Citrus Sinensis ID: 001911

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------100
MSKAKLKTLSSLIFSSKSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAADSVPNFDAGRCSNDAVMIANTLLTNNDGFGGNTQKFLRQFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEEERSSST
ccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccc
**********SLIFSSKSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLF*********CSPVESVSSEDFAFLRDSLMN*S*******FDAGRCSNDAVMIANTLLTNNDGFGGNTQKFLRQFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEEERS***
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SSSSSSSSSSSSSSSSSSSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSKAKLKTLSSLIFSSKSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAADSVPNFDAGRCSNDAVMIANTLLTNNDGFGGNTQKFLRQFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEEERSSST

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pentatricopeptide repeat-containing protein At1g06710, mitochondrial probableQ9M9X9

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3SPA, chain A
Confidence level:very confident
Coverage over the Query: 672-828
View the alignment between query and template
View the model in PyMOL
Template: 3SPA, chain A
Confidence level:very confident
Coverage over the Query: 301-418,429-462
View the alignment between query and template
View the model in PyMOL
Template: 2XPI, chain A
Confidence level:confident
Coverage over the Query: 198-295,328-337,352-353,365-422,462-618,636-824
View the alignment between query and template
View the model in PyMOL
Template: 2XPI, chain A
Confidence level:confident
Coverage over the Query: 300-407,463,475-618,636-842
View the alignment between query and template
View the model in PyMOL
Template: 2OND, chain A
Confidence level:confident
Coverage over the Query: 638-844,877-914
View the alignment between query and template
View the model in PyMOL
Template: 2OND, chain A
Confidence level:confident
Coverage over the Query: 691-844,879-947
View the alignment between query and template
View the model in PyMOL
Template: 2GW1, chain A
Confidence level:confident
Coverage over the Query: 484-610,635-868,897-987
View the alignment between query and template
View the model in PyMOL
Template: 3HL4, chain A
Confidence level:probable
Coverage over the Query: 17-85
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
1xi4, chain A confident Alignment | Template Structure