Citrus Sinensis ID: 001890

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000

MGVMSRRVLPVCGNLCFFCPSMRARSRQPVKRYKKMLADIFPRNQDAEPNDRKIGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMPSLLSPRSEQNKETSDAVSGALPVGASQKVRSASFSFQDEGKEKEEFLNGGLSAEERKTSDVDVKQCTYQSYSFKRAVTDGKMLTSFRLSSHQLSLLLSSIWVQATSTENSPANFEAMAHTYNIALLFTRSKRSSHVALIRCFQLAFSLRRISLDHEGGLRPSRRRSLFTLASYMLIFSARAGNLPELIPLVKASVTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSVNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALVTGKQQKMSVLQSFKTQQEVKALVVSSGYNQNDPPLPIMEVVVSEGNLRLPSIERVRTKDQLAICSQEYGQYSFRLPPSSPYDKFLKAAGC

cccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHcccHHHHcccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHcccc

cccEEEEEccccccccEcccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEEcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHccccHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccEEEEEEEEEHEEccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHEccccccccccccccccccccccccccccccccHHHHHHHHHcHcHHcccccccccHcccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccEEEHHccEEEEEcccccccccccccHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccc

mgvmsrrvlpvcgnlcffcpsmrarsrqpVKRYKKMLADifprnqdaepndrkigklceyasknplripkiTTLLEQRCYKdlrnenfgSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTlvnfidsqtdgtymfNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMgeqshmsmdFDKIISVTLENFVdlqmkpangkegrqhsqSEDQWVQGlqneedndssfpdmskkVSSLkdsminpgpdptmdtskspsywsrVCLDNMARLAKETTTVRRVLEPLFQifdaenhwstetGVACSVLLYLQSLLEESGENSHLLLCNLVKhldhksvakqplaqTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNsvelsssgdgmaktNADLQYSLENCISWLskkvgdvgpILDVMAGVLENMSNNTVVARTTISAVHRTAQIistipnisyrnkaFPEALFHQLLLAmahpdhetrvgAHTVLSVVLmpsllsprseqnketsdavsgalpvgasqkvrsasfsfqdegkEKEEFlngglsaeerktsdvdvkqctyqsysfkravtdgkMLTSFRLSSHQLSLLLSSIWVQatstenspaNFEAMAHTYNIALLFTRSKRSSHVALIRCFQLAFSLRRISldhegglrpsrrrSLFTLASYMLIFSAragnlpeliPLVKAsvtektvdpYLELVEDIRLQAVCAdsckvktaygsqedEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLlgfspddayplggplfmetprpcsplarmefqafdevmplaaltdeealpepngsqsdrktslsvntldILSVNELLDSVLETARQvasypvvsttvpydqmksQCEALVTGKQQKMSVLQSFKTQQEVKALVVSsgynqndpplpIMEVVVSegnlrlpsiervrtkdQLAICSQEygqysfrlppsspydkflkaagc

mgvmsrrvlpvcgnlcffcpsmrarsrqpvKRYKKMLAdifprnqdaepndrkigklceyasknplripkitTLLEQRCYKDlrnenfgsvKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKpangkegrqhSQSEDQWVQGLQNeedndssfpDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMPSLLSPRSEQNKETSDAVSGALPVGASQKVRSasfsfqdegkeKEEFlngglsaeerktsdvdvkqctyqsysfkravtDGKMLTSFRLSSHQLSLLLSSIWVQATSTENSPANFEAMAHTYNIALLFTRSKRSSHVALIRCFQLAFSLRRIsldhegglrpsrrrSLFTLASYMLIFSARAGNLPELIPLVKASVTEKTVDPYLELVEDIRLQAVCADSCKVKTaygsqededAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEAlpepngsqsdrktslsvNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALVTGKQQKMSVLQSFKTQQEVKALVVSsgynqndpplPIMEVVVSEGNLRLPSIERVRTKDQLAICSQEygqysfrlppsspydkflkaagc

MGVMSRRVLPVCGNLCFFCPSMRARSRQPVKRYKKMLADIFPRNQDAEPNDRKIGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTvlsvvlmpsllsprsEQNKETSDAVSGALPVGASQKVRSASFSFQDEGKEKEEFLNGGLSAEERKTSDVDVKQCTYQSYSFKRAVTDGKMLTSFRlsshqlslllssIWVQATSTENSPANFEAMAHTYNIALLFTRSKRSSHVALIRCFQLAFSLRRISLDHEGGLRPSRRRSLFTLASYMLIFSARAGNLPELIPLVKASVTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSVNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALVTGKQQKMSVLQSFKTQQEVKALVVSSGYNQNDPPLPIMEVVVSEGNLRLPSIERVRTKDQLAICSQEYGQYSFRLPPSSPYDKFLKAAGC

******RVLPVCGNLCFFCPSMR*********YKKMLADIF************IGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDL****************************************************************YWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVE**********TNADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMP*************************************************************DVKQCTYQSYSFKRAVTDGKMLTSFRLSSHQLSLLLSSIWVQATSTENSPANFEAMAHTYNIALLFTRSKRSSHVALIRCFQLAFSLRRISLDHEGGLRPSRRRSLFTLASYMLIFSARAGNLPELIPLVKASVTEKTVDPYLELVEDIRLQAVCADSCKVKTAYG***********LAAIELDDRHLKETVISHFMTKFE************QLLLGFSPDDAYPLGGPLFMET***C*PLARMEFQAFDEVMP*************************VNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALVTG*******L**F****EVKALVVSSGYN****PLPIMEVVVSEGNLRLPSIERVRTKDQLAICSQEYGQYSFR****************

****SRRVLPVCGNLCFFCPSMRAR******RYKKMLADIFP**************LCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQ*******ALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMK**********************************************************SPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKH**************NIVDIATKLAQNAK****VAIIGTINDLIKHLRKCL*****************ADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSN******TTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMP***********************************************************************************TSFRLSSHQLSLLLSSIWVQAT**ENSPANFEAMAHTYNIALLFTRSKRSSHVALIRCFQLAFSLR**************RRSLFTLASYMLIFSARAGNLPELIPLVKASVTEKTVDPYLELVEDIRLQAVCA*SCK****YGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLF********************VMPLAALTDEEA**********************LSVNELLDSVLETARQVA**PVVSTTVPYDQMKSQCEALVTGKQQKMSVLQ******************************************************QEYGQYSFRLPPSSPYDKFLKAAGC

MGVMSRRVLPVCGNLCFFCPSMRARSRQPVKRYKKMLADIFPRNQDAEPNDRKIGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPA*************QWVQGL*******************LKDSMINPGP*********PSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMPSLLS***************ALPVGASQKVRSASFSFQDEGKEKEEFLNGGLSAEERKTSDVDVKQCTYQSYSFKRAVTDGKMLTSFRLSSHQLSLLLSSIWVQATSTENSPANFEAMAHTYNIALLFTRSKRSSHVALIRCFQLAFSLRRISLDHEGGLRPSRRRSLFTLASYMLIFSARAGNLPELIPLVKASVTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEA*************SLSVNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALVTGKQQKMSVLQSFKTQQEVKALVVSSGYNQNDPPLPIMEVVVSEGNLRLPSIERVRTKDQLAICSQEYGQYSFRLPPSSPYDKFLKAAGC

*GVMSRRVLPVCGNLCFFCPSMRARSRQPVKRYKKMLADIFPRNQDAEPNDRKIGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNE*********************************KSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMPSLLS*************************************************************************TDGKMLTSFRLSSHQLSLLLSSIWVQATSTENSPANFEAMAHTYNIALLFTRSKRSSHVALIRCFQLAFSLRRISLDHEGGLRPSRRRSLFTLASYMLIFSARAGNLPELIPLVKASVTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPL****FQAFDEVMPLAALTDEEALPEPNG*QSDRKTSLSVNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALVTGKQQKMSVLQSFKT*********************************************LAIC****GQYSFRLPPSSPYDKFLKAAGC

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1000	2.2.26 [Sep-21-2011]
Q09263		859	Protein EFR3 homolog OS=C	yes	no	0.33	0.384	0.232	2e-11
Q620W3		859	Protein EFR3 homolog OS=C	N/A	no	0.329	0.383	0.232	5e-11
Q5SPP5		816	Protein EFR3 homolog B OS	no	no	0.333	0.408	0.229	7e-11
Q6ZQ18		817	Protein EFR3 homolog B OS	yes	no	0.366	0.447	0.205	1e-09
Q9Y2G0		817	Protein EFR3 homolog B OS	yes	no	0.348	0.425	0.212	3e-09
Q6C8F7		850	Protein EFR3 OS=Yarrowia	yes	no	0.094	0.110	0.292	1e-07
Q8IGJ0		834	Protein EFR3 homolog cmp4	yes	no	0.441	0.528	0.214	2e-07
Q5BAD4		1156	Protein efr3 OS=Emericell	yes	no	0.08	0.069	0.312	2e-06
Q7SHX8		1125	Protein efr-3 OS=Neurospo	N/A	no	0.222	0.197	0.214	9e-06
Q6BLT4		888	Protein EFR3 OS=Debaryomy	yes	no	0.094	0.105	0.239	3e-05

>sp\|Q09263\|EFR3_CAEEL Protein EFR3 homolog OS=Caenorhabditis elegans GN=C32D5.3 PE=3 SV=1	Back alignment and function desciption

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 161/409 (39%), Gaps = 79/409 (19%)

Query: 32  RYKKMLADIFPRNQDAEPNDRKIGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSV 91
           RY++++  I+PR          + KL  YA  +P ++ +I   L  R  +DL  +    V
Sbjct: 13  RYRRLVDSIYPRAVTDGLLYSNMQKLTFYAISHPEKLERIGEYLVMRMVRDLSRQRPVQV 72

Query: 92  KVVVCIYKKFLSSCKEQ--MPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFID-SQT 148
           K+ V    + L +C     +P F+ + L +++ LLE +   +M+ L   + V F +  ++
Sbjct: 73  KIAVEAMDQLLQACHSSPSLPQFSENHLRMVQRLLE-SNNAKMEQLATDSFVTFSNIEES 131

Query: 149 DGTYMFNLEGLIPKLCQLAQE-----MGNDERALRLRSAGLQVLAYMV---------KFM 194
             +Y    +  I K  Q+         G+D R  R   AGL+ L  +V           +
Sbjct: 132 SPSYHRQYDFFIDKFSQMCHANPQAAYGDDFRLAR--CAGLRGLRGVVWKSVTDDLHPNI 189

Query: 195 GEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPD 254
            EQ HM    DKI+   L N                           LQ  +D+   F  
Sbjct: 190 WEQQHM----DKIVPSILFN---------------------------LQEPDDSGKGFS- 217

Query: 255 MSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFD 314
            S ++    ++  +      +D   +P   S  CL  +   A    ++R V+EP+ +  D
Sbjct: 218 -SSQIPKFDNTFADSTQSHRVDDEATPKVLSDRCLRELMGKAS-FGSLRAVIEPVLKHMD 275

Query: 315 AENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIA 374
               W+     A  V   +  +     +NS+ ++  L+ HLD    A          D +
Sbjct: 276 LHKRWTPPPSFAIHVFRAI--IYSIQSQNSYFVIQELINHLDSMCSA----------DAS 323

Query: 375 TKLAQNAKLLASVAIIGT---------INDLIKHLRKCLQNSVELSSSG 414
           T++     L + V+I GT          N L+KHLR     SV+   SG
Sbjct: 324 TRIGIATVLSSIVSIAGTSIGPLLLSIFNSLLKHLR----TSVDFERSG 368

Caenorhabditis elegans (taxid: 6239)

>sp\|Q620W3\|EFR3_CAEBR Protein EFR3 homolog OS=Caenorhabditis briggsae GN=CBG02625 PE=3 SV=1	Back alignment and function description

>sp\|Q5SPP5\|EFR3B_DANRE Protein EFR3 homolog B OS=Danio rerio GN=efr3b PE=3 SV=2	Back alignment and function description

>sp\|Q6ZQ18\|EFR3B_MOUSE Protein EFR3 homolog B OS=Mus musculus GN=Efr3b PE=1 SV=2	Back alignment and function description

>sp\|Q9Y2G0\|EFR3B_HUMAN Protein EFR3 homolog B OS=Homo sapiens GN=EFR3B PE=1 SV=2	Back alignment and function description

>sp\|Q6C8F7\|EFR3_YARLI Protein EFR3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=EFR3 PE=3 SV=1	Back alignment and function description

>sp\|Q8IGJ0\|EFR3_DROME Protein EFR3 homolog cmp44E OS=Drosophila melanogaster GN=stmA PE=2 SV=3	Back alignment and function description

>sp\|Q5BAD4\|EFR3_EMENI Protein efr3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=efr3 PE=3 SV=1	Back alignment and function description

>sp\|Q7SHX8\|EFR3_NEUCR Protein efr-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=efr-3 PE=3 SV=1	Back alignment and function description

>sp\|Q6BLT4\|EFR3_DEBHA Protein EFR3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=EFR3 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1000
225433864		1000	PREDICTED: uncharacterized protein LOC10	0.992	0.992	0.730	0.0
224093152		988	predicted protein [Populus trichocarpa]	0.987	0.998	0.721	0.0
255584652		988	conserved hypothetical protein [Ricinus	0.977	0.988	0.682	0.0
356557372		973	PREDICTED: uncharacterized protein LOC10	0.962	0.988	0.662	0.0
356547310		977	PREDICTED: uncharacterized protein LOC10	0.96	0.982	0.660	0.0
356541147		986	PREDICTED: uncharacterized protein LOC10	0.982	0.995	0.654	0.0
449446245		955	PREDICTED: uncharacterized protein LOC10	0.954	0.998	0.641	0.0
357454465		969	EFR3-like protein [Medicago truncatula]	0.967	0.997	0.646	0.0
356544523		1017	PREDICTED: uncharacterized protein LOC10	0.985	0.968	0.632	0.0
449523714		885	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.884	0.998	0.619	0.0

>gi\|225433864\|ref\|XP_002264735.1\| PREDICTED: uncharacterized protein LOC100264644 [Vitis vinifera] gi\|297743772\|emb\|CBI36655.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1472 bits (3812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 736/1008 (73%), Positives = 832/1008 (82%), Gaps = 16/1008 (1%)

Query: 1    MGVMSRRVLPVCGNLCFFCPSMRARSRQPVKRYKKMLADIFPRNQDAEPNDRKIGKLCEY 60
            MGVMSRRV+P CGNLCFFCPS+RARSRQPVKRYKK+LADIFPR+QDAEPN+RKIGKLCEY
Sbjct: 1    MGVMSRRVVPACGNLCFFCPSLRARSRQPVKRYKKLLADIFPRSQDAEPNERKIGKLCEY 60

Query: 61   ASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGII 120
            ASKN LRIPKIT  LEQRCYKDLRN +FGS KVV+CIY+K LSSCKEQMP +ASSLLG++
Sbjct: 61   ASKNALRIPKITDYLEQRCYKDLRNGHFGSAKVVLCIYRKLLSSCKEQMPFYASSLLGMV 120

Query: 121  RTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLR 180
            R LLEQTR +EM+ILGC TLV+FI+SQ DGTYMFNLEGLIPKLCQLAQE G DERAL LR
Sbjct: 121  RILLEQTRHDEMRILGCSTLVDFINSQMDGTYMFNLEGLIPKLCQLAQEPGEDERALSLR 180

Query: 181  SAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQ 240
            SAGLQ LA+MV FMGE SH+SMDFD IISVTLEN++D QMK     E + HSQ++DQWVQ
Sbjct: 181  SAGLQALAFMVWFMGEHSHISMDFDNIISVTLENYMDTQMKAETTDEDKHHSQNQDQWVQ 240

Query: 241  GLQNEEDNDSSFPDMSKKVSSLKDSM-INPGPDPTMDTSKSPSYWSRVCLDNMARLAKET 299
            G+   E+N SSFPD+SKKV SL + +   P  D T DTSKSP YWSRVCL NMA L+KE 
Sbjct: 241  GILKTEENGSSFPDISKKVPSLPNHIKAKPELDSTADTSKSPCYWSRVCLHNMAILSKEA 300

Query: 300  TTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKS 359
            TTVRRVLEP F  FDAEN+WS+E G+A SVL+YLQSLLEESG+NSHLLL  LVKHLDHK+
Sbjct: 301  TTVRRVLEPFFHNFDAENYWSSEKGLAYSVLMYLQSLLEESGDNSHLLLSILVKHLDHKN 360

Query: 360  VAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAK 419
            V KQP  QT+IV++ T+LAQNAK   S+A++G I DL+KHLRKC+Q S E SSS D   +
Sbjct: 361  VVKQPHIQTDIVNVTTQLAQNAKQQTSLAMVGAITDLMKHLRKCMQYSAEASSSTDVTDQ 420

Query: 420  TNADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIIST 479
            +N  LQ +LE CIS LS KVGDVGPILD+MA VLEN+  NT+VA+TTISAV+RTAQIIS+
Sbjct: 421  SNMALQSALEICISQLSNKVGDVGPILDMMAVVLENIPTNTIVAKTTISAVYRTAQIISS 480

Query: 480  IPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMPSLLSPRSEQNKETSDA 539
            +PNISY  KAFPEALFHQLLLAMAHPDHETRVGAH V S VLMPSL  P  +QN  +S+A
Sbjct: 481  VPNISYHKKAFPEALFHQLLLAMAHPDHETRVGAHHVFSTVLMPSLACPWVDQNGISSEA 540

Query: 540  VSGALPVGASQKVRSASFSFQDEGKEKEEFLNGGLSAEERKTSDVDVKQCTY-----QSY 594
             SG   V   QKV S SFS Q  GK   E  +G L   E ++   DVKQ T      QSY
Sbjct: 541  FSGFSAVNTLQKVSSQSFSIQ-VGKNDTESTDGEL--REERSQIADVKQSTLSPSYAQSY 597

Query: 595  SFKRAVTDGKM-LTSFRLSSHQLSLLLSSIWVQATSTENSPANFEAMAHTYNIALLFTRS 653
            SFK A+TDGKM  TS RLSSHQ+SLLLSSIWVQATS EN+PANFEAMAHTYNIALLFTRS
Sbjct: 598  SFKHAMTDGKMEYTSLRLSSHQVSLLLSSIWVQATSPENTPANFEAMAHTYNIALLFTRS 657

Query: 654  KRSSHVALIRCFQLAFSLRRISLDHEGGLRPSRRRSLFTLASYMLIFSARAGNLPELIPL 713
            K SSHVAL+RCFQLAFSLR ISLD EGGL  SRRRSLFTLASYMLIFSARAGNLPELIP+
Sbjct: 658  KTSSHVALVRCFQLAFSLRSISLDQEGGLHASRRRSLFTLASYMLIFSARAGNLPELIPI 717

Query: 714  VKASVTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLK 773
            VKAS+TE  VDPYLELV+DIRL+AVC +S + K  YGSQ+DE +A+KSL+AIELDDR LK
Sbjct: 718  VKASLTETIVDPYLELVKDIRLKAVCIESNE-KVVYGSQQDELSALKSLSAIELDDRQLK 776

Query: 774  ETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQA 833
            ETVISHFMTK+ KLSEDELS MKKQLL GFSPDDAYP G PLFMETPRPCSPLA++EFQ 
Sbjct: 777  ETVISHFMTKYGKLSEDELSGMKKQLLQGFSPDDAYPFGAPLFMETPRPCSPLAQIEFQP 836

Query: 834  FDEVMPLAALTDEEALPEPNGSQSDRKTSLSVNTLDILSVNELLDSVLETARQVASYPVV 893
            F E +   ALTDEEA PE +GSQSDRKTSLS+NTLDILSVN+LL+SVLETARQVAS+PV 
Sbjct: 837  FREAIAPDALTDEEAFPEIDGSQSDRKTSLSINTLDILSVNQLLESVLETARQVASFPVS 896

Query: 894  STTVPYDQMKSQCEALVTGKQQKMSVLQSFKTQQEVKALVVSSGYNQNDPPLPIMEVV-V 952
            ST +PYDQMKSQCEALVTGKQQKMSVLQSFK QQ+ KA+VV   Y +N+  +P  + +  
Sbjct: 897  STPIPYDQMKSQCEALVTGKQQKMSVLQSFK-QQDTKAIVV---YGENEQSIPSTKSLDF 952

Query: 953  SEGNLRLPSIERVRTKDQLAICSQEYGQYSFRLPPSSPYDKFLKAAGC 1000
             E +L+L + E VR +DQL +CS EYGQ SFRLPPSSPYDKF+KAAGC
Sbjct: 953  LEDDLKLVNKEHVRGRDQLLLCSHEYGQQSFRLPPSSPYDKFMKAAGC 1000

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224093152\|ref\|XP_002309810.1\| predicted protein [Populus trichocarpa] gi\|222852713\|gb\|EEE90260.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255584652\|ref\|XP_002533049.1\| conserved hypothetical protein [Ricinus communis] gi\|223527168\|gb\|EEF29339.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356557372\|ref\|XP_003546990.1\| PREDICTED: uncharacterized protein LOC100811354 [Glycine max]	Back alignment and taxonomy information

>gi\|356547310\|ref\|XP_003542058.1\| PREDICTED: uncharacterized protein LOC100806860 [Glycine max]	Back alignment and taxonomy information

>gi\|356541147\|ref\|XP_003539042.1\| PREDICTED: uncharacterized protein LOC100817330 [Glycine max]	Back alignment and taxonomy information

>gi\|449446245\|ref\|XP_004140882.1\| PREDICTED: uncharacterized protein LOC101203725 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357454465\|ref\|XP_003597513.1\| EFR3-like protein [Medicago truncatula] gi\|355486561\|gb\|AES67764.1\| EFR3-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356544523\|ref\|XP_003540699.1\| PREDICTED: uncharacterized protein LOC100799047 [Glycine max]	Back alignment and taxonomy information

>gi\|449523714\|ref\|XP_004168868.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230004, partial [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1000
TAIR\|locus:2198846		1003	AT1G05960 "AT1G05960" [Arabido	0.743	0.740	0.529	4.2e-241
TAIR\|locus:2178953		1025	AT5G21080 "AT5G21080" [Arabido	0.503	0.490	0.563	4.3e-204
TAIR\|locus:2054416		1025	AT2G41830 [Arabidopsis thalian	0.582	0.567	0.479	8.4e-199
TAIR\|locus:2148443		983	AT5G26850 "AT5G26850" [Arabido	0.931	0.947	0.334	4.4e-139
WB\|WBGene00016311		859	C32D5.3 [Caenorhabditis elegan	0.219	0.254	0.253	3e-12
ZFIN\|ZDB-GENE-040426-1681		687	efr3a "EFR3 homolog A (S. cere	0.198	0.288	0.25	4.5e-10
FB\|FBgn0086784		834	stmA "stambha A" [Drosophila m	0.17	0.203	0.244	3.8e-09
MGI\|MGI:2444851		817	Efr3b "EFR3 homolog B (S. cere	0.205	0.250	0.224	3.6e-06
UNIPROTKB\|E5RJS1		133	EFR3A "Protein EFR3 homolog A"	0.128	0.962	0.242	0.00022
ASPGD\|ASPL0000047074		1156	AN2496 [Emericella nidulans (t	0.08	0.069	0.312	0.00085

TAIR\|locus:2198846 AT1G05960 "AT1G05960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1833 (650.3 bits), Expect = 4.2e-241, Sum P(2) = 4.2e-241
 Identities = 406/767 (52%), Positives = 521/767 (67%)

Query:   245 EEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRR 304
             ++ +D+  P+M+KKVS  K + +       MD SKSPSYWS VCL N+A+LAKETTTVRR
Sbjct:   250 DQISDTKIPNMTKKVS-FKPNPVTDYKLENMDISKSPSYWSMVCLCNIAKLAKETTTVRR 308

Query:   305 VLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQP 364
             VLEPL   FD+ ++WS + GVA SVLL+LQS LEESGEN H+L+ +L+KHLDHK+V KQ 
Sbjct:   309 VLEPLLTAFDSGDYWSPQKGVASSVLLFLQSRLEESGENCHVLVSSLIKHLDHKNVIKQQ 368

Query:   365 LAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADL 424
               Q N+V++AT LA +AK  AS A+   I DLIKHLRKCLQN+ E   S D   K N+DL
Sbjct:   369 GLQINMVNVATCLALHAKQQASGAMTAVIADLIKHLRKCLQNAAESDVSVD-KTKQNSDL 427

Query:   425 QYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNIS 484
             Q++LENCI+ LS KVGD GPILD+ A VLE +S N V++RTT SA+ R A I+S +PN+S
Sbjct:   428 QHALENCIAELSNKVGDAGPILDMFAVVLETISTNVVLSRTTASAILRAAHIVSVVPNVS 487

Query:   485 YRNKAFPEALFHQLLLAMAHPDHETRVGAHTXXXXXXXXXXXXXXXEQNKETSDAVSGAL 544
             Y  K FP+ALFHQLLLAM+H D  TRV AH                +Q+KETS+AVSG+L
Sbjct:   488 YHKKVFPDALFHQLLLAMSHADCTTRVEAHNIFSVVLLGTLRLPWSDQHKETSEAVSGSL 547

Query:   545 PVGASQKVRSASFSFQDEGKEK-EEFLNGGLSAEERKTSDVDV-----KQCTYQSYSFKR 598
              V     VR+     Q+E KEK E+ LN  L  +    S   V     +Q + QS    +
Sbjct:   548 SVDGICTVRN-----QEEEKEKVEKSLNSELCKDVNHISRPSVSGQTSQQLSCQSLDSLK 602

Query:   599 AVTDG-KMLTSFRXXXXXXXXXXXXIWVQATSTENSPANFEAMAHTYNIALLFTRSKRSS 657
              + DG K L S R            +W+QATST+N+P NFEAMA TY I LLF+ +KRS+
Sbjct:   603 DLDDGIKSLCSLRLSSHQVNMLLSSLWIQATSTDNTPENFEAMASTYQITLLFSLAKRSN 662

Query:   658 HVALIRCFQLAFSLRRISLDHEGGLRPSRRRSLFTLASYMLIFSARAGNLPELIPLVKAS 717
             H+AL++CFQLAFSLR +SL+ +GG++ SRRRS+FT ASYMLIF A+  N+ EL+P++K S
Sbjct:   663 HMALVQCFQLAFSLRNLSLNQDGGMQHSRRRSIFTFASYMLIFGAKISNILELVPIIKES 722

Query:   718 VTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVI 777
             +T + VDPYL L  DIRL+AVC+   + +T YGS +D+ AA+ S + I  DDR LKE VI
Sbjct:   723 LTAQMVDPYLVLEGDIRLRAVCSGFPQEET-YGSDKDDSAALNS-SVIVTDDRRLKEIVI 780

Query:   778 SHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEV 837
             +HF +K + LSE+E  +++K++   FS DDA+ LGG LF +TP P SPL + E  AF+EV
Sbjct:   781 THFTSKLQTLSEEEQLNLRKEIQSDFSLDDAHSLGGQLFTDTPGPSSPLNQTELPAFEEV 840

Query:   838 MPLAALTDEEAL-PEPNGSQSDRKTSLSVNT--LDILSVNELLDSVLETARQVASYPVVS 894
               L+ +   E + P  +GSQS  +TSLS NT  +D+LSVNELL+SV ETARQVAS PV S
Sbjct:   841 -ELSDIAAFEGISPGASGSQSGHRTSLSTNTNPVDVLSVNELLESVSETARQVASLPVSS 899

Query:   895 TTVPYDQMKSQCEALVTGKQQKMSVLQSFKTQQEVKALVVSSGYNQNDPPLPIMEVV-VS 953
               VPYDQM +QCEALVTGKQQKMSVL+SFK Q   KA  ++S  N+ D    + E     
Sbjct:   900 IPVPYDQMMNQCEALVTGKQQKMSVLRSFKPQA-TKA--ITSEDNEKDEQYLLKETEEAG 956

Query:   954 EGNLRLPSIERVRTKDQLAICSQEYGQYSFRLPPSSPYDKFLKAAGC 1000
             E + +   +  V+ + QL   SQE  Q SFRLPPSSPYDKFLKAAGC
Sbjct:   957 EDDEKAIIVADVQPQGQLGFFSQEVPQNSFRLPPSSPYDKFLKAAGC 1003

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2178953 AT5G21080 "AT5G21080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054416 AT2G41830 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2148443 AT5G26850 "AT5G26850" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

WB\|WBGene00016311 C32D5.3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1681 efr3a "EFR3 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0086784 stmA "stambha A" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

MGI\|MGI:2444851 Efr3b "EFR3 homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E5RJS1 EFR3A "Protein EFR3 homolog A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000047074 AN2496 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VII0821	hypothetical protein (988 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1000
KOG1877		819	consensus Putative transmembrane protein cmp44E [G	100.0
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	94.6
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	94.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	93.68
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	91.26
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	89.71
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	88.37
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	86.82
KOG1877		819	consensus Putative transmembrane protein cmp44E [G	80.95
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	80.49

>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=2e-133  Score=1179.08  Aligned_cols=792  Identities=32%  Similarity=0.449  Sum_probs=639.9

Q ss_pred             CCccccccCCCcccccCchhhhhhhhccccCCCCCCCCChhhhhHHHHHHhhCCCChhhhHHHHHHHHHHHHhhhcCCce
Q 001890           12 CGNLCFFCPSMRARSRQPVKRYKKMLADIFPRNQDAEPNDRKIGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSV   91 (1000)
Q Consensus        12 c~~~C~cCpalR~rsrqpvkRykkLV~~iyP~~p~~~Pn~~~lsKL~~Ya~s~P~KL~KIg~yLekR~~kDl~r~r~G~V   91 (1000)
                      |+|||+|||+|||       ||||||++||||+|++|||+++|+||||||++||+||||||.||++||+||+||+|+|+|
T Consensus         1 ~~s~c~cc~alR~-------RyKkLV~~iFPr~~e~gpn~s~m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v   73 (819)
T KOG1877|consen    1 CESMCCCCPALRP-------RYKKLVDNIFPRSPEDGPNKSKMEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSV   73 (819)
T ss_pred             CCceeeecHHHHH-------HHHHHHHHhCCCCCCCCcccccHHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcch
Confidence            8999999999999       999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeHHHHHHHHHHhcccccCcchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCch-hhHHhhhhHHHHHHHHhHhc
Q 001890           92 KVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDG-TYMFNLEGLIPKLCQLAQEM  170 (1000)
Q Consensus        92 ~V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~-~y~~~ye~fV~~f~~ma~~~  170 (1000)
                      +|+|+||++||++||+|+|+||++||+||+.||++ ++++|+|+||++|++|+++++|+ +|||+||+||++||+||++.
T Consensus        74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes-~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~  152 (819)
T KOG1877|consen   74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLES-NNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHER  152 (819)
T ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999995 59999999999999999999998 99999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHhHhhh---------ccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhh
Q 001890          171 GNDERALRLRSAGLQVLAYMVKFM---------GEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQG  241 (1000)
Q Consensus       171 ~~de~~~rlR~AGLqAL~~vV~~~---------~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e  241 (1000)
                      |+++.+..+|.||||||+||||+|         ||.+|    +|+|||.+++|++...   +                  
T Consensus       153 ~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h----~d~ivpsl~~~l~~~e---~------------------  207 (819)
T KOG1877|consen  153 GDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQH----MDKIVPSLLFELQSIE---N------------------  207 (819)
T ss_pred             cchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhh----hccchhhHHHhhcchh---h------------------
Confidence            999999999999999999999998         78888    9999999999998431   0                  


Q ss_pred             hcccccCCCCCCcccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhcchHHHHhhhhhhhccCCCCCCC
Q 001890          242 LQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWST  321 (1000)
Q Consensus       242 ~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A~e~ttvr~VLepvf~~lD~~~~Wsp  321 (1000)
                          +++..+    .+|.+..       ..+.-+++..+|++||++|+|+|.++|+.+|++|.+|+|+|.|+|.|.+|.|
T Consensus       208 ----~~~~~S----~s~~~~~-------~~~~a~~~~~~p~vla~~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p  272 (819)
T KOG1877|consen  208 ----LGKRES----DSRIRTF-------SLLAAGDKTSDPKVLAERCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTP  272 (819)
T ss_pred             ----cccccC----cccccCc-------cccccCCcccCcchhHHHHHHHhhccccccchHHHHHHHHHhccccceeecC
Confidence                010000    1111111       1122334445699999999999999999888999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhccC-CCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Q 001890          322 ETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKS-VAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHL  400 (1000)
Q Consensus       322 ~~gfAi~vf~~iq~l~e~~~Q~~~lvLs~Lv~HLd~k~-v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHL  400 (1000)
                      +||||++||+++++++  ++|++|.|++++|.|||++. +.+.|.+++.||.+.+.+++..++++++  ++++++|+|||
T Consensus       273 ~n~fav~~~~~vi~~i--q~q~s~~v~~~li~hLd~~~~~~~~~r~~~~iv~~~~~~i~~~~v~ps~--l~i~n~l~rhL  348 (819)
T KOG1877|consen  273 PNGFAVHVFKIVIYLI--QRQYSYFVIQELINHLDNKKLVAKKPRLGLSIVLVSIALIAATSVGPSV--LIIFNDLLRHL  348 (819)
T ss_pred             CCccchHHHHHHHHHH--hhccchHHHHHHHHHHHhhcccccCccccchhHHHHHHHHHhcccchHH--HHHHHHHHHHH
Confidence            9999999999999988  89999999999999999988 8889999999999999888777777777  88899999999


Q ss_pred             HHhhcccccCCCCCCccccc----hHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHhhcCCCccchhhhH-HHHHH---
Q 001890          401 RKCLQNSVELSSSGDGMAKT----NADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTI-SAVHR---  472 (1000)
Q Consensus       401 Rkslq~s~~~s~~g~~~~~~----~~~Lq~aL~~CIg~LA~hV~da~qI~DMmavmLenis~~~~~ar~tv-sa~y~---  472 (1000)
                      |+|++++ ++++.|.+....    |..+++++++.++.+++++||+|    +|++|++-++++|..+|..+ +.-+.   
T Consensus       349 R~si~~s-~~~~~~~~~~~~~~~~e~~~q~~li~~~~~~~~~~P~~q----~~~vm~~~~~~v~~~sk~~~~~~~liq~~  423 (819)
T KOG1877|consen  349 RKSISFS-DDGNIGLETDNGNYMIEAVVQEALIQLTKKFANTLPDYQ----KMAVMLFIMSKVPDLSKPSILGELLIQAM  423 (819)
T ss_pred             Hhhcccc-ccccCCchhhhhHHHHHHHHHHHHHHHHHhhcccCchHH----HHHHHHhhcccccccCCccccHHHHHHHH
Confidence            9999998 455555544443    45555555555555555555555    55555555599998887443 32222   


Q ss_pred             ---HHHHHhhcCCcccccccCcHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCcccchhhhccccccCCCCcc
Q 001890          473 ---TAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMPSLLSPRSEQNKETSDAVSGALPVGAS  549 (1000)
Q Consensus       473 ---ta~i~a~~pn~sy~~kaFP~all~qLL~am~~pD~e~Rl~a~~If~~lL~ps~~~p~~d~~~~ls~~vs~f~~~~s~  549 (1000)
                         ....++.--.+.+--.+||++||+.||...+.+|.+.|+...+||+.+.++      |+|..+++. ++.+      
T Consensus       424 ~~~s~L~~s~s~~i~~~~l~~~sS~L~sll~~~l~r~~~~~~~t~eil~sl~d~------~~n~a~l~~-v~~~------  490 (819)
T KOG1877|consen  424 LLKSLLSVSTSYQIVSVALAFPSSFLDSLLSTALMRDAELRLVTLEILHSLKDS------HDNTAKLSG-VSYL------  490 (819)
T ss_pred             HHHHHhhhhhcceeeeehhhccHHHhhhhhhhhcCcccchhhHHHHHHHHHHHh------hcccccccc-ceee------
Confidence               112221111222344679999999999999999999999999999999999      999888776 7544      


Q ss_pred             hhcc--ccccccccccchhhhhhcCCCccccccccCCcccccccccccccccccccccchhhccchhHHHHHHHHHHHhh
Q 001890          550 QKVR--SASFSFQDEGKEKEEFLNGGLSAEERKTSDVDVKQCTYQSYSFKRAVTDGKMLTSFRLSSHQLSLLLSSIWVQA  627 (1000)
Q Consensus       550 ~~~~--~~~l~~ek~sr~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrls~~q~~lLlssiw~qa  627 (1000)
                       .+.  +.+|++++++++|++|+                                       |+.++|+..++..+|.+.
T Consensus       491 -~~~~~~~~ls~~~~s~~D~~f~---------------------------------------kk~~~~i~~~~~~~~~~~  530 (819)
T KOG1877|consen  491 -LESVDSLTLSREKPSRQDTIFM---------------------------------------KKNSQQIYRLLYSITATS  530 (819)
T ss_pred             -ccccchhhhcccchhHHHHHHH---------------------------------------HhchHHHHHHHHHhhhhh
Confidence             222  35999999999999999                                       867777777777777776


Q ss_pred             ccCCChhhhHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHHHhhhcCC
Q 001890          628 TSTENSPANFEAMAHTYNIALLFTRSKRSSHVALIRCFQLAFSLRRISLDHEGGLRPSRRRSLFTLASYMLIFSARAGNL  707 (1000)
Q Consensus       628 ~~~~N~p~n~EAi~~Tysl~lL~s~~k~s~~e~lv~~fqLafsLr~~sl~~~~~L~ps~RrsL~tLa~~ml~f~ak~~~i  707 (1000)
                      .   |+|+|||++|.|+++..+   ++ +++|+|+++||++|++|++++.++++||+++||+|||++++||+|++++++|
T Consensus       531 ~---~~~~n~~~~~~~~sl~~i---~~-~~~e~li~~~~~~~~l~~ls~~~~~~lp~~~r~~i~al~as~lv~~s~~~~i  603 (819)
T KOG1877|consen  531 D---NVPENYEAIYNTASLILI---EK-SINEVLIELFRLALTLQQLSLMNERPLPNSRRRSIFALAASYLVLISQAFAI  603 (819)
T ss_pred             h---cchhhHHHHhhhHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccHHHHHHHHHHHHHHHhcC
Confidence            6   999999999998876554   55 4999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHhhccccCCCceeecccceeEEEecCCCcccccCCChhhHHHHHHHhhhhccchhh-HHHHHHHHHHHHhcC
Q 001890          708 PELIPLVKASVTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRH-LKETVISHFMTKFEK  786 (1000)
Q Consensus       708 p~L~~~vk~~l~~r~~dP~L~lv~d~~l~a~~~~~~~~~~~ygs~eD~~~Al~~Ls~i~~~~~~-~~e~~~~~~~~~~~~  786 (1000)
                      |             +.|||++.|+|||++|+          ||+..|+++|...|+.+...... +++....+|++.+.+
T Consensus       604 ~-------------~l~~~~~~v~D~~~~a~----------~~~~~d~~~ass~l~~~~~~~~s~s~~~~~~~v~k~l~~  660 (819)
T KOG1877|consen  604 P-------------TLDPFLQKVDDCRLEAV----------EGPSSDDNDASSTLSEIALAAESLSRELPALMVVKELIK  660 (819)
T ss_pred             c-------------ccchHHHHHHHHHHHhc----------cCcccCchhhhhhHHHHHhhcccccccccHHHHHHHHHh
Confidence            9             68999999999999776          89999999999999999766555 999999999999999


Q ss_pred             CCHHHHHHHHHHHccCCCCCCCCCCCCCCcccCCCCCCcchhhcccccccccCCcccCCCCcCCCCCCCCCCcccccCcC
Q 001890          787 LSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSVN  866 (1000)
Q Consensus       787 ~~e~e~~~i~~qll~~F~pdd~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~s~~~~~~~~s~~  866 (1000)
                      +++.|....++||+.      +||+|+|+..+++..   ..+++..+ |        .++..            .+.--.
T Consensus       661 ~s~k~~~~~~~rL~~------~~p~g~q~~~~p~~~---~~~~~~~~-d--------~~~~~------------~s~~d~  710 (819)
T KOG1877|consen  661 ESLKESGKDSERLFT------ACPYGSQLTKEPGYQ---SISKESKP-D--------REDQR------------FSSNDL  710 (819)
T ss_pred             hcccccchHHHHHhh------hCCccccccCCCccc---ccccccCC-c--------ccccc------------cccccc
Confidence            999999999999988      999999999986222   33333322 1        01111            111123


Q ss_pred             CCCccchHHHHHHHHhhhcccccccccCCC-CChhHHHHHHHHHhhhccccchhhhcchhhhhhhhhhcCCCCCCCCCCC
Q 001890          867 TLDILSVNELLDSVLETARQVASYPVVSTT-VPYDQMKSQCEALVTGKQQKMSVLQSFKTQQEVKALVVSSGYNQNDPPL  945 (1000)
Q Consensus       867 ~~~~l~v~qllesv~e~a~qv~~~~vs~~~-~py~~m~~qCEal~~gkqqKmS~~~s~~~~~~~~~~~~~~~~~~~~~~~  945 (1000)
                      ++..++||++++++.++++       |.+| ++|+||+.| |++++|||||++  ++...     ..+.+.++.......
T Consensus       711 ~~~~~~vd~~~n~~~~~t~-------~~~~~vs~~~~~~~-e~~~~~~~q~~~--~~~~s-----~~~s~~~~~~~~~r~  775 (819)
T KOG1877|consen  711 VTFSLDVDKILNPPEETTK-------SNPPEVSIDQMDAH-EATLSGKQQKRS--RSLTS-----STFSPSPFDEFLART  775 (819)
T ss_pred             cccccchhhccCCcccccc-------CCcccCCHHHHhhH-HHHhhhhhhhcc--ccccc-----cccCcCchHHHHhhc
Confidence            4678899999999999987       7777 999999988 999999999999  22111     110111111111111


Q ss_pred             CCcccccccCCCCCCcc-ccccccccccccccccCCCcccCCCCCccchhhhc
Q 001890          946 PIMEVVVSEGNLRLPSI-ERVRTKDQLAICSQEYGQYSFRLPPSSPYDKFLKA  997 (1000)
Q Consensus       946 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lP~ssPyD~Flka  997 (1000)
                      .....+..+.++..... ...+.++..|.++.+         +|+|||||++|
T Consensus       776 ~s~~~~~~d~~Ls~~l~~t~~~~~~~~~~~~~~---------~s~~~~~~~~~  819 (819)
T KOG1877|consen  776 TSGENLNEDFRLSRELAPTLVRRGQITRSTELQ---------ASSPKDNFETA  819 (819)
T ss_pred             cCCCCchhhhhHHHHHhhccCCCCCCccccccc---------cCCCcchhhcC
Confidence            11111222222222222 235556667777665         99999999986

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1000
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-16

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 84.5 bits (208), Expect = 1e-16
 Identities = 116/724 (16%), Positives = 222/724 (30%), Gaps = 243/724 (33%)

Query: 199 HMSMDFD---------KIISVTLENFV-DLQMKPANGKEGRQHSQSEDQWVQGLQNEEDN 248
           H  MDF+          I+SV  + FV +   K             +D     L  EE  
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCK-----------DVQDMPKSILSKEE-- 50

Query: 249 DSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRRVLEP 308
                        +   +++              +W    L     L+K+   V++ +E 
Sbjct: 51  -------------IDHIIMSKDAVSGTLR----LFW---TL-----LSKQEEMVQKFVEE 85

Query: 309 LFQI---FDAENHWSTETGVACSVLLYLQ-SLLEESGENSHLLLCNLVKHLDHKSVAKQP 364
           + +I   F       TE           Q S++          L N            Q 
Sbjct: 86  VLRINYKFLMSP-IKTE---------QRQPSMMTRMYIEQRDRLYNDN----------QV 125

Query: 365 LAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSG----DGMA-- 418
            A+ N+                     +       LR+ L    EL  +     DG+   
Sbjct: 126 FAKYNV---------------------SRLQPYLKLRQALL---ELRPAKNVLIDGVLGS 161

Query: 419 -KT--------NADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISA 469
            KT        +  +Q  ++  I WL+  + +      V+  +L+ +     +     S 
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLE-MLQKLLYQ--IDPNWTSR 216

Query: 470 VHRTAQIISTIPNISYR------NKAFPEALFHQLLLAMAHPDHETRVGAHTVLSV---- 519
              ++ I   I +I         +K +   L   L+L      +   V      +     
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVL-----LN---VQNAKAWNAFNLS 265

Query: 520 --VLMPSLLSPRSEQNKETSDAVSGALPVGASQKVRSASFSFQDEGKEK-EEFLN---GG 573
             +L+ +       + K+ +D +S A     S    S + +  DE K    ++L+     
Sbjct: 266 CKILLTT-------RFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQD 317

Query: 574 LSAEERKTS---------DVDVKQCTYQSYSFKRAVTDGKMLTSFRLSSHQL-------- 616
           L  E   T+          +     T+ ++   + V   K+ T    S + L        
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 617 --------------SLLLSSIWVQATSTENSPANFEAMAHTYNIALLFTRSKRSSHVALI 662
                         ++LLS IW     ++        +   +  +L+  + K S+    I
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVM----VVVNKLHKYSLVEKQPKEST----I 426

Query: 663 RCFQLAFSLRRISLDHEGGLRPSRRRSLFTLASYMLIFSARAGNLPELIP---------- 712
               +   L+   L++E  L     RS+  +  Y +    +  +  +LIP          
Sbjct: 427 SIPSIYLELKV-KLENEYAL----HRSI--VDHYNIP---KTFDSDDLIPPYLDQYFYSH 476

Query: 713 ----LVKASVTEKTVDPYLELVEDIR-LQAVCADSCKVK---TAYGSQEDEDAAMKSLAA 764
               L      E+ +  +  +  D R L+       K++   TA+ +       ++ L  
Sbjct: 477 IGHHLKNIEHPER-MTLFRMVFLDFRFLEQ------KIRHDSTAWNASGSILNTLQQLKF 529

Query: 765 ----IELDDRHLKETV--ISHFMTKFE-KLSEDELSDMKKQLLLGFSPDDAYPLGGPLFM 817
               I  +D   +  V  I  F+ K E  L   + +D+   L +    +D       +F 
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL---LRIALMAED-----EAIFE 581

Query: 818 ETPR 821
           E  +
Sbjct: 582 EAHK 585

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1000
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.18
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.18
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.17
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.1
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.1
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.0
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.82
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	96.8
1qgr_A		876	Protein (importin beta subunit); transport recepto	96.58
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	96.15
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.99
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.76
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	95.04
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	94.27
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	93.46
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	93.17
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	92.69
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	92.5
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	92.38
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	92.29
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	92.02
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	91.75
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	89.04
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	87.41
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	86.26
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	81.75

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

Probab=97.18  E-value=0.12  Score=61.94  Aligned_cols=312  Identities=10%  Similarity=0.067  Sum_probs=180.0

Q ss_pred             hhhHHHHHHhh---CCCChhhhHHHHHHHHHHHHhhhcCCcee-eHHHHHHHHHHhcc----cccCcchhhHHHHHHHHH
Q 001890           53 KIGKLCEYASK---NPLRIPKITTLLEQRCYKDLRNENFGSVK-VVVCIYKKFLSSCK----EQMPLFASSLLGIIRTLL  124 (1000)
Q Consensus        53 ~lsKL~~Ya~s---~P~KL~KIg~yLekR~~kDl~r~r~G~V~-V~l~i~~~Ll~~C~----~~l~LFa~s~L~Ii~~LL  124 (1000)
                      -+|.++.+...   .+.-++.|-..|-+.+..+      ..|+ -+..++..++..|.    ..+.-|.+.++..+-.+|
T Consensus       434 ~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~------~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l  507 (861)
T 2bpt_A          434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDH------PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA  507 (861)
T ss_dssp             HHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            34555555443   2344666666666554221      1222 24456777888875    446566677777777777


Q ss_pred             hcc-CCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhc--------C--chHHHHHHHHHHHHHHHHhHhh
Q 001890          125 EQT-RQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEM--------G--NDERALRLRSAGLQVLAYMVKF  193 (1000)
Q Consensus       125 ~qs-~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~--------~--~de~~~rlR~AGLqAL~~vV~~  193 (1000)
                      +.. .+++++..++.++..++....+. ....+..+++.+.+.-...        .  +++....+|...+++|..++..
T Consensus       508 ~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~  586 (861)
T 2bpt_A          508 NRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK  586 (861)
T ss_dssp             TCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            621 23567777888887777654432 2222344555554443221        1  1134566889999999999998


Q ss_pred             hccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCC
Q 001890          194 MGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDP  273 (1000)
Q Consensus       194 ~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~  273 (1000)
                      .+.  ++...++.++|.++..+....                                 +                    
T Consensus       587 ~~~--~~~~~~~~l~~~l~~~l~~~~---------------------------------~--------------------  611 (861)
T 2bpt_A          587 SPS--SVEPVADMLMGLFFRLLEKKD---------------------------------S--------------------  611 (861)
T ss_dssp             CGG--GTGGGHHHHHHHHHHHHHSTT---------------------------------G--------------------
T ss_pred             hhh--hhHHHHHHHHHHHHHHHccCC---------------------------------C--------------------
Confidence            875  445567788888877765320                                 0                    


Q ss_pred             CCCCCCChHHHHHHHHHHHHHhhhh-cc-hHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhc-CCCcchHHHH
Q 001890          274 TMDTSKSPSYWSRVCLDNMARLAKE-TT-TVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEES-GENSHLLLCN  350 (1000)
Q Consensus       274 ~~e~~e~p~vlA~~CLr~l~~~A~e-~t-tvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~-~Q~~~lvLs~  350 (1000)
                           .....-+..|+..++....+ .. .+..++..++..+. +..|.- ...|+.++..+...+... ..+-.-++..
T Consensus       612 -----~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~v-r~~a~~~l~~l~~~~~~~~~~~~~~l~~~  684 (861)
T 2bpt_A          612 -----AFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPV-SITAVGFIADISNSLEEDFRRYSDAMMNV  684 (861)
T ss_dssp             -----GGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-CTTSHH-HHHHHHHHHHHHHHTGGGGHHHHHHHHHH
T ss_pred             -----CcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccHHH-HHHHHHHHHHHHHHhchhccchHHHHHHH
Confidence                 01122344566666543322 21 25567777777774 333333 345666666665543211 0122356667


Q ss_pred             HHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHH
Q 001890          351 LVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLEN  430 (1000)
Q Consensus       351 Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~  430 (1000)
                      +++.|.+.+  .++.+|..++.++..++....    -.....+..++..|.+.++...+. ++ .+..+....++.+..+
T Consensus       685 l~~~l~~~~--~~~~vr~~~~~~l~~l~~~~~----~~~~~~l~~~l~~l~~~~~~~~~~-~d-~d~~~~~~~vr~~~l~  756 (861)
T 2bpt_A          685 LAQMISNPN--ARRELKPAVLSVFGDIASNIG----ADFIPYLNDIMALCVAAQNTKPEN-GT-LEALDYQIKVLEAVLD  756 (861)
T ss_dssp             HHHHHHCTT--CCTTHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHHHHHTCCCSS-SS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcc--ccHhhhHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhcCCCC-CC-hHHHHHHHHHHHHHHH
Confidence            777776633  247788888888888876432    234677788888888887654321 11 0111122467788888


Q ss_pred             HHHHhhcccCC
Q 001890          431 CISWLSKKVGD  441 (1000)
Q Consensus       431 CIg~LA~hV~d  441 (1000)
                      +++.++..++.
T Consensus       757 ~~~~i~~~l~~  767 (861)
T 2bpt_A          757 AYVGIVAGLHD  767 (861)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHcc
Confidence            99999888874

PyMOL of 2bpt

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1000
d1b3ua_		588	Constant regulatory domain of protein phosphatase	96.31
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.27
d1b3ua_		588	Constant regulatory domain of protein phosphatase	95.66
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.42
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	92.57
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.13
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	90.9
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	87.95
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	84.74
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	83.09
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	82.47
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	82.29

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.025  Score=61.81  Aligned_cols=133  Identities=11%  Similarity=0.063  Sum_probs=76.8

Q ss_pred             CchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccCCC
Q 001890          363 QPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDV  442 (1000)
Q Consensus       363 ~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~da  442 (1000)
                      ++.+|..+++.+..++..-....   .-+.   +..-+.+.+.-             .....+.+-.+|++.|+.+.+..
T Consensus       415 ~~~~r~~~~~~l~~l~~~~~~~~---~~~~---l~~~l~~~l~D-------------~~~~VR~~A~~~L~~l~~~~~~~  475 (588)
T d1b3ua_         415 KWRVRLAIIEYMPLLAGQLGVEF---FDEK---LNSLCMAWLVD-------------HVYAIREAATSNLKKLVEKFGKE  475 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCGGG---CCHH---HHHHHHHGGGC-------------SSHHHHHHHHHHHHHHHHHHCHH
T ss_pred             cHHHHHHHHHHHHHHHHHcChHh---HHHH---HHHHHHhhccC-------------CchhHHHHHHHHHHHHHHHhCcH
Confidence            57788888888877765321111   0112   22223333321             13566778888999999988765


Q ss_pred             chHHHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 001890          443 GPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVL  521 (1000)
Q Consensus       443 ~qI~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~~pD~e~Rl~a~~If~~lL  521 (1000)
                      .....++..+.+-+......-|  .++++-...+...++.-     .|.+.++..|+...-.|.|.+|..|.+.+..+.
T Consensus       476 ~~~~~i~~~l~~~~~~~~~~~R--~~~~~~l~~l~~~~~~~-----~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~  547 (588)
T d1b3ua_         476 WAHATIIPKVLAMSGDPNYLHR--MTTLFCINVLSEVCGQD-----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG  547 (588)
T ss_dssp             HHHHHTHHHHHHTTTCSCHHHH--HHHHHHHHHHHHHHHHH-----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHcChH-----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            4444555555444443222223  33444444444222211     123445666888888999999999999998874

PyMOL of d1b3ua_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure