI+ SLRE LFKKTV +IFSSGTGEFD  EVY+ I
Sbjct: 833  TAVNQGRLNIKQIRELKEANVSLDSMIAVSLREKLFKKTVSDIFSSGTGEFDETEVYQTI 892

Query: 888  PADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEP 947
            P+DLSI+ EKA+RVVH+LA++RLSNSL+QAV+LLRQ+N +GVV SLNDLLACDKAVPAEP
Sbjct: 893  PSDLSIDVEKAKRVVHDLAQSRLSNSLVQAVALLRQRNSKGVVLSLNDLLACDKAVPAEP 952

Query: 948  LSWELPDELADLFNIYMKSN--PAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEE 1005
            +SWE+ +EL+DL+ IY KS+  PAPEK+ RLQYLLGI DSTA ALREM D  LS+ AEE 
Sbjct: 953  MSWEVSEELSDLYAIYSKSDPKPAPEKVLRLQYLLGIDDSTATALREMEDGALSSAAEEG 1012

Query: 1006 NFVF 1009
            NFVF
Sbjct: 1013 NFVF 1016
Involved in protein precursor import into chloroplasts. Forms a voltage-dependent cation-selective channel at the inner envelope of chloroplasts, which specifically responds to a transit peptide. Associates with both the precursor and mature forms of the preprotein.
Arabidopsis thaliana (taxid: 3702)
>sp|O24303|TI110_PEA Protein TIC110, chloroplastic OS=Pisum sativum GN=TIC110 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1009
3594785031007 PREDICTED: protein TIC110, chloroplastic 0.989 0.991 0.771 0.0
1477897321061 hypothetical protein VITISV_038562 [Viti 0.989 0.940 0.730 0.0
2241466401013 predicted protein [Populus trichocarpa] 0.988 0.984 0.741 0.0
356553146996 PREDICTED: uncharacterized protein LOC10 0.985 0.997 0.760 0.0
2555533731019 conserved hypothetical protein [Ricinus 0.999 0.989 0.754 0.0
356500924995 PREDICTED: uncharacterized protein LOC10 0.984 0.997 0.756 0.0
2241247241011 predicted protein [Populus trichocarpa] 0.976 0.974 0.748 0.0
4494549791014 PREDICTED: protein TIC110, chloroplastic 0.994 0.989 0.747 0.0
152210091016 translocon at the inner envelope membran 0.989 0.982 0.702 0.0
204667681016 chloroplast inner envelope protein, puta 0.989 0.982 0.701 0.0
>gi|359478503|ref|XP_002276796.2| PREDICTED: protein TIC110, chloroplastic-like [Vitis vinifera] gi|297745792|emb|CBI15848.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1555 bits (4026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/1015 (77%), Positives = 894/1015 (88%), Gaps = 17/1015 (1%)

Query: 3    NSSLLTTPTSNRPLLFSPFLNPSP-------LPKRRRFKVSFPRNRSAATSASASAEATP 55
            N SLLT P  ++    SPFLNP+P       L +RRR+++S  R+ S       S   +P
Sbjct: 2    NPSLLTAPPPSQH--SSPFLNPTPFRFSTTSLTRRRRYRISLIRSSSTPPDPLTS---SP 56

Query: 56   TATPSDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVA 115
             +  SD ++G R+EL GIQP+VD LSPP+RL +SA+++AGA+ AG+ LG ++G  SRN A
Sbjct: 57   PSVTSD-VFGGRRELSGIQPLVDSLSPPLRLVSSALIVAGAIAAGYGLGFRFGK-SRNTA 114

Query: 116  IGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQ 175
            +GGA  +GAAGGA AYA+NA VPEVAA  LH+YV  C+DPGAVK+EDIE IA+KYGVSKQ
Sbjct: 115  LGGAVAIGAAGGAAAYALNACVPEVAAANLHNYVAGCDDPGAVKKEDIEEIANKYGVSKQ 174

Query: 176  DEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRL 235
            DEAFNAEL ++YCRFVTSV+PPG EDL+GDEVD I++FK +LGIDDPDAAAMH+EIGRR+
Sbjct: 175  DEAFNAELCDLYCRFVTSVVPPGSEDLKGDEVDTIIKFKSSLGIDDPDAAAMHMEIGRRI 234

Query: 236  FRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNA 295
            FRQRLE GDRDGD+EQ +AFQKL+YVSTLVFGEAS FLLPWKRVF+VTDSQVE+A+RDNA
Sbjct: 235  FRQRLETGDRDGDIEQRRAFQKLVYVSTLVFGEASKFLLPWKRVFRVTDSQVEVAVRDNA 294

Query: 296  KRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSIL 355
            +RLYA KLKSVGRDVD   +V LRE QLS  LSD LAED+F+EHTRKLVEENI TALSIL
Sbjct: 295  QRLYAFKLKSVGRDVDVNQLVSLREAQLSCLLSDELAEDMFKEHTRKLVEENISTALSIL 354

Query: 356  KSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMD 415
            KSRTR V+G  QVVEEL+K LAFNNLLISL+ HP+A RFA GVGP+SL+GGE+DGDRKMD
Sbjct: 355  KSRTRAVRGATQVVEELNKALAFNNLLISLKNHPDAGRFACGVGPISLMGGEYDGDRKMD 414

Query: 416  DLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQA 475
            DLKLLYRAYV DSLS GRM E+KLAALNQL+NIFGLGKRE+E I++DVTSK YRKRL Q+
Sbjct: 415  DLKLLYRAYVADSLSSGRMVENKLAALNQLKNIFGLGKRETEGIMLDVTSKAYRKRLAQS 474

Query: 476  VSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALL 535
            VSGG LEAADSKA+FLQ++C+ELHFDP+KASEIHEEIYRQKLQQCVADGELN+EDVA LL
Sbjct: 475  VSGGDLEAADSKAAFLQNICDELHFDPKKASEIHEEIYRQKLQQCVADGELNEEDVAILL 534

Query: 536  RLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTRE 595
            RLRVMLCVPQQTVEAAH+DICGSLFEKVVKDAI+SG++GYD +VKK+VRKAAHGLRLTRE
Sbjct: 535  RLRVMLCVPQQTVEAAHADICGSLFEKVVKDAIASGIDGYDDDVKKSVRKAAHGLRLTRE 594

Query: 596  AAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTS 655
            AAMSIAS AVR+IF+ Y+KR+RAA NR EAAKELKK+I FN+LVVTELVADIKGESSD +
Sbjct: 595  AAMSIASTAVRKIFMNYVKRSRAAGNRIEAAKELKKMIAFNSLVVTELVADIKGESSDAA 654

Query: 656  EEEPIKEEEKQTDEDEEEWESLETLKKITPSKELAEKMG-KPGQTEINLKDDLPERDRTD 714
             EEPIKEEE Q +ED ++W+SLETL+KI P ++L  K+G + GQTEI LKDDLPERDRTD
Sbjct: 655  SEEPIKEEEVQIEED-DDWDSLETLRKIKPREKLTAKLGRRGGQTEITLKDDLPERDRTD 713

Query: 715  LYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQA 774
            LYKTYLL+CLTGEVTKIPFGA ITTKKDDSEY+LL+QLGGILGLT KEIV+VHR LAEQA
Sbjct: 714  LYKTYLLFCLTGEVTKIPFGAQITTKKDDSEYLLLNQLGGILGLTDKEIVEVHRSLAEQA 773

Query: 775  FRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK 834
            FRQQAEVILADGQLTKARIEQLNEVQKQVGLP +YAQK+IKNITTTKM AAIETAV+QG+
Sbjct: 774  FRQQAEVILADGQLTKARIEQLNEVQKQVGLPPQYAQKVIKNITTTKMGAAIETAVSQGR 833

Query: 835  LNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSIN 894
            LNIKQIRELKEASVDLD+M+SESLREN+FKKTVDE+FSSGTGEFD EEVYEKIP DL+IN
Sbjct: 834  LNIKQIRELKEASVDLDSMLSESLRENVFKKTVDEMFSSGTGEFDGEEVYEKIPLDLNIN 893

Query: 895  AEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPD 954
            AEKA+ VVHELAR RLSNSLIQAVSLLRQ+N  GVVSSLNDLLACDKAVP+EPLSWE+ +
Sbjct: 894  AEKAKGVVHELARTRLSNSLIQAVSLLRQRNSSGVVSSLNDLLACDKAVPSEPLSWEVTE 953

Query: 955  ELADLFNIYMKSNPAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF 1009
            ELADLF IYMKS+PAPEKL+RLQYLLGISDSTAA LREMGD +L  G EEE FVF
Sbjct: 954  ELADLFAIYMKSDPAPEKLSRLQYLLGISDSTAATLREMGDRVLQIGTEEE-FVF 1007

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147789732|emb|CAN60839.1| hypothetical protein VITISV_038562 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146640|ref|XP_002326080.1| predicted protein [Populus trichocarpa] gi|222862955|gb|EEF00462.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356553146|ref|XP_003544919.1| PREDICTED: uncharacterized protein LOC100810630 [Glycine max] Back     alignment and taxonomy information
>gi|255553373|ref|XP_002517728.1| conserved hypothetical protein [Ricinus communis] gi|223543126|gb|EEF44660.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356500924|ref|XP_003519280.1| PREDICTED: uncharacterized protein LOC100810328 [Glycine max] Back     alignment and taxonomy information
>gi|224124724|ref|XP_002319406.1| predicted protein [Populus trichocarpa] gi|222857782|gb|EEE95329.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454979|ref|XP_004145231.1| PREDICTED: protein TIC110, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15221009|ref|NP_172176.1| translocon at the inner envelope membrane of chloroplasts 110 [Arabidopsis thaliana] gi|75157412|sp|Q8LPR9.1|TI110_ARATH RecName: Full=Protein TIC110, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 110; Short=AtTIC110; Flags: Precursor gi|20453114|gb|AAM19799.1| At1g06940/F4H5_1 [Arabidopsis thaliana] gi|332189936|gb|AEE28057.1| translocon at the inner envelope membrane of chloroplasts 110 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|20466768|gb|AAM20701.1| chloroplast inner envelope protein, putative [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1009
TAIR|locus:20074371016 TIC110 "translocon at the inne 0.965 0.958 0.665 0.0
TAIR|locus:2007437 TIC110 "translocon at the inner envelope membrane of chloroplasts 110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3278 (1159.0 bits), Expect = 0., P = 0.
 Identities = 654/982 (66%), Positives = 774/982 (78%)

Query:    30 RRRFKVSFPRNRXXXXXXXXXXXXXXXXXXXDNIWGPRKELQGIQPVVDKLSPPVRLATS 89
             RRR++VSFPR+                      I G +KEL G+QP+V+K++PPVRLATS
Sbjct:    41 RRRYRVSFPRS----SAASSDQLSVSTQAKNPGIHGNKKELTGLQPIVEKMTPPVRLATS 96

Query:    90 XXXXXXXXXXXXKLGSKYGGGSRNVXXXXXXXXXXXXXXXXXXXXXXVPEVAAKRLHDYV 149
                          LG +  G SRN+                      VPEVAA  LH+YV
Sbjct:    97 AVVLAASLATGYGLGLRLAG-SRNIAFGGAAVAGAAGGAVVYALNSAVPEVAAISLHNYV 155

Query:   150 TDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDK 209
              +  DP +V ++D+E IA +YGV+K DEAF AE+ +IYCR+VTSVLP  G+ L+GDEV K
Sbjct:   156 AEFEDPASVTKDDVEKIADRYGVNKGDEAFQAEICDIYCRYVTSVLPTEGQSLKGDEVAK 215

Query:   210 IVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQLQAFQKLIYVSTLVFGEA 269
             IV+FK ALGID+PDAAAMH+EIGRR+FRQRLE G+R+GD EQ +AF +L+YVS LVFG+A
Sbjct:   216 IVKFKNALGIDEPDAAAMHMEIGRRIFRQRLETGEREGDAEQRRAFMRLVYVSALVFGDA 275

Query:   270 SSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSD 329
             SSFLLPWKRV KVTD+QVEIAIR+NAK+LYA +LK VGRD++ E++V LR+ QLS++LSD
Sbjct:   276 SSFLLPWKRVLKVTDAQVEIAIRENAKQLYAERLKLVGRDINVENLVDLRKSQLSFKLSD 335

Query:   330 ALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHP 389
              LAEDLFREHTRK+V ENI +ALSILKSRTR  K +A VVEEL+KVL FNNLL+SL+ H 
Sbjct:   336 ELAEDLFREHTRKVVVENISSALSILKSRTRAAKSLASVVEELEKVLEFNNLLVSLKSHS 395

Query:   390 NADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIF 449
              AD+FARGVGP+SL+G E D +R+MDDLKLLYRAYVTD+LSGGR+EE+KL A++QLRNI 
Sbjct:   396 EADQFARGVGPISLIGDESDFERRMDDLKLLYRAYVTDALSGGRLEENKLVAMSQLRNIL 455

Query:   450 GLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIH 509
             GLGKRE+EAI VDVTSK YRKRL  AVS G LEA DSKA +LQ LCEELHFD QKA  IH
Sbjct:   456 GLGKREAEAISVDVTSKSYRKRLANAVSSGDLEAQDSKAKYLQKLCEELHFDAQKAGAIH 515

Query:   510 EEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAIS 569
             EEIYRQKLQQCV DGEL+D++VAALLRLRVMLC+PQQTV+ AH++ICG++FEKVV+DAIS
Sbjct:   516 EEIYRQKLQQCVTDGELSDDNVAALLRLRVMLCIPQQTVDTAHAEICGTIFEKVVRDAIS 575

Query:   570 SGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKXXXXXXXXXXXXXXL 629
             SGV+GYD E +K+VRKAAHGLRL+RE AMSIASKAVRR+F  YI+              L
Sbjct:   576 SGVDGYDAETRKSVRKAAHGLRLSRETAMSIASKAVRRVFTNYIRRARAAENRTDSAKEL 635

Query:   630 KKLITFNTLVVTELVADIKGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPSKEL 689
             KK+I FNTLVVTE+VADIKGES                                 P KEL
Sbjct:   636 KKMIAFNTLVVTEMVADIKGESSDKAPEEDPVQEKEEDDEDEEWGSLESLRKT-RPDKEL 694

Query:   690 AEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLL 749
             AEKMGKPGQTEI LKDDLP+RDR DLYKTYLLYC+TGEVT+IPFGA ITTK+DDSEY+LL
Sbjct:   695 AEKMGKPGQTEITLKDDLPDRDRIDLYKTYLLYCVTGEVTRIPFGAQITTKRDDSEYLLL 754

Query:   750 SQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEY 809
             +QLGGILGL++KEIV++H GLAEQAFRQQAEVILADGQLTKAR+EQL+E+QKQVGLP   
Sbjct:   755 NQLGGILGLSSKEIVNIHVGLAEQAFRQQAEVILADGQLTKARVEQLDELQKQVGLPQPQ 814

Query:   810 AQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDE 869
             A+K+IKNITTTKMA AIETAV QG+LNIKQIRELKEA+V LD+MI+ SLRE LFKKTV +
Sbjct:   815 AEKVIKNITTTKMANAIETAVNQGRLNIKQIRELKEANVSLDSMIAVSLREKLFKKTVSD 874

Query:   870 IFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGV 929
             IFSSGTGEFD  EVY+ IP+DLSI+ EKA+RVVH+LA++RLSNSL+QAV+LLRQ+N +GV
Sbjct:   875 IFSSGTGEFDETEVYQTIPSDLSIDVEKAKRVVHDLAQSRLSNSLVQAVALLRQRNSKGV 934

Query:   930 VSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNP--APEKLTRLQYLLGISDSTA 987
             V SLNDLLACDKAVPAEP+SWE+ +EL+DL+ IY KS+P  APEK+ RLQYLLGI DSTA
Sbjct:   935 VLSLNDLLACDKAVPAEPMSWEVSEELSDLYAIYSKSDPKPAPEKVLRLQYLLGIDDSTA 994

Query:   988 AALREMGDSLLSAGAEEENFVF 1009
              ALREM D  LS+ AEE NFVF
Sbjct:   995 TALREMEDGALSSAAEEGNFVF 1016


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1009       897   0.00088  122 3  11 22  0.42    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  344 KB (2173 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  79.03u 0.13s 79.16t   Elapsed:  00:00:03
  Total cpu time:  79.03u 0.13s 79.16t   Elapsed:  00:00:03
  Start:  Tue May 21 01:11:24 2013   End:  Tue May 21 01:11:27 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009658 "chloroplast organization" evidence=IMP
GO:0031897 "Tic complex" evidence=TAS
GO:0045037 "protein import into chloroplast stroma" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0016020 "membrane" evidence=IDA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
GO:0009536 "plastid" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LPR9TI110_ARATHNo assigned EC number0.70210.98900.9822yesno
O24303TI110_PEANo assigned EC number0.70020.98510.9979N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023971001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (1007 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021997001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (434 aa)
   •• • 0.812
GSVIVG00024636001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (513 aa)
   •• • 0.593
GSVIVG00027973001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (1375 aa)
   •• • 0.524
GSVIVG00024273001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (624 aa)
   •  • 0.501
GSVIVG00014557001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (258 aa)
      • 0.480
GSVIVG00036085001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (1275 aa)
    • • 0.479
GSVIVG00003602001
SubName- Full=Chromosome undetermined scaffold_146, whole genome shotgun sequence; (310 aa)
   •• • 0.410
GSVIVG00014090001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (308 aa)
   •• • 0.405
GSVIVG00036653001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (293 aa)
      • 0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1009
PF05099140 TerB: Tellurite resistance protein TerB; InterPro: 95.25
cd07311150 terB_like_1 tellurium resistance terB-like protein 93.09
cd07313104 terB_like_2 tellurium resistance terB-like protein 93.01
cd07316106 terB_like_DjlA N-terminal tellurium resistance pro 88.29
PF0373573 ENT: ENT domain; InterPro: IPR005491 This entry re 86.98
PF08429335 PLU-1: PLU-1-like protein; InterPro: IPR013637 Thi 86.81
cd07316106 terB_like_DjlA N-terminal tellurium resistance pro 86.58
PF05099140 TerB: Tellurite resistance protein TerB; InterPro: 86.04
cd07311150 terB_like_1 tellurium resistance terB-like protein 85.59
cd07176111 terB tellurite resistance protein terB. This famil 85.34
PF04391188 DUF533: Protein of unknown function (DUF533); Inte 82.49
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 82.35
cd07176111 terB tellurite resistance protein terB. This famil 82.32
cd07313104 terB_like_2 tellurium resistance terB-like protein 81.36
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information 
Probab=95.25  E-value=0.05  Score=52.21  Aligned_cols=113  Identities=23%  Similarity=0.383  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccch
Q 001818          772 EQAFRQQAEVILADGQLTKARIEQLNEVQ-KQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDL  850 (1009)
Q Consensus       772 eqAyrqqaeqiL~dG~Lt~akae~L~eiq-~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L  850 (1009)
                      ..+++=.+..+.+||.++++..+.+.++. .+.+++++..+.++..+...+-.          ..+..+.      --.|
T Consensus        24 ~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~------~~~l   87 (140)
T PF05099_consen   24 EALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQE----------PIDLEEL------LREL   87 (140)
T ss_dssp             HHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHH----------CCHHHHH------HHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhc----------cccHHHH------HHHH
Confidence            34455567788899999999999998877 99999999999887765443332          2222222      2235


Q ss_pred             hhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHH
Q 001818          851 DNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARR  900 (1009)
Q Consensus       851 ~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~  900 (1009)
                      .+.++.+.|..+++..+.=+.++|...-.+.+++.++...|+|+.+.-+.
T Consensus        88 ~~~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~  137 (140)
T PF05099_consen   88 RDSLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQR  137 (140)
T ss_dssp             CTS--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS----
T ss_pred             HHhhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhc
Confidence            55566999999999999999999999999999999999999999876554

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1 Back     alignment and domain information
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2 Back     alignment and domain information
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins Back     alignment and domain information
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin Back     alignment and domain information
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes [] Back     alignment and domain information
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins Back     alignment and domain information
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1 Back     alignment and domain information
>cd07176 terB tellurite resistance protein terB Back     alignment and domain information
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>cd07176 terB tellurite resistance protein terB Back     alignment and domain information
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1009
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 81.4 bits (200), Expect = 9e-16
 Identities = 92/651 (14%), Positives = 183/651 (28%), Gaps = 183/651 (28%)

Query: 127 GAMAYAMNAAVPEVAAKRLHDYVTDCND-----PGAVKREDIEAI-ASKYGVSKQDEAFN 180
           G   Y     +       + ++  DC D        + +E+I+ I  SK  VS     F 
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 181 AELS---EIYCRFVTSVLPPGGEDL----------RGDEVDKIVQFKKALGIDDPDAAAM 227
             LS   E+  +FV  VL    + L                  ++ +  L  D+   A  
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 228 HVEIGRRLFRQRLEVGDRDGDMEQLQ-AFQKL---IYV----------STLVFGEASSFL 273
           +V         RL+         +L+ A  +L     V          + +      S+ 
Sbjct: 130 NV--------SRLQ------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 274 LPWKRVFKV---TDSQVEI--AIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLS 328
           +  K  FK+             + +  ++L      +     D    ++LR   +   L 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 329 DALAEDLFREHTRKLV------EENIVTALSILKSRTRVV---KGVAQVV---------- 369
             L     + +   L+            A ++   +  +    K V   +          
Sbjct: 236 RLLKS---KPYENCLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 370 ---------EELDKVLAFNNLLISLRQHPNADRFARGVGP--VSLVGGEFDGDRKMDDLK 418
                    +E+  +L    L    +  P   R      P  +S++           D  
Sbjct: 292 DHHSMTLTPDEVKSLLL-KYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWD-- 345

Query: 419 LLYRAYVTDSLSGGRMEESKLAALN--QLRNIFGLGKRESEAII---VDVTSKVYRKRL- 472
             ++    D L+   + ES L  L   + R +F     +  ++      + + +    + 
Sbjct: 346 -NWKHVNCDKLT--TIIESSLNVLEPAEYRKMF-----DRLSVFPPSAHIPTILL-SLIW 396

Query: 473 GQAVSGGALEAADSKASFLQSLCEELHFDPQKAS-EIHEEIYRQKLQQCVADGELNDEDV 531
              +    +   +       SL E+    P++++  I   IY +   +   +  L+   V
Sbjct: 397 FDVIKSDVMVVVNKLHK--YSLVEK---QPKESTISIP-SIYLELKVKLENEYALHRSIV 450

Query: 532 AALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAH--G 589
                  +        +   + D     +  +          G+            H   
Sbjct: 451 D---HYNIPKTFDSDDLIPPYLD--QYFYSHI----------GH------------HLKN 483

Query: 590 LRLTREAAMSIASKAVRRIFVIY------IKRARAAENRTEAAKEL-------KKLITFN 636
           +       +       R +F+ +      I+    A N + +           K  I  N
Sbjct: 484 IEHPERMTL------FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 637 TLVVTELVADIK------------GESSD------TSEEEPIKEE-EKQTD 668
                 LV  I              + +D       +E+E I EE  KQ  
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1009
d2ou3a1160 Tellurite resistance protein of COG3793 {Nostoc pu 93.28
d2ou3a1160 Tellurite resistance protein of COG3793 {Nostoc pu 92.75
>d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
class: All alpha proteins
fold: TerB-like
superfamily: TerB-like
family: COG3793-like
domain: Tellurite resistance protein of COG3793
species: Nostoc punctiforme pcc 73102 [TaxId: 63737]

Probab=93.28  E-value=0.22  Score=25.27  Aligned_cols=112  Identities=8%  Similarity=0.025  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHH
Q ss_conf             99999999981127789898999999999809995899999999999899999999998288799999999980551111
Q 001818          773 QAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDN  852 (1009)
Q Consensus       773 qAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kls~~ie~~va~GkLs~~~V~eLke~gV~L~~  852 (1009)
                      -+++-.+..+.+||..+++.++++..+..+++.+++...++.......               ...+.   .     ...
T Consensus        30 ~~~~~L~~vA~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~---~-----~~~   86 (160)
T d2ou3a1          30 IYMKSVLTCAKADGVISPEEKDWALGFCASWGVADWVIEDLKTYEADE---------------ALEEV---I-----ARS   86 (160)
T ss_dssp             HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHCCCCS---------------CHHHH---H-----TTC
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH---------------HHHHH---H-----HHC
T ss_conf             999999999986689899999999999988512305788887650122---------------56888---8-----773


Q ss_pred             HCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             0039999887799999987228888856899973000148998999999999999
Q 001818          853 MISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELAR  907 (1009)
Q Consensus       853 ~ised~R~~LFkK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~  907 (1009)
                      ..+.+.|..+++..+.=+.+||.-+-.+.+++.++...|+|+.+....|......
T Consensus        87 ~~~~~~~~~ll~~l~~va~aDG~~~~~E~~~l~~ia~~Lgi~~~~~~~l~~~~~~  141 (160)
T d2ou3a1          87 PQVSMAQRDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYY  141 (160)
T ss_dssp             TTGGGCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             7999999999999999998089899999999999999949999999999999999
>d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure