Citrus Sinensis ID: 001884

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000
MDCNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASVRRPVAPYQPPQKPTYSNVGTRNNFGSTFTGSNFQHQRPQQPAQPGINGDPTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGEQSFPTATNLGQPAFFQKKDVPSQGACKLEQVFKGNLAADNSKTACPQKTGCTSDFGKEKMNGKRGRKQVVESSESCSTESSSDFEVDVPVDESGDFNGGENFGHNKYQNPRRSSRRKQQVSYKENLSDDDDLVSHPKRFKGNGSSCATEKENEDALREEAAKLDNQSGSGAAVREEQKESKKKDSAHFQESLSNVKTDTEMAIGKETAEENGCVNISVAHGDKKMSEATTDSAVDSTSGSAVNPELFEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPSGFKLKITWLEPDSDADDEKEKEWVNNGLPFSCGKFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEEREGVLKGFFEIDPASLPLNLEEIAVPEILKEETGATHSNYSLGSFDREKSQAGYEGCTSMHQDELKETCLEPANDRSVEDIEHRSATSASNADAIEIPDPEFYNFDAEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSLPNNAICWHDERMPICCGRFKIKRGKLKGYPSTVSFSHMVSAEPASKKNEYTILPRNGEIWALYKNWNAEIKCSDLENCEYDIVEIIEAQNLHIEVLFLERVAGFNSVFKPQKESASAVMKISAEELLRFSHQIPAFKLTEERDGSLRGCWELDPAALPVHYFLL
ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHccccEEEcccccccccccccEEEccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEcccccccccEEEEEEEcccccEEEEEEccccccccHHHHccEEcccccccccEEEcccEEEccccccEEEEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccEEcEEEEEccccccccEEEEEcEEEcccEEEEEEcccccccEEEEccccccccccccccEEEccccccccccccEEcccccccHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccEEccccccccccccccccccccccEEEEEcccccccccccEEEEEEEccccEEEEEEccccccccccccccccccccccEEEEEEccEEEEEcccccEEEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEEEEcccEEEEEEEEEEcccccEEEccccccccEEEEcHHHHcccccccccEEccccccccccccEEccccccccccccc
ccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHEEcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEHccHHHHHHHHHHHHHHHccEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHccHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHcccccEEEEEccccccccEEEEEEEEEccccEEEEEEEcccccccccccccHHccccccEccEEEEccEEEEcccccEEEEEEEEEcccccEEEEEcccccEEEEEEcccccccccccccccEEEEEEEEEccccHcccEEEEEEEEEccEEEEEEEcccccccEEEEcHHHHHEEccccccEEEccccccccccccEEcccHcccHHHHHHcccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHcccccEEEEEccccccccEEEEEEEEEccccEEEEEEEEcccccccccHHHHHccccEEcEEEEEEccEEEEEccccEEEEEEEEEEcccccEEEEEcccccEEEEEEcccccccccccccccEEEEEEEEcccccEEEEEEEEEccEEEEEEEccccccEEEEEcHHHHHccccccccEEEcccccccccccEEcccccccHHHccc
MDCNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHcsaenklfgnEMDWYGLLQIEQTANEATIKKQYRKFALqlhpdknkfpgaETAFKLIGEAQRVLLDKDKRSLHDmkrkasvrrpvapyqppqkptysnvgtrnnfgstftgsnfqhqrpqqpaqpgingdptfwtmcpfctvRYQYYRNVINKSIIcqacnkpfvayergeqsfptatnlgqpaffqkkdvpsqgacklEQVFKgnlaadnsktacpqktgctsdfgkekmngkrgrKQVVESsescstesssdfevdvpvdesgdfnggenfghnkyqnprrssrrkqqvsykenlsddddlvshpkrfkgngsscateKENEDALREEAAKldnqsgsgaAVREEQKESKKKDSAHFQESLsnvktdteMAIGKEtaeengcvnisvahgdkkmseattdsavdstsgsavnpelfeypdpdfndfekdrKEECFLVGQVWAIYDTVDAMPRFYARIRKvcpsgfklkitwlepdsdaddekekewvnnglpfscgkfkhgnsedtedrpmfSHLVSWekgsgrntykiyprkgevwglfkcwdfnwisdedtnrkyDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCrkgkegtdtviippaellrfshsvpcfkltgeeregvlkgffeidpaslplnleeiavpeilkeetgathsnyslgsfdreksqagyegctsmhqdelketclepandrsvediehrsatsasnadaieipdpefynfdaekskdrlqvgqiwslysdedglpkyyGQIVKVQTDPDFKLYLRWLEscslpnnaicwhdermpiccgrfkikrgklkgypstvsfshmvsaepaskkneytilprnGEIWALYKNWnaeikcsdlencEYDIVEIIEAQNLHIEVLFLERVagfnsvfkpqkeSASAVMKISAEELLRfshqipafklteerdgslrgcweldpaalpvhyfll
MDCNKDEAIrvkgiaeskmqsnDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLldkdkrslhdmkrkasvrrpvapyqppqkptysnvgTRNNFGSTFTGSNFQHQRPQQPAQPGINGDPTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGEQSFPTATNLGQPAFFQKKDVPSQGACKLEQVFKGNlaadnsktacpqktgctsdfgkekmngkrgrkqvvessescstesssdfevdVPVDESgdfnggenfghnkyqnprrssrrKQQVSYkenlsddddlvshpkrfkgngsscatekENEDALREEAakldnqsgsgaavreeqkeskkkdsahfqeslsnvktdtEMAIGKetaeengcvNISVAHGDKKmseattdsavdstsgsavnpelfeypDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPSGFKLKITWLEPDSDADDEKEKEWvnnglpfscgkfkhgnsedtedrPMFSHLVswekgsgrntYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCRKgkegtdtviippaellrfsHSVPCFKLTGEEREGVLKGFFEidpaslplNLEEIAVPEILkeetgathsnyslgsfdrEKSQAGYEGCTSMHQDELKETCLEPANDRSVEDIEHRsatsasnadaieipDPEFYNFDAEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSLPNNAICWHDERMPICCGRFKIKRGKLKGYPSTVSFShmvsaepaskkneytiLPRNGEIWALYKNWNAEIKCSDLENCEYDIVEIIEAQNLHIEVLFLERVAGFNSVFKPQKESASAVMKISAEELLRFSHQIPAFKLTEERDGSLRGCWELDPAALPVHYFLL
MDCNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASVRRPVAPYQPPQKPTYSNVGTRNNFGSTFTGSNFQHQRPQQPAQPGINGDPTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGEQSFPTATNLGQPAFFQKKDVPSQGACKLEQVFKGNLAADNSKTACPQKTGCTSDFGKEKMNGKRGRKQVVessescstesssDFEVDVPVDESGDFNGGENFGHNKYQNPRRSSRRKQQVSYKENLSDDDDLVSHPKRFKGNGSSCATEKENEDALREEAAKLDNQSGSGAAVREEQKESKKKDSAHFQESLSNVKTDTEMAIGKETAEENGCVNISVAHGDKKMSEATTDSAVDSTSGSAVNPELFEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPSGFKLKITWLEPDSDADDEKEKEWVNNGLPFSCGKFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEEREGVLKGFFEIDPASLPLNLEEIAVPEILKEETGATHSNYSLGSFDREKSQAGYEGCTSMHQDELKETCLEPANDRSVEDIEHRSATSASNADAIEIPDPEFYNFDAEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSLPNNAICWHDERMPICCGRFKIKRGKLKGYPSTVSFSHMVSAEPASKKNEYTILPRNGEIWALYKNWNAEIKCSDLENCEYDIVEIIEAQNLHIEVLFLERVAGFNSVFKPQKESASAVMKISAEELLRFSHQIPAFKLTEERDGSLRGCWELDPAALPVHYFLL
***********************FAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLL****************************************************************DPTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGEQSFPTATNLGQPAFF*********ACKLEQVFK***********************************************************************************************************************************************************************************************************************************RKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPSGFKLKITWLE************WVNNGLPFSCGK**************FSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEEREGVLKGFFEIDPASLPLNLEEIAVPEILK***********************************************************************FYNFD*****DRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSLPNNAICWHDERMPICCGRFKIKRGKLKGYPSTVSFSHM**********EYTILPRNGEIWALYKNWNAEIKCSDLENCEYDIVEIIEAQNLHIEVLFLERVAGFNSVFKP******AVMKISAEELLRFSHQIPAFKLTEERDGSLRGCWELDPAALPVHYFL*
***NKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLH*****************************N****************************TFWTMCPFCTVRYQYYRNVINKSIICQACNK***********************************************************************************************************************************KENL*********************************************************************************************************************PELFEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPSGFKLKITWLEPDSDAD******WVNNGLPFSCGKFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEEREGVLKGFFEIDPASLPLNLEEIAVPEILK*****************************************************************EIPDPEFYNFDAEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSL**********RMPICCGRFKIKRGKLKGYPSTVSFSHMVSAEPASKKNEYTILPRNGEIWALYKNWNAEIKCSDLENCEYDIVEIIEAQNLHIEVLFLERVAGFNSVFKPQKESASAVMKISAEELLRFSHQIPAFKLTEERDGSLRGCWELDPAALPVHYFLL
********IRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASVRRPVAPYQPPQKPTYSNVGTRNNFGSTFTGSN***********PGINGDPTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGEQSFPTATNLGQPAFFQKKDVPSQGACKLEQVFKGNLAADNSKTACPQKTGCTSDFGKE***************************VDVPVDESGDFNGGENFGHNKY*********************DDDLVSHPKRFK*************************************************ESLSNVKTDTEMAIGKETAEENGCVNISVAHGD*****************SAVNPELFEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPSGFKLKITWLEPD*********EWVNNGLPFSCGKFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEEREGVLKGFFEIDPASLPLNLEEIAVPEILKEETGATHSNYSLGSFDREKSQAGYEGCTSMHQDELKETCLEPANDR**************NADAIEIPDPEFYNFDAEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSLPNNAICWHDERMPICCGRFKIKRGKLKGYPSTVSFSHMVSAEPASKKNEYTILPRNGEIWALYKNWNAEIKCSDLENCEYDIVEIIEAQNLHIEVLFLERVAGFNSVFKP********MKISAEELLRFSHQIPAFKLTEERDGSLRGCWELDPAALPVHYFLL
*DC**DE*IRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKA**************************************************DPTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGEQS*************************************************************************************************************************************************************************************************************************************************PELFEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPSGFKLKITWLEPDSDADDEKEKEWVNNGLPFSCGKFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEEREGVLKGFFEIDPASLPLNLEEIAVP******************************************************************DAIEIPDPEFYNFDAEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSLPNNAICWHDERMPICCGRFKIKRGKLKGYPSTVSFSHMVSAEPASKKNEYTILPRNGEIWALYKNWNAEIKCSDLENCEYDIVEIIEAQNLHIEVLFLERVAGFNSVFKPQKESASAVMKISAEELLRFSHQIPAFKLTEERDGSLRGCWELDPAALPVHYFLL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDCNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASVRRPVAPYQPPQKPTYSNVGTRNNFGSTFTGSNFQHQRPQQPAQPGINGDPTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGEQSFPTATNLGQPAFFQKKDVPSQGACKLEQVFKGNLAADNSKTACPQKTGCTSDFGKEKMNGKRGRKQVVESSESCSTESSSDFEVDVPVDESGDFNGGENFGHNKYQNPRRSSRRKQQVSYKENLSDDDDLVSHPKRFKGNGSSxxxxxxxxxxxxxxxxxxxxxSGSGAAVREEQKESKKKDSAHFQESLSNVKTDTEMAIGKETAEENGCVNISVAHGDKKMSEATTDSAVDSTSGSAVNPELFEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPSGFKLKITWLEPDSDADDEKEKEWVNNGLPFSCGKFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEEREGVLKGFFEIDPASLPLNLEEIAVPEILKEETGATHSNYSLGSFDREKSQAGYEGCTSMHQDELKETCLEPANDRSVEDIEHRSATSASNADAIEIPDPEFYNFDAEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSLPNNAICWHDERMPICCGRFKIKRGKLKGYPSTVSFSHMVSAEPASKKNEYTILPRNGEIWALYKNWNAEIKCSDLENCEYDIVEIIEAQNLHIEVLFLERVAGFNSVFKPQKESASAVMKISAEELLRFSHQIPAFKLTEERDGSLRGCWELDPAALPVHYFLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1000 2.2.26 [Sep-21-2011]
Q9QYI4376 DnaJ homolog subfamily B yes no 0.128 0.340 0.325 4e-11
O89114348 DnaJ homolog subfamily B no no 0.062 0.178 0.596 1e-10
Q9NXW2375 DnaJ homolog subfamily B yes no 0.128 0.341 0.309 2e-10
Q58DR2370 DnaJ homolog subfamily B yes no 0.128 0.345 0.315 3e-10
Q5BIP8348 DnaJ homolog subfamily B no no 0.062 0.178 0.580 4e-10
O75953348 DnaJ homolog subfamily B no no 0.062 0.178 0.580 4e-10
A6Q486373 Chaperone protein DnaJ OS yes no 0.071 0.190 0.486 4e-10
Q9FH28354 Chaperone protein dnaJ 49 no no 0.127 0.358 0.316 7e-10
A8EUC7372 Chaperone protein DnaJ OS yes no 0.069 0.185 0.472 9e-10
P48353224 Protein HLJ1 OS=Saccharom yes no 0.078 0.348 0.388 9e-10
>sp|Q9QYI4|DJB12_MOUSE DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=2 Back     alignment and function desciption
 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 76/172 (44%), Gaps = 44/172 (25%)

Query: 1   MDCNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQD------LENISQMIMVCDVH 54
           M+ NKDEA R   IA   +QSN    A +F  KAQ LY        +E+++Q       H
Sbjct: 1   MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVSALIESLNQKPQSTGDH 60

Query: 55  C-------------------SAENKLFGNE-------------------MDWYGLLQIEQ 76
                               SA  +  G E                    D+Y +L + +
Sbjct: 61  PQPTDTTHTTTKKAGGTETPSANGEAGGGESAKGYTSEQVAAVKRVKQCKDYYEILGVSR 120

Query: 77  TANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHD 128
           +A++  +KK YRK AL+ HPDKN  PGA  AFK IG A  VL + +KR  +D
Sbjct: 121 SASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 172

Mus musculus (taxid: 10090)
>sp|O89114|DNJB5_MOUSE DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1 Back     alignment and function description
>sp|Q9NXW2|DJB12_HUMAN DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1 SV=4 Back     alignment and function description
>sp|Q58DR2|DJB12_BOVIN DnaJ homolog subfamily B member 12 OS=Bos taurus GN=DNAJB12 PE=2 SV=1 Back     alignment and function description
>sp|Q5BIP8|DNJB5_BOVIN DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1 Back     alignment and function description
>sp|O75953|DNJB5_HUMAN DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=1 SV=1 Back     alignment and function description
>sp|A6Q486|DNAJ_NITSB Chaperone protein DnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|Q9FH28|DNJ49_ARATH Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2 Back     alignment and function description
>sp|A8EUC7|DNAJ_ARCB4 Chaperone protein DnaJ OS=Arcobacter butzleri (strain RM4018) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|P48353|HLJ1_YEAST Protein HLJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HLJ1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1000
2254324121044 PREDICTED: uncharacterized protein LOC10 0.985 0.943 0.557 0.0
224107425866 predicted protein [Populus trichocarpa] 0.862 0.995 0.546 0.0
356546484968 PREDICTED: uncharacterized protein LOC10 0.95 0.981 0.513 0.0
356557837968 PREDICTED: uncharacterized protein LOC10 0.955 0.986 0.513 0.0
356521913958 PREDICTED: uncharacterized protein LOC10 0.948 0.989 0.492 0.0
356564570960 PREDICTED: uncharacterized protein LOC10 0.95 0.989 0.481 0.0
449454608940 PREDICTED: uncharacterized protein LOC10 0.923 0.981 0.493 0.0
449507682938 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.921 0.981 0.490 0.0
357447483946 DnaJ protein-like protein [Medicago trun 0.918 0.970 0.478 0.0
357478569973 DnaJ homolog subfamily B member [Medicag 0.93 0.955 0.484 0.0
>gi|225432412|ref|XP_002276957.1| PREDICTED: uncharacterized protein LOC100244334 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1138 bits (2943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1054 (55%), Positives = 728/1054 (69%), Gaps = 69/1054 (6%)

Query: 1    MDCNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENK 60
            MDCNK+EA+R KG+AE KMQ+ DF GARK A+KAQ LY DLENISQM+ VCDVHCSAE+K
Sbjct: 1    MDCNKEEAVRAKGLAEKKMQNKDFVGARKIAIKAQQLYPDLENISQMLTVCDVHCSAEHK 60

Query: 61   LFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLD 120
            L GNE+DWYG+LQIEQTA+EA+IKKQYRK AL LHPDKNKF GAE AFKLIGEAQRVLLD
Sbjct: 61   LIGNEIDWYGVLQIEQTADEASIKKQYRKLALLLHPDKNKFSGAEAAFKLIGEAQRVLLD 120

Query: 121  KDKRSLHDMKRKASVRRPVAPYQPPQKPTYSNVG--------TRNNFGSTFTGSNFQHQR 172
            ++KRSLHDM+RKA ++   A    P+     N G        + NN  +T+ G N QHQR
Sbjct: 121  REKRSLHDMRRKACMKPKAAHQTQPRANKNVNFGRQSGVQNSSMNNAATTYAGVNAQHQR 180

Query: 173  PQQPAQPGI-NGDPTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGEQSFPTA 231
            PQQ A  G  NG  TFWT+CPFC VRYQYYR ++N+S+ CQ+C K F+AY+   QS    
Sbjct: 181  PQQQASSGSSNGRLTFWTVCPFCAVRYQYYREIVNRSLRCQSCGKTFIAYDMNTQSTAQG 240

Query: 232  TNLGQPAFFQKKDVPSQGACKL-----------EQVFKGNLAADNSKTACPQKTGCTSDF 280
            T+  QPAF Q+K VP+Q A K+              F+G    + S+     KTGCTS+ 
Sbjct: 241  TSWSQPAFPQQKPVPNQDAHKVGPQSTFQKPASNVGFQGKFGGEKSRMESFSKTGCTSEI 300

Query: 281  G---------------------------KEKMNGKRGRKQVVESSESCSTESSSDFEVDV 313
            G                             K+NGK+ +KQ VESSESC T SSSD E ++
Sbjct: 301  GGGSKTNEKYVNVDMKVDKGGGSNEAKSPGKVNGKKRKKQEVESSESCDTGSSSDTE-EL 359

Query: 314  PVDESGDFNGGENFGHNKYQNPRRSSRRKQQVSYKENLSDDDDLVSHPKRFKGNGSSCAT 373
             ++E  D    +N+G    Q PRRS+R KQ VSY EN+SDDD+L+S  KR KGNGSS A 
Sbjct: 360  VMEEDDDLPAKQNYGRYAEQYPRRSNRHKQHVSYSENVSDDDNLMSPRKRAKGNGSSSAN 419

Query: 374  EKENED-ALREEAAKLDNQSGSGAAVREEQKESKKKDSAHFQESLSNVKTDTEMAIGKET 432
            E+++ED +L+E   K++ Q+G+ A V E++K+S +K +  F ESL N   +T+   GKET
Sbjct: 420  EEKSEDVSLKENICKINKQAGAAADVEEDKKDSGQKGTGSFDESLPNGTKETKKDNGKET 479

Query: 433  AEENGCVNISVAHGDKKMSEATTDSAVDSTSGSAVNPELFEYPDPDFNDFEKDRKEECFL 492
              ++ C         K+  EA  D    ST  +A +PE +EYPDPDFNDF+KDRKEECF 
Sbjct: 480  VTDDAC---------KRSPEADNDFPSSSTPKAAKDPEFYEYPDPDFNDFDKDRKEECFT 530

Query: 493  VGQVWAIYDTVDAMPRFYARIRKVCPSGFKLKITWLEPDSDADDEKEKEWVNNGLPFSCG 552
            VGQ WA+YDTVDAMPRFYA+IRKV  +GFKL+ITWLEPD    DE E EWV+  LP+SCG
Sbjct: 531  VGQTWAVYDTVDAMPRFYAQIRKVFSTGFKLRITWLEPD--PSDEAEIEWVSEDLPYSCG 588

Query: 553  KFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRK 612
             FK G SE+T DR MFSHLVSWEK   R+ YKI+PRKGE W LFK WD  W SD +++RK
Sbjct: 589  NFKRGKSENTGDRLMFSHLVSWEKDRSRDAYKIHPRKGETWALFKNWDIKWSSDPESHRK 648

Query: 613  YDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPC 672
            Y++E+VE+LS+Y E VGI V YL+K+KGF  +FCR  K+G D+++IPP+ELLRFSH +P 
Sbjct: 649  YEFEYVEVLSEYDENVGISVVYLSKLKGFACLFCRILKQGIDSILIPPSELLRFSHRIPS 708

Query: 673  FKLTGEEREGVLKGFFEIDPASLPLNLEEIAVPE-ILKEETGATHSNYSLGSFDRE--KS 729
            FKLTGEER+ V +G  E+DPASLP N+EEI VPE  LK E    +SN S+     E  K 
Sbjct: 709  FKLTGEERQDVPRGSLELDPASLPANVEEIPVPEEDLKMEASNANSNGSVSKSTEENVKP 768

Query: 730  QAGYEGCTSMHQDELKETCLEPANDRSVEDIEHRSA----TSASNADAIEIPDPEFYNFD 785
              G EG +SM Q +  ET L+P N    + ++  S+      AS  +A EIP+P+F NFD
Sbjct: 769  MTGSEGGSSMFQVD-NETHLDPENGNPDDILKDHSSDPASVVASTPEAYEIPEPDFCNFD 827

Query: 786  AEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSLPNNAICWHD 845
            AEKS ++ QVGQIW+LYSDEDGLPKYY QI K+ +DPDFKL++ WLE+CS PN+ I W D
Sbjct: 828  AEKSPEKFQVGQIWALYSDEDGLPKYYCQIKKIDSDPDFKLHVTWLEACSPPNDMIQWLD 887

Query: 846  ERMPICCGRFKIKRGKLKGYPSTVSFSHMVSAEPASKKNEYTILPRNGEIWALYKNWNAE 905
            ++M   CGRFKIK+GK + Y S  SFSH + AE   KKNEY I PR GE+WALYKNWNAE
Sbjct: 888  KKMLTTCGRFKIKKGKPQTYTSAASFSHQLRAELTDKKNEYAIFPRKGEVWALYKNWNAE 947

Query: 906  IKCSDLENCEYDIVEIIEAQNLHIEVLFLERVAGFNSVFKPQKESASAV-MKISAEELLR 964
            + CSDLENCEYDIVE+++  +L IEVL LERV G+N+VFK Q E      MKI   ELLR
Sbjct: 948  MTCSDLENCEYDIVEVLDENDLWIEVLLLERVEGYNAVFKSQVEGRLPFSMKIPRVELLR 1007

Query: 965  FSHQIPAFKLTEERDGSLRGCWELDPAALPVHYF 998
            FSHQIPAF LTEERDG+L+G  ELDPA+LP+  F
Sbjct: 1008 FSHQIPAFHLTEERDGALKGNLELDPASLPILLF 1041

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107425|ref|XP_002314476.1| predicted protein [Populus trichocarpa] gi|222863516|gb|EEF00647.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356546484|ref|XP_003541656.1| PREDICTED: uncharacterized protein LOC100779228 [Glycine max] Back     alignment and taxonomy information
>gi|356557837|ref|XP_003547217.1| PREDICTED: uncharacterized protein LOC100817232 [Glycine max] Back     alignment and taxonomy information
>gi|356521913|ref|XP_003529595.1| PREDICTED: uncharacterized protein LOC100795200 [Glycine max] Back     alignment and taxonomy information
>gi|356564570|ref|XP_003550525.1| PREDICTED: uncharacterized protein LOC100789112 [Glycine max] Back     alignment and taxonomy information
>gi|449454608|ref|XP_004145046.1| PREDICTED: uncharacterized protein LOC101217756 [Cucumis sativus] gi|449473517|ref|XP_004153904.1| PREDICTED: uncharacterized protein LOC101214527 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449507682|ref|XP_004163100.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229241 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357447483|ref|XP_003594017.1| DnaJ protein-like protein [Medicago truncatula] gi|355483065|gb|AES64268.1| DnaJ protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357478569|ref|XP_003609570.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|355510625|gb|AES91767.1| DnaJ homolog subfamily B member [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1000
TAIR|locus:2180024884 AT5G18750 [Arabidopsis thalian 0.396 0.447 0.410 1.6e-129
TAIR|locus:2181261 1104 AT5G27240 [Arabidopsis thalian 0.351 0.317 0.348 1.5e-120
TAIR|locus:2081046673 AT3G06340 [Arabidopsis thalian 0.417 0.619 0.429 9.5e-120
TAIR|locus:2114880 1165 AT3G04980 [Arabidopsis thalian 0.479 0.411 0.284 9.5e-99
TAIR|locus:2180069528 AT5G18730 "AT5G18730" [Arabido 0.273 0.517 0.463 1.4e-84
TAIR|locus:2040110656 AT2G25560 [Arabidopsis thalian 0.221 0.336 0.393 1e-74
TAIR|locus:2163786726 AT5G53150 [Arabidopsis thalian 0.254 0.349 0.404 4.6e-73
TAIR|locus:2051244706 AT2G05230 [Arabidopsis thalian 0.316 0.447 0.326 1.3e-70
TAIR|locus:2051274706 AT2G05250 [Arabidopsis thalian 0.316 0.447 0.326 1.3e-70
TAIR|locus:2180014430 AT5G18740 "AT5G18740" [Arabido 0.299 0.695 0.429 1.6e-56
TAIR|locus:2180024 AT5G18750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 695 (249.7 bits), Expect = 1.6e-129, Sum P(2) = 1.6e-129
 Identities = 174/424 (41%), Positives = 240/424 (56%)

Query:     4 NKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENI-SQMIMVCDVHCSAENKLF 62
             NKDEA+R K +AE  M  +DF  AR+ A+KAQ +   LE++ ++MIMVCDVHC+A  K  
Sbjct:     3 NKDEALRAKDLAEDWMSKSDFTTARRIAIKAQKMDATLESVVARMIMVCDVHCAALEKS- 61

Query:    63 GNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKD 122
             G+E DWY +LQ+EQTA+E TIKKQY+K AL LHPDKNK PGAE+AFK IGEAQRVLLDKD
Sbjct:    62 GDETDWYKILQVEQTADENTIKKQYKKLALHLHPDKNKLPGAESAFKTIGEAQRVLLDKD 121

Query:   123 KRSLHDMKRKASVRRPV-AP-----YQPPQKPTYSNVGTRNNFGSTFTGSNFQHQRPQQP 176
             KR  HDM+RK   RRP  AP     +QPPQ+   +   T+  F +    +  + +  ++P
Sbjct:   122 KRRFHDMRRKPVFRRPAPAPAPAPSFQPPQQAPTTPFFTQRGFQTNVNVARKRPENQKKP 181

Query:   177 -AQP-GINGDPTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGEQSFPTATNL 234
              AQP G +G  +F T C FC  +Y+Y R +IN  + C  C K +VA++   Q  P     
Sbjct:   182 QAQPTGFDGLASFTTSCAFCHRKYEYQRKLINTLMTCLNCGKQYVAFQETFQP-PVQPTF 240

Query:   235 GQPAFFQKKDVPSQGACK-LEQVFKGNLAADNSKTACPQKTGCTSDFGKEKMNGKRGRKQ 293
                +FFQ+  VP+Q A K +E+  +    +  SK     K+   S    E +NGKR RK+
Sbjct:   241 ---SFFQQSKVPTQEAGKAVEKQPESCAKSFFSKEGSRAKS---SGVSAENINGKRKRKK 294

Query:   294 VVXXXXXXXXXXXXDFEVDVPVDESGDFNGGENFGHNKYQNPRRSSRRKQQVSYKENLSD 353
             VV            D   +VP        GG++ G +  Q+ RRS R KQQVSYKE+  +
Sbjct:   295 VVESSDSSCSESSIDCN-EVPA-------GGQDSGSSGAQHSRRSVRSKQQVSYKEDKEE 346

Query:   354 DDDLVSHPK-RFKGNGSSCATEKENEDALREEAAKLDNQSGSGAAVREEQKESKKKDSAH 412
             D +       R K +     TE       R + +K    S SG+A  + + +    D ++
Sbjct:   347 DAESAEESDFRKKSHEDQPFTETLPNGLNRTKKSKAAKNSSSGSA-SDAEIQCTDPDFSN 405

Query:   413 FQES 416
             F++S
Sbjct:   406 FEKS 409
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2181261 AT5G27240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081046 AT3G06340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114880 AT3G04980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180069 AT5G18730 "AT5G18730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040110 AT2G25560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163786 AT5G53150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051244 AT2G05230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051274 AT2G05250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180014 AT5G18740 "AT5G18740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019838001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (1044 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1000
pfam11926218 pfam11926, DUF3444, Domain of unknown function (DU 1e-103
pfam11926218 pfam11926, DUF3444, Domain of unknown function (DU 4e-79
pfam0022663 pfam00226, DnaJ, DnaJ domain 1e-19
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 9e-17
cd0625755 cd06257, DnaJ, DnaJ domain or J-domain 1e-15
smart0027160 smart00271, DnaJ, DnaJ molecular chaperone homolog 1e-15
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 2e-15
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 3e-14
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 8e-14
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 2e-13
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 3e-13
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 3e-13
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 2e-12
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 2e-12
PRK14276380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 7e-12
PRK10266306 PRK10266, PRK10266, curved DNA-binding protein Cbp 3e-11
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 4e-11
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 5e-11
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 6e-11
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 7e-11
PRK14288369 PRK14288, PRK14288, chaperone protein DnaJ; Provis 2e-10
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 2e-10
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 2e-10
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 3e-10
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 4e-10
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 4e-10
COG2214237 COG2214, CbpA, DnaJ-class molecular chaperone [Pos 5e-10
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 9e-10
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 2e-09
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 5e-09
TIGR03835871 TIGR03835, termin_org_DnaJ, terminal organelle ass 4e-08
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 9e-08
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 1e-07
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 2e-07
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 5e-07
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 9e-07
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 1e-06
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 1e-05
>gnl|CDD|221319 pfam11926, DUF3444, Domain of unknown function (DUF3444) Back     alignment and domain information 
 Score =  320 bits (821), Expect = e-103
 Identities = 120/215 (55%), Positives = 148/215 (68%), Gaps = 3/215 (1%)

Query: 468 NPELFEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPSG-FKLKIT 526
           +P   + PDPDF+DF+KDR E  F VGQ+WA+YD  D MPR+YARI+KV     FKL+IT
Sbjct: 6   SPNEIDVPDPDFHDFDKDRSESSFAVGQIWALYDDDDGMPRYYARIKKVLSVPPFKLRIT 65

Query: 527 WLEPDSDADDEKEKEWVNNGLPFSCGKFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIY 586
           WLEP  D   E+E +WV+ GLP SCGKFK G +E+ E   MFSH V  EK   R  Y+IY
Sbjct: 66  WLEPKPD--SEEEIDWVDEGLPVSCGKFKLGKTEEIESVNMFSHQVVPEKKGRRGEYEIY 123

Query: 587 PRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDYAEGVGICVAYLAKVKGFVSVFC 646
           PRKGE+W L+K W  +W +D    + Y+YE VE+LSDY +  GI VA L KV+GFVSVF 
Sbjct: 124 PRKGEIWALYKNWSPDWNADTPDKKTYEYEIVEVLSDYTDEAGISVAPLVKVEGFVSVFK 183

Query: 647 RKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEERE 681
           R  + G  T+ IP  E+LRFSH VP F+LTGEE E
Sbjct: 184 RDLQGGIATITIPKEEMLRFSHQVPSFRLTGEEGE 218

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 210 amino acids in length. This domain is found associated with pfam00226. This domain has two conserved sequence motifs: FSH and FSH. Length = 218
>gnl|CDD|221319 pfam11926, DUF3444, Domain of unknown function (DUF3444) Back     alignment and domain information
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain Back     alignment and domain information
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1000
PF11926217 DUF3444: Domain of unknown function (DUF3444); Int 100.0
PF11926217 DUF3444: Domain of unknown function (DUF3444); Int 100.0
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 99.79
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.74
PRK14288369 chaperone protein DnaJ; Provisional 99.64
PRK14296372 chaperone protein DnaJ; Provisional 99.64
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 99.62
PRK14279392 chaperone protein DnaJ; Provisional 99.58
PRK14286372 chaperone protein DnaJ; Provisional 99.57
PRK14287371 chaperone protein DnaJ; Provisional 99.57
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.57
PRK14276380 chaperone protein DnaJ; Provisional 99.57
PRK14298377 chaperone protein DnaJ; Provisional 99.56
PRK14283378 chaperone protein DnaJ; Provisional 99.56
PRK14299291 chaperone protein DnaJ; Provisional 99.56
PRK14291382 chaperone protein DnaJ; Provisional 99.55
PRK14278378 chaperone protein DnaJ; Provisional 99.54
PTZ00037421 DnaJ_C chaperone protein; Provisional 99.54
PRK14280376 chaperone protein DnaJ; Provisional 99.54
PRK14282369 chaperone protein DnaJ; Provisional 99.53
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.53
PRK14285365 chaperone protein DnaJ; Provisional 99.53
PRK14277386 chaperone protein DnaJ; Provisional 99.53
KOG0716279 consensus Molecular chaperone (DnaJ superfamily) [ 99.53
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 99.52
PRK14294366 chaperone protein DnaJ; Provisional 99.52
PRK14284391 chaperone protein DnaJ; Provisional 99.52
PRK14295389 chaperone protein DnaJ; Provisional 99.51
PRK14301373 chaperone protein DnaJ; Provisional 99.51
PRK14297380 chaperone protein DnaJ; Provisional 99.51
PRK10767371 chaperone protein DnaJ; Provisional 99.49
PRK14281397 chaperone protein DnaJ; Provisional 99.49
KOG0691296 consensus Molecular chaperone (DnaJ superfamily) [ 99.49
KOG0718546 consensus Molecular chaperone (DnaJ superfamily) [ 99.48
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 99.48
PRK14300372 chaperone protein DnaJ; Provisional 99.47
KOG0717508 consensus Molecular chaperone (DnaJ superfamily) [ 99.47
PRK14292371 chaperone protein DnaJ; Provisional 99.47
PRK14293374 chaperone protein DnaJ; Provisional 99.46
PTZ003411136 Ring-infected erythrocyte surface antigen; Provisi 99.46
PRK14290365 chaperone protein DnaJ; Provisional 99.45
PRK10266306 curved DNA-binding protein CbpA; Provisional 99.45
PRK14289386 chaperone protein DnaJ; Provisional 99.44
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.44
KOG0720490 consensus Molecular chaperone (DnaJ superfamily) [ 99.43
KOG0719264 consensus Molecular chaperone (DnaJ superfamily) [ 99.4
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.38
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.34
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 99.3
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 99.28
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 99.28
PHA03102153 Small T antigen; Reviewed 99.21
PRK05014171 hscB co-chaperone HscB; Provisional 99.12
PRK01356166 hscB co-chaperone HscB; Provisional 99.1
PRK00294173 hscB co-chaperone HscB; Provisional 99.02
PRK03578176 hscB co-chaperone HscB; Provisional 99.0
KOG0722329 consensus Molecular chaperone (DnaJ superfamily) [ 99.0
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 98.97
PTZ00100116 DnaJ chaperone protein; Provisional 98.82
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 98.74
PHA02624647 large T antigen; Provisional 98.74
KOG1150250 consensus Predicted molecular chaperone (DnaJ supe 98.64
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 98.55
PRK01773173 hscB co-chaperone HscB; Provisional 98.52
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 98.46
COG5269379 ZUO1 Ribosome-associated chaperone zuotin [Transla 98.33
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 97.55
KOG0568342 consensus Molecular chaperone (DnaJ superfamily) [ 97.47
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 96.66
KOG0431453 consensus Auxilin-like protein and related protein 94.87
KOG3192168 consensus Mitochondrial J-type chaperone [Posttran 94.79
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 94.69
TIGR0209838 MJ0042_CXXC MJ0042 family finger-like domain. This 93.71
PF1371937 zinc_ribbon_5: zinc-ribbon domain 91.49
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 90.14
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 90.06
PF1371736 zinc_ribbon_4: zinc-ribbon domain 89.7
PF0520755 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc 89.3
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 88.65
KOG292367 consensus Uncharacterized conserved protein [Funct 88.16
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 87.33
PF1342844 TPR_14: Tetratricopeptide repeat 87.05
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 85.36
COG521667 Uncharacterized conserved protein [Function unknow 81.3
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain Back     alignment and domain information 
Probab=100.00  E-value=2.9e-81  Score=656.54  Aligned_cols=214  Identities=57%  Similarity=1.010  Sum_probs=204.5

Q ss_pred             CCCCcccccCCCCcccccccccccccCCCCEEEEecCCCCCccceeEEEEecCC-CcEEEEEEecCCCCCChhhhhcccc
Q 001884          466 AVNPELFEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPS-GFKLKITWLEPDSDADDEKEKEWVN  544 (1000)
Q Consensus       466 ~~~~~~~~~pd~dF~dFd~~R~~~~F~~gQiWA~Yd~~DgmPR~Ya~I~kV~~~-~f~l~itwLe~~~~~~~e~~~~W~~  544 (1000)
                      ...+..++||||||||||++|++++|++|||||+||+.|||||+||||+||+.+ +|+|||+|||++|  ..+.+++|++
T Consensus         3 ~~~~~~~~~pd~dF~dF~~~R~~~~F~~gQIWAlYd~~D~mPR~Ya~I~kV~~~~~Fkl~i~wLe~~~--~~e~~~~w~~   80 (217)
T PF11926_consen    3 NSSPSSIDVPDPDFYDFDKDRSEEKFQVGQIWALYDDDDGMPRYYARIKKVDSSNPFKLHITWLEPCP--DSEEEIRWED   80 (217)
T ss_pred             CCCCCcccCCCcccccccCCchHHhCCCCCEEEEeeCCCCCeeeEEEEEEEecCCCeEEEEEEccccC--Ccccceeeee
Confidence            345788999999999999999999999999999999999999999999999854 7999999999999  8888999999


Q ss_pred             CCcceeeeeeEcCceeeccCCCceeEEEEeeecCCcceEEEeCCCCceeEEecCCCCCCCCCCCCCCceeeeEEEEeccc
Q 001884          545 NGLPFSCGKFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDY  624 (1000)
Q Consensus       545 ~~lpv~CG~F~~g~~~~~~~~~~FSH~v~~~~~~~~~~~~IyP~kGevWAlyknW~~~w~~~~~~~~~~~Y~~VEilsd~  624 (1000)
                      ++|||+||+|++|+++++.++++|||+|.+..++.|+.|+|||||||||||||||+++|+.+++++..|+|||||||+||
T Consensus        81 ~~~pvsCG~Fk~~~~~~~~~~~~FSH~v~~~~~~~~~~y~IyPrkGEvWAlYknW~~~w~~~~~~~~~~~YdiVEVl~d~  160 (217)
T PF11926_consen   81 EGLPVSCGTFKVGKTEEIDDPNMFSHQVVPWTSGKRNEYEIYPRKGEVWALYKNWSPDWSSSTDDERKYEYDIVEVLSDY  160 (217)
T ss_pred             cCCceEEEEEEeCCEEEeccCCcEEEEEEEeecCCCceEEEeCCcccEeEEecCCCCCCCcCcCcCcccceEEEEEeecC
Confidence            99999999999999999999999999997766677999999999999999999999999999999999999999999999


Q ss_pred             cCCcceEEEEeeeecCcccceeecccCCcceEEeCCCCccccccccCceeecccccC
Q 001884          625 AEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEERE  681 (1000)
Q Consensus       625 ~~~~gv~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~e~~rFSH~VPs~~ltg~E~~  681 (1000)
                      +++.||.|+||+||+||+|||+|...++..++.||++||+|||||||+|||||+|++
T Consensus       161 ~~~~gi~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~E~~RFSHqIPa~rltgee~e  217 (217)
T PF11926_consen  161 SEEAGIKVAPLVKVKGFKSVFKRAEEGGEAVFTIPKSELLRFSHQIPAFRLTGEEGE  217 (217)
T ss_pred             CccCcEEEEEEEEecCcEeeeeecCCCCcceEEEChHHcCeeeccCCCEEccCccCC
Confidence            999999999999999999999999998767999999999999999999999999974

This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] Back     alignment and domain information
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain Back     alignment and domain information
>PF13719 zinc_ribbon_5: zinc-ribbon domain Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13717 zinc_ribbon_4: zinc-ribbon domain Back     alignment and domain information
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG2923 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>COG5216 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1000
2ctp_A78 Solution Structure Of J-Domain From Human Dnaj Subf 1e-10
1hdj_A77 Human Hsp40 (Hdj-1), Nmr Length = 77 4e-09
2cug_A88 Solution Structure Of The J Domain Of The Pseudo Dn 8e-09
2dmx_A92 Solution Structure Of The J Domain Of Dnaj Homolog 4e-08
2ctr_A88 Solution Structure Of J-Domain From Human Dnaj Subf 4e-08
2ej7_A82 Solution Structure Of The Dnaj Domain Of The Human 3e-07
1bqz_A77 J-Domain (Residues 1-77) Of The Escherichia Coli N- 4e-07
2kqx_A73 Nmr Structure Of The J-Domain (Residues 2-72) In Th 5e-07
1bq0_A103 J-Domain (Residues 1-77) Of The Escherichia Coli N- 5e-07
1xbl_A107 Nmr Structure Of The J-Domain (Residues 2-76) In Th 5e-07
2och_A73 J-domain Of Dnj-12 From Caenorhabditis Elegans Leng 1e-06
2lgw_A99 Solution Structure Of The J Domain Of Hsj1a Length 1e-06
2lo1_A71 Nmr Structure Of The Protein Bc008182, A Dnaj-Like 1e-06
2ctw_A109 Solution Structure Of J-Domain From Mouse Dnaj Subf 3e-06
2o37_A92 J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S 9e-06
3lz8_A329 Structure Of A Putative Chaperone Dnaj From Klebsie 9e-06
3apo_A780 Crystal Structure Of Full-Length Erdj5 Length = 780 1e-05
3apq_A210 Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt 2e-05
2ys8_A90 Solution Structure Of The Dnaj-Like Domain From Hum 3e-05
2dn9_A79 Solution Structure Of J-Domain From The Dnaj Homolo 4e-05
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78 Back     alignment and structure 
Iteration: 1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 63  GNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKD 122
           G+  D+Y +L + + A++  +KK YR+ AL+ HPDKN  PGA  AFK IG A  VL + +
Sbjct: 4   GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 123 KRSLHD 128
           KR  +D
Sbjct: 64  KRKQYD 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77 Back     alignment and structure
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88 Back     alignment and structure
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92 Back     alignment and structure
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88 Back     alignment and structure
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82 Back     alignment and structure
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77 Back     alignment and structure
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73 Back     alignment and structure
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103 Back     alignment and structure
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107 Back     alignment and structure
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73 Back     alignment and structure
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99 Back     alignment and structure
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71 Back     alignment and structure
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109 Back     alignment and structure
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92 Back     alignment and structure
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329 Back     alignment and structure
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780 Back     alignment and structure
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210 Back     alignment and structure
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras- Associated Protein Rap1 Length = 90 Back     alignment and structure
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1000
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 6e-21
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 2e-18
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 9e-18
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 1e-17
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 4e-17
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 2e-16
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 4e-16
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 5e-16
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 5e-16
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 6e-16
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 1e-15
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 2e-15
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 2e-15
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 3e-15
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 8e-15
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 9e-15
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 1e-14
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 2e-14
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 3e-14
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 7e-13
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 8e-13
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-12
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 2e-12
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 4e-12
3apo_A780 DNAJ homolog subfamily C member 10; PDI family, th 5e-11
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 7e-09
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 8e-09
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 2e-08
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 8e-08
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 3e-07
2guz_A71 Mitochondrial import inner membrane translocase su 8e-07
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 4e-06
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 4e-05
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Back     alignment and structure
 Score = 87.1 bits (216), Expect = 6e-21
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 64  NEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDK 123
           N  D + +L ++  A+   + K YRK A+ LHPDK   PG+E AFK +  A+  LL   K
Sbjct: 25  NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK 84

Query: 124 RS 125
             
Sbjct: 85  SG 86
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1000
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 99.87
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.69
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.68
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.68
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.66
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.66
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.64
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.64
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 99.63
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.63
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 99.63
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.62
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 99.6
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 99.6
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 99.6
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 99.59
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.56
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.54
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.51
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 99.49
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 99.44
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 99.43
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 99.43
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 99.42
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 99.41
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 99.4
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 99.39
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 99.38
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.37
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 99.37
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 99.32
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.26
2guz_A71 Mitochondrial import inner membrane translocase su 99.24
3apo_A780 DNAJ homolog subfamily C member 10; PDI family, th 99.19
2guz_B65 Mitochondrial import inner membrane translocase su 98.07
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 96.22
2jr7_A89 DPH3 homolog; DESR1, CSL zinc finger, metal bindin 83.14
1yop_A83 KTI11P; zinc finger, metal binding protein; NMR {S 82.01
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 81.65
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 81.6
1wge_A83 Hypothetical protein 2610018L09RIK; diphthamide,CS 80.6
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
Probab=99.87  E-value=5.4e-23  Score=205.75  Aligned_cols=129  Identities=25%  Similarity=0.486  Sum_probs=101.0

Q ss_pred             ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChh-------HHHHHHHHHHHHHHcCCchhHHHHhhhcccccCC
Q 001884           65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPG-------AETAFKLIGEAQRVLLDKDKRSLHDMKRKASVRR  137 (1000)
Q Consensus        65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~-------A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~~~  137 (1000)
                      ..|||+||||+++|+.++||++||+|++++||||+....       |.+.|+.|++||++|+||.+|+.||..+.....+
T Consensus         9 ~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~~   88 (155)
T 2l6l_A            9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLR   88 (155)
T ss_dssp             CSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHHH
T ss_pred             CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhhcc
Confidence            579999999999999999999999999999999998542       6789999999999999999999999887543311


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCCcceEEeeeccc--ceeccCCCC
Q 001884          138 PVAPYQPPQKPTYSNVGTRNNFGSTFTGSNFQHQRPQQPAQPGINGDPTFWTMCPFCTVRYQYYRNVIN--KSIICQACN  215 (1000)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~TFWT~C~~C~~~Yey~r~~ln--~~L~C~nC~  215 (1000)
                      .....    . .          ...+..++...            ...+|||.|+ |++.|+|++..|+  ..+.|++|+
T Consensus        89 ~~~~~----~-~----------~~~~~~m~~~e------------~~~~f~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCS  140 (155)
T 2l6l_A           89 NVGPV----D-A----------QVYLEEMSWNE------------GDHSFYLSCR-CGGKYSVSKDEAEEVSLISCDTCS  140 (155)
T ss_dssp             TTCSS----S-E----------EEETTTSEEET------------TTTEEEEECS-SSCEEEEETTHHHHCCEEECSSSS
T ss_pred             ccccc----c-c----------eeeHHHhcccc------------CCcEEEEcCC-CCCeEEecHHHhCCCCEEECCCCc
Confidence            10000    0 0          01111111000            3468999995 9999999999999  899999999


Q ss_pred             CceEEE
Q 001884          216 KPFVAY  221 (1000)
Q Consensus       216 ~~FvA~  221 (1000)
                      +.|.++
T Consensus       141 l~~~v~  146 (155)
T 2l6l_A          141 LIIELL  146 (155)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            998764
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1000
d1fpoa176 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma 1e-10
d1wjza_94 a.2.3.1 (A:) CSL-type zinc finger-containing prote 7e-10
d1nz6a_98 a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T 1e-09
d1hdja_77 a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 1e-09
d1xbla_75 a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain 1e-08
d1fafa_79 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 2e-07
d1iura_88 a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human 6e-07
d1gh6a_114 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 0.001
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 56.2 bits (135), Expect = 1e-10
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 8/75 (10%)

Query: 66  MDWYGLLQIEQTAN--EATIKKQYRKFALQLHPDKNKFPGAET------AFKLIGEAQRV 117
           MD++ L  +          +  +++    Q HPDK                  I +A + 
Sbjct: 1   MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 118 LLDKDKRSLHDMKRK 132
           L     R+ + +   
Sbjct: 61  LRHPLMRAEYLLSLH 75
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 Back     information, alignment and structure
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1000
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.74
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.71
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.64
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.56
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 99.47
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 99.42
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 99.35
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.3
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 86.69
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 86.04
d1wgea170 DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus 84.68
d1ywsa182 Diphthamide biosynthesis protein 3, DPH3 {Baker's 83.34
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 81.73
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 80.46
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.5e-18  Score=151.76  Aligned_cols=71  Identities=39%  Similarity=0.611  Sum_probs=66.3

Q ss_pred             ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001884           65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF-PGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV  135 (1000)
Q Consensus        65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~  135 (1000)
                      ..|||+||||+++|+.++||++||+|++++|||+++. +.+++.|+.|++||+||+||.+|..||++|..++
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   73 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcccc
Confidence            4799999999999999999999999999999999984 6788899999999999999999999999987655
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure