Citrus Sinensis ID: 001911
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 997 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M9X9 | 987 | Pentatricopeptide repeat- | yes | no | 0.951 | 0.961 | 0.652 | 0.0 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.635 | 0.727 | 0.292 | 3e-79 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.616 | 0.777 | 0.284 | 2e-76 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.729 | 0.663 | 0.266 | 2e-74 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.715 | 0.779 | 0.276 | 3e-74 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.709 | 0.725 | 0.265 | 4e-74 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.708 | 0.778 | 0.284 | 3e-72 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.555 | 0.880 | 0.272 | 2e-70 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.529 | 0.835 | 0.301 | 2e-70 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.551 | 0.729 | 0.289 | 4e-70 |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1286 bits (3328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/959 (65%), Positives = 763/959 (79%), Gaps = 10/959 (1%)
Query: 27 FSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLM---NP 83
F+ +L A RF+ T PPDD+ G DDPFS S +++++FL DSL+ N
Sbjct: 31 FTCSRYLTA--RFMSTPPPDDMFGF---DDPFSPSDSREVVDLTKEYSFLHDSLVDYGNV 85
Query: 84 SAADSVPNFDAGRCSNDAVMIANTLLTNNDGFGGNTQKFLRQFREKLSESLVVNVLNLIK 143
+ VP + S DA IA+ + +D FG +QKFLRQFREKLSESLV+ VL LI
Sbjct: 86 NVHQVVPIIT--QSSIDARAIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVLRLIA 143
Query: 144 KPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLL 203
+P + FF+WAGRQIGY HT PVYNALV+++ D D++VPE+FL++I ++DKEV G+ L
Sbjct: 144 RPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFL 203
Query: 204 NVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLD 263
NVL+ K CRNG +++ALEELGRLKDF ++P+++ YN LIQ FL+ADRLD+A L++REM
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263
Query: 264 AGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMD 323
A MDGFTL CFAYSLCK G+W+EAL L+E E FVPDTV YTK+ISGLCEASLFEEAMD
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMD 323
Query: 324 LLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYC 383
LNRMRA SC+PNVVT+ LLCGCL K+QLGRCKRVL+MM+ EGCYPSP+IF+SL+HAYC
Sbjct: 324 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYC 383
Query: 384 RSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAG 443
SGD+SYAYKLL KM KCG PGYVVYNILIG ICG++D D+ +LAEKAY+EML AG
Sbjct: 384 TSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAG 443
Query: 444 VVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAF 503
VVLNKINVS+F +CLC AGKYEKA++VIREM+ +GFIPDTSTYSKV+ YLC+AS+ E AF
Sbjct: 444 VVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAF 503
Query: 504 LLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY 563
LLF+EMKR GL+ DVYTYTI++D+FCKAGLIEQAR WF+EM + GC PNVVTYTALIHAY
Sbjct: 504 LLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAY 563
Query: 564 LKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDV 623
LKA+K S ANELFETMLS+GC+PNIVT++ALIDGHCKAG +E+AC+I+ RM G+ ++ DV
Sbjct: 564 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV 623
Query: 624 DIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDG 683
D+YF+ D+N + PNV TYGAL+DG CK H+V EA LLDAMS+ GCEPN IVYDALIDG
Sbjct: 624 DMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDG 683
Query: 684 FCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN 743
CKVGKLDEAQ V ++M EHG +YTY SLIDR FK KR DLA KV+SKMLE+S APN
Sbjct: 684 LCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743
Query: 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803
VVIYTEMIDGL KVGKT+EAYK+M MMEEKGC PNVVTYTAMIDGFG +GK++ CLELL
Sbjct: 744 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 803
Query: 804 QMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREF 863
+M SKG APN+VTYRVLI+HCC +G LD AHNLLEEMKQT+WPTH AGYRKVIEGF++EF
Sbjct: 804 RMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEF 863
Query: 864 IVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL 923
I SLGL++E+G+ D+ P + YR+LID+ IKA RLE+AL L EE+ +FS+ ++
Sbjct: 864 IESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYN 923
Query: 924 LLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICH 982
LIESL LA K++ AF+L+ +M +K PE+ +F LIKGL R +K EAL L I H
Sbjct: 924 SLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISH 982
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 196/669 (29%), Positives = 318/669 (47%), Gaps = 35/669 (5%)
Query: 186 QFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVF 245
Q ++E+G E L LI + G + AL L +K +YN I F
Sbjct: 192 QQMQELGYEPTV---HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 248
Query: 246 LRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALEL---IEKEEFVPDT 302
+ ++D A+ + E+ G D T LCKA R EA+E+ +EK VP T
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308
Query: 303 VLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSM 362
Y MI G A F+EA LL R RA+ IP+V+ + +L CLRK +G+ L +
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILT-CLRK--MGKVDEALKV 365
Query: 363 M--ITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGN 420
+ + P+ ++ LI CR+G A++L M+K G P NI++ +C +
Sbjct: 366 FEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKS 425
Query: 421 EDL-PASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGF 479
+ L A +FE EM ++I + + L G+ + AY V +M+
Sbjct: 426 QKLDEACAMFE-------EMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDC 478
Query: 480 IPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARN 539
++ Y+ +I + E ++++M PD+ +D KAG E+ R
Sbjct: 479 RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRA 538
Query: 540 WFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHC 599
F+E+ P+ +Y+ LIH +KA ++ ELF +M +GC+ + + +IDG C
Sbjct: 539 MFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC 598
Query: 600 KAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAH 659
K G + +A ++ MK EP V TYG++IDGL K+ ++ EA+
Sbjct: 599 KCGKVNKAYQLLEEMKTKG----------------FEPTVVTYGSVIDGLAKIDRLDEAY 642
Query: 660 DLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRL 719
L + E N ++Y +LIDGF KVG++DEA ++ ++++ G PN+YT+ SL+D L
Sbjct: 643 MLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDAL 702
Query: 720 FKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV 779
K + ++ AL M E PN V Y +I+GL KV K +A+ M+++G P+
Sbjct: 703 VKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPST 762
Query: 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEE 839
++YT MI G K G + + L + + G P+ Y +I +A +L EE
Sbjct: 763 ISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEE 822
Query: 840 MKQTYWPTH 848
++ P H
Sbjct: 823 TRRRGLPIH 831
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 183/644 (28%), Positives = 305/644 (47%), Gaps = 29/644 (4%)
Query: 205 VLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRL-DTAYLVYREMLD 263
+LI CCR G ++ LG + G++ + L++ R D +V R M +
Sbjct: 92 ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151
Query: 264 AGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEE------FVPDTVLYTKMISGLCEASL 317
G + F+ LC R +EALEL+ PD V YT +I+G +
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211
Query: 318 FEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHS 377
++A + M R +P+VVT+ ++ + + + + VL+ M+ G P ++S
Sbjct: 212 SDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 271
Query: 378 LIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYA 437
++H YC SG A L KMR G +P V Y++L+ +C N E A K +
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN-----GRCME-ARKIFD 325
Query: 438 EMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDAS 497
M G+ +Q G + + ++ M+ G PD +S +I
Sbjct: 326 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQG 385
Query: 498 EAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYT 557
+ ++A L+F +M++ GL P+ TY +I CK+G +E A +F++M+ EG P + Y
Sbjct: 386 KVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYN 445
Query: 558 ALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGN 617
+LIH K +A EL ML +G N + F ++ID HCK G + + +++ M
Sbjct: 446 SLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM--- 502
Query: 618 AEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVY 677
V I + PNV TY LI+G C K+ EA LL M VG +PN + Y
Sbjct: 503 -----VRIGVK--------PNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549
Query: 678 DALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLE 737
LI+G+CK+ ++++A ++F +M G +P++ TY ++ LF+ +R A ++ ++ E
Sbjct: 550 STLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609
Query: 738 DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDK 797
+ Y ++ GL K T++A ++ + T+ MID KVG+ D+
Sbjct: 610 SGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDE 669
Query: 798 CLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMK 841
+L SS G PN+ TYR++ + GLL+E L M+
Sbjct: 670 AKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSME 713
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 204/766 (26%), Positives = 364/766 (47%), Gaps = 39/766 (5%)
Query: 233 PTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALEL 292
P A +N LI V + + + ++M +G++ T + CK GR+K A+EL
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250
Query: 293 IE--KEEFV-PDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLR 349
++ K + V D Y +I LC ++ + LL MR R PN VT+ L+ G
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310
Query: 350 KRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVV 409
+ ++ ++L+ M++ G P+ F++LI + G++ A K+ M G P V
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370
Query: 410 YNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYN 469
Y +L+ G+C N + F+LA Y M GV + +I + + LC G ++A
Sbjct: 371 YGVLLDGLCKNAE------FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVV 424
Query: 470 VIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFC 529
++ EM G PD TYS +I C + A + + R GL P+ Y+ LI N C
Sbjct: 425 LLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCC 484
Query: 530 KAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIV 589
+ G +++A ++ M+ EG + T+ L+ + KA K ++A E M S G +PN V
Sbjct: 485 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTV 544
Query: 590 TFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGL 649
+F LI+G+ +G+ +A ++ M P +TYG+L+ GL
Sbjct: 545 SFDCLINGYGNSGEGLKAFSVFDEMTKVGH----------------HPTFFTYGSLLKGL 588
Query: 650 CKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNV 709
CK +REA L ++ V + ++Y+ L+ CK G L +A +F +M++ P+
Sbjct: 589 CKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDS 648
Query: 710 YTYGSLIDRLFKDKRLDLALKVISKMLE--DSYAPNVVIYTEMIDGLIKVGKTEEAYKVM 767
YTY SLI L + + +A+ + +K E + PN V+YT +DG+ K G+ +
Sbjct: 649 YTYTSLISGLCRKGKTVIAI-LFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFR 707
Query: 768 LMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCAS 827
M+ G P++VT AMIDG+ ++GK++K +LL +M ++ PN TY +L++
Sbjct: 708 EQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKR 767
Query: 828 GLLDEAHNLLEE-MKQTYWPTHVAGYRKVIEGFSREFIVSLGL-VNEMGKTDSVPIVP-A 884
+ + L + P + + V+ G ++ +GL + + V +
Sbjct: 768 KDVSTSFLLYRSIILNGILPDKLTCHSLVL-GICESNMLEIGLKILKAFICRGVEVDRYT 826
Query: 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVD 944
+ +LI G + A +L + MTS + +++ ++ L+ + ++ + +
Sbjct: 827 FNMLISKCCANGEINWAFDLVKVMTSLG--ISLDKDTCDAMVSVLNRNHRFQESRMVLHE 884
Query: 945 MIRKDGSPELSTFVHLIKGLIRVNKWEEAL-----QLSYSICHTDI 985
M ++ SPE ++ LI GL RV + A +++ IC ++
Sbjct: 885 MSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNV 930
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 211/762 (27%), Positives = 347/762 (45%), Gaps = 49/762 (6%)
Query: 231 YKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEAL 290
YK + Y +L+ + + + + + M+ S D + LC+ E
Sbjct: 119 YKHSVYSYASLLTLLINNGYVGVVFKIRLLMIK---SCDSVGDALYVLDLCRKMNKDERF 175
Query: 291 ELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRK 350
EL K + + Y +++ L L +E + M PN+ T+ ++ G +
Sbjct: 176 EL--KYKLIIGC--YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL 231
Query: 351 RQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVY 410
+ + +S ++ G P + SLI YC+ D A+K+ ++M G + V Y
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291
Query: 411 NILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNV 470
LI G+C + + A + +M + + ++ LCG+ + +A N+
Sbjct: 292 THLIHGLC------VARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNL 345
Query: 471 IREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCK 530
++EM G P+ TY+ +I LC + EKA L +M GL+P+V TY LI+ +CK
Sbjct: 346 VKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCK 405
Query: 531 AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVT 590
G+IE A + + M PN TY LI Y K+ +A + ML + +P++VT
Sbjct: 406 RGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVT 464
Query: 591 FTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKE-------------- 636
+ +LIDG C++G+ + A R+ + M + D Y ++D+ CK
Sbjct: 465 YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE 524
Query: 637 -----PNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLD 691
PNV Y ALIDG CK KV EAH +L+ M C PN++ ++ALI G C GKL
Sbjct: 525 QKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLK 584
Query: 692 EAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMI 751
EA ++ KM++ G P V T LI RL KD D A +ML P+ YT I
Sbjct: 585 EATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFI 644
Query: 752 DGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA 811
+ G+ +A +M M E G P++ TY+++I G+G +G+ + ++L++M GC
Sbjct: 645 QTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCE 704
Query: 812 PNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871
P+ T+ LI H LL+ + KQ + ++ EF + L+
Sbjct: 705 PSQHTFLSLIKH-----LLEMKYG-----KQKGSEPELCAMSNMM-----EFDTVVELLE 749
Query: 872 EMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL 931
+M + P +Y LI + G L VA ++ + M S + LL L
Sbjct: 750 KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKL 809
Query: 932 ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEA 973
+K ++A ++ DMI P+L + LI GL + + E
Sbjct: 810 -KKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERG 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 207/780 (26%), Positives = 358/780 (45%), Gaps = 73/780 (9%)
Query: 241 LIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGR---WKEALELIEKE- 296
L+ LR +RLD + VY+ M++ D T + C+AG K+ L EKE
Sbjct: 192 LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEF 251
Query: 297 --------------------EFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPN 336
VP Y +I GLC+ E+A LL M + +
Sbjct: 252 RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLD 311
Query: 337 VVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLS 396
T+ +L+ G L+ R K ++ M++ G P ++ I + G A L
Sbjct: 312 NHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFD 371
Query: 397 KMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQ 456
M G P Y LI G C +++ +EL EM +V++ V+
Sbjct: 372 GMIASGLIPQAQAYASLIEGYCREKNVRQG--YEL----LVEMKKRNIVISPYTYGTVVK 425
Query: 457 CLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIP 516
+C +G + AYN+++EM++ G P+ Y+ +I S A + +EMK G+ P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485
Query: 517 DVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELF 576
D++ Y LI KA +++AR++ EMV+ G PN TY A I Y++A + + A++
Sbjct: 486 DIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYV 545
Query: 577 ETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARM--KG-----------------N 617
+ M G +PN V T LI+ +CK G + AC Y M +G N
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605
Query: 618 AEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVY 677
++ D + FR + P+V++YG LI+G K+ +++A + D M G PN I+Y
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIY 665
Query: 678 DALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLE 737
+ L+ GFC+ G++++A+ + +M G +PN TY ++ID K L A ++ +M
Sbjct: 666 NMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKL 725
Query: 738 DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDK 797
P+ +YT ++DG ++ E A + +KGC + + A+I+ K GK +
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITI-FGTNKKGCASSTAPFNALINWVFKFGKTEL 784
Query: 798 CLELLRQMS----SKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYR 853
E+L ++ + PN VTY ++I++ C G L+ A L +M+ V Y
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844
Query: 854 KVIEGFSREFIVSLGLVNEM----GKTDSVPIVP---AYRILIDHYIKAGRLEVALELHE 906
++ G+ + +G EM + + I P Y ++I+ ++K G AL L +
Sbjct: 845 SLLNGYDK-----MGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVD 899
Query: 907 EMTSFSSNSA-----ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLI 961
+M F+ N+ S ++ L+ + +++ A ++ +M+R P+ +T + LI
Sbjct: 900 QM--FAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 213/749 (28%), Positives = 338/749 (45%), Gaps = 43/749 (5%)
Query: 238 YNALIQVFLRADRLDTAYLVYREML-DAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKE 296
++ LIQ ++R+ R+ LV++ M+ + TL + L K + A+EL
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218
Query: 297 EFV---PDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQL 353
V PD +YT +I LCE A +++ M A C N+V + +L+ G +K+++
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278
Query: 354 GRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNIL 413
+ + + P + +L++ C+ ++ +++ +M F P + L
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSL 338
Query: 414 IGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIRE 473
+ E L E A +++ GV N + + LC K+ +A +
Sbjct: 339 V------EGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDR 392
Query: 474 MMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGL 533
M G P+ TYS +I C + + A EM GL VY Y LI+ CK G
Sbjct: 393 MGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGD 452
Query: 534 IEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTA 593
I A + EM+ + +P VVTYT+L+ Y K ++A L+ M KG P+I TFT
Sbjct: 453 ISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTT 512
Query: 594 LIDGHCKAGDIERACRIYARM----------------KGNAEISDVDIYFRVLDNNCKE- 636
L+ G +AG I A +++ M +G E D+ F L ++
Sbjct: 513 LLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG 572
Query: 637 --PNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQ 694
P+ Y+Y LI GLC + EA +D + CE N I Y L+ GFC+ GKL+EA
Sbjct: 573 IVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEAL 632
Query: 695 MVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754
V +M++ G + ++ YG LID K K L ++ +M + P+ VIYT MID
Sbjct: 633 SVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAK 692
Query: 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNF 814
K G +EA+ + +M +GC PN VTYTA+I+G K G V++ L +M PN
Sbjct: 693 SKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQ 752
Query: 815 VTYRVLINHCCASGLLD-----EAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG- 868
VTY ++ G +D E HN + +K T A Y +I GF R+ +
Sbjct: 753 VTYGCFLD-ILTKGEVDMQKAVELHNAI--LKGLLANT--ATYNMLIRGFCRQGRIEEAS 807
Query: 869 -LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIE 927
L+ M P Y +I+ + ++ A+EL MT R + LI
Sbjct: 808 ELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMT--EKGIRPDRVAYNTLIH 865
Query: 928 SLSLARKIDKAFELYVDMIRKDGSPELST 956
+A ++ KA EL +M+R+ P T
Sbjct: 866 GCCVAGEMGKATELRNEMLRQGLIPNNKT 894
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/587 (27%), Positives = 287/587 (48%), Gaps = 33/587 (5%)
Query: 208 HKCCRNGFWNVALEE----LGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLD 263
K RN ++ L++ G + P+ +N L+ + ++ D + M +
Sbjct: 49 EKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQN 108
Query: 264 AGFSMDGFTLGCFAYSLCKAGRWKEALELIEKE---EFVPDTVLYTKMISGLCEASLFEE 320
S D ++ C+ + AL ++ K + PD V + +++G C E
Sbjct: 109 LRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISE 168
Query: 321 AMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIH 380
A+ L+++M PN VTF L+ G + ++ M+ GC P + ++++
Sbjct: 169 AVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 228
Query: 381 AYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEML 440
C+ GD A LL KM K + V+Y +I +C +++ +D L + EM
Sbjct: 229 GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNV--NDALNL----FTEMD 282
Query: 441 NAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAE 500
N G+ N + ++ ++CLC G++ A ++ +M+ + P+ T+S +I +
Sbjct: 283 NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 342
Query: 501 KAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALI 560
+A L+ EM + + PD++TY+ LI+ FC +++A++ F+ M+ + C PNVVTY LI
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402
Query: 561 HAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEI 620
+ KA++ + ELF M +G + N VT+ LI G +AGD + A +I+ +M +
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 462
Query: 621 SDVDIYFRVLDNNCK-------------------EPNVYTYGALIDGLCKVHKVREAHDL 661
D+ Y +LD CK EP++YTY +I+G+CK KV + DL
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522
Query: 662 LDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK 721
++S+ G +PN I+Y +I GFC+ G +EA +F +M E G PN TY +LI +
Sbjct: 523 FCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582
Query: 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVML 768
D + ++I +M + + + M+ ++ G+ E++Y ML
Sbjct: 583 DGDKAASAELIKEMRSCGFVGDASTIS-MVINMLHDGRLEKSYLEML 628
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (684), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/553 (30%), Positives = 274/553 (49%), Gaps = 25/553 (4%)
Query: 291 ELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILL-CGCLR 349
++++ F P V + K++S + + + FE + L +M+ ++ T+ I + C C R
Sbjct: 73 DMVKSRPF-PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFC-R 130
Query: 350 KRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVV 409
+ QL VL+ M+ G P SL++ YC S S A L+ +M + G++P
Sbjct: 131 RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFT 190
Query: 410 YNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYN 469
+ LI G+ + AS+ L + +M+ G + + V LC G + A +
Sbjct: 191 FTTLIHGLFLHN--KASEAVALVD----QMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244
Query: 470 VIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFC 529
++++M D Y+ +I LC + A LF EM G+ PDV+TY+ LI C
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLC 304
Query: 530 KAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIV 589
G A +M++ +PNVVT++ALI A++K K +A +L++ M+ + P+I
Sbjct: 305 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 364
Query: 590 TFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGL 649
T+++LI+G C ++ A ++ M + +C PNV TY LI G
Sbjct: 365 TYSSLINGFCMHDRLDEAKHMFELM---------------ISKDCF-PNVVTYSTLIKGF 408
Query: 650 CKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNV 709
CK +V E +L MS G N + Y LI GF + D AQMVF +M+ G +PN+
Sbjct: 409 CKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNI 468
Query: 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLM 769
TY L+D L K+ +L A+ V + + P++ Y MI+G+ K GK E+ +++
Sbjct: 469 LTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCN 528
Query: 770 MEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGL 829
+ KG PNV+ Y MI GF + G ++ LL++M G PN TY LI G
Sbjct: 529 LSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588
Query: 830 LDEAHNLLEEMKQ 842
+ + L++EM+
Sbjct: 589 REASAELIKEMRS 601
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 173/598 (28%), Positives = 272/598 (45%), Gaps = 48/598 (8%)
Query: 294 EKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQL 353
+K F P+ LY +++ L + F++ +L M++ C TF IL+ +
Sbjct: 75 KKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQ 134
Query: 354 GRCKRVLSMMITE-GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNI 412
V+ MI E G P ++ +++ +KM G +P +N+
Sbjct: 135 DEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNV 194
Query: 413 LIGGICGN----------EDLPA------SDVFELAEKAYAE-------------MLNAG 443
LI +C ED+P+ F + Y E M+ G
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254
Query: 444 VVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSK-GFIPDTSTYSKVIGYLCDASEAEKA 502
+ ++V+ V C G+ E A N I+EM ++ GF PD T++ ++ LC A + A
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHA 314
Query: 503 FLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHA 562
+ M + G PDVYTY +I CK G +++A D+M+ C PN VTY LI
Sbjct: 315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIST 374
Query: 563 YLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISD 622
K + +A EL + SKG +P++ TF +LI G C + A ++ M+
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG---- 430
Query: 623 VDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALID 682
C EP+ +TY LID LC K+ EA ++L M + GC + I Y+ LID
Sbjct: 431 -----------C-EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 683 GFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAP 742
GFCK K EA+ +F +M HG + N TY +LID L K +R++ A +++ +M+ + P
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538
Query: 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELL 802
+ Y ++ + G ++A ++ M GC P++VTY +I G K G+V+ +LL
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598
Query: 803 RQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEM-KQTYWPTHVAGYRKVIEGF 859
R + KG Y +I EA NL EM +Q P YR V G
Sbjct: 599 RSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGL 656
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 997 | ||||||
| 225433790 | 1045 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.937 | 0.731 | 0.0 | |
| 297745184 | 996 | unnamed protein product [Vitis vinifera] | 0.968 | 0.969 | 0.739 | 0.0 | |
| 147833287 | 1010 | hypothetical protein VITISV_041111 [Viti | 0.955 | 0.943 | 0.737 | 0.0 | |
| 449446442 | 1000 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.986 | 0.673 | 0.0 | |
| 449499490 | 1000 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.986 | 0.671 | 0.0 | |
| 356540349 | 1024 | PREDICTED: pentatricopeptide repeat-cont | 0.950 | 0.925 | 0.663 | 0.0 | |
| 357481045 | 1084 | Pentatricopeptide repeat-containing prot | 0.939 | 0.864 | 0.668 | 0.0 | |
| 334182346 | 997 | pentatricopeptide repeat-containing prot | 0.966 | 0.966 | 0.647 | 0.0 | |
| 75191658 | 987 | RecName: Full=Pentatricopeptide repeat-c | 0.951 | 0.961 | 0.652 | 0.0 | |
| 55709857 | 946 | hypothetical protein [Arabidopsis thalia | 0.938 | 0.989 | 0.657 | 0.0 |
| >gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1515 bits (3922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/992 (73%), Positives = 851/992 (85%), Gaps = 12/992 (1%)
Query: 9 LSSLIFSSKSFIFSHPNQFSRQNFLPAVTRFICTSPPDD-LHGLFDPDDPFSTG-CSPVE 66
LS+ + + F S P + S ++RFICTS +D LHGL D D FS S VE
Sbjct: 10 LSNSLPMTTHFFASKPFKIS------TISRFICTSSSEDNLHGLVDSD--FSVPESSRVE 61
Query: 67 SVSSEDFAFLRDSLMNPSA--ADSVPNFDAGRCSNDAVMIANTLLTNNDGFGGNTQKFLR 124
S +E+FAFLRDSL+ + SV +GRCSNDAV+I++ + DGFG TQKFLR
Sbjct: 62 SFLAEEFAFLRDSLLETGSDTGASVNKSVSGRCSNDAVLISDVIRNTGDGFGHKTQKFLR 121
Query: 125 QFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVP 184
QFREKL+E+LVV+VL+L+K PELGVKFF+WAGRQIGY HT PVY+AL+E++ C +DRVP
Sbjct: 122 QFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVP 181
Query: 185 EQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQV 244
EQFLREI +EDKE+LGKLLNVLI KCCRNG WNVALEELGRLKD GYKP++ YNAL++V
Sbjct: 182 EQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRV 241
Query: 245 FLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVL 304
FL ADRLDTAYLV+REM D+GF+MDG+TLGCF + LCKAGRW+EAL LIEKEEF DTV+
Sbjct: 242 FLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVI 301
Query: 305 YTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMI 364
YT+MISGLCEASLFEEAMD L+RMR+ SCIPNVVT+RILLCGCLRKRQLGRCKR+LSMMI
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361
Query: 365 TEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLP 424
TEGCYPS RIF+SLIHAYCRSGDYSYAYKLL KM CG QPGYVVYNILIGGICGNE LP
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421
Query: 425 ASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTS 484
+ DV ELAEKAY EML+A VVLNK+NVSN +CLCGAGK+EKAY++IREMMSKGFIPDTS
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481
Query: 485 TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEM 544
TYSKVIG LC+AS+ + AFLLF+EMK N ++PDV+TYTILID+FCK GL++QAR WFDEM
Sbjct: 482 TYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEM 541
Query: 545 VKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDI 604
V++GC PNVVTYTALIHAYLKARK S ANELFE MLS+GCIPN+VT+TALIDGHCK+G I
Sbjct: 542 VRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQI 601
Query: 605 ERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDA 664
E+AC+IYARM+GNA+I DVD+YF++ D N ++PN++TYGAL+DGLCK HKV+EA DLLD
Sbjct: 602 EKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDV 661
Query: 665 MSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR 724
MSV GCEPN+IVYDALIDGFCKVGKLDEAQMVF+KM E G PNVYTY SLIDRLFKDKR
Sbjct: 662 MSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKR 721
Query: 725 LDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA 784
LDLALKV+S+MLE+S APNV+IYTEMIDGL KVGKT+EAY++M MMEEKGC+PNVVTYTA
Sbjct: 722 LDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA 781
Query: 785 MIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTY 844
MIDGFGK GKVDKCLEL+RQM +KGCAPNFVTYRVLINHCCA+GLLD+AH LL+EMKQTY
Sbjct: 782 MIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTY 841
Query: 845 WPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALEL 904
WP H+AGYRKVIEGF+REFI+SLGL++E+ + +VPI+PAYRILID + KAGRLE+ALEL
Sbjct: 842 WPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALEL 901
Query: 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL 964
H+EM+S +S SAA ++ LIESLSLA K+DKAFELY DMI++ G PELS F +L+KGL
Sbjct: 902 HKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGL 961
Query: 965 IRVNKWEEALQLSYSICHTDINWLQEEERSSS 996
IR+N+WEEALQLS IC +++++E SS
Sbjct: 962 IRINRWEEALQLSDCICQMMVDFVREGFLGSS 993
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1511 bits (3913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 723/978 (73%), Positives = 843/978 (86%), Gaps = 12/978 (1%)
Query: 9 LSSLIFSSKSFIFSHPNQFSRQNFLPAVTRFICTSPPDD-LHGLFDPDDPFSTG-CSPVE 66
LS+ + + F S P + S ++RFICTS +D LHGL D D FS S VE
Sbjct: 10 LSNSLPMTTHFFASKPFKIS------TISRFICTSSSEDNLHGLVDSD--FSVPESSRVE 61
Query: 67 SVSSEDFAFLRDSLMNPSA--ADSVPNFDAGRCSNDAVMIANTLLTNNDGFGGNTQKFLR 124
S +E+FAFLRDSL+ + SV +GRCSNDAV+I++ + DGFG TQKFLR
Sbjct: 62 SFLAEEFAFLRDSLLETGSDTGASVNKSVSGRCSNDAVLISDVIRNTGDGFGHKTQKFLR 121
Query: 125 QFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVP 184
QFREKL+E+LVV+VL+L+K PELGVKFF+WAGRQIGY HT PVY+AL+E++ C +DRVP
Sbjct: 122 QFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVP 181
Query: 185 EQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQV 244
EQFLREI +EDKE+LGKLLNVLI KCCRNG WNVALEELGRLKD GYKP++ YNAL++V
Sbjct: 182 EQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRV 241
Query: 245 FLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVL 304
FL ADRLDTAYLV+REM D+GF+MDG+TLGCF + LCKAGRW+EAL LIEKEEF DTV+
Sbjct: 242 FLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVI 301
Query: 305 YTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMI 364
YT+MISGLCEASLFEEAMD L+RMR+ SCIPNVVT+RILLCGCLRKRQLGRCKR+LSMMI
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361
Query: 365 TEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLP 424
TEGCYPS RIF+SLIHAYCRSGDYSYAYKLL KM CG QPGYVVYNILIGGICGNE LP
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421
Query: 425 ASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTS 484
+ DV ELAEKAY EML+A VVLNK+NVSN +CLCGAGK+EKAY++IREMMSKGFIPDTS
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481
Query: 485 TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEM 544
TYSKVIG LC+AS+ + AFLLF+EMK N ++PDV+TYTILID+FCK GL++QAR WFDEM
Sbjct: 482 TYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEM 541
Query: 545 VKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDI 604
V++GC PNVVTYTALIHAYLKARK S ANELFE MLS+GCIPN+VT+TALIDGHCK+G I
Sbjct: 542 VRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQI 601
Query: 605 ERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDA 664
E+AC+IYARM+GNA+I DVD+YF++ D N ++PN++TYGAL+DGLCK HKV+EA DLLD
Sbjct: 602 EKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDV 661
Query: 665 MSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR 724
MSV GCEPN+IVYDALIDGFCKVGKLDEAQMVF+KM E G PNVYTY SLIDRLFKDKR
Sbjct: 662 MSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKR 721
Query: 725 LDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA 784
LDLALKV+S+MLE+S APNV+IYTEMIDGL KVGKT+EAY++M MMEEKGC+PNVVTYTA
Sbjct: 722 LDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA 781
Query: 785 MIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTY 844
MIDGFGK GKVDKCLEL+RQM +KGCAPNFVTYRVLINHCCA+GLLD+AH LL+EMKQTY
Sbjct: 782 MIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTY 841
Query: 845 WPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALEL 904
WP H+AGYRKVIEGF+REFI+SLGL++E+ + +VPI+PAYRILID + KAGRLE+ALEL
Sbjct: 842 WPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALEL 901
Query: 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL 964
H+EM+S +S SAA ++ LIESLSLA K+DKAFELY DMI++ G PELS F +L+KGL
Sbjct: 902 HKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGL 961
Query: 965 IRVNKWEEALQLSYSICH 982
IR+N+WEEALQLS IC
Sbjct: 962 IRINRWEEALQLSDCICQ 979
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1490 bits (3857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/965 (73%), Positives = 832/965 (86%), Gaps = 12/965 (1%)
Query: 9 LSSLIFSSKSFIFSHPNQFSRQNFLPAVTRFICTSPPDD-LHGLFDPDDPFSTG-CSPVE 66
LS+ + + F S P + S ++RFICTS +D LHGL D D FS S VE
Sbjct: 10 LSNSLPMTTHFFASKPFKIS------TISRFICTSSSEDNLHGLVDSD--FSVPESSRVE 61
Query: 67 SVSSEDFAFLRDSLMNPSA--ADSVPNFDAGRCSNDAVMIANTLLTNNDGFGGNTQKFLR 124
S +E+FAFLRDSL+ + SV +GRCSNDAV+I++ + DGFG TQKFLR
Sbjct: 62 SFLAEEFAFLRDSLLETGSDTGASVNKSVSGRCSNDAVLISDVIRNTGDGFGHKTQKFLR 121
Query: 125 QFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVP 184
QFREKL+E+LVV+VL+L+K PELGVKFF+WAGRQIGY HT PVY+AL+E++ C +DRVP
Sbjct: 122 QFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVP 181
Query: 185 EQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQV 244
EQFLREI +EDKE+LGKLLNVLI KCCRNG WNVALEELGRLKD GYKP++ YNAL++V
Sbjct: 182 EQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRV 241
Query: 245 FLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVL 304
FL ADRLDTAYLV+REM D+GF+MDG+TLGCF + LCKAGRW+EAL LIEKEEF DTV+
Sbjct: 242 FLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVI 301
Query: 305 YTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMI 364
YT+MISGLCEASLFEEAMD L+RMR+ SCIPNVVT+RILLCGCLRKRQLGRCKR+LSMMI
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361
Query: 365 TEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLP 424
TEGCYPS RIF+SLIHAYCRSGDYSYAYKLL KM CG QPGYVVYNILIGGICGNE LP
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421
Query: 425 ASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTS 484
+ DV ELAEKAY EML+A VVLNK+NVSN +CLCGAGK+EKAY++IREMMSKGFIPDTS
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481
Query: 485 TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEM 544
TYSKVIG LC+AS+ + AFLLF+EMK N ++PDV+TYTILID+FCK GL++QAR WFDEM
Sbjct: 482 TYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEM 541
Query: 545 VKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDI 604
V++GC PNVVTYTALIHAYLKARK S ANELFE MLS+GCIPN+VT+TALIDGHCK+G I
Sbjct: 542 VRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQI 601
Query: 605 ERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDA 664
E+AC+IYARM+GNA+I DVD+YF++ D N ++PN++TYGAL+DGLCK HKV+EA DLLD
Sbjct: 602 EKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDV 661
Query: 665 MSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR 724
MSV GCEPN+IVYDALIDGFCKVGKLDEAQMVF+KM E G PNVYTY SLIDRLFKDKR
Sbjct: 662 MSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKR 721
Query: 725 LDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA 784
LDLALKV+S+MLE+S APNV+IYTEMIDGL KVGKT+EAY++M MMEEKGC+PNVVTYTA
Sbjct: 722 LDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA 781
Query: 785 MIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTY 844
MIDGFGK GKVDKCLEL+RQM +KGCAPNFVTYRVLINHCCA+GLLD+AH LL+EMKQTY
Sbjct: 782 MIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTY 841
Query: 845 WPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALEL 904
WP H+AGYRKVIEGF+REFI+SLGL++E+ + +VPI+PAYRILID + KAGRLE+ALEL
Sbjct: 842 WPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALEL 901
Query: 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL 964
H+ M+S +S SAA ++ LIESLSLA K+DKAFELY DMI++ G PELS F +L+KGL
Sbjct: 902 HKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGL 961
Query: 965 IRVNK 969
IR+N+
Sbjct: 962 IRINR 966
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1377 bits (3563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/997 (67%), Positives = 791/997 (79%), Gaps = 11/997 (1%)
Query: 7 KTLSSLIFSSKSFIFS--HPNQFSRQNFLPAVTR-----FICTSPPDDLHGLFDPDDPFS 59
+ L SL F S SFI S N F N P + TS PDDL GL DPD S
Sbjct: 4 RGLKSLHFLSFSFISSPIRSNSFFSSNPFPIYSHSSPFAHFSTSSPDDLPGLVDPDQSLS 63
Query: 60 TGCSPVESVSSEDFAFLRDSLMNPSAADSVPN---FDAGRCSNDAVMIANTLLTNNDGFG 116
+ S V+ S ++ + LRDSL++ S ADS + + SN+A +I + + +DGFG
Sbjct: 64 SDTSRVQCFSPQEVSLLRDSLLD-SHADSCSSHRTLQTVKISNEAFLILDAVRNCDDGFG 122
Query: 117 GNTQKFLRQFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIME 176
T LRQFR+KL+ LVV +L+ +K PEL VKFFLWAGRQIGY HTP VY AL+++ E
Sbjct: 123 EKTHIVLRQFRQKLNPDLVVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFE 182
Query: 177 CDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQA 236
DRVPE+FLREI +DKEVLGKLLNVLI KCCRNG WNVALEELGRLKDFGYKPT+
Sbjct: 183 RGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRM 242
Query: 237 IYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKE 296
YNAL+QVFLRAD+LDTA LV+REM + G SMD FTLG FA +LCK G+W+EAL LIEKE
Sbjct: 243 TYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKE 302
Query: 297 EFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRC 356
+FVP+T+LY KMISGLCEAS FEEAMD LNRMR+ SCIPNV T+RILLCGCL K+QLGRC
Sbjct: 303 DFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRC 362
Query: 357 KRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGG 416
KR+LSMMI EGCYPS IF+SL+HAYC+S D+SYAYKLL KM KC +PGYVVYNILIG
Sbjct: 363 KRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGS 422
Query: 417 ICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMS 476
IC +LP FELAEKAY EML+AG VLNK+NV +F +CLCG GK+EKAY VI EMM
Sbjct: 423 ICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMG 482
Query: 477 KGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQ 536
GF+PDTSTYS+VIG+LC+AS E AF LF+EMK G++PDVYTYTILID F KAG+I+Q
Sbjct: 483 NGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQ 542
Query: 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALID 596
A NW DEMV++GC+P VVTYT LIHAYLKA+K S ANELFE M++KGC PN++T+TALID
Sbjct: 543 AHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALID 602
Query: 597 GHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVR 656
G+CK+G+IE+AC+IYARM+G+A+I DVD+YF++ +N ++PNV TYGAL+DGLCK HKV+
Sbjct: 603 GYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVK 662
Query: 657 EAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLI 716
+A DLL+ M V GCEPN IVYDALIDGFCK KLDEAQ VF KM+EHG NPNVYTY SLI
Sbjct: 663 DARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLI 722
Query: 717 DRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY 776
DRLFKDKRLDL LKV+SKMLE+S APN+VIYTEMIDGL KV KT+EAYK+MLMMEEKGC
Sbjct: 723 DRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCK 782
Query: 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNL 836
PNVVTYTAMIDGFGK GKVDKCLEL R+M SKGCAPNFVTY VLINHCCA+G LDEA+ L
Sbjct: 783 PNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYAL 842
Query: 837 LEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896
LEEMKQTYWP HV+ Y KVIEG+ REFI+SLGL+ E+ K S PI+ Y++LID+++KAG
Sbjct: 843 LEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAG 902
Query: 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELST 956
RLEVALELH+E+ S S + AA +N LI S S A KI AFEL+ DMIR P+L T
Sbjct: 903 RLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGT 962
Query: 957 FVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEEER 993
FVHL+ GLIRV +WEEALQLS S+C DINWL+ E++
Sbjct: 963 FVHLLMGLIRVRRWEEALQLSDSLCQMDINWLRREDK 999
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1373 bits (3555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 669/997 (67%), Positives = 789/997 (79%), Gaps = 11/997 (1%)
Query: 7 KTLSSLIFSSKSFIFS--HPNQFSRQNFLPAVTR-----FICTSPPDDLHGLFDPDDPFS 59
+ L SL F S SFI S N F N P + TS PDDL GL DPD S
Sbjct: 4 RGLKSLHFLSFSFISSPIRSNSFFSSNPFPIYSHSSPFAHFSTSSPDDLPGLVDPDQSLS 63
Query: 60 TGCSPVESVSSEDFAFLRDSLMNPSAADSVPN---FDAGRCSNDAVMIANTLLTNNDGFG 116
+ S V+ S ++ + LRDSL++ S ADS + + SN+A +I + + +DGFG
Sbjct: 64 SDTSRVQCFSPQEVSLLRDSLLD-SHADSCSSHRTLQTVKISNEAFLILDAIRNCDDGFG 122
Query: 117 GNTQKFLRQFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIME 176
T LRQFR+KL+ LVV +L+ +K PEL VKFFLWAGRQIGY HTP VY AL+++ E
Sbjct: 123 EKTHIVLRQFRQKLNPDLVVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFE 182
Query: 177 CDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQA 236
DRVPE+FLREI +DKEVLGKLLNVLI KCCRNG WNVALEELGRLKDFGYKPT+
Sbjct: 183 RGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRM 242
Query: 237 IYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKE 296
YNAL+QVFLRAD+LDTA LV+REM + G SMD FTLG FA +LCK G+W+EAL LIEKE
Sbjct: 243 TYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKE 302
Query: 297 EFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRC 356
+FVP+T+LY KMISGLCEAS FEEAMD LNRMR+ SCIPNV T+RILLCGCL K+QLGRC
Sbjct: 303 DFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRC 362
Query: 357 KRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGG 416
KR+LSMMI EGCYPS IF+SL+HAYC+S D+SYAYKLL KM KC +PGYVVYNILIG
Sbjct: 363 KRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGS 422
Query: 417 ICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMS 476
IC +LP FELAEKAY EML+AG VLNK+NV +F +CLCG GK+EKAY VI EMM
Sbjct: 423 ICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMG 482
Query: 477 KGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQ 536
GF+PDTSTYS+VIG+LC+AS E AF LF+EMK G++PDVYTYTILID F KAG+I+Q
Sbjct: 483 NGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQ 542
Query: 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALID 596
A NW DEMV++GC+P VVTYT LIHAYLKA+K S ANELFE M++KGC PN++T+TALID
Sbjct: 543 AHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALID 602
Query: 597 GHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVR 656
G+CK+G+IE+AC+IYARM+G+A+I DVD+YF++ +N ++PNV TYGAL+DGLCK HKV+
Sbjct: 603 GYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVK 662
Query: 657 EAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLI 716
+A DLL+ M V GCEPN IVYDALIDGFCK KLDEAQ VF KM+E G NPNVYTY SLI
Sbjct: 663 DARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLI 722
Query: 717 DRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY 776
DRLFKDKRLDL LKV+SKMLE+S APN+VIYTEMIDGL KV KT+EAYK+MLMMEEKGC
Sbjct: 723 DRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCK 782
Query: 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNL 836
PNVVTYTAMIDGFGK GKVDKCLEL R+M SKGCAPNFVTY VLINHCCA+G LDEA+ L
Sbjct: 783 PNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYAL 842
Query: 837 LEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896
LEEMKQTYWP HV+ Y KVIEG+ REFI+SLGL+ E+ K S P + Y++LID+++KAG
Sbjct: 843 LEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAG 902
Query: 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELST 956
RLEVALELH+E+ S S + A +N LI S S A KID AFEL+ DMIR P+L T
Sbjct: 903 RLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGT 962
Query: 957 FVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEEER 993
FVHL+ GLIRV +WEEALQLS S+C DINWL+ E++
Sbjct: 963 FVHLLMGLIRVRRWEEALQLSDSLCQMDINWLRREDK 999
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1347 bits (3486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/986 (66%), Positives = 793/986 (80%), Gaps = 38/986 (3%)
Query: 1 MSKAKLKTLSSLIFSSKSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFST 60
M K +L +L+S +S F P FS +S L GL P++
Sbjct: 1 MRKRELNSLAS-----RSLQFLKPKPFST------------SSSHHPLPGLLPPEET--- 40
Query: 61 GCSPVESVS--SEDFAFLRDSLMNPSAADSVPNFDAGRCSNDAVMIANTLLTNNDGFGGN 118
SP++S S+ +AFLR SL+N + + SNDA+ I+N + T GFG
Sbjct: 41 --SPLDSSPDLSQHYAFLRTSLLNSATTQT---------SNDALSISNAIRT---GFGAE 86
Query: 119 TQKFLRQFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECD 178
TQ FLRQFR +LSE LVV V+NL+K PE V+FFLWA RQIGYSHTP VYNAL+E++ C+
Sbjct: 87 TQNFLRQFRGRLSEPLVVEVMNLVKHPEFCVEFFLWASRQIGYSHTPVVYNALIELLCCN 146
Query: 179 --HDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQA 236
++DRV +FL +I ++D+E+L KLLN LI KCCRNG WNVALEELGRLKDFGYK +
Sbjct: 147 AVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELGRLKDFGYKASPT 206
Query: 237 IYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKE 296
YNALIQVFLRAD+LDTA+LV+REM ++GF MDG TLGCFAYSLCKAGR +AL L+EKE
Sbjct: 207 TYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEKE 266
Query: 297 EFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRC 356
EFVPDTV Y +M+SGLCEASLF+EAMD+L+RMR+ SCIPNVVT+RILL GCL K QLGRC
Sbjct: 267 EFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRC 326
Query: 357 KRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGG 416
KR+LSMM+TEGCYP+ +F+SL+HAYC+S DYSYAYKL KM KCG QPGY++YNI IG
Sbjct: 327 KRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGS 386
Query: 417 ICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMS 476
IC NE+LP SD+ ELAEKAY+EML+ GVVLNK+NVSNF +CLCGAGK++KA+ +I EMMS
Sbjct: 387 ICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMS 446
Query: 477 KGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQ 536
KGF+PD STYSKVIG+LCDAS+ EKAFLLF+EMK+NG++P VYTYTILID+FCKAGLI+Q
Sbjct: 447 KGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQ 506
Query: 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALID 596
ARNWFDEM+++ C PNVVTYT+LIHAYLKARK AN+LFE ML +G PN+VT+TALID
Sbjct: 507 ARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALID 566
Query: 597 GHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVR 656
GHCKAG I++AC+IYARM+G+ E SD+D+YF++ DN+C+ PN+ TYGAL+DGLCK ++V
Sbjct: 567 GHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVE 626
Query: 657 EAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLI 716
EAH+LLD MSV GCEPN IVYDALIDGFCK GKL+ AQ VF KM E G PN+YTY SLI
Sbjct: 627 EAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLI 686
Query: 717 DRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY 776
+ LFK+KRLDL LKV+SKMLE+S PNVVIYT+MIDGL KVGKTEEAY++ML MEE GCY
Sbjct: 687 NSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCY 746
Query: 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNL 836
PNV+TYTAMIDGFGK+GK+++CLEL R M SKGCAPNF+TYRVLINHCC++GLLDEAH L
Sbjct: 747 PNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRL 806
Query: 837 LEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896
L+EMKQTYWP H++ YRK+IEGF+REFI S+GL++E+ + +SVP+ YRILID++IKAG
Sbjct: 807 LDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIKAG 866
Query: 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELST 956
RLE AL L EE++S S + A++ LIESLS A K+DKAFELY MI K+ PELST
Sbjct: 867 RLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELST 926
Query: 957 FVHLIKGLIRVNKWEEALQLSYSICH 982
FVHLIKGL RV KW+EALQLS SIC
Sbjct: 927 FVHLIKGLTRVGKWQEALQLSDSICQ 952
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1328 bits (3436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/947 (66%), Positives = 777/947 (82%), Gaps = 10/947 (1%)
Query: 48 LHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAADSVPNFDAGRCSNDAVMIANT 107
LHGL P+D + +P S+D+AFLR++L+N ++ S P+ +DA+ +
Sbjct: 29 LHGLHHPNDSTFSPSTPTPRDLSQDYAFLRNTLINSTSPQSTPSS-----GDDAISTISK 83
Query: 108 LLTNNDGFGGNTQKFLRQFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPV 167
L GF T +F RQFR +L++SLVV V+N +K PEL VKFFLWAGRQIGYSHTP V
Sbjct: 84 ALKT--GFNIETHQFFRQFRNQLNDSLVVEVMNNVKNPELCVKFFLWAGRQIGYSHTPQV 141
Query: 168 YNALVEIMECD--HDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGR 225
++ L++++ C+ DDRVP +FL EI ++D E+L +LLN L+ KCCRNG+WN+ALEELGR
Sbjct: 142 FDKLLDLLGCNVNADDRVPLKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGR 201
Query: 226 LKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGR 285
LKDFGYKP+Q YNALIQVFLRAD+LDTAYLV REML F MD +TL CFAYSLCK G+
Sbjct: 202 LKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGK 261
Query: 286 WKEALELI-EKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILL 344
+EA +LI E E+FVPDTV Y +M+SGLCEASLFEEAMD+L+RMR+ SCIPNVVT+RILL
Sbjct: 262 CREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILL 321
Query: 345 CGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQ 404
GCLRK QLGRCKR+LSMMITEGCYP+ IF+SLIHAYC+S DYSYAYKL KM KCG Q
Sbjct: 322 SGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQ 381
Query: 405 PGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKY 464
PGY+VYNI IG +C NE+ P+SD+ +L EKAY+EML+ GVVLNK+NVSNF +CLCGAGK+
Sbjct: 382 PGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKF 441
Query: 465 EKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTIL 524
++A+ +I EMM KGF+PD STYSKVIG+LCDAS+ EKAF LF+EMKRNG++P VYTYTIL
Sbjct: 442 DQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTIL 501
Query: 525 IDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGC 584
ID+FCKAGLI+QAR WFDEM+ +GC PNVVTYTALIHAYLKA++ A+ELFE ML +GC
Sbjct: 502 IDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGC 561
Query: 585 IPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGA 644
PN+VT+TALIDGHCKAG IE+AC+IYARM+G+ E SD+D YF++ NNC+ PNV TYGA
Sbjct: 562 KPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGA 621
Query: 645 LIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHG 704
L+DGLCK ++V+EAH+LLD M GCEPN IVYDA+IDGFCK+GKL +AQ VF+KM E G
Sbjct: 622 LVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERG 681
Query: 705 CNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAY 764
+PN+YTY S ID LFKD RLDL LKV+SKMLE+S PNVVIYTEM+DGL K+GKT+EAY
Sbjct: 682 YSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAY 741
Query: 765 KVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHC 824
K+ML MEEKGC PNVVTYTAMIDGFGK GK+++CLEL R M SKGCAPNF+TYRVLINHC
Sbjct: 742 KLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHC 801
Query: 825 CASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPA 884
C++GLLDEA+ LL+EMKQTYWP H+ +RK+IEGFS+EFI S+GL++E+ + +SVP+
Sbjct: 802 CSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESVPVDSL 861
Query: 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVD 944
YRILID+YIKAGRLEVAL+L EE++S S++ +++ LIE+LS A K+DKA ELY
Sbjct: 862 YRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYAS 921
Query: 945 MIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEE 991
MI K+ PELS VHLIKGLI+V+KW+EALQLS SIC DI+WLQE+
Sbjct: 922 MISKNVVPELSILVHLIKGLIKVDKWQEALQLSDSICQMDIHWLQEK 968
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1302 bits (3369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/974 (64%), Positives = 773/974 (79%), Gaps = 10/974 (1%)
Query: 27 FSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLM---NP 83
F+ +L A RF+ T PPDD+ G DDPFS S +++++FL DSL+ N
Sbjct: 31 FTCSRYLTA--RFMSTPPPDDMFGF---DDPFSPSDSREVVDLTKEYSFLHDSLVDYGNV 85
Query: 84 SAADSVPNFDAGRCSNDAVMIANTLLTNNDGFGGNTQKFLRQFREKLSESLVVNVLNLIK 143
+ VP + S DA IA+ + +D FG +QKFLRQFREKLSESLV+ VL LI
Sbjct: 86 NVHQVVPIIT--QSSIDARAIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVLRLIA 143
Query: 144 KPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLL 203
+P + FF+WAGRQIGY HT PVYNALV+++ D D++VPE+FL++I ++DKEV G+ L
Sbjct: 144 RPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFL 203
Query: 204 NVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLD 263
NVL+ K CRNG +++ALEELGRLKDF ++P+++ YN LIQ FL+ADRLD+A L++REM
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263
Query: 264 AGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMD 323
A MDGFTL CFAYSLCK G+W+EAL L+E E FVPDTV YTK+ISGLCEASLFEEAMD
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMD 323
Query: 324 LLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYC 383
LNRMRA SC+PNVVT+ LLCGCL K+QLGRCKRVL+MM+ EGCYPSP+IF+SL+HAYC
Sbjct: 324 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYC 383
Query: 384 RSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAG 443
SGD+SYAYKLL KM KCG PGYVVYNILIG ICG++D D+ +LAEKAY+EML AG
Sbjct: 384 TSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAG 443
Query: 444 VVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAF 503
VVLNKINVS+F +CLC AGKYEKA++VIREM+ +GFIPDTSTYSKV+ YLC+AS+ E AF
Sbjct: 444 VVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAF 503
Query: 504 LLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY 563
LLF+EMKR GL+ DVYTYTI++D+FCKAGLIEQAR WF+EM + GC PNVVTYTALIHAY
Sbjct: 504 LLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAY 563
Query: 564 LKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDV 623
LKA+K S ANELFETMLS+GC+PNIVT++ALIDGHCKAG +E+AC+I+ RM G+ ++ DV
Sbjct: 564 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV 623
Query: 624 DIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDG 683
D+YF+ D+N + PNV TYGAL+DG CK H+V EA LLDAMS+ GCEPN IVYDALIDG
Sbjct: 624 DMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDG 683
Query: 684 FCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN 743
CKVGKLDEAQ V ++M EHG +YTY SLIDR FK KR DLA KV+SKMLE+S APN
Sbjct: 684 LCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743
Query: 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803
VVIYTEMIDGL KVGKT+EAYK+M MMEEKGC PNVVTYTAMIDGFG +GK++ CLELL
Sbjct: 744 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 803
Query: 804 QMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREF 863
+M SKG APN+VTYRVLI+HCC +G LD AHNLLEEMKQT+WPTH AGYRKVIEGF++EF
Sbjct: 804 RMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEF 863
Query: 864 IVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL 923
I SLGL++E+G+ D+ P + YR+LID+ IKA RLE+AL L EE+ +FS+ ++
Sbjct: 864 IESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYN 923
Query: 924 LLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHT 983
LIESL LA K++ AF+L+ +M +K PE+ +F LIKGL R +K EAL L I H
Sbjct: 924 SLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHM 983
Query: 984 DINWLQEEERSSST 997
+I W++E++ S T
Sbjct: 984 EIQWIEEKKTSDGT 997
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06710, mitochondrial; Flags: Precursor gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1286 bits (3328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/959 (65%), Positives = 763/959 (79%), Gaps = 10/959 (1%)
Query: 27 FSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLM---NP 83
F+ +L A RF+ T PPDD+ G DDPFS S +++++FL DSL+ N
Sbjct: 31 FTCSRYLTA--RFMSTPPPDDMFGF---DDPFSPSDSREVVDLTKEYSFLHDSLVDYGNV 85
Query: 84 SAADSVPNFDAGRCSNDAVMIANTLLTNNDGFGGNTQKFLRQFREKLSESLVVNVLNLIK 143
+ VP + S DA IA+ + +D FG +QKFLRQFREKLSESLV+ VL LI
Sbjct: 86 NVHQVVPIIT--QSSIDARAIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVLRLIA 143
Query: 144 KPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLL 203
+P + FF+WAGRQIGY HT PVYNALV+++ D D++VPE+FL++I ++DKEV G+ L
Sbjct: 144 RPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFL 203
Query: 204 NVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLD 263
NVL+ K CRNG +++ALEELGRLKDF ++P+++ YN LIQ FL+ADRLD+A L++REM
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263
Query: 264 AGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMD 323
A MDGFTL CFAYSLCK G+W+EAL L+E E FVPDTV YTK+ISGLCEASLFEEAMD
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMD 323
Query: 324 LLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYC 383
LNRMRA SC+PNVVT+ LLCGCL K+QLGRCKRVL+MM+ EGCYPSP+IF+SL+HAYC
Sbjct: 324 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYC 383
Query: 384 RSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAG 443
SGD+SYAYKLL KM KCG PGYVVYNILIG ICG++D D+ +LAEKAY+EML AG
Sbjct: 384 TSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAG 443
Query: 444 VVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAF 503
VVLNKINVS+F +CLC AGKYEKA++VIREM+ +GFIPDTSTYSKV+ YLC+AS+ E AF
Sbjct: 444 VVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAF 503
Query: 504 LLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY 563
LLF+EMKR GL+ DVYTYTI++D+FCKAGLIEQAR WF+EM + GC PNVVTYTALIHAY
Sbjct: 504 LLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAY 563
Query: 564 LKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDV 623
LKA+K S ANELFETMLS+GC+PNIVT++ALIDGHCKAG +E+AC+I+ RM G+ ++ DV
Sbjct: 564 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV 623
Query: 624 DIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDG 683
D+YF+ D+N + PNV TYGAL+DG CK H+V EA LLDAMS+ GCEPN IVYDALIDG
Sbjct: 624 DMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDG 683
Query: 684 FCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN 743
CKVGKLDEAQ V ++M EHG +YTY SLIDR FK KR DLA KV+SKMLE+S APN
Sbjct: 684 LCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743
Query: 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803
VVIYTEMIDGL KVGKT+EAYK+M MMEEKGC PNVVTYTAMIDGFG +GK++ CLELL
Sbjct: 744 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 803
Query: 804 QMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREF 863
+M SKG APN+VTYRVLI+HCC +G LD AHNLLEEMKQT+WPTH AGYRKVIEGF++EF
Sbjct: 804 RMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEF 863
Query: 864 IVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL 923
I SLGL++E+G+ D+ P + YR+LID+ IKA RLE+AL L EE+ +FS+ ++
Sbjct: 864 IESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYN 923
Query: 924 LLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICH 982
LIESL LA K++ AF+L+ +M +K PE+ +F LIKGL R +K EAL L I H
Sbjct: 924 SLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISH 982
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1282 bits (3318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/944 (65%), Positives = 755/944 (79%), Gaps = 8/944 (0%)
Query: 42 TSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLM---NPSAADSVPNFDAGRCS 98
T PPDD+ G DDPFS S +++++FL DSL+ N + VP + S
Sbjct: 3 TPPPDDMFGF---DDPFSPSDSREVVDLTKEYSFLHDSLVDYGNVNVHQVVPIIT--QSS 57
Query: 99 NDAVMIANTLLTNNDGFGGNTQKFLRQFREKLSESLVVNVLNLIKKPELGVKFFLWAGRQ 158
DA IA+ + +D FG +QKFLRQFREKLSESLV+ VL LI +P + FF+WAGRQ
Sbjct: 58 IDARAIADAVTGVDDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQ 117
Query: 159 IGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNV 218
IGY HT PVYNALV+++ D D++VPE+FL++I ++DKEV G+ LNVL+ K CRNG +++
Sbjct: 118 IGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGQFLNVLVRKHCRNGSFSI 177
Query: 219 ALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAY 278
ALEELGRLKDF ++P+++ YN LIQ FL+ADRLD+A L++REM A MDGFTL CFAY
Sbjct: 178 ALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAY 237
Query: 279 SLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVV 338
SLCK G+W+EAL L+E E FVPDTV YTK+ISGLCEASLFEEAMD LNRMRA SC+PNVV
Sbjct: 238 SLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 297
Query: 339 TFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKM 398
T+ LLCGCL K+QLGRCKRVL+MM+ EGCYPSP+IF+SL+HAYC SGD+SYAYKLL KM
Sbjct: 298 TYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 357
Query: 399 RKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCL 458
KCG PGYVVYNILIG ICG++D D+ +LAEKAY+EML AGVVLNKINVS+F +CL
Sbjct: 358 VKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCL 417
Query: 459 CGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDV 518
C AGKYEKA++VIREM+ +GFIPDTSTYSKV+ YLC+AS+ E AFLLF+EMKR GL+ DV
Sbjct: 418 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 477
Query: 519 YTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFET 578
YTYTI++D+FCKAGLIEQAR WF+EM + GC PNVVTYTALIHAYLKA+K S ANELFET
Sbjct: 478 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 537
Query: 579 MLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPN 638
MLS+GC+PNIVT++ALIDGHCKAG +E+AC+I+ RM G+ ++ DVD+YF+ D+N + PN
Sbjct: 538 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 597
Query: 639 VYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFS 698
V TYGAL+DG CK H+V EA LLDAMS+ GCEPN IVYDALIDG CKVGKLDEAQ V +
Sbjct: 598 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 657
Query: 699 KMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG 758
+M EHG +YTY SLIDR FK KR DLA KV+SKMLE+S APNVVIYTEMIDGL KVG
Sbjct: 658 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 717
Query: 759 KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYR 818
KT+EAYK+M MMEEKGC PNVVTYTAMIDGFG +GK++ CLELL +M SKG APN+VTYR
Sbjct: 718 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 777
Query: 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDS 878
VLI+HCC +G LD AHNLLEEMKQT+WPTH AGYRKVIEGF++EFI SLGL++E+G+ D+
Sbjct: 778 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDT 837
Query: 879 VPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKA 938
P + YR+LID+ IKA RLE+AL L EE+ +FS+ ++ LIESL LA K++ A
Sbjct: 838 APFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETA 897
Query: 939 FELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICH 982
F+L+ +M +K PE+ +F LIKGL R +K EAL L I H
Sbjct: 898 FQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISH 941
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 997 | ||||||
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.677 | 0.884 | 0.282 | 4.3e-70 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.752 | 0.861 | 0.245 | 2.1e-68 | |
| TAIR|locus:2827701 | 874 | AT2G17140 [Arabidopsis thalian | 0.633 | 0.723 | 0.275 | 1.6e-66 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.646 | 0.711 | 0.278 | 3e-65 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.758 | 0.679 | 0.264 | 3.1e-65 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.552 | 0.874 | 0.265 | 9.5e-65 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.550 | 0.728 | 0.289 | 1.6e-64 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.514 | 0.815 | 0.300 | 1.4e-62 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.530 | 0.839 | 0.302 | 8.5e-62 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.538 | 0.833 | 0.281 | 8.7e-61 |
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 200/708 (28%), Positives = 322/708 (45%)
Query: 143 KKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFL---RE-IGNEDKEV 198
K P ++ F +++G+ HT Y +++E + E+ L RE +GN E
Sbjct: 18 KDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLE- 76
Query: 199 LGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVY 258
G + + R G A+ R+ + +PT YNA++ V + + D A+ VY
Sbjct: 77 -GVYVGAM-KNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVY 134
Query: 259 REMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK---EEFVPDTVLYTKMISGLCEA 315
M D G + D ++ S CK R AL L+ + + V Y ++ G E
Sbjct: 135 MRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEE 194
Query: 316 SLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIF 375
+ E +L +M A + TF LL +K + C+++L +I G P+ +
Sbjct: 195 NFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTY 254
Query: 376 HSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKA 435
+ I C+ G+ A +++ + + G +P + YN LI G+C N F+ AE
Sbjct: 255 NLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSK------FQEAEVY 308
Query: 436 YAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCD 495
+M+N G+ + + + C G + A ++ + + GF+PD TY +I LC
Sbjct: 309 LGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCH 368
Query: 496 ASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVT 555
E +A LF E G+ P+V Y LI G+I +A +EM ++G P V T
Sbjct: 369 EGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT 428
Query: 556 YTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMK 615
+ L++ K S A+ L + M+SKG P+I TF LI G+ +E A
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL------- 481
Query: 616 GNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNI 675
EI DV +LDN +P+VYTY +L++GLCK K + + M GC PN
Sbjct: 482 ---EILDV-----MLDNGV-DPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLF 532
Query: 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKM 735
++ L++ C+ KLDEA + +M NP+ T+G+LID K+ LD A + KM
Sbjct: 533 TFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKM 592
Query: 736 LED-SYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK 794
E + + Y +I + A K+ M ++ P+ TY M+DGF K G
Sbjct: 593 EEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGN 652
Query: 795 VDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842
V+ + L +M G P+ T +IN C + EA ++ M Q
Sbjct: 653 VNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQ 700
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 196/799 (24%), Positives = 348/799 (43%)
Query: 92 FDAGRCS-NDAVMIANTLLTNNDGFGGNTQKFLRQFREKLSESXXXXXXXXIKKPELGVK 150
F+ R + ND I N L T +G + + L K +K ++
Sbjct: 29 FEGNRQTVND---ICNVLETGP--WGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIE 83
Query: 151 FFLWAGRQIGYSHTPPVYNALVEIM-ECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHK 209
+F W R+ H P YN+L+ +M C + D + +Q L E+ G +N I
Sbjct: 84 YFRWYERRTELPHCPESYNSLLLVMARCRNFDAL-DQILGEMSVAG---FGPSVNTCIEM 139
Query: 210 ---CCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGF 266
C + + + ++ F ++P + Y LI F + D ++++M + G+
Sbjct: 140 VLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGY 199
Query: 267 SMDGFTLGCFAYSLCKAGRWKEALELIEK---EEFVPDTVLYTKMISGLCEASLFEEAMD 323
K GR AL L+++ D VLY I + + A
Sbjct: 200 EPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWK 259
Query: 324 LLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYC 383
+ + A P+ VT+ ++ + +L + + P ++++I Y
Sbjct: 260 FFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYG 319
Query: 384 RSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGI--CGNEDLPASDVFELAEKAYAEMLN 441
+G + AY LL + R G P + YN ++ + G D A VFE +K +
Sbjct: 320 SAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVD-EALKVFEEMKK------D 372
Query: 442 AGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEK 501
A L+ N+ + LC AGK + A+ + M G P+ T + ++ LC + + ++
Sbjct: 373 AAPNLSTYNI--LIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDE 430
Query: 502 AFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIH 561
A +F+EM PD T+ LID K G ++ A +++M+ C N + YT+LI
Sbjct: 431 ACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIK 490
Query: 562 AYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEIS 621
+ + +++++ M+++ C P++ +D KAG+ E+ ++ +K +
Sbjct: 491 NFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVP 550
Query: 622 DV--------------------DIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDL 661
D ++++ + + C + Y +IDG CK KV +A+ L
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVL-DTRAYNIVIDGFCKCGKVNKAYQL 609
Query: 662 LDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK 721
L+ M G EP + Y ++IDG K+ +LDEA M+F + NV Y SLID K
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669
Query: 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVT 781
R+D A ++ ++++ PN+ + ++D L+K + EA M+E C PN VT
Sbjct: 670 VGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVT 729
Query: 782 YTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMK 841
Y +I+G KV K +K ++M +G P+ ++Y +I+ +G + EA L + K
Sbjct: 730 YGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFK 789
Query: 842 QTYWPTHVAGYRKVIEGFS 860
A Y +IEG S
Sbjct: 790 ANGGVPDSACYNAMIEGLS 808
|
|
| TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 1.6e-66, P = 1.6e-66
Identities = 182/661 (27%), Positives = 329/661 (49%)
Query: 232 KPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALE 291
KP+ +YN L++ ++ R++ +Y++M+ G + +T +LC + A E
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168
Query: 292 LIEK--EEFV-PDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCL 348
L ++ E+ P+ + ++ G C+A L ++ ++LLN M + +PN V + ++
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFC 228
Query: 349 RKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGF----Q 404
R+ + ++++ M EG P F+S I A C+ G A ++ S M + +
Sbjct: 229 REGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288
Query: 405 PGYVVYNILIGGICGNEDLP-ASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGK 463
P + YN+++ G C L A +FE + + ++ + L N+ ++Q L GK
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFE-SIRENDDLAS----LQSYNI--WLQGLVRHGK 341
Query: 464 YEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTI 523
+ +A V+++M KG P +Y+ ++ LC A + MKRNG+ PD TY
Sbjct: 342 FIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGC 401
Query: 524 LIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKG 583
L+ +C G ++ A++ EM++ C PN T L+H+ K + S+A EL M KG
Sbjct: 402 LLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKG 461
Query: 584 CIPNIVTFTALIDGHCKAGDIERACRIYARMK--GNAEISDV-DIYFRVLD-----NNCK 635
+ VT ++DG C +G++++A I M+ G+A + ++ + Y ++D NNC
Sbjct: 462 YGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCL 521
Query: 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQM 695
P++ TY L++GLCK + EA +L M +P+++ Y+ I FCK GK+ A
Sbjct: 522 -PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFR 580
Query: 696 VFSKMLEHGCNPNVYTYGSLIDRL-FKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754
V M + GC+ ++ TY SLI L K++ ++ ++ +M E +PN+ Y I L
Sbjct: 581 VLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIH-GLMDEMKEKGISPNICTYNTAIQYL 639
Query: 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNF 814
+ K E+A ++ M +K PNV ++ +I+ F KV D E+ S C
Sbjct: 640 CEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSI-CGQKE 698
Query: 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSR--EFIVSLGLVNE 872
Y ++ N A+G L +A LLE + + Y+ ++E + E V+ G++++
Sbjct: 699 GLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHK 758
Query: 873 M 873
M
Sbjct: 759 M 759
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 657 (236.3 bits), Expect = 3.0e-65, Sum P(2) = 3.0e-65
Identities = 191/687 (27%), Positives = 316/687 (45%)
Query: 201 KLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYRE 260
+ L+ L+H + + +A+E + G +P IY +I+ L A +
Sbjct: 193 RTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAH 252
Query: 261 MLDAGFSMDGFTLGCFAYSLCKAGRWKEALEL---IEKEEFVPDTVLYTKMISGLCEASL 317
M G ++ LCK + EA+ + + ++ PD V Y ++ GLC+
Sbjct: 253 MEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQE 312
Query: 318 FEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMM---ITEGCYPSPRI 374
FE +++++ M P+ L+ G LRKR G+ + L+++ + G P+ +
Sbjct: 313 FEIGLEMMDEMLCLRFSPSEAAVSSLVEG-LRKR--GKIEEALNLVKRVVDFGVSPNLFV 369
Query: 375 FHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEK 434
+++LI + C+ + A L +M K G +P V Y+ILI C L + F
Sbjct: 370 YNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSF----- 424
Query: 435 AYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLC 494
EM++ G+ L+ ++ + C G A + EM++K P TY+ ++G C
Sbjct: 425 -LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC 483
Query: 495 DASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVV 554
+ KA L+ EM G+ P +YT+T L+ +AGLI A F+EM + PN V
Sbjct: 484 SKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRV 543
Query: 555 TYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYAR- 613
TY +I Y + S+A E + M KG +P+ ++ LI G C G A +++
Sbjct: 544 TYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDG 602
Query: 614 -MKGNAEISDVDIYFRVLDNNCKEP-------------------NVYTYGALIDGLCKVH 653
KGN E++++ Y +L C+E ++ YG LIDG K H
Sbjct: 603 LHKGNCELNEI-CYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLK-H 660
Query: 654 KVREAH-DLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTY 712
K R+ LL M G +P++++Y ++ID K G EA ++ M+ GC PN TY
Sbjct: 661 KDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTY 720
Query: 713 GSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEE 772
++I+ L K ++ A + SKM S PN V Y +D L K G+ + V L
Sbjct: 721 TAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTK-GEVDMQKAVELHNAI 779
Query: 773 -KGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLD 831
KG N TY +I GF + G++++ EL+ +M G +P+ +TY +IN C +
Sbjct: 780 LKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVK 839
Query: 832 EAHNLLEEMKQTYWPTHVAGYRKVIEG 858
+A L M + Y +I G
Sbjct: 840 KAIELWNSMTEKGIRPDRVAYNTLIHG 866
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 3.1e-65, P = 3.1e-65
Identities = 211/799 (26%), Positives = 357/799 (44%)
Query: 194 EDKEVLGKLLNVLIHKCC-----RNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRA 248
++ E LG NV C R G N A E L R+ D G P Y LI A
Sbjct: 247 KEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTA 306
Query: 249 DRLDTAYLVYREMLDAGFSMDGFT----LGCFAYSLCKAGRWKEALELIEKEEFVPDTVL 304
+LD A V+ +M D T L F+ + K+ +EK+ VPD V
Sbjct: 307 RKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNR-DLDSVKQFWSEMEKDGHVPDVVT 365
Query: 305 YTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMI 364
+T ++ LC+A F EA D L+ MR + +PN+ T+ L+CG LR +L + M
Sbjct: 366 FTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNME 425
Query: 365 TEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGIC-GNEDL 423
+ G P+ + I Y +SGD A + KM+ G P V N + + D
Sbjct: 426 SLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDR 485
Query: 424 PASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDT 483
A +F Y + + G+V + + + ++C G+ ++A ++ EMM G PD
Sbjct: 486 EAKQIF------YG-LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538
Query: 484 STYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDE 543
+ +I L A ++A+ +F MK L P V TY L+ K G I++A F+
Sbjct: 539 IVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG 598
Query: 544 MVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGD 603
MV++GC PN +T+ L K + + A ++ M+ GC+P++ T+ +I G K G
Sbjct: 599 MVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQ 658
Query: 604 IERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLD 663
++ A + +MK D +L P V +LI+ K+ ++ D
Sbjct: 659 VKEAMCFFHQMK-KLVYPDFVTLCTLL------PGVVK-ASLIEDAYKII-TNFLYNCAD 709
Query: 664 AMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHG-CNPNVYTYGSLIDRLFKD 722
+P N+ ++ LI +D A +++ +G C +I K
Sbjct: 710 -------QPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKH 762
Query: 723 KRLDLALKVISKMLED-SYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVT 781
+ A + K +D P + Y +I GL++ E A V L ++ GC P+V T
Sbjct: 763 NNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVAT 822
Query: 782 YTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMK 841
Y ++D +GK GK+D+ EL ++MS+ C N +T+ ++I+ +G +D+A +L ++
Sbjct: 823 YNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLM 882
Query: 842 --QTYWPTHVAGYRKVIEGFSRE--FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGR 897
+ + PT Y +I+G S+ + L M P Y ILI+ + KAG
Sbjct: 883 SDRDFSPT-ACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941
Query: 898 LEVALELHEEMTXXXXXXXXXXXXTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTF 957
+ A L + M +L++ L + ++D+ + ++ +P++ +
Sbjct: 942 ADAACALFKRMVKEGVRPDLKTYS--VLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCY 999
Query: 958 VHLIKGLIRVNKWEEALQL 976
+I GL + ++ EEAL L
Sbjct: 1000 NLIINGLGKSHRLEEALVL 1018
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 9.5e-65, P = 9.5e-65
Identities = 156/588 (26%), Positives = 286/588 (48%)
Query: 209 KCCRNGFWNVALEELGRLKDFGY----KPTQAI--YNALIQVFLRADRLDTAYLVYREML 262
K RNG + L++ L FG +P +I ++ L+ + ++ D + +M
Sbjct: 51 KLSRNGLSELKLDDAVAL--FGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ 108
Query: 263 DAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEE---FVPDTVLYTKMISGLCEASLFE 319
+ G + +T C+ + AL ++ K + P+ V + +++G C +
Sbjct: 109 NLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRIS 168
Query: 320 EAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLI 379
EA+ L+++M PN VTF L+ G + ++ M+ +GC P + ++
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVV 228
Query: 380 HAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEM 439
+ C+ GD A+ LL+KM + +PG ++YN +I G+C + + D L + EM
Sbjct: 229 NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM--DDALNL----FKEM 282
Query: 440 LNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEA 499
G+ N + S+ + CLC G++ A ++ +M+ + PD T+S +I +
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342
Query: 500 EKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTAL 559
+A L+ EM + + P + TY+ LI+ FC +++A+ F+ MV + C P+VVTY L
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 560 IHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAE 619
I + K ++ + E+F M +G + N VT+ LI G +AGD + A I+ M +
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 620 ISDVDIYFRVLDNNCK-------------------EPNVYTYGALIDGLCKVHKVREAHD 660
++ Y +LD CK EP +YTY +I+G+CK KV + D
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522
Query: 661 LLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLF 720
L +S+ G +P+ + Y+ +I GFC+ G +EA +F +M E G PN Y +LI
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582
Query: 721 KDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVML 768
+D + + ++I +M +A + ++ ++ G+ ++++ ML
Sbjct: 583 RDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKSFLDML 629
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 1.6e-64, P = 1.6e-64
Identities = 173/597 (28%), Positives = 272/597 (45%)
Query: 294 EKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQL 353
+K F P+ LY +++ L + F++ +L M++ C TF IL+ +
Sbjct: 75 KKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQ 134
Query: 354 GRCKRVLSMMITE-GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNI 412
V+ MI E G P ++ +++ +KM G +P +N+
Sbjct: 135 DEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNV 194
Query: 413 LIGGICGN----------EDLPA------SDVFELAEKAYAE-------------MLNAG 443
LI +C ED+P+ F + Y E M+ G
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254
Query: 444 VVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSK-GFIPDTSTYSKVIGYLCDASEAEKA 502
+ ++V+ V C G+ E A N I+EM ++ GF PD T++ ++ LC A + A
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHA 314
Query: 503 FLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHA 562
+ M + G PDVYTY +I CK G +++A D+M+ C PN VTY LI
Sbjct: 315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIST 374
Query: 563 YLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISD 622
K + +A EL + SKG +P++ TF +LI G C + A ++ M+
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG---- 430
Query: 623 VDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALID 682
C EP+ +TY LID LC K+ EA ++L M + GC + I Y+ LID
Sbjct: 431 -----------C-EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 683 GFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAP 742
GFCK K EA+ +F +M HG + N TY +LID L K +R++ A +++ +M+ + P
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538
Query: 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELL 802
+ Y ++ + G ++A ++ M GC P++VTY +I G K G+V+ +LL
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598
Query: 803 RQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEM-KQTYWPTHVAGYRKVIEG 858
R + KG Y +I EA NL EM +Q P YR V G
Sbjct: 599 RSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRG 655
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 164/546 (30%), Positives = 259/546 (47%)
Query: 319 EEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQ----LGRCKRVLSMMITEGCYPSPRI 374
++A+DL M +P++V F LL + + + +R+ ++ I+ Y
Sbjct: 62 DDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS---- 117
Query: 375 FHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEK 434
++ LI+ +CR A +L KM K G++P V + L+ G C + + S+ L ++
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRI--SEAVALVDQ 175
Query: 435 AYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLC 494
+ N + + + L K +A +I M+++G PD TY V+ LC
Sbjct: 176 MFVMEYQP----NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLC 231
Query: 495 DASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVV 554
+ + A L ++M++ + DV YT +ID C + A N F EM +G PNVV
Sbjct: 232 KRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 291
Query: 555 TYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARM 614
TY +LI + S A+ L M+ + PN+VTF+ALID K G + A ++Y M
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 351
Query: 615 KGNAEISDVDIYFRVLDNNC-----------------KE--PNVYTYGALIDGLCKVHKV 655
+ D+ Y +++ C K+ PNV TY LI G CK +V
Sbjct: 352 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 411
Query: 656 REAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715
E +L MS G N + Y+ LI G + G D AQ +F KM+ G P++ TY L
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471
Query: 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC 775
+D L K +L+ AL V + + P++ Y MI+G+ K GK E+ + + + KG
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531
Query: 776 YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHN 835
PNV+ YT MI GF + G ++ L R+M G PN TY LI G +
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAE 591
Query: 836 LLEEMK 841
L++EM+
Sbjct: 592 LIKEMR 597
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 8.5e-62, P = 8.5e-62
Identities = 169/558 (30%), Positives = 261/558 (46%)
Query: 305 YTKM-ISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMM 363
Y K+ I+ L + L ++A++L M P++V F LL + + + M
Sbjct: 49 YRKISINRLNDLKL-DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQM 107
Query: 364 ITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGIC-GNED 422
G + + LI+ +CR S A +L+KM K G++P V N L+ G C GN
Sbjct: 108 QNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNR- 166
Query: 423 LPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPD 482
SD L +M+ G + + + L + +A ++ M+ KG PD
Sbjct: 167 --ISDAVSLV----GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPD 220
Query: 483 TSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFD 542
TY V+ LC + + A L ++M++ + P V Y +ID C + A N F
Sbjct: 221 LVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFT 280
Query: 543 EMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAG 602
EM +G PNVVTY +LI + S A+ L M+ + PN+VTF+ALID K G
Sbjct: 281 EMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG 340
Query: 603 DIERACRIYARMKGNAEISDVDIYFRVLDNNC-----------------KE--PNVYTYG 643
+ A ++Y M + D+ Y +++ C K+ PNV TY
Sbjct: 341 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN 400
Query: 644 ALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEH 703
LI G CK +V E +L MS G N + Y LI GF + + D AQ+VF +M+
Sbjct: 401 TLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSD 460
Query: 704 GCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEA 763
G P++ TY L+D L + +++ AL V + P++ Y MI+G+ K GK E+
Sbjct: 461 GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDG 520
Query: 764 YKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH 823
+ + + KG PNVVTYT M+ GF + G ++ L R+M +G P+ TY LI
Sbjct: 521 WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580
Query: 824 CCASGLLDEAHNLLEEMK 841
G + L+ EM+
Sbjct: 581 HLRDGDKAASAELIREMR 598
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 8.7e-61, P = 8.7e-61
Identities = 164/583 (28%), Positives = 282/583 (48%)
Query: 307 KMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITE 366
K+ SGL ++A+DL M +P V+ F L + +Q + M ++
Sbjct: 59 KLSSGLVGIKA-DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESK 117
Query: 367 GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGIC----GNED 422
G S +I+ +CR SYA+ + K+ K G++P V++N L+ G+C +E
Sbjct: 118 GIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEA 177
Query: 423 LPASD-VFELAEKAYAEMLNA---GVVLN-KIN-----VSNFVQC--------------- 457
L D + E+ K LN G+ LN K++ + V+
Sbjct: 178 LELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNV 237
Query: 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPD 517
+C +G+ A ++R+M + D YS +I LC + AF LF EM+ G D
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297
Query: 518 VYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFE 577
+ TY LI FC AG + +M+K PNVVT++ LI +++K K +A++L +
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357
Query: 578 TMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEP 637
M+ +G PN +T+ +LIDG CK +E A ++ VD+ ++ C +P
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM------------VDL---MISKGC-DP 401
Query: 638 NVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVF 697
++ T+ LI+G CK +++ + +L MS+ G N + Y+ L+ GFC+ GKL+ A+ +F
Sbjct: 402 DIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLF 461
Query: 698 SKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV 757
+M+ P++ +Y L+D L + L+ AL++ K+ + ++ IY +I G+
Sbjct: 462 QEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNA 521
Query: 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTY 817
K ++A+ + + KG + Y MI + + K L R+M+ +G AP+ +TY
Sbjct: 522 SKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTY 581
Query: 818 RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFS 860
+LI A L+EEMK + +P V+ + VI S
Sbjct: 582 NILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLS 624
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M9X9 | PPR18_ARATH | No assigned EC number | 0.6527 | 0.9518 | 0.9614 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00005691001 | SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (952 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 997 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-28 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-32
Identities = 97/411 (23%), Positives = 175/411 (42%), Gaps = 50/411 (12%)
Query: 204 NVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLD 263
N+L+ C + + AL L +++ G K +Y LI ++ ++D + V+ EM++
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500
Query: 264 AGFSMDGFTLGCFAYSLCKAGRWKEALE----LIEKEEFVPDTVLYTKMISGLCEASLFE 319
AG + T G +AG+ +A + K PD V++ +IS ++ +
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVD 559
Query: 320 EAMDLLNRMRARS--CIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHS 377
A D+L M+A + P+ +T L+ C Q+ R K V M+ +P ++
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 378 LIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYA 437
+++ + GD+ +A + M+K G +P V ++ L+ DV
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV------------DV--------- 658
Query: 438 EMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDAS 497
AG AG +KA+ ++++ +G T +YS ++G +A
Sbjct: 659 ----AG----------------HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 498 EAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYT 557
+KA L++++K L P V T LI C+ + +A EM + G PN +TY+
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758
Query: 558 ALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERAC 608
L+ A + +L G PN+V + G C E+AC
Sbjct: 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLR-RFEKAC 807
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 2e-32
Identities = 92/399 (23%), Positives = 173/399 (43%), Gaps = 24/399 (6%)
Query: 446 LNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLL 505
++KI + F + ++A+ + + + P ST++ ++ + + + A +
Sbjct: 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRV 459
Query: 506 FQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLK 565
+ ++ GL D YT LI K+G ++ F EMV G + NV T+ ALI +
Sbjct: 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519
Query: 566 ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDI 625
A + ++A + M SK P+ V F ALI ++G ++RA + A MK AE +D
Sbjct: 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK--AETHPID- 576
Query: 626 YFRVLDNNCKEPNVYTYGALIDGLCK---VHKVREAHDLLDAMSVVGCEPNNIVYDALID 682
P+ T GAL+ V + +E + ++ ++ G VY ++
Sbjct: 577 -----------PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE---VYTIAVN 622
Query: 683 GFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAP 742
+ G D A ++ M + G P+ + +L+D LD A +++ +
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELL 802
V Y+ ++ ++A ++ ++ P V T A+I + ++ K LE+L
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742
Query: 803 RQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMK 841
+M G PN +TY +L+ D +LL + K
Sbjct: 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-28
Identities = 110/468 (23%), Positives = 203/468 (43%), Gaps = 44/468 (9%)
Query: 279 SLCKAGRWKEALELIEKEE----FVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCI 334
L + GR K+ ++L+E E D + + K + +EA +R
Sbjct: 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----N 434
Query: 335 PNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKL 394
P + TF +L+ C + + RVL ++ G +++ +LI +SG +++
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 395 LSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNF 454
+M G + + LI G C A V + A AY M + V +++ V N
Sbjct: 495 FHEMVNAGVEANVHTFGALIDG-CAR----AGQVAK-AFGAYGIMRSKNVKPDRV-VFNA 547
Query: 455 VQCLCG-AGKYEKAYNVIREMM--SKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKR 511
+ CG +G ++A++V+ EM + PD T ++ +A + ++A ++Q +
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
Query: 512 NGL--IPDVYTYTILIDNFC-KAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARK 568
+ P+VYT + N C + G + A + +D+M K+G P+ V ++AL+ A
Sbjct: 608 YNIKGTPEVYTIAV---NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 569 PSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFR 628
+A E+ + +G V++++L+ A + ++A +Y +K I R
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS--------IKLR 716
Query: 629 VLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVG 688
P V T ALI LC+ +++ +A ++L M +G PN I Y L+ +
Sbjct: 717 --------PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 689 KLDEAQMVFSKMLEHGCNPNVYTYGSLID---RLFKDKRLDLALKVIS 733
D + S+ E G PN+ + R F +K L V+S
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF-EKACALGEPVVS 815
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-26
Identities = 109/501 (21%), Positives = 192/501 (38%), Gaps = 53/501 (10%)
Query: 459 CGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDV 518
+ + A V+R + G D Y+ +I + + + F +F EM G+ +V
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507
Query: 519 YTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFET 578
+T+ LID +AG + +A + M + P+ V + ALI A ++ +A ++
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567
Query: 579 ML--SKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCK- 635
M + P+ +T AL+ AG ++RA +Y + + N K
Sbjct: 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH---------------EYNIKG 612
Query: 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQM 695
P VYT ++ + A + D M G +P+ + + AL+D G LD+A
Sbjct: 613 TPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 696 VFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLI 755
+ + G +Y SL+ K AL++ + P V +I L
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 756 KVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFV 815
+ + +A +V+ M+ G PN +TY+ ++ + D L+LL Q G PN V
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790
Query: 816 TYRVLINHC-------CASGLLD---EAHNLLEEMKQTYWPTHVAGYRKVIEG------- 858
R + C CA G ++ E K T W V YR+ I
Sbjct: 791 MCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV--YRETISAGTLPTME 848
Query: 859 ----------FSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEV-ALELHEE 907
+ + L+ +G + L+D + G + A L EE
Sbjct: 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEE 905
Query: 908 MTSFSSNSAASRNSTLLLIES 928
S + S + ++I++
Sbjct: 906 AASLGVVPSVSFKKSPIVIDA 926
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-25
Identities = 116/542 (21%), Positives = 222/542 (40%), Gaps = 57/542 (10%)
Query: 308 MISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEG 367
++ G +A F+EA+ L +RM P+V TF +L C L R + V + ++ G
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217
Query: 368 CYPSPRIFHSLIHAYCRSGDYSYAYKLLSKM--RKCGFQPGYVVYNILIGGICGNEDLPA 425
+ ++LI Y + GD A + +M R C + +N +I G N
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC------ISWNAMISGYFEN----- 266
Query: 426 SDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGA------GKYEKAYNVIREMMSKGF 479
+ + M V + + +++ V C G+ Y V GF
Sbjct: 267 -GECLEGLELFFTMRELSVDPDLMTITS-VISACELLGDERLGREMHGYVVKT-----GF 319
Query: 480 IPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARN 539
D S + +I +A +F M+ D ++T +I + K GL ++A
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALE 375
Query: 540 WFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHC 599
+ M ++ P+ +T +++ A +L E KG I +V ALI+ +
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435
Query: 600 KAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAH 659
K I++A ++ + E +V ++ ++I GL ++ EA
Sbjct: 436 KCKCIDKALEVFHNI--------------------PEKDVISWTSIIAGLRLNNRCFEAL 475
Query: 660 DLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRL 719
M ++ +PN++ A + ++G L + + + +L G + + +L+D
Sbjct: 476 IFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534
Query: 720 FKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV 779
+ R++ A + S+ +VV + ++ G + GK A ++ M E G P+
Sbjct: 535 VRCGRMNYAWNQFN-----SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAPNFVTYRVLINHCCASGLLDEAHNLLE 838
VT+ +++ + G V + LE M K PN Y +++ +G L EA+N +
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
Query: 839 EM 840
+M
Sbjct: 650 KM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 9e-25
Identities = 92/425 (21%), Positives = 183/425 (43%), Gaps = 45/425 (10%)
Query: 455 VQCLCGAGKYEKAYNVIREMMSKG-FIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNG 513
++ L G++ +A + + + F STY ++ ++ ++ +G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 514 LIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQAN 573
PD Y ++ K G++ AR FDEM + N+ ++ +I + A +A
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAF 209
Query: 574 ELFETMLSKGCIPNIVTFTALID-----GHCKAGDIERACRIYARMKGNAEISDVDIYFR 628
LF M G TF ++ G +AG C + + G+
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD----------- 258
Query: 629 VLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVG 688
+ ALID K + +A + D M E + +++++ G+ G
Sbjct: 259 ----------TFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHG 304
Query: 689 KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYT 748
+EA ++ +M + G + + +T+ +I + L+ A + + ++ + ++V T
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 749 EMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK 808
++D K G+ E+A V M K N++++ A+I G+G G+ K +E+ +M ++
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 809 GCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVA-GYRKVIEGFSREFIVSL 867
G APN VT+ +++ C SGL ++ + + M + + A Y +IE RE
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE----- 475
Query: 868 GLVNE 872
GL++E
Sbjct: 476 GLLDE 480
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 2e-20
Identities = 90/348 (25%), Positives = 152/348 (43%), Gaps = 38/348 (10%)
Query: 645 LIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHG 704
L DG ++++ DLL+ M G + +Y A CK + + F+K++
Sbjct: 381 LRDG-----RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-- 433
Query: 705 CNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAY 764
NP + T+ L+ + +D AL+V+ + E + +YT +I K GK + +
Sbjct: 434 -NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 765 KVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHC 824
+V M G NV T+ A+IDG + G+V K M SK P+ V + LI+ C
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 825 CASGLLDEAHNLLEEMK---QTYWPTHVAGYRKVIEGFSREFIVSLGL-VNEMGKTDSVP 880
SG +D A ++L EMK P H+ +++ + V V +M ++
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHIT-VGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 881 IVPA-YRILIDHYIKAGRLEVALELHEEMTS---------FSSNSAASRNSTLLLIESLS 930
P Y I ++ + G + AL ++++M FS+ L++
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA-----------LVDVAG 660
Query: 931 LARKIDKAFELYVDMIRKDGSPELSTFVH--LIKGLIRVNKWEEALQL 976
A +DKAFE+ D RK G L T + L+ W++AL+L
Sbjct: 661 HAGDLDKAFEILQDA-RKQGIK-LGTVSYSSLMGACSNAKNWKKALEL 706
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 3e-20
Identities = 129/619 (20%), Positives = 244/619 (39%), Gaps = 70/619 (11%)
Query: 377 SLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAY 436
S + A C G A KLL M++ Y L +C + E +
Sbjct: 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF-RLCEWK-----RAVEEGSRVC 109
Query: 437 A----EMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGY 492
+ + GV L +S FV+ G+ A+ V +M + D +++ ++G
Sbjct: 110 SRALSSHPSLGVRLGNAMLSMFVR----FGELVHAWYVFGKMPER----DLFSWNVLVGG 161
Query: 493 LCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPN 552
A ++A L+ M G+ PDVYT+ ++ + + R +V+ G + +
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221
Query: 553 VVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYA 612
V ALI Y+K A +F+ M + CI ++ A+I G+ + G+ ++
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFF 277
Query: 613 RMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEP 672
M+ VD P++ T ++I + R ++ + G
Sbjct: 278 TMREL----SVD------------PDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVI 732
+ V ++LI + +G EA+ VFS+M + ++ ++I K+ D AL+
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETY 377
Query: 733 SKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV 792
+ M +D+ +P+ + ++ +G + K+ + E KG VV A+I+ + K
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 793 GKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGY 852
+DK LE+ + K + +++ +I + EA +M T P V
Sbjct: 438 KCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVT-L 492
Query: 853 RKVIEGFSREFIVSLG-------LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELH 905
+ +R + G L +G +P L+D Y++ GR+ A
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP-----NALLDLYVRCGRMNYAW--- 544
Query: 906 EEMTSFSSNS--AASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963
F+S+ S N +L+ K A EL+ M+ +P+ TF+ L+
Sbjct: 545 ---NQFNSHEKDVVSWN---ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598
Query: 964 LIRVNKWEEALQLSYSICH 982
R + L+ +S+
Sbjct: 599 CSRSGMVTQGLEYFHSMEE 617
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 6e-19
Identities = 126/619 (20%), Positives = 236/619 (38%), Gaps = 66/619 (10%)
Query: 204 NVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLD 263
NVL+ + G+++ AL R+ G +P + +++ L V+ ++
Sbjct: 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215
Query: 264 AGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMD 323
GF +D + K G A + ++ D + + MISG E E ++
Sbjct: 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLE 274
Query: 324 LLNRMRARSCIPNVVTFR--ILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHA 381
L MR S P+++T I C L +LGR + ++ G + +SLI
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGR--EMHGYVVKTGFAVDVSVCNSLIQM 332
Query: 382 YCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLN 441
Y G + A K+ S+M V + +I G LP + A + YA M
Sbjct: 333 YLSLGSWGEAEKVFSRMET----KDAVSWTAMISG-YEKNGLP-----DKALETYALMEQ 382
Query: 442 AGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEK 501
V ++I +++ + G + + KG I + +I +K
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 502 AFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIH 561
A +F + DV ++T +I +A +F +M+ PN VT A +
Sbjct: 443 ALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALS 497
Query: 562 A-----YLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616
A L K A+ L + G +PN AL+D + + G + A +
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYAWNQF----- 547
Query: 617 NAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIV 676
N E +V ++ L+ G K A +L + M G P+ +
Sbjct: 548 ----------------NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 677 YDALIDGFCKVGKLDEAQMVFSKM-LEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKM 735
+ +L+ + G + + F M ++ PN+ Y ++D L + +L A I+KM
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
Query: 736 LEDSYAPNVVIYTEMIDGL-----IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790
P+ ++ +++ +++G E A + + ++ +V Y + + +
Sbjct: 652 ---PITPDPAVWGALLNACRIHRHVELG--ELAAQHIFELDPN----SVGYYILLCNLYA 702
Query: 791 KVGKVDKCLELLRQMSSKG 809
GK D+ + + M G
Sbjct: 703 DAGKWDEVARVRKTMRENG 721
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 1e-17
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 551 PNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCK 600
P+VVTY LI Y K K +A +LF M +G PN+ T++ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 2e-17
Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 50/360 (13%)
Query: 474 MMSKGFIPDTSTYSKVI------GYLCDASEAEKAFLLFQEM-KRNGLIPDVYTYTILID 526
+ S GF PD ++V+ G L DA LF EM +RN ++ +I
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARR------LFDEMPERNL-----ASWGTIIG 197
Query: 527 NFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIP 586
AG +A F EM ++G D T+ ++ A +L +L G +
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 587 NIVTFTALIDGHCKAGDIERACRIYARM-----------------KGNAEISDVDIYFRV 629
+ ALID + K GDIE A ++ M G +E + +Y+ +
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE-EALCLYYEM 316
Query: 630 LDNNCKEPNVYTYGALI---DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYD-ALIDGFC 685
D+ +T+ +I L + ++AH A + P +IV + AL+D +
Sbjct: 317 RDSGVSIDQ-FTFSIMIRIFSRLALLEHAKQAH----AGLIRTGFPLDIVANTALVDLYS 371
Query: 686 KVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV 745
K G++++A+ VF +M N+ ++ +LI R A+++ +M+ + APN V
Sbjct: 372 KWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427
Query: 746 IYTEMIDGLIKVGKTEEAYKVMLMM-EEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQ 804
+ ++ G +E+ +++ M E P + Y MI+ G+ G +D+ ++R+
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 2e-17
Identities = 26/50 (52%), Positives = 31/50 (62%)
Query: 516 PDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLK 565
PDV TY LID +CK G +E+A F+EM K G PNV TY+ LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 1e-16
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC 825
P+VVTY +IDG+ K GKV++ L+L +M +G PN TY +LI+ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 2e-16
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK 791
P+VV Y +IDG K GK EEA K+ M+++G PNV TY+ +IDG K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 8e-16
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 481 PDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCK 530
PD TY+ +I C + E+A LF EMK+ G+ P+VYTY+ILID CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 6e-15
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 16/66 (24%)
Query: 586 PNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGAL 645
P++VT+ LIDG+CK G +E A +++ MK K PNVYTY L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK---------------KRGIK-PNVYTYSIL 44
Query: 646 IDGLCK 651
IDGLCK
Sbjct: 45 IDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 1e-14
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 672 PNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK 721
P+ + Y+ LIDG+CK GK++EA +F++M + G PNVYTY LID L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 4e-14
Identities = 26/50 (52%), Positives = 29/50 (58%)
Query: 637 PNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK 686
P+V TY LIDG CK KV EA L + M G +PN Y LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 2e-12
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 300 PDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGC 347
PD V Y +I G C+ EEA+ L N M+ R PNV T+ IL+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 2e-09
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 773 KGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806
KG P+VVTY +IDG + G+VD+ +ELL +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 512 NGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMV 545
GL PDV TY LID C+AG +++A DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 7e-09
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 582 KGCIPNIVTFTALIDGHCKAGDIERACRIYARMK 615
KG P++VT+ LIDG C+AG ++ A + M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 2e-08
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 669 GCEPNNIVYDALIDGFCKVGKLDEAQMVFSKM 700
G +P+ + Y+ LIDG C+ G++DEA + +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 3e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 377 SLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGIC 418
+LI YC+ G A KL ++M+K G +P Y+ILI G+C
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 519 YTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNV 553
TY LID CKAG +E+A F EM + G +P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 77/368 (20%), Positives = 134/368 (36%), Gaps = 83/368 (22%)
Query: 627 FRVLDNNCK-EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFC 685
F +L+ C TY AL++ + +R + + G EP+ + + ++
Sbjct: 110 FEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169
Query: 686 KVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAP--- 742
K G L +A+ +F +M E N+ ++G++I L A + +M ED
Sbjct: 170 KCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225
Query: 743 --------------------------------NVVIYTEMIDGLIKVGKTEEAYKVMLMM 770
+ + +ID K G E+A V M
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285
Query: 771 EEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLL 830
EK V + +M+ G+ G ++ L L +M G + + T+ ++I LL
Sbjct: 286 PEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341
Query: 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILID 890
+ A KQ + AG + GF + + + LV D
Sbjct: 342 EHA-------KQAH-----AGL--IRTGFPLDIVANTALV-------------------D 368
Query: 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDG 950
Y K GR+E A + + M + S N+ LI + KA E++ MI +
Sbjct: 369 LYSKWGRMEDARNVFDRM---PRKNLISWNA---LIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 951 SPELSTFV 958
+P TF+
Sbjct: 423 APNHVTFL 430
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN 813
VTY +IDG K G+V++ LEL ++M +G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 7e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 808 KGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMK 841
KG P+ VTY LI+ C +G +DEA LL+EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 7e-07
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGC 810
VTY ++I G+ K GK+++ LEL ++M KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 1e-06
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMS 666
+P+V TY LIDGLC+ +V EA +LLD M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 5e-06
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 335 PNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCR 384
P+VVT+ L+ G +K ++ ++ + M G P+ + LI C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 519 YTYTILIDNFCKAGLIEQARNWFDEMVKEGC 549
TY LI +CKAG +E+A F EM ++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-06
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 303 VLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNV 337
V Y +I GLC+A EEA++L M+ R P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 25/233 (10%)
Query: 257 VYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEAS 316
++ +L G DGF + GR A E D V + +++G
Sbjct: 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE--KDVVSWNILLTGYVAHG 568
Query: 317 LFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITE-GCYPSPRIF 375
A++L NRM P+ VTF LLC C R + + M + P+ + +
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
Query: 376 HSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGG--ICGNEDLPASDVFELAE 433
++ R+G + AY ++KM P V+ L+ I + +L ELA
Sbjct: 629 ACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELG-----ELAA 680
Query: 434 KAYAEMLNAGVVLNKINVSNFVQCLCG----AGKYEKAYNVIREMMSKGFIPD 482
+ E L+ +V ++ LC AGK+++ V + M G D
Sbjct: 681 QHIFE-------LDPNSVGYYI-LLCNLYADAGKWDEVARVRKTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 1e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 548 GCDPNVVTYTALIHAYLKARKPSQANELFETM 579
G P+VVTY LI +A + +A EL + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 554 VTYTALIHAYLKARKPSQANELFETMLSKGCIPNI 588
VTY LI KA + +A ELF+ M +G P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 456 QCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCD 495
C GK E+A + EM +G P+ TYS +I LC
Sbjct: 11 DGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNV 709
+ Y+ LIDG CK G+++EA +F +M E G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGC 705
+ Y++LI G+CK GKL+EA +F +M E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 74/343 (21%), Positives = 127/343 (37%), Gaps = 78/343 (22%)
Query: 238 YNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFT----LGCFAY------------SL- 280
+N+++ + + A +Y EM D+G S+D FT + F+ L
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 281 ------------------CKAGRWKEALELIEKEEFVP--DTVLYTKMISGLCEASLFEE 320
K GR ++A + ++ +P + + + +I+G +
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDR---MPRKNLISWNALIAGYGNHGRGTK 409
Query: 321 AMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFH--SL 378
A+++ RM A PN VTF +L C + + M +E PR H +
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM-SENHRIKPRAMHYACM 468
Query: 379 IHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYA- 437
I R G AY ++ R+ F+P ++ L+ +++L + AEK Y
Sbjct: 469 IELLGREGLLDEAYAMI---RRAPFKPTVNMWAALLTACRIHKNLELGRL--AAEKLYGM 523
Query: 438 --EMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGF--IPDTS-------TY 486
E LN VVL + S +G+ +A V+ + KG P + +
Sbjct: 524 GPEKLNNYVVLLNLYNS--------SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575
Query: 487 SKVIGYLCDASEAE---KAFLLFQEMKRNG-------LIPDVY 519
S G E K L +E+ G L+PDV
Sbjct: 576 SFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 704 GCNPNVYTYGSLIDRLFKDKRLDLALKVISKM 735
G P+V TY +LID L + R+D A++++ +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV 779
V Y +IDGL K G+ EEA ++ M+E+G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 640 YTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN 673
TY LIDGLCK +V EA +L M G EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 7e-05
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 812 PNFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842
P+ VTY LI+ C G ++EA L EMK+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK 31
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 554 VTYTALIHAYLKARKPSQANELFETMLSKGC 584
VTY +LI Y KA K +A ELF+ M KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 1e-04
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 233 PTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCK 282
P YN LI + + +++ A ++ EM G + +T LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 279 SLCKAGRWKEALELIE---KEEFVPDTVLYTKMISGLC 313
CK G+ +EAL+L K P+ Y+ +I GLC
Sbjct: 12 GYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 1e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 298 FVPDTVLYTKMISGLCEASLFEEAMDLLNRMR 329
PD V Y +I GLC A +EA++LL+ M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 518 VYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDP 551
+ TY L+ KAG + A +EM G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 367 GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMR 399
G P +++LI CR+G A +LL +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 373 RIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQP 405
+++LI C++G A +L +M++ G +P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 589 VTFTALIDGHCKAGDIERACRIYARMK 615
VT+ LIDG CKAG +E A ++ MK
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK 27
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 589 VTFTALIDGHCKAGDIERACRIYARMKGN 617
VT+ +LI G+CKAG +E A ++ MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 815 VTYRVLINHCCASGLLDEAHNLLEEMKQ 842
VTY LI+ C +G L+EA L +EMK+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 374 IFHSLIHAYCRSGDYSYAYKLLSKMRKCGF 403
++SLI YC++G A +L +M++ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 485 TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDV 518
TY+ +I LC A E+A LF+EMK G+ PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC 775
V Y +I G K GK EEA ++ M+EKG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 237 IYNALIQVFLRADRLDTAYLVYREMLDAGFSMD 269
YN LI +A R++ A +++EM + G D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 303 VLYTKMISGLCEASLFEEAMDLLNRMRARSC 333
V Y +ISG C+A EEA++L M+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 588 IVTFTALIDGHCKAGDIERACRIYARMK 615
+ T+ AL+ KAGD + A + MK
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMK 28
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 815 VTYRVLINHCCASGLLDEAHNLLEEMKQT 843
TY L+ +G D A +LEEMK +
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKAS 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 553 VVTYTALIHAYLKARKPSQANELFETMLSKGCIP 586
+ TY AL+ A KA P A + E M + G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 779 VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP 812
+ TY A++ K G D L +L +M + G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 59/290 (20%), Positives = 104/290 (35%), Gaps = 46/290 (15%)
Query: 688 GKLDEAQMVFSKMLEHGC--NPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV 745
G+ EA +F ++LE GC TY +L++ K + V + + P+
Sbjct: 101 GRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQM 805
+ ++ +K G +A ++ M E+ N+ ++ +I G G + L R+M
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 806 SSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIV 865
G T+ V++ G L H
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQL-----------HCC--------------- 249
Query: 866 SLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLL 925
V + G + A LID Y K G +E A + + M + + NS +
Sbjct: 250 ----VLKTGVVGDTFVSCA---LIDMYSKCGDIEDARCVFDGM---PEKTTVAWNS---M 296
Query: 926 IESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQ 975
+ +L ++A LY +M S + TF +I+ R+ E A Q
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNP 707
Y+AL+ K G D A V +M G P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 454 FVQCLCGAGKYEKAYNVIREMMSKGFIPDT 483
+ LC AG+ E+A + +EM +G PD
Sbjct: 6 LIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNV 744
TY +LID L K R++ AL++ +M E P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (92), Expect = 0.003
Identities = 48/275 (17%), Positives = 93/275 (33%), Gaps = 19/275 (6%)
Query: 533 LIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSK-GCIPNIVTF 591
+ A E + + + A + + ++A EL E L
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 592 TALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCK 651
L K G +E A +++ + L+ L L
Sbjct: 63 LLLALALLKLGRLEEA---------------LELLEKALELELLPNLAEALLNLGLLLEA 107
Query: 652 VHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLE--HGCNPNV 709
+ K EA +LL+ + +P+ + ++G +EA ++ K LE N
Sbjct: 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELA 167
Query: 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLM 769
+L L R + AL+++ K L+ + + + +K+GK EEA +
Sbjct: 168 EALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227
Query: 770 MEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQ 804
E N + ++G+ ++ LE L +
Sbjct: 228 ALEL-DPDNAEALYNLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.004
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 925 LIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL 964
LI+ K+++A +L+ +M ++ P + T+ LI GL
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.004
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMME 771
P+VV Y +IDGL + G+ +EA +++ ME
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 997 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG2804 | 348 | consensus Phosphorylcholine transferase/cholinepho | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.56 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.48 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.42 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.34 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.32 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.27 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.1 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.07 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.07 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.96 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.81 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.71 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.61 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.61 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.52 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.5 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.44 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.42 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.36 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.27 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.2 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.15 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.11 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.08 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.07 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.0 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.97 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.87 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.86 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.85 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.84 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.8 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.79 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.71 | |
| PLN02413 | 294 | choline-phosphate cytidylyltransferase | 97.71 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.68 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.67 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.66 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.64 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.64 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.62 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.61 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.6 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.6 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.58 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.57 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.56 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.55 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.48 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.47 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.37 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.33 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.33 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.28 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.28 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.28 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.25 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.24 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.23 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.2 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.19 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.19 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.18 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.17 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.14 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.12 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.08 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.9 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.88 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.82 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.81 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.75 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.73 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.66 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.58 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.57 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.5 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.47 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.45 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.41 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.33 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.32 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.24 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.21 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.21 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.15 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.94 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.91 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.76 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.75 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.73 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.65 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.64 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.63 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.58 | |
| COG0615 | 140 | TagD Cytidylyltransferase [Cell envelope biogenesi | 95.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.4 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.33 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.97 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.96 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.93 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.85 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.84 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.76 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.62 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.58 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.48 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.42 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.29 | |
| KOG2803 | 358 | consensus Choline phosphate cytidylyltransferase/P | 94.17 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.03 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.92 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.86 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.62 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.57 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.42 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.35 | |
| cd02174 | 150 | CCT CTP:phosphocholine cytidylyltransferase. CTP:p | 93.31 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.31 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.28 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.18 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.16 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.96 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.96 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.91 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.89 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.86 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.85 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.63 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.61 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.58 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.08 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.05 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.01 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.44 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.35 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.27 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.26 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.22 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.17 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 90.77 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.26 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.21 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.1 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.02 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 90.0 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.98 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.77 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.64 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 89.52 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.2 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.66 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.6 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.42 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 88.32 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.17 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.98 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.86 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.82 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.39 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.35 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.06 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.6 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.53 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.41 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.39 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 86.1 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.99 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.59 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.54 | |
| PLN02406 | 418 | ethanolamine-phosphate cytidylyltransferase | 85.46 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.33 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.28 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.14 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 84.94 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.88 | |
| PLN02406 | 418 | ethanolamine-phosphate cytidylyltransferase | 84.59 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.4 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.7 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.2 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.04 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 81.75 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.26 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.13 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.99 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 80.37 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.03 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-84 Score=787.26 Aligned_cols=674 Identities=20% Similarity=0.275 Sum_probs=648.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHH
Q 001911 201 KLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSL 280 (997)
Q Consensus 201 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 280 (997)
..++.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.++.|..++..+.+.|..++..+++.++.+|
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHH
Q 001911 281 CKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVL 360 (997)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (997)
++.|+++.|.++|+++. .||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.++.+|+..+++..+.+++
T Consensus 132 ~~~g~~~~A~~~f~~m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 132 VRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred HhCCChHHHHHHHhcCC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 99999999999999987 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHH
Q 001911 361 SMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEML 440 (997)
Q Consensus 361 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~ 440 (997)
..|.+.|+.|++.+|++||.+|++.|++++|.++|++|.. ||.++||++|.+|++.|+ .++|.++|.+|.
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~------~~eAl~lf~~M~ 280 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGE------CLEGLELFFTMR 280 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCC------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999975 899999999999999887 899999999999
Q ss_pred HcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001911 441 NAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYT 520 (997)
Q Consensus 441 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 520 (997)
..|+.||..|++.++.++++.|+++.|.+++..|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 468999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 521 YTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCK 600 (997)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 600 (997)
|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|++|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001911 601 AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDAL 680 (997)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 680 (997)
.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.. ++.||..+|+.+
T Consensus 437 ~g~~~~A~~vf~~m~--------------------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 437 CKCIDKALEVFHNIP--------------------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred cCCHHHHHHHHHhCC--------------------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 999999999999984 67889999999999999999999999999986 589999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 681 IDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT 760 (997)
Q Consensus 681 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 760 (997)
+.+|++.|+.+.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+||.||.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 58999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 761 EEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS-SKGCAPNFVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 761 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 689999999999999999999999999999999
Q ss_pred HHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch
Q 001911 840 MKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR 919 (997)
Q Consensus 840 m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 919 (997)
|. ..|+..+|..|+.+|..+|+.+.|..+.+++.+..|+ +.
T Consensus 651 m~------------------------------------~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~---~~ 691 (857)
T PLN03077 651 MP------------------------------------ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN---SV 691 (857)
T ss_pred CC------------------------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---Cc
Confidence 84 2588899999999999999999999999999988876 78
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 920 NSTLLLIESLSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 920 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
..|..|++.|...|+|++|.++.+.|.++|+.+++
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 88999999999999999999999999999988874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-80 Score=755.18 Aligned_cols=672 Identities=17% Similarity=0.234 Sum_probs=642.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh---CCCCCCHHHHHHH
Q 001911 232 KPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK---EEFVPDTVLYTKM 308 (997)
Q Consensus 232 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~l 308 (997)
.|+..++|.++.++++.|++++|..+|++|.+.|+.|+..+|..++..+.+.+.++.|.+++.. .+..++...+|.|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999998875 5667899999999
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 309 ISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDY 388 (997)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 388 (997)
|.+|++.|+++.|.++|++|. .||.++|+++|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999997 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHH
Q 001911 389 SYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAY 468 (997)
Q Consensus 389 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (997)
..+.+++..|.+.|+.||..+||+||.+|++.|+ ++.|.++|++|. .+|..+|+.++.+|++.|++++|+
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~------~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGD------VVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC------HHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999887 899999999996 467889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 001911 469 NVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEG 548 (997)
Q Consensus 469 ~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 548 (997)
++|++|...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-- 351 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-- 351 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHH
Q 001911 549 CDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFR 628 (997)
Q Consensus 549 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 628 (997)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.+
T Consensus 352 --~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g---------- 419 (857)
T PLN03077 352 --KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG---------- 419 (857)
T ss_pred --CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC----------
Confidence 69999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred HhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 629 VLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPN 708 (997)
Q Consensus 629 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 708 (997)
..|+..+|++|+++|++.|++++|.++|++|. .+|.++|+++|.+|++.|+.++|+.+|++|.. ++.||
T Consensus 420 ------~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 420 ------LISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred ------CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 78999999999999999999999999999997 57889999999999999999999999999986 58999
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 709 VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 709 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
..||+.++.+|++.|.++.+.+++..+.+.|+.+|..++|+|+++|++.|++++|.++|+++ .||..+||++|.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 5799999999999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.+
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~------------------------ 619 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY------------------------ 619 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh------------------------
Confidence 99999999999999999999999999999999999999999999999999998543
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+..|+..+|+.++++|++.|++++|.+++++|.- .|+..+|..|+.+|...|+.+.|....+++.+
T Consensus 620 --------gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~-----~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~- 685 (857)
T PLN03077 620 --------SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI-----TPDPAVWGALLNACRIHRHVELGELAAQHIFE- 685 (857)
T ss_pred --------CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-
Confidence 5689999999999999999999999999999952 35899999999999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 949 DGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 949 ~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+.|+ ...|..|+++|...|+|++|.++.+.|.+.|+.
T Consensus 686 -l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 686 -LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred -hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 7786 778999999999999999999999999888765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=626.56 Aligned_cols=548 Identities=20% Similarity=0.272 Sum_probs=478.0
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 231 YKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGF-SMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMI 309 (997)
Q Consensus 231 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li 309 (997)
..++...|..++..+++.|++++|.++|++|.+.|+ .++..+++.++..|++.|.+++|.++|+.+. .||..+||.+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-~pd~~Tyn~LL 444 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-NPTLSTFNMLM 444 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 456778899999999999999999999999999986 4677788889999999999999999999876 49999999999
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 310 SGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYS 389 (997)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 389 (997)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHH
Q 001911 390 YAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYN 469 (997)
Q Consensus 390 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (997)
+|.++|++|.+.|+.||.++||.||.+|| +.|++++|.+
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~-----------------------------------------k~G~~deA~~ 563 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACG-----------------------------------------QSGAVDRAFD 563 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----------------------------------------HCCCHHHHHH
Confidence 99999999999999999999999998875 6688889999
Q ss_pred HHHHHHH--CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001911 470 VIREMMS--KGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKE 547 (997)
Q Consensus 470 ll~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 547 (997)
+|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 564 lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 9999876 57889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHH
Q 001911 548 GCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYF 627 (997)
Q Consensus 548 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 627 (997)
|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--------- 714 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--------- 714 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred HHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 628 RVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNP 707 (997)
Q Consensus 628 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 707 (997)
..||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+.|
T Consensus 715 -------~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 715 -------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred -------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 708 NVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMID 787 (997)
Q Consensus 708 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 787 (997)
|..+|++++..|. +++++|..+.+.+..- +. .......+..++|..+|++|.+.|+.||..||+.++.
T Consensus 788 d~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 788 NLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLG 855 (1060)
T ss_pred CHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999999886554 2455555554443321 10 0111122344678888899988888889888988888
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 001911 788 GFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVA 850 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 850 (997)
++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|...+..|+..
T Consensus 856 cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 856 CLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888888888888888888777788888888888887432 367888999988887777654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=614.99 Aligned_cols=544 Identities=21% Similarity=0.304 Sum_probs=459.0
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 001911 267 SMDGFTLGCFAYSLCKAGRWKEALELIEKE---E-FVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRI 342 (997)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 342 (997)
.++...|..+++.+++.|++++|+++|+++ + ..++..+++.++.+|++.|.+++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 345556666666666666666666666652 2 234555666666666666666666666666653 66666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCC
Q 001911 343 LLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNED 422 (997)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 422 (997)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy----- 517 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC----- 517 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666664
Q ss_pred CCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 001911 423 LPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKA 502 (997)
Q Consensus 423 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 502 (997)
++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|
T Consensus 518 ------------------------------------~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 518 ------------------------------------ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred ------------------------------------HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001911 503 FLLFQEMKR--NGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETML 580 (997)
Q Consensus 503 ~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 580 (997)
.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999986 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHH
Q 001911 581 SKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHD 660 (997)
Q Consensus 581 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 660 (997)
+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.+ ..|+..+|+.+|.+|++.|++++|.+
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G----------------~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG----------------IKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------------CCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999998765 78999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001911 661 LLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSY 740 (997)
Q Consensus 661 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 740 (997)
+|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 706 lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001911 741 APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVL 820 (997)
Q Consensus 741 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 820 (997)
.||..+|+.++..|. +++++|.++.+.+... +. .......+..++|+.+|++|.+.|+.||..||+.+
T Consensus 786 ~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 786 KPNLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred CCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999999986544 3566666655444321 10 11112233456799999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP 883 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 883 (997)
+.++++.+..+.+..+++.|.....+++..+|.++++++.+...+|..++++|...|+.|+..
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999888899999999999999766678999999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=575.33 Aligned_cols=471 Identities=23% Similarity=0.315 Sum_probs=435.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHH
Q 001911 202 LLNVLIHKCCRNGFWNVALEELGRLKDFG-YKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSL 280 (997)
Q Consensus 202 ~~~~li~~y~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 280 (997)
.|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|..++..|.+.|+.||..+++.++++|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 59999999999999999999999998764 78999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHH
Q 001911 281 CKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVL 360 (997)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (997)
++.|++++|.++|+++. .||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++
T Consensus 169 ~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred hcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999986 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHH
Q 001911 361 SMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEML 440 (997)
Q Consensus 361 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~ 440 (997)
..+.+.|+.||..+|++||++|+++|++++|.++|++|.. +|.++||+||.+|+
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~---------------------- 301 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYA---------------------- 301 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999974 89999999998875
Q ss_pred HcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001911 441 NAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYT 520 (997)
Q Consensus 441 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 520 (997)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+
T Consensus 302 -------------------~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 302 -------------------LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred -------------------hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 521 YTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCK 600 (997)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 600 (997)
|+.|+++|++.|++++|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999974 69999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001911 601 AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDAL 680 (997)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 680 (997)
.|.+++|.++|+.|.+.. ++.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|
T Consensus 439 ~g~~~~a~~~f~~m~~~~---------------g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~L 500 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENH---------------RIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAAL 500 (697)
T ss_pred CCcHHHHHHHHHHHHHhc---------------CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 999999999999997642 36889999999999999999999999888776 457888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001911 681 IDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYA 741 (997)
Q Consensus 681 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 741 (997)
+.+|...|+++.|..+++++.+.++. +..+|..+++.|++.|++++|.++++.|.+.|+.
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 88888888888888888888765432 4567777777777777777777777777777664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=575.66 Aligned_cols=587 Identities=21% Similarity=0.295 Sum_probs=499.9
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 299 VPDTVLYTKMISGLCEASLFEEAMDLLNRMRARS-CIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHS 377 (997)
Q Consensus 299 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 377 (997)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.+++..|.+.|+.||+.+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 5677899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHH
Q 001911 378 LIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQC 457 (997)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 457 (997)
|+.+|++.|++++|.++|++|.+ ||.++||++|.+|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~--------------------------------------- 200 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLV--------------------------------------- 200 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHH---------------------------------------
Confidence 99999999999999999999975 89999999998865
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
+.|++++|+++|++|.+.|..|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|
T Consensus 201 --~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 201 --DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred --HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGN 617 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 617 (997)
.++|++|.+ +|.++||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.
T Consensus 279 ~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 279 RCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999999964 5899999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 618 AEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVF 697 (997)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 697 (997)
+ ..||..+|++|+++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|
T Consensus 355 g----------------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 355 G----------------FPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred C----------------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 5 78999999999999999999999999999996 578999999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 001911 698 SKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLE-DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY 776 (997)
Q Consensus 698 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 776 (997)
++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~ 491 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFK 491 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCC
Confidence 9999999999999999999999999999999999999986 589999999999999999999999999998765 578
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV 855 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 855 (997)
|+..+|++|+.+|..+|+++.|..+++++.+. .| +..+|..|+++|++.|++++|.+++++|.+.+...... +.++
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g-~s~i 568 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA-CTWI 568 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC-eeEE
Confidence 99999999999999999999999999999754 56 47799999999999999999999999999887543221 1111
Q ss_pred ---------HHh-----HhH-hHHHHHHHHHHhccCCCCCChhhHH-HHHH------HHHhcCCHHHHHHHHHHHhcCCC
Q 001911 856 ---------IEG-----FSR-EFIVSLGLVNEMGKTDSVPIVPAYR-ILID------HYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 856 ---------~~~-----~~~-~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~------~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
+.+ ..+ -+....++..+|...|..|+..... .+-. .+....++.-|..+ ...+|
T Consensus 569 ~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l----~~~~~ 644 (697)
T PLN03081 569 EVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL----INTSE 644 (697)
T ss_pred EECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC----ccCCC
Confidence 001 011 1334456777888888888754211 0000 01111111111111 11222
Q ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 001911 914 NSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 914 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~ 970 (997)
+ +-..+...+...++...|.++..++..+.+.- |..-++|.-++-|..|+|
T Consensus 645 ~------~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~ 696 (697)
T PLN03081 645 W------TPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDY 696 (697)
T ss_pred C------CeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccccccc
Confidence 2 11223445556799999999999988877544 666677777777777764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=439.03 Aligned_cols=798 Identities=15% Similarity=0.068 Sum_probs=601.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcC
Q 001911 135 VVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNG 214 (997)
Q Consensus 135 ~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 214 (997)
+..++...++++.|...|.-... .....+...+..+..++...|+++.|...++.+...++... .++..++..+...|
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~~ 173 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTL-LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL-YAKLGLAQLALAEN 173 (899)
T ss_pred HHHHHHHCCCHHHHHHhhccccc-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHCC
Confidence 33445556677777665532211 12233455666777777777777777777777765554332 35677777777778
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 215 FWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIE 294 (997)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (997)
++++|+++++++.+.. +++...+..+...+...|+++.|...|+++.+.+ +.+..++..++..+...|++++|...++
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 251 (899)
T TIGR02917 174 RFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHAD 251 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888777776643 4456667777777777788888888887777654 3456667777777777788888877776
Q ss_pred hC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 001911 295 KE-EFVP-DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPN-VVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPS 371 (997)
Q Consensus 295 ~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 371 (997)
.. ...| +...+......+...|++++|+..|+++.+.+ |+ ...+..+...+...|++++|...+..+.+.. +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 328 (899)
T TIGR02917 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNS 328 (899)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 51 1112 22333334445566777888888887777653 33 2333444555667788888888888877654 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccch
Q 001911 372 PRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINV 451 (997)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 451 (997)
...+..+...+.+.|++++|...++.+.... ..+...++.+...+...++ ++.|.+.|+++.... +.+...+
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~-~~~~~~~ 400 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD------FEKAAEYLAKATELD-PENAAAR 400 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 6667777788888888888888888877643 2345666666666666555 778888888776653 2234455
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 001911 452 SNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKA 531 (997)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 531 (997)
..+..++...|++++|.+.++.+..... ........++..+.+.|++++|..+++.+.... +.+..++..+...+...
T Consensus 401 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhC
Confidence 6677777788888888888888877541 223345556677788888888888888887653 34677888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 532 GLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIY 611 (997)
Q Consensus 532 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 611 (997)
|++++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...+
T Consensus 479 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888876433 56667777888888888888888888888764 456777888888888888888888888
Q ss_pred HHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 001911 612 ARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLD 691 (997)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 691 (997)
.++.... +.+...+..++..|.+.|++++|.++++.+.... +.+..+|..+...|...|+++
T Consensus 557 ~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 557 EKAAELN-----------------PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHhC-----------------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 8886653 4566678888899999999999999999998755 667788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 692 EAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMME 771 (997)
Q Consensus 692 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 771 (997)
+|...|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999887543 66778888999999999999999999988764 4567888999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhh
Q 001911 772 EKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAG 851 (997)
Q Consensus 772 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 851 (997)
+.+ +++...+..+...+...|++++|++.|+++... .|+..++..++.++.+.|++++|...++++.... |.+...
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 874 447778888888999999999999999999886 4666778889999999999999999999988764 455555
Q ss_pred HHHHHHhHh--HhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 001911 852 YRKVIEGFS--REFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESL 929 (997)
Q Consensus 852 ~~~~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 929 (997)
+..+...+. .+...|...+.++.... +++...++.++..+...|+ ++|++.++++....|+ ++..+..++.++
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~---~~~~~~~~~~~~ 847 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN---IPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC---CcHHHHHHHHHH
Confidence 555544443 46778888888887654 3456688889999999999 8899999999988765 778888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 930 SLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 930 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
...|++++|.+.++++++. .| +..++..++.+|++.|++++|.+++++|++
T Consensus 848 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999994 46 688999999999999999999999998863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=435.24 Aligned_cols=803 Identities=13% Similarity=0.035 Sum_probs=653.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcC
Q 001911 135 VVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNG 214 (997)
Q Consensus 135 ~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 214 (997)
+..++...++.+.|...|.-+... + .++......+..++...|+++.|...+..............+..+...|.+.|
T Consensus 62 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 62 LGKIYLALGDYAAAEKELRKALSL-G-YPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-C-CChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcC
Confidence 555666788889998888876654 2 23455666778888899999999888877654444445567888899999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 215 FWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIE 294 (997)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (997)
++++|...|+++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 140 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 140 QLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999988755 3346678888888999999999999999988764 4567788888889999999999999988
Q ss_pred h-CCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 001911 295 K-EEF-VPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSP 372 (997)
Q Consensus 295 ~-~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 372 (997)
+ ... +.+..++..++..+...|++++|...++.+.+.... +...+......+...|++++|...++.+.+.+. .+.
T Consensus 218 ~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~ 295 (899)
T TIGR02917 218 KAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYL 295 (899)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-Cch
Confidence 7 222 346778888899999999999999999999876422 233333344455678999999999999887652 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchh
Q 001911 373 RIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVS 452 (997)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 452 (997)
..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...++ ++.|...+..+.... +.+...+.
T Consensus 296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~------~~~A~~~~~~~~~~~-~~~~~~~~ 367 (899)
T TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGR------VDEAIATLSPALGLD-PDDPAALS 367 (899)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC------HHHHHHHHHHHHhcC-CCCHHHHH
Confidence 445566777889999999999999988753 2344555666666666665 788999998887654 33456677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 001911 453 NFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAG 532 (997)
Q Consensus 453 ~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 532 (997)
.+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.... .......++..+.+.|
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC
Confidence 78888999999999999999998763 335566777888888999999999999998876533 3456667888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001911 533 LIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYA 612 (997)
Q Consensus 533 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 612 (997)
++++|..+++.+.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++
T Consensus 446 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998764 3477889999999999999999999999998764 4566778888899999999999999999
Q ss_pred HHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001911 613 RMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDE 692 (997)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 692 (997)
++.... +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|...|++++
T Consensus 524 ~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 524 KVLTID-----------------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHhC-----------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHH
Confidence 998753 5567788899999999999999999999998776 5677788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 693 AQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEE 772 (997)
Q Consensus 693 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 772 (997)
|..+++.+.+..+ .+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.+
T Consensus 586 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999988754 477889999999999999999999999998764 45677888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 001911 773 KGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGY 852 (997)
Q Consensus 773 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 852 (997)
.. +.+..++..++..+...|++++|.++++.+.+.+ .++...+..+...+...|++++|...++++....... ..+
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHH
Confidence 63 3368899999999999999999999999999874 4477888999999999999999999999998765333 333
Q ss_pred HHHHHhHh--HhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 001911 853 RKVIEGFS--REFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLS 930 (997)
Q Consensus 853 ~~~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 930 (997)
..+...+. .+..+|...+.++.... +.+...+..++..|...|++++|++.|+++.+..|. +..++..+++.+.
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 815 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---NAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Confidence 33433333 36778888888877554 345668889999999999999999999999988765 8889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 931 LARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 931 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
..|+ ++|+..++++.+ ..|+ +..+..++.+|...|++++|.++++++.+.+..
T Consensus 816 ~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 816 ELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred hcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999 889999999999 5675 778889999999999999999999999987654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-27 Score=293.59 Aligned_cols=672 Identities=14% Similarity=0.063 Sum_probs=456.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHh
Q 001911 203 LNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCK 282 (997)
Q Consensus 203 ~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 282 (997)
+-..++.+-..++.+.|.+.++++.... +.+..++..++..+.+.|+.++|...++...+.. |+...+..
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~------- 100 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRS------- 100 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHH-------
Confidence 3444555666788888888888877643 2346667777777788888888888888887764 22211110
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCChhHHHHHHH
Q 001911 283 AGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVV-TFRILLCGCLRKRQLGRCKRVLS 361 (997)
Q Consensus 283 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~ 361 (997)
+...+.. ..|+......+...+.+.|++++|++.|+++.... +|+.. ............|+.++|...++
T Consensus 101 ------~~~~~~~--~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~ 171 (1157)
T PRK11447 101 ------SRTTMLL--STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQ 171 (1157)
T ss_pred ------HHHHHHh--cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHH
Confidence 0001110 13455455666667778888888888888877653 33321 11111112224578888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHH
Q 001911 362 MMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLN 441 (997)
Q Consensus 362 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~ 441 (997)
.+.+.. +.++..+..+...+...|+.++|++.++++.... +.... .+...+..+..
T Consensus 172 ~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~~~~---------------------aa~~~~~~l~~ 227 (1157)
T PRK11447 172 RLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AGRDA---------------------AAQLWYGQIKD 227 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--CchHH---------------------HHHHHHHHHhc
Confidence 888764 4456777788888888888888888888886531 11100 00000011111
Q ss_pred cCcccc-ccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001911 442 AGVVLN-KINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYT 520 (997)
Q Consensus 442 ~g~~~~-~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 520 (997)
.+..+. ...+..++..+-.....+.|...+..+......|+... ......+...|++++|+..|++..+.... +..+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a 305 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEA 305 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 111110 01111122222233345667777766654422333222 22345566788899999999888876432 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 001911 521 YTILIDNFCKAGLIEQARNWFDEMVKEGCDPN-VVTYT------------ALIHAYLKARKPSQANELFETMLSKGCIPN 587 (997)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~------------~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~ 587 (997)
+..+...+.+.|++++|+..|++..+...... ...|. .....+.+.|++++|+..|+++++.. +.+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 88888888899999999999988887643221 11121 22345678899999999999988774 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001911 588 IVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSV 667 (997)
Q Consensus 588 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 667 (997)
...+..+...+...|++++|++.|+++.... +.+...+..+...|. .++.++|..+++.+..
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----------------p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-----------------PGNTNAVRGLANLYR-QQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCH
Confidence 6677788888999999999999999887653 344555666666664 4578888888876543
Q ss_pred cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001911 668 VGC--------EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 668 ~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
... ......+..+...+...|++++|+..|++.++..+. +...+..+...|.+.|++++|...++++.+..
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 210 011223556677788899999999999999988654 56677888889999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 001911 740 YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVV---------TYTAMIDGFGKVGKVDKCLELLRQMSSKGC 810 (997)
Q Consensus 740 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 810 (997)
+.+...+..+...+.+.|+.++|...++.+......++.. .+..+...+...|+.++|+++++. .
T Consensus 526 -P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 526 -PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred -CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 3345555555566778899999999988765432222221 223456778899999999998872 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHH
Q 001911 811 APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILID 890 (997)
Q Consensus 811 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 890 (997)
+++...+..+...+.+.|++++|+..+++..+.. +.+...+..++.
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----------------------------------P~~~~a~~~la~ 645 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----------------------------------PGNADARLGLIE 645 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHH
Confidence 3466778889999999999999999999987643 233567888999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDG--SP---ELSTFVHLIKGLI 965 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~y~ 965 (997)
+|...|++++|++.++++.+..|. +...+..++.++...|++++|.+.++++++..- .| +..++.+++.+|.
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATAND---SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999887654 677888899999999999999999999988421 12 1246778899999
Q ss_pred hcCCHHHHHHHHHHhhc
Q 001911 966 RVNKWEEALQLSYSICH 982 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~ 982 (997)
..|++++|+..+++.+.
T Consensus 723 ~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 723 QTGQPQQALETYKDAMV 739 (1157)
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999999998863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-26 Score=290.03 Aligned_cols=659 Identities=14% Similarity=0.099 Sum_probs=428.5
Q ss_pred HHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhH------------
Q 001911 171 LVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIY------------ 238 (997)
Q Consensus 171 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~------------ 238 (997)
.+++....++.+.|.+.+.++...++.. ..++..++..+.+.|+.++|.+.++++.+.. |+...+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 3456666788889999998887766654 3568888899999999999999999998755 443222
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHH
Q 001911 239 -----NALIQVFLRADRLDTAYLVYREMLDAGFSMDGF-TLGCFAYSLCKAGRWKEALELIEK-EEFVP-DTVLYTKMIS 310 (997)
Q Consensus 239 -----~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~li~ 310 (997)
..+...+.+.|++++|...|+.+.+.+ +++.. ............|+.++|++.+++ ....| +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 112223445555555555555554432 11111 000111111123444444444443 11112 2333444444
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 001911 311 GLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPS-PRIFHSLIHAYCRSGDYS 389 (997)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~ 389 (997)
.+...|++++|++.|+++.... +.. ...+...+..+...+..+. ...+...+..+-....+.
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 4444444444444444443321 100 0001111111111111110 111111111111111222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHH
Q 001911 390 YAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYN 469 (997)
Q Consensus 390 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (997)
.|...+.++......|+.. .......+...|++++|+.
T Consensus 253 ~A~~~L~~~~~~~~dp~~~------------------------------------------~~~~G~~~~~~g~~~~A~~ 290 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFR------------------------------------------ARAQGLAAVDSGQGGKAIP 290 (1157)
T ss_pred HHHHHHHHHHHhccCcchH------------------------------------------HHHHHHHHHHCCCHHHHHH
Confidence 3333333322211111110 0122345667899999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHHcCCHHH
Q 001911 470 VIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIP-DVYTY------------TILIDNFCKAGLIEQ 536 (997)
Q Consensus 470 ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~------------~~li~~~~~~g~~~~ 536 (997)
.|++.++.. +.+...+..+...+.+.|++++|+..|++..+..... ....| ......+.+.|++++
T Consensus 291 ~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~e 369 (1157)
T PRK11447 291 ELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQ 369 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHH
Confidence 999998863 3366778888889999999999999999988764322 11111 123456778999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
|+..|+++.+.... +...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.++|...++.+..
T Consensus 370 A~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 370 AERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCH
Confidence 99999999987543 66777888999999999999999999998764 445666767777664 5678999988876543
Q ss_pred ccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 617 NAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMV 696 (997)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 696 (997)
.......+ .. ..-....+..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|...
T Consensus 447 ~~~~~~~~-~~-------~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 447 SQRRSIDD-IE-------RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHH-HH-------HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 21000000 00 00112245667788899999999999999999875 45677788899999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHHcCCHHHHHHHH
Q 001911 697 FSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV---------IYTEMIDGLIKVGKTEEAYKVM 767 (997)
Q Consensus 697 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~~~ 767 (997)
++++.+..+. +...+..+...+...++.++|+..++.+......++.. .+..+...+...|+.++|.+++
T Consensus 518 l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999987543 44555555566778999999999998875433222221 1234567788999999999998
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001911 768 LMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWP 846 (997)
Q Consensus 768 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 846 (997)
+. .+++...+..+...+.+.|++++|++.|++.++. .| +...+..++.+|...|++++|+..++...+..
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-- 667 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-- 667 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--
Confidence 72 2446667788899999999999999999999986 46 68899999999999999999999999876532
Q ss_pred CchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc---chhhHH
Q 001911 847 THVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAA---SRNSTL 923 (997)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~ 923 (997)
+.+...+..++.++...|++++|.++++++....|...+ +...+.
T Consensus 668 --------------------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~ 715 (1157)
T PRK11447 668 --------------------------------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLR 715 (1157)
T ss_pred --------------------------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHH
Confidence 122345677889999999999999999999876543222 335666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 924 LLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++..+...|++++|++.|++++.
T Consensus 716 ~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 716 DAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 778899999999999999999974
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-24 Score=256.26 Aligned_cols=683 Identities=13% Similarity=0.023 Sum_probs=432.8
Q ss_pred HcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 001911 176 ECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAY 255 (997)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 255 (997)
...|+++.|...|+...+.+|.. ..++..|...|.+.|++++|+..+++..+. .|+...|..++..+ ++.++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 34589999999999998888877 568899999999999999999999999874 45555555544333 8899999
Q ss_pred HHHHHHHHCCCCCCchhHHHHHHH--------HHhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCChHHHHHHHH
Q 001911 256 LVYREMLDAGFSMDGFTLGCFAYS--------LCKAGRWKEALELIEKEEFVPDTVLY-TKMISGLCEASLFEEAMDLLN 326 (997)
Q Consensus 256 ~~~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~ 326 (997)
.+|+++.+.. +.+..++..+... |.+.+...+|++ .......|+.... -.+...|.+.|++++|++++.
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999875 4455566666665 788877777777 4444444445444 444899999999999999999
Q ss_pred HHHhCCCCCcHHhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-
Q 001911 327 RMRARSCIPNVVTFRILLCGCLR-KRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQ- 404 (997)
Q Consensus 327 ~m~~~~~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 404 (997)
++.+.+. .+..-...+-.++.. .++ +.+..++.. .+..++.....++..|.+.|+.++|.++++++...-..
T Consensus 207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9999863 334445566667776 466 777777443 33467889999999999999999999999998764333
Q ss_pred CCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCcccc-ccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 001911 405 PGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLN-KINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDT 483 (997)
Q Consensus 405 p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~ 483 (997)
|+..+|.-++.-...... .+..-|.+ ...++ ...+-..+..+.+.+.++-+.++.. +.|..
T Consensus 281 ~~~~~~~~~l~r~~~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 342 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPV--------QALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPAN 342 (987)
T ss_pred CccHHHHHHHHhccCchh--------hhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcc
Confidence 666666555543321100 00000000 00000 0011123455566677775554422 12222
Q ss_pred hhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHH
Q 001911 484 STYSKVIGYLC--DASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKE-G-CDPNVVTYTAL 559 (997)
Q Consensus 484 ~~~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~~~~l 559 (997)
.. ..++... ..+...++...++.|.+... .+......+.-...+.|+.++|.++|+..... + -.++....+-+
T Consensus 343 ~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 343 EM--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred hH--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 22 1222222 23555566666666655421 24555555555566777777777777776652 1 12233344456
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhccCCCchhHHHHHhccCCCC
Q 001911 560 IHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIER---ACRIYARMKGNAEISDVDIYFRVLDNNCKE 636 (997)
Q Consensus 560 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (997)
+..|.+.+......+...-.. +++...- +.-.|+..+ +...+...... .+
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~-----------------~p 472 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGIADNCPAIVRLLGD-----------------MS 472 (987)
T ss_pred HHHHHhCCcccchHHHHHhcc----ccccchh------HHHHhhhhhhhhhHHHHHHhccc-----------------CC
Confidence 666666665333222221111 1111111 111222322 22233333221 13
Q ss_pred C--CceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 001911 637 P--NVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGS 714 (997)
Q Consensus 637 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 714 (997)
+ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... .|+...+..
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~ 547 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLA 547 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHH
Confidence 3 45566666666665 67777888777766553 45444334444556778888888888876554 233444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 001911 715 LIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK 794 (997)
Q Consensus 715 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 794 (997)
+...+.+.|+.++|...+++.++.. +.+...+..+...+...|++++|...+++..+. .|+...|..+...+.+.|+
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence 6667777888888888888877654 223333333333444558888888888887764 4567777777778888888
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 795 VDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 795 ~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
+++|+..+++.+.. .| +...+..+..++...|++++|+..+++..+..
T Consensus 625 ~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----------------------------- 673 (987)
T PRK09782 625 VPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL----------------------------- 673 (987)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------
Confidence 88888888888775 45 46677777778888888888888887776532
Q ss_pred ccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 874 GKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 874 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
|+ ...+..++.++...|++++|+..++++.+..|+ +..+....++......+++.|.+.+++... +.|
T Consensus 674 ------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~---~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~ 742 (987)
T PRK09782 674 ------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN---QALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSF 742 (987)
T ss_pred ------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCc
Confidence 43 446777888888888888888888888877765 556666777777777778888888888777 667
Q ss_pred CHHHHHHHHHHHHhcCCH
Q 001911 953 ELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 953 ~~~~~~~l~~~y~~~g~~ 970 (997)
+..+....+.++...+++
T Consensus 743 ~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 743 DSSIGLRSGAMSTANNNV 760 (987)
T ss_pred cchhccccchHhhhcccc
Confidence 644556666666655544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-23 Score=243.36 Aligned_cols=637 Identities=11% Similarity=0.015 Sum_probs=382.8
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHH
Q 001911 211 CRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEAL 290 (997)
Q Consensus 211 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 290 (997)
...|++++|+..|++..+.. +-+..++..|..++...|+.++|....++..+.. +.|...+..+ ..+ +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHH
Confidence 33488888888888877644 2236667777777778888888877777777653 1222222222 111 4444544
Q ss_pred HHHHh-CCCCC-CHHHHHHHHHH--------HHccCChHHHHHHHHHHHhCCCCCcHHhHHHH-HHHHHhcCChhHHHHH
Q 001911 291 ELIEK-EEFVP-DTVLYTKMISG--------LCEASLFEEAMDLLNRMRARSCIPNVVTFRIL-LCGCLRKRQLGRCKRV 359 (997)
Q Consensus 291 ~~~~~-~~~~p-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a~~~ 359 (997)
.++++ ....| +...+..+... |.+. ++|.+.++ .......|+....... ...|.+.|++++|..+
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 44444 11122 12222222222 3333 22222222 2222112222222222 4444444555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHH
Q 001911 360 LSMMITEGCYPSPRIFHSLIHAYCR-SGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAE 438 (997)
Q Consensus 360 ~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~ 438 (997)
+..+.+.+ +.+......|..+|.. .++ +.|..+++.
T Consensus 205 L~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----------------------------------------- 241 (987)
T PRK09782 205 YNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----------------------------------------- 241 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch-----------------------------------------
Confidence 55554443 2223333344444444 233 333333221
Q ss_pred HHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCC
Q 001911 439 MLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFI-PDTSTYSKVIGYLCDASEAE-KAFLLFQEMKRNGLIP 516 (997)
Q Consensus 439 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~g~~~ 516 (997)
...-+......+...|.+.|+.++|.++++++...-.. |+..++..++ .+.+... .|..-|.+ + ..+
T Consensus 242 ----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~--~--~~~ 310 (987)
T PRK09782 242 ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTV--Q--FAD 310 (987)
T ss_pred ----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhh--h--hHH
Confidence 11123334445556667778888888888877554222 4444444333 2332221 11111111 0 011
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 517 D-VYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALI 595 (997)
Q Consensus 517 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 595 (997)
+ ....-.++..+.+.++++.+.++.+ +.|.....-.-..+....+...++.+.+..|.+.. +-+....-.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~ 383 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLT 383 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 1 1112233666777777775554422 22333321111112223356666666666666542 33555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc-----------------------
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV----------------------- 652 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------------- 652 (997)
-...+.|+.++|.++|+......... ..+.....-++..|.+.
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDA--------------RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCccc--------------ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 55667777788888877775521100 01111222333333333
Q ss_pred --CChHHHH---HHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 001911 653 --HKVREAH---DLLDAMSVVGCEP--NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRL 725 (997)
Q Consensus 653 --g~~~~A~---~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 725 (997)
|+..++. +.+....... ++ +...|..+..++.. +++++|+..+.+..... |+......+...+...|++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCH
Confidence 2332222 2333333222 34 67778888887776 89999999888888764 5555544555666789999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001911 726 DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 805 (997)
++|...++++... +|+...+..+...+.+.|+.++|...+++..+... ++...+..+...+.+.|++++|+..+++.
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999998664 45555567778888999999999999999988642 23333334444455669999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhh
Q 001911 806 SSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPA 884 (997)
Q Consensus 806 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~ 884 (997)
++. .|+...+..+..++.+.|++++|...+++..... |+ ...
T Consensus 603 L~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-----------------------------------Pd~~~a 645 (987)
T PRK09782 603 LNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-----------------------------------PNNSNY 645 (987)
T ss_pred HHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------CCCHHH
Confidence 986 5788889999999999999999999999987643 44 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+..++..+...|++++|++.++++.+..|+ +...+..++.++...|++++|+..++++++ ..|+ ..+....+++
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~---~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPD---DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQ 720 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHH
Confidence 788999999999999999999999998876 889999999999999999999999999999 7797 6788899999
Q ss_pred HHhcCCHHHHHHHHHHhh
Q 001911 964 LIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~ 981 (997)
..+..+++.|.+-+++.-
T Consensus 721 ~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988877643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-23 Score=215.33 Aligned_cols=457 Identities=15% Similarity=0.127 Sum_probs=374.0
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
..+.|++++|++.....-... +.+......+-..+.+..+.+....--....+.. +.-..+|..+.+.+-..|++++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHH
Confidence 346799999999877665542 2222233333345556666666555444444442 22568899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTF-TALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
+.+++.+++...+ .+..|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+-..|++++|...|.+..+
T Consensus 136 l~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 136 LALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 9999999997544 6788999999999999999999999998876 4655443 4455666678999999999998877
Q ss_pred ccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 617 NAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMV 696 (997)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 696 (997)
.. +.-...|+.|...+-..|+...|+..|++....+ +.=...|-.|...|...+.+++|...
T Consensus 213 ~q-----------------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 213 TQ-----------------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hC-----------------CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 53 4456789999999999999999999999998764 33356788999999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 001911 697 FSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY 776 (997)
Q Consensus 697 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 776 (997)
+.+.....+. ....+..+...|..+|.++.|+..|++.++.. +.-...|+.|..++-..|++.+|...+++......
T Consensus 275 Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p- 351 (966)
T KOG4626|consen 275 YLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP- 351 (966)
T ss_pred HHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-
Confidence 9999887543 55677778888999999999999999999864 23367999999999999999999999999998632
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV 855 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 855 (997)
-.....+.|...|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|+..+++....
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------------ 417 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI------------ 417 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc------------
Confidence 25678889999999999999999999999984 675 678999999999999999999999998763
Q ss_pred HHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 856 IEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 856 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
.|+ ..+|+.+++.|-..|+.+.|++.|.+++..+|. -..++..|+.+|...|+
T Consensus 418 -----------------------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt---~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 418 -----------------------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT---FAEAHSNLASIYKDSGN 471 (966)
T ss_pred -----------------------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH---HHHHHhhHHHHhhccCC
Confidence 466 448999999999999999999999999998775 67889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 935 IDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 935 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..+|+.-|+.+++ +.|| +.++..|+.++.-..+|.+-.+-++++.+
T Consensus 472 i~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~s 518 (966)
T KOG4626|consen 472 IPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVS 518 (966)
T ss_pred cHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHHHHH
Confidence 9999999999999 8999 78898888888777777775555554443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-20 Score=204.86 Aligned_cols=564 Identities=13% Similarity=0.097 Sum_probs=397.8
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 318 FEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITE--GCYPSPRIFHSLIHAYCRSGDYSYAYKLL 395 (997)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 395 (997)
++.|...|....... ++|.-.+-.-.......|++-.|..+|...... .+.||+.+ .+.+.+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 588888898888764 445444333334445788999999999997654 45556543 3446677999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHH
Q 001911 396 SKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMM 475 (997)
Q Consensus 396 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~ 475 (997)
.+..+. .|+.+.-...+.-+- ........+..+..++...-
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~-------------------------------------l~~~d~~s~~~~~~ll~~ay 263 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVD-------------------------------------LNFNDSDSYKKGVQLLQRAY 263 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHH-------------------------------------HHccchHHHHHHHHHHHHHH
Confidence 999883 453333222222110 00113355677777777776
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 476 SKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIP--DVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNV 553 (997)
Q Consensus 476 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 553 (997)
... .-++...+.|.+.+.-.|+++.++.+...+...-... -...|-.+.++|-..|++++|..+|.+..+....--.
T Consensus 264 ~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 264 KEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred hhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence 543 3456678888889999999999999998887753211 1344677899999999999999999988876432113
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhccCCCchhHHHHH
Q 001911 554 VTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAG----DIERACRIYARMKGNAEISDVDIYFRV 629 (997)
Q Consensus 554 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~ 629 (997)
..+--+...|.+.|+++.+...|+...+.. +.+..+...+...|...+ ..+.|..++.......
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~----------- 410 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT----------- 410 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-----------
Confidence 344567888999999999999999998774 555677777777777664 5677777777776542
Q ss_pred hccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 001911 630 LDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAM----SVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEH-- 703 (997)
Q Consensus 630 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 703 (997)
+.|...|-.+...+-...-+.. +..|... ...+-.+.....|.+...+...|++.+|...|......
T Consensus 411 ------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 411 ------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred ------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 5667777777776665544433 6666544 34555677888999999999999999999999988765
Q ss_pred -CCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 001911 704 -GCNPNV------YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNV-VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC 775 (997)
Q Consensus 704 -g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 775 (997)
-..++. .+-..+...+-..++.+.|.+.|..+++.. |.- ..|--++......++..+|...++...+..
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 122233 233345566667789999999999998753 443 334444433344578889999999888752
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHh
Q 001911 776 YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAPNFVTYRVLINHCCAS------------GLLDEAHNLLEEMKQ 842 (997)
Q Consensus 776 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~l~~~~~~~------------g~~~~A~~~~~~m~~ 842 (997)
.-++..+..+...+.+...+..|.+-|.....+ ...+|..+...|.+.|... +..++|++.|.++.+
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 235556666666788888888888877777664 1235777777777755532 223334444444333
Q ss_pred cCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhH
Q 001911 843 TYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNST 922 (997)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 922 (997)
.+ +-+..+-+-++-.++..|++.+|..+|.+..+.-. ....+|
T Consensus 641 ~d----------------------------------pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~---~~~dv~ 683 (1018)
T KOG2002|consen 641 ND----------------------------------PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS---DFEDVW 683 (1018)
T ss_pred cC----------------------------------cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh---hCCcee
Confidence 21 22344556788889999999999999999987532 266799
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 923 LLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.+++.+|...|+|..|+++|+...++-..- +..+...|++++.+.|+|.+|.+.+......
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999875433 4889999999999999999999998776553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=209.72 Aligned_cols=437 Identities=14% Similarity=0.103 Sum_probs=358.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001911 486 YSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLK 565 (997)
Q Consensus 486 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 565 (997)
...|..-..+.|++.+|++.....-..+.. +....-.+-..+.+..+++.....-....+.. +.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 445666677889999999887766554322 22333334445666666776665555555443 2356789999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHH-
Q 001911 566 ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGA- 644 (997)
Q Consensus 566 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 644 (997)
.|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|....+. .|+.....+
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql------------------nP~l~ca~s~ 189 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL------------------NPDLYCARSD 189 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc------------------Ccchhhhhcc
Confidence 999999999999999874 345778999999999999999999999998874 455444333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 001911 645 LIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR 724 (997)
Q Consensus 645 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 724 (997)
+...+-..|++++|...+.+.++.. +-=.+.|+.|...+...|+...|+..|++..+..+. -...|..|...|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhc
Confidence 3344455899999999999888764 334677999999999999999999999999997644 45678889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001911 725 LDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 725 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 804 (997)
++.|...|.+..... +...+.+..|...|-.+|.++-|+..+++.++.... =+..|+.|..++-..|+..+|++.|.+
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 999999999988753 334577888888899999999999999999986322 367899999999999999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-h
Q 001911 805 MSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-V 882 (997)
Q Consensus 805 m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~ 882 (997)
.+.. .|+ ....+.|..+|...|.+++|..++....+-. |. .
T Consensus 346 aL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-----------------------------------p~~a 388 (966)
T KOG4626|consen 346 ALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-----------------------------------PEFA 388 (966)
T ss_pred HHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-----------------------------------hhhh
Confidence 9986 564 7788999999999999999999999877642 44 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
...+.|+..|..+|++++|+..|++++...|. -..++..++..|...|+...|++.|.+++. ++|. .++...|+
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~---fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPT---FADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLA 463 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCch---HHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHH
Confidence 46788999999999999999999999998876 678899999999999999999999999999 8898 78999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCccch
Q 001911 962 KGLIRVNKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
.+|-..|+..+|+.-++..+..+..|.+
T Consensus 464 si~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9999999999999999999888777754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-19 Score=195.41 Aligned_cols=706 Identities=14% Similarity=0.116 Sum_probs=387.5
Q ss_pred CHHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhcc------Cchhh-HHHH
Q 001911 131 SESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNE------DKEVL-GKLL 203 (997)
Q Consensus 131 ~~~~~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~------~~~~~-~~~~ 203 (997)
+++.|..+|..-..|.. +|..+..-|.+.|..++...+++.-... ++... -.++
T Consensus 26 D~~ev~~IL~~e~a~le-------------------~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~ 86 (1018)
T KOG2002|consen 26 DATEVLSILKAEQAPLE-------------------AWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKAL 86 (1018)
T ss_pred ChHHHHHHHHHhcCchh-------------------HHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHH
Confidence 56677777776544443 3555567778888888888888765411 11111 1345
Q ss_pred HHHHHHHHHcCC-----------hHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch
Q 001911 204 NVLIHKCCRNGF-----------WNVALEELGRLKDFGY-KPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGF 271 (997)
Q Consensus 204 ~~li~~y~~~g~-----------~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 271 (997)
+.+...|+..+. +..|.-+|........ .+...+.......+...-+++.|...|.-+++.. ++|..
T Consensus 87 ~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil 165 (1018)
T KOG2002|consen 87 DILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNIL 165 (1018)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchH
Confidence 555555544322 2233344444333221 1222222221111112222588888888887754 44554
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHHHHH--HHHHHccCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHH
Q 001911 272 TLGCFAYSLCKAGRWKEALELIEK-EEFVPDTVLYTKM--ISGLCEASLFEEAMDLLNRMRARSCIPNV-VTFRILLCGC 347 (997)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~ 347 (997)
.+..-.......|++..|+.+|.+ ..+.|...+=..+ ..++.+.|+.+.|+..|.+..+.. |+. .++..|.-.-
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHH
Confidence 444445555667889999998887 2222322222222 244558889999999999888764 433 2333332222
Q ss_pred Hh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCC
Q 001911 348 LR---KRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLP 424 (997)
Q Consensus 348 ~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 424 (997)
.. ...+..+.+.+....+.. +.|+++.+.|...|.-.|++..++.+...+...- .+.-+.
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-------~~~~~~--------- 306 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-------ENKSIK--------- 306 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-------hhhHHH---------
Confidence 22 233556666666666554 5578888888999999999999999888887521 000000
Q ss_pred CchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHH
Q 001911 425 ASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTST--YSKVIGYLCDASEAEKA 502 (997)
Q Consensus 425 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A 502 (997)
...+..+.+++-..|++++|...+.+..+. .+|.++ +.-+...+.+.|+++.+
T Consensus 307 -----------------------aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 307 -----------------------AESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred -----------------------HHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHH
Confidence 112344566677778888888887777665 344433 34456777777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001911 503 FLLFQEMKRNGLIPDVYTYTILIDNFCKAG----LIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFET 578 (997)
Q Consensus 503 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 578 (997)
...|+.+.+.. +.+..+...|...|...+ ..+.|..++....+.- +.|...|-.+...+.... +..++..|..
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~ 438 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGN 438 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHH
Confidence 88777777653 224566666666666554 4566666666666553 225566665555554333 3333555544
Q ss_pred HH----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCC
Q 001911 579 ML----SKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHK 654 (997)
Q Consensus 579 m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 654 (997)
.. ..+..+.+...|.+...+...|++++|...|...... +... ..++..
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~-----------~~~~--~n~de~-------------- 491 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK-----------LLEV--ANKDEG-------------- 491 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh-----------hhhh--cCcccc--------------
Confidence 32 3344456666666666666777777777666665431 0000 001110
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
-.++..+-..+...+-..++++.|.++|..+.+..+. -+..|..++-.--..+...+|...+..
T Consensus 492 ---------------~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 492 ---------------KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred ---------------ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 0111111222333344445555555555555554321 122222222111122444555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh------------ccCCHHHHHHH
Q 001911 735 MLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNVVTYTAMIDGFG------------KVGKVDKCLEL 801 (997)
Q Consensus 735 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~------------~~g~~~~A~~l 801 (997)
..+.. ..++..++.+.+.+.+...+.-|.+-|...... ...+|+.+..+|.+.|. ..+..++|+++
T Consensus 556 ~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 556 ALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 54432 334444444555555555555555544443332 11234444444444332 23455677777
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 802 LRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 802 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
|.+.+.. .| |...-+.+.-++...|++.+|..+|.+..+.. ..
T Consensus 635 y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~----------------------------------~~ 678 (1018)
T KOG2002|consen 635 YGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT----------------------------------SD 678 (1018)
T ss_pred HHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH----------------------------------hh
Confidence 7777765 34 66666677777777777777777777765531 12
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 959 (997)
..++|..++++|..+|++-.|+++|+...+..- ...+..+...|+.++...|++.+|...+..+.. ..|. +.....
T Consensus 679 ~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN 755 (1018)
T KOG2002|consen 679 FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-KKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFN 755 (1018)
T ss_pred CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhH
Confidence 234566777777777777777777777655421 123666777777777777777777777777776 5563 443333
Q ss_pred HHHHHH-------------------hcCCHHHHHHHHHHhhccCCc
Q 001911 960 LIKGLI-------------------RVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 960 l~~~y~-------------------~~g~~~eA~~~~~~~~~~~~~ 986 (997)
++-+.. ..+..++|.+++..|...+-.
T Consensus 756 ~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 756 LALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333332 345567777777777655443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-18 Score=205.20 Aligned_cols=184 Identities=17% Similarity=0.047 Sum_probs=82.8
Q ss_pred CChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 001911 653 HKVREAHDLLDAMSVVG--CEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALK 730 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 730 (997)
+++++|.+.|+.....+ .+.....++.+...+...|++++|+..+++.++..+. ....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 34445555555444432 1112333444444444455555555555554444221 23344444444444555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 001911 731 VISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC 810 (997)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 810 (997)
.|+++++.. +.+...|..+...+...|++++|...|++..+... .+...+..+...+.+.|++++|+..|++.+..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 555444432 22334444444444455555555555555444321 13334444444444455555555555544442
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 811 AP-NFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 811 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
.| +...+..+..++...|++++|...+++..
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 23 24444444445555555555555544443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-17 Score=195.82 Aligned_cols=254 Identities=13% Similarity=0.058 Sum_probs=162.5
Q ss_pred cCCHHHHHHHHHHHHHcCC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 687 VGKLDEAQMVFSKMLEHGC-NP-NVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAY 764 (997)
Q Consensus 687 ~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 764 (997)
.+++++|.+.|+++.+.+. .| ....+..+...+...|++++|+..+++.++.. +.+...|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777777776541 22 33455666666667777777777777776642 223446666666777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 765 KVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 765 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
..|+++.+... .+...|..+...+...|++++|+..|++.++. .| +...+..+..++.+.|++++|+..+++..+.
T Consensus 386 ~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 386 EDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777766532 24566666777777777777777777777664 34 4556666677777777777777777776654
Q ss_pred CCCCchhhHHHHHHhHh--HhHHHHHHHHHHhccCCCC--C---Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 001911 844 YWPTHVAGYRKVIEGFS--REFIVSLGLVNEMGKTDSV--P---IV-PAYRILIDHYIKAGRLEVALELHEEMTSFSSNS 915 (997)
Q Consensus 844 ~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~--p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 915 (997)
.|.....+..+...+. .++..|...+.+....... + +. ..++..+..+...|++++|+++++++.+.+|.
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~- 540 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE- 540 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-
Confidence 2444444444333222 2456666666554432211 0 10 11222223344568999999999999888765
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 916 AASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+..++..++.++...|++++|++.|+++.+.
T Consensus 541 --~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 --CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred --cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6678888999999999999999999999883
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-15 Score=164.51 Aligned_cols=680 Identities=12% Similarity=0.083 Sum_probs=358.5
Q ss_pred CCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 001911 178 DHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLV 257 (997)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 257 (997)
.|+.++|..++.++...++... ..|.+|...|-+.|+.+.++..+-.+.... +.|...|..+.......|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~-~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNP-IAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccch-hhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3666666666666655554433 356666666666666666665554444332 22335555555555556666666666
Q ss_pred HHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH
Q 001911 258 YREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNV 337 (997)
Q Consensus 258 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 337 (997)
|..+++.. +++...+---+..|-+.|+...|++.|.++.....+.|.
T Consensus 230 y~rAI~~~---------------------------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 230 YSRAIQAN---------------------------------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHHhcC---------------------------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 66655543 223333333445566667777777777777665321121
Q ss_pred ----HhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 338 ----VTFRILLCGCLRKRQLGRCKRVLSMMITE-GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNI 412 (997)
Q Consensus 338 ----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 412 (997)
.+...+++.+...++.+.|.+.++..... +-..+...++.++..|.+...++.|......+......+|..-|-+
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 22233345556666667777777776652 2234456677888888888888888888888876555566544421
Q ss_pred H------HHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHh
Q 001911 413 L------IGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFI--PDTS 484 (997)
Q Consensus 413 l------i~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~--p~~~ 484 (997)
- ...+|..++ +..++... ..+.-|+......+....++......... -+..
T Consensus 357 ~~~~~~~~~~~~~~~~--------------------~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~d 415 (895)
T KOG2076|consen 357 DERRREEPNALCEVGK--------------------ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVD 415 (895)
T ss_pred hhhccccccccccCCC--------------------CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHH
Confidence 1 111222221 11222222 23445555666666666666666666533 3445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001911 485 TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYL 564 (997)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 564 (997)
.|.-+..++...|++.+|+.+|..+......-+..+|-.+..+|...|.+++|...|+.++...+. +...--+|-..+-
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHH
Confidence 788888899999999999999999988755557788999999999999999999999998886432 4555666777888
Q ss_pred hcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCC
Q 001911 565 KARKPSQANELFETMLSK--------GCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKE 636 (997)
Q Consensus 565 ~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (997)
+.|+.++|.+.++.+..- +..|+........+.+.+.|+.++-..+-..|..... ..+. +.
T Consensus 495 ~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~------~~~~-----~f 563 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL------KKRY-----IF 563 (895)
T ss_pred hcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHH-----hc
Confidence 899999999999886521 2233333344445556666666664444444432110 0000 00
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHcCCCCCH-
Q 001911 637 PNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVF------SKMLEHGCNPNV- 709 (997)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~g~~p~~- 709 (997)
|+.. ++.. ......+.+........++.+-.+.++......-. .--...|+.-+.
T Consensus 564 ~~~~----------------k~r~--~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 564 PRNK----------------KKRR--RAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred chHH----------------HHHH--HhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 0000 0000 00000001111122222222222222211111100 001111111111
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCC--C-CH
Q 001911 710 -YTYGSLIDRLFKDKRLDLALKVISKMLEDSY--APNV---VIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCY--P-NV 779 (997)
Q Consensus 710 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~--p-~~ 779 (997)
..+..++.++++.++.++|..+...+..... .++. ..-...+.+.+..+++..|...++.|... +.. | -.
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1233444555566666666666655554311 1111 11223334444556666666666655543 111 1 11
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN--FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIE 857 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 857 (997)
..||...+...+.|+----..++..+... .|+ ..............+.+.-|+..+-+....
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~-------------- 769 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ-------------- 769 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHHh--------------
Confidence 23332333333333222222222222221 121 111111122223344555555544433322
Q ss_pred hHhHhHHHHHHHHHHhccCCCCCChhhHHHHH-HHH----------HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 001911 858 GFSREFIVSLGLVNEMGKTDSVPIVPAYRILI-DHY----------IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLI 926 (997)
Q Consensus 858 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~----------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 926 (997)
.|+.|..+.++ -++ .++-..-.++.++++..+...+ .....+..+++
T Consensus 770 ---------------------~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~-~~~QEa~YNig 827 (895)
T KOG2076|consen 770 ---------------------NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRC-EEKQEAFYNIG 827 (895)
T ss_pred ---------------------CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHH
Confidence 25544433222 111 1122344556666666554321 12566777789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-------CC--C--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 927 ESLSLARKIDKAFELYVDMIRKDG-------SP--E--LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 927 ~~~~~~g~~~~A~~~~~~~~~~~~-------~p--~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
.+|-..|-..-|+.+|+++++... .+ | ..+.+.|.-+|...|+..-|.+++++-+
T Consensus 828 Rayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 828 RAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred HHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 999999999999999999988320 11 1 3577889999999999999999988643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-17 Score=196.94 Aligned_cols=409 Identities=12% Similarity=0.044 Sum_probs=250.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 522 TILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKA 601 (997)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 601 (997)
.-.+....-.|+.++|++++.+..... +.+...+..+...+...|++++|.+++++.++.. +.+...+..++..+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334444444555555555555544311 1233334445555555555555555555544432 22334444444555555
Q ss_pred CCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 001911 602 GDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALI 681 (997)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 681 (997)
|++++|...++++.... +.+.. +..+...+...|+.++|...++++.+.. +.+...+..+.
T Consensus 97 g~~~eA~~~l~~~l~~~-----------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la 157 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-----------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYV 157 (765)
T ss_pred CCHHHHHHHHHHHHHhC-----------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 55555555555554432 23333 4445555555555555555555555443 23333444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHH-----HhcCCH---HHHHHHHHHHHhC-CCCCCHH-
Q 001911 682 DGFCKVGKLDEAQMVFSKMLEHGCNPNV------YTYGSLIDRL-----FKDKRL---DLALKVISKMLED-SYAPNVV- 745 (997)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~- 745 (997)
.++...|..+.|+..++.+.. .|+. .....++... ...+++ ++|++.++.+.+. ...|+..
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 555555555555555544332 1111 0111111111 112233 6788888888753 1122221
Q ss_pred HH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-----HH
Q 001911 746 IY----TEMIDGLIKVGKTEEAYKVMLMMEEKGCY-PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-----FV 815 (997)
Q Consensus 746 ~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~ 815 (997)
.+ ...+..+...|++++|+..|+++.+.+.+ |+.. ...+...|...|++++|+..|+++.+. .|. ..
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~ 311 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDE 311 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChH
Confidence 11 11123445779999999999999887532 3322 222567889999999999999998865 232 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh---hhHHHHHHHH
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV---PAYRILIDHY 892 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~ 892 (997)
....+..++...|++++|..+++++.... |.....+. .....|+. ..+..++..+
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~---------------------~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYG---------------------SPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecC---------------------CCCCCCCchHHHHHHHHHHHH
Confidence 56677778899999999999999987643 21110000 00113442 2456788899
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWE 971 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~ 971 (997)
...|++++|++.++++....|+ +...+..++..+...|++++|++.++++++ ..|| ...+..++..+.+.|+++
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~---n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPG---NQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHH
Confidence 9999999999999999988876 788999999999999999999999999999 7797 788999999999999999
Q ss_pred HHHHHHHHhhccC
Q 001911 972 EALQLSYSICHTD 984 (997)
Q Consensus 972 eA~~~~~~~~~~~ 984 (997)
+|..+++.++...
T Consensus 445 ~A~~~~~~ll~~~ 457 (765)
T PRK10049 445 QMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-17 Score=191.70 Aligned_cols=259 Identities=11% Similarity=0.018 Sum_probs=115.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCc
Q 001911 560 IHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNV 639 (997)
Q Consensus 560 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (997)
+..+.+.|++++|..+++...... +-+...+..++.+....|++++|...++++.... +.+.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-----------------P~~~ 110 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-----------------VCQP 110 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-----------------CCCh
Confidence 334444455555555555444432 1222233333334444555555555555544432 2333
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 001911 640 YTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRL 719 (997)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 719 (997)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l 187 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSF 187 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHH
Confidence 344444444555555555555555554432 2334444444555555555555555555444433221 1112111 124
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH--
Q 001911 720 FKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDK-- 797 (997)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-- 797 (997)
...|++++|...++.+.+....++...+..+...+.+.|++++|...++++.+... .+...+..+...+...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhH
Confidence 44455555555555544432112222333334444455555555555555554321 134444445555555555543
Q ss_pred --HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 798 --CLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 798 --A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
|+..|++..+. .| +...+..+...+...|++++|...+++..+
T Consensus 267 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 267 LQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555555443 23 344455555555555555555555554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-18 Score=191.58 Aligned_cols=301 Identities=17% Similarity=0.120 Sum_probs=188.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCh
Q 001911 493 LCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPN---VVTYTALIHAYLKARKP 569 (997)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~ 569 (997)
+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 4456777777777777776532 2455667777777777777777777777766432211 23456666777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCC---ceeHHHHH
Q 001911 570 SQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPN---VYTYGALI 646 (997)
Q Consensus 570 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li 646 (997)
++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...... .+. ...+..+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~la 187 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---------------SLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---------------cchHHHHHHHHHHH
Confidence 77777777776542 345566777777777777777777777776553210 000 11234455
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
..+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.++.....++..++.+|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 56666777777777777766543 33455566666677777777777777777766543322345566666777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHH
Q 001911 727 LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK---VGKVDKCLELLR 803 (997)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~l~~ 803 (997)
+|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+++
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 777777776654 244445566666677777777777777766654 4566666666655543 346667777777
Q ss_pred HHHhCCCCCCHH
Q 001911 804 QMSSKGCAPNFV 815 (997)
Q Consensus 804 ~m~~~g~~p~~~ 815 (997)
+|.++++.|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 777665555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-17 Score=194.77 Aligned_cols=333 Identities=10% Similarity=0.005 Sum_probs=270.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 001911 591 FTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGC 670 (997)
Q Consensus 591 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 670 (997)
...++..+.+.|++++|..++....... +.+...+..++.+....|++++|...++++....
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----------------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~- 106 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----------------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN- 106 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----------------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-
Confidence 4456677889999999999999998764 4455566677777888999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001911 671 EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEM 750 (997)
Q Consensus 671 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (997)
+.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++.+..... .+...+..+
T Consensus 107 P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~ 184 (656)
T PRK15174 107 VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC 184 (656)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 566778888999999999999999999999987543 567888899999999999999999998876542 233333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL 829 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 829 (997)
..+...|++++|...++.+.+....++...+..+...+...|++++|+..++++.+. .| +...+..+..++...|+
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Confidence 347889999999999999887644445555566677889999999999999999986 35 57888899999999999
Q ss_pred HHH----HHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 830 LDE----AHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 830 ~~~----A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
+++ |...+++..+.. |+ ...+..++..+...|++++|+..
T Consensus 262 ~~eA~~~A~~~~~~Al~l~-----------------------------------P~~~~a~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFN-----------------------------------SDNVRIVTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred chhhHHHHHHHHHHHHhhC-----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 986 788888876642 43 45777888999999999999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
++++....|. +..++..++.++...|++++|+..|+++.+ ..|+ ...+..++.+|...|++++|+..+++....
T Consensus 307 l~~al~l~P~---~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 307 LQQSLATHPD---LPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9998888765 677788888888899999999999999888 5676 445556788889999999999999887765
Q ss_pred CCc
Q 001911 984 DIN 986 (997)
Q Consensus 984 ~~~ 986 (997)
...
T Consensus 382 ~P~ 384 (656)
T PRK15174 382 RAS 384 (656)
T ss_pred Chh
Confidence 433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=191.01 Aligned_cols=298 Identities=17% Similarity=0.195 Sum_probs=250.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc
Q 001911 525 IDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPN---IVTFTALIDGHCKA 601 (997)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 601 (997)
...+...|++++|+..|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 44567889999999999999987543 667889999999999999999999999987643222 25678889999999
Q ss_pred CCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHH
Q 001911 602 GDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN----NIVY 677 (997)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~ 677 (997)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+...+..+. ...+
T Consensus 121 g~~~~A~~~~~~~l~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-----------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred CCHHHHHHHHHHHHcCC-----------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999998642 55677899999999999999999999999988653332 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 678 DALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV 757 (997)
Q Consensus 678 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 757 (997)
..+...+.+.|++++|...|+++.+..+. +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 66788889999999999999999987533 56678888999999999999999999999764322346788999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHH
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCA---SGLLDEAH 834 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~ 834 (997)
|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++.
T Consensus 263 g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 263 GDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHH
Confidence 9999999999999886 456667788999999999999999999999886 6998899988888775 56899999
Q ss_pred HHHHHHHhcCC
Q 001911 835 NLLEEMKQTYW 845 (997)
Q Consensus 835 ~~~~~m~~~~~ 845 (997)
..+++|.+...
T Consensus 339 ~~~~~~~~~~~ 349 (389)
T PRK11788 339 LLLRDLVGEQL 349 (389)
T ss_pred HHHHHHHHHHH
Confidence 99999987543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-17 Score=192.94 Aligned_cols=426 Identities=12% Similarity=0.033 Sum_probs=254.7
Q ss_pred ccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 446 LNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILI 525 (997)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 525 (997)
.++..+...+......|+.++|++++.+..... +.+...+..+...+.+.|++++|..++++..+..+ .+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344444455555555566666665555554421 22333455555555555556666655555554421 2344445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 526 DNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIE 605 (997)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 605 (997)
..+...|++++|+..++++.+..+. +.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 5555555555555555555554221 333 5555555555555555555555555542 223333344444555555555
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-
Q 001911 606 RACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGF- 684 (997)
Q Consensus 606 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~- 684 (997)
+|...++.+.. .|+ +. ...+ ......++...
T Consensus 168 ~Al~~l~~~~~-------------------~p~---~~-------------~~l~-------------~~~~~~~~r~~~ 199 (765)
T PRK10049 168 PALGAIDDANL-------------------TPA---EK-------------RDLE-------------ADAAAELVRLSF 199 (765)
T ss_pred HHHHHHHhCCC-------------------CHH---HH-------------HHHH-------------HHHHHHHHHhhc
Confidence 55555544321 111 00 0000 00011111111
Q ss_pred ----HhcCCH---HHHHHHHHHHHHc-CCCCCHH-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 001911 685 ----CKVGKL---DEAQMVFSKMLEH-GCNPNVY-TYG----SLIDRLFKDKRLDLALKVISKMLEDSYA-PNVVIYTEM 750 (997)
Q Consensus 685 ----~~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 750 (997)
...+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+++.+.+.+ |+. ....+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHH
Confidence 112223 6677777777754 1222221 111 1123445668888888888888776421 222 12224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-----------CCCC---
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEKGCYP---NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-----------CAPN--- 813 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~--- 813 (997)
...|...|++++|...|+++.+..... .......+..++...|++++|.++++++.... -.|+
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 667888888888888888877643211 13445566667788888888888888887652 1233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|+..++++.... +.+...+..++..+.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~----------------------------------P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNA----------------------------------PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHH
Confidence 2355677888999999999999999987643 223457888999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL 964 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y 964 (997)
..|++++|++.++++....|+ +...+..++..+...|++++|++.++++++ ..|+......|.+.+
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd---~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPR---NINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999999999999999998876 778888889999999999999999999999 679865555555554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-15 Score=177.42 Aligned_cols=442 Identities=14% Similarity=0.098 Sum_probs=260.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 001911 495 DASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANE 574 (997)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 574 (997)
+.|+++.|+..|++..+....-...++ .++..+...|+.++|+.++++..... .........+...+...|++++|++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555555544221001122 44444455555555555555554110 0111111222334444455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCC
Q 001911 575 LFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHK 654 (997)
Q Consensus 575 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 654 (997)
+|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~------------------dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER------------------DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc------------------CcchHHHHHHHHHHHhcch
Confidence 555555443 223344444445555555555555555555432 2332333222222222334
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH------HHHHHHH-----HhcC
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTY------GSLIDRL-----FKDK 723 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------~~li~~~-----~~~g 723 (997)
..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...++.- ...+
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 434555555555543 334444455555555555555555443332111 01000000 0000000 0011
Q ss_pred ---CHHHHHHHHHHHHhC-CCCCC-HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 001911 724 ---RLDLALKVISKMLED-SYAPN-VVI----YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK 794 (997)
Q Consensus 724 ---~~~~A~~~~~~~~~~-~~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 794 (997)
-.+.|+.-++.+... +..|. ... .--.+-++...|++.++++.++.+...|.+.-..+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 245566666666652 11132 122 223455778899999999999999988765445677889999999999
Q ss_pred HHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 795 VDKCLELLRQMSSKG-----CAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 795 ~~~A~~l~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
+++|+.+|+++.... ..++......|..++..++++++|..+++++.+. .|.....+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~-~p~~~~~~----------------- 404 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ-TPYQVGVY----------------- 404 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCcEEecc-----------------
Confidence 999999999997642 1224444678999999999999999999999863 22111000
Q ss_pred HHHhccCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 870 VNEMGKTDSVPIV---PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 870 ~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
......|+. .....++..+...|++.+|++.++++....|+ |......++..+...|.+.+|++.++.+.
T Consensus 405 ----~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~---n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 405 ----GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA---NQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred ----CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 000112332 24556778889999999999999999988887 99999999999999999999999997777
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 947 RKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 947 ~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
. +.|+ ..+...++.++...|+|++|..+.+++.+.-.+
T Consensus 478 ~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 478 S--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred h--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 7 6786 778889999999999999999999877664433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-14 Score=155.09 Aligned_cols=637 Identities=13% Similarity=0.046 Sum_probs=297.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCCh
Q 001911 241 LIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK--EEFVPDTVLYTKMISGLCEASLF 318 (997)
Q Consensus 241 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~p~~~~~~~li~~~~~~g~~ 318 (997)
..+.+.-.|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-. .-.+.|...|..+..-..+.|++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 3333444488888888888888765 44555677777777777777777665432 22233556777777777777778
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHcCCHHHHHHH
Q 001911 319 EEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHS----LIHAYCRSGDYSYAYKL 394 (997)
Q Consensus 319 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~ 394 (997)
++|.-+|.+..+.. +++..-+--=...|-+.|+...|.+-+.++.....+.+..-+.. +++.|...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 87777777777663 33333333333444455555555555555555432112111111 12222223333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHH
Q 001911 395 LSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREM 474 (997)
Q Consensus 395 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m 474 (997)
++.... ..+-..+..+++.+...+.+...++.|...+..+
T Consensus 303 le~~~s----------------------------------------~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 303 LEGALS----------------------------------------KEKDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred HHHHHh----------------------------------------hccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 322221 1112223344555566667777777777777766
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC
Q 001911 475 MSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMK--RNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEG--CD 550 (997)
Q Consensus 475 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~ 550 (997)
......+|..-+.+-= .++ .-+.-.. ..+..++..+ -.+.-++......+....+..-+.+.. +.
T Consensus 343 ~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 343 RNRESEKDDSEWDTDE-----RRR-----EEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred hccccCCChhhhhhhh-----hcc-----ccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 6533333332221000 000 0000000 0011122222 011111222222222222222222222 22
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHh
Q 001911 551 PNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVL 630 (997)
Q Consensus 551 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 630 (997)
-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|-..|.++.|.+.|+.+....
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------------ 479 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------------ 479 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------------
Confidence 23344555555555555555555555555554433444455555555555555555555555555432
Q ss_pred ccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 631 DNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSV--------VGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLE 702 (997)
Q Consensus 631 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 702 (997)
+.+...-..|...+-+.|+.++|.+.+..+.. .+..|+........+.+.+.|+.++-+.+...|+.
T Consensus 480 -----p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 480 -----PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred -----CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23333344444455555555555555555331 11223333333444455555555554444444433
Q ss_pred cCC----------------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHH------HHhCCCCCCH--HHHHHHHH
Q 001911 703 HGC----------------------NPNVYTYGSLIDRLFKDKRLDLALKVISK------MLEDSYAPNV--VIYTEMID 752 (997)
Q Consensus 703 ~g~----------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~------~~~~~~~~~~--~~~~~li~ 752 (997)
... .-.......++.+-.+.++.....+-... -...+..-+. ..+..++.
T Consensus 555 ~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~ 634 (895)
T KOG2076|consen 555 DFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELIL 634 (895)
T ss_pred HHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHH
Confidence 210 00111111222222222221111110000 0001111111 12334445
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhC-CC--CC-CHHHHHHHHHH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGC--YPNV---VTYTAMIDGFGKVGKVDKCLELLRQMSSK-GC--AP-NFVTYRVLINH 823 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~p-~~~~~~~l~~~ 823 (997)
.+++.+++++|..+...+.+... .++. ..-...+.+.+..+++..|...++.|..+ +. .| -...|+...+.
T Consensus 635 ~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~ 714 (895)
T KOG2076|consen 635 SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSY 714 (895)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 55556666666665555554311 1111 11122334445555666666665555543 11 11 11222222222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALE 903 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 903 (997)
..+.|+-.--..++.. +.......+.+....-+......+.+.-|+.
T Consensus 715 ~~~~~q~v~~~R~~~~---------------------------------~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~ 761 (895)
T KOG2076|consen 715 FSKYGQRVCYLRLIMR---------------------------------LLVKNKDDTPPLALIYGHNLFVNASFKHALQ 761 (895)
T ss_pred HHHHHHHHHHHHHHHH---------------------------------HhccCccCCcceeeeechhHhhccchHHHHH
Confidence 2222222111111111 1111111112333345566778899999999
Q ss_pred HHHHHhcCCCCCCcchhhHHHHHHHHHhc-------C---CHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHH
Q 001911 904 LHEEMTSFSSNSAASRNSTLLLIESLSLA-------R---KIDKAFELYVDMIRKDGSP-E-LSTFVHLIKGLIRVNKWE 971 (997)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g---~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~y~~~g~~~ 971 (997)
.|-++....|+ ++.+-..++.++.+. . ..-+++..+++-.+.- .+ + .++++.+|++|...|-.-
T Consensus 762 ~y~ra~~~~pd---~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR-~~~~~QEa~YNigRayh~~gl~~ 837 (895)
T KOG2076|consen 762 EYMRAFRQNPD---SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELR-RCEEKQEAFYNIGRAYHQIGLVH 837 (895)
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHcccHH
Confidence 99998887665 444444555444332 1 2566777776665532 22 3 679999999999999999
Q ss_pred HHHHHHHHhhccC
Q 001911 972 EALQLSYSICHTD 984 (997)
Q Consensus 972 eA~~~~~~~~~~~ 984 (997)
-|..+|+++++..
T Consensus 838 LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 838 LAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999874
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-15 Score=172.86 Aligned_cols=451 Identities=13% Similarity=0.054 Sum_probs=333.5
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTS-TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQ 536 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 536 (997)
..+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|+..+++..... .........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 45889999999999999886 45542 22277778888899999999999988321 2234444455678889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
|+.+|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999998655 5677778888999999999999999999876 56666665555555556777679999999988
Q ss_pred ccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH------HHHHHH-H----H
Q 001911 617 NAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVY------DALIDG-F----C 685 (997)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~li~~-~----~ 685 (997)
.. +.+...+..+...+.+.|-...|.++..+-...- .+....+ ..+++. . .
T Consensus 198 ~~-----------------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 198 LA-----------------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred hC-----------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhccccccc
Confidence 63 5567778888899999999999988776532110 1111100 111110 0 0
Q ss_pred hcCC---HHHHHHHHHHHHHc-CCCCCH-HhH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 686 KVGK---LDEAQMVFSKMLEH-GCNPNV-YTY----GSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 686 ~~g~---~~~A~~~~~~m~~~-g~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
...+ .+.|+.-++.+... +..|.. ..| .-.+-++...+++.++++.|+.+...+.+....+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1122 34455555665542 222322 122 23345677899999999999999988766566688889999999
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-------------CCCC-HHHH
Q 001911 757 VGKTEEAYKVMLMMEEKG-----CYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-------------CAPN-FVTY 817 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~-~~~~ 817 (997)
.+++++|..++..+.... ..++......|.-+|...+++++|..+++++.+.- ..|| ...+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999987642 12344446788999999999999999999998731 1223 3345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 001911 818 RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGR 897 (997)
Q Consensus 818 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 897 (997)
..++..+...|++.+|++.++++.... +-+......+++++...|+
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a----------------------------------P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA----------------------------------PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHhcCC
Confidence 566778889999999999999997653 2345577889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001911 898 LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWE 971 (997)
Q Consensus 898 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~ 971 (997)
..+|.+.++.+....|. +..+....+.++...+++++|..+.+++.+ ..||......|.+.+.....++
T Consensus 466 p~~A~~~~k~a~~l~P~---~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r~~~~h~~~~ 534 (822)
T PRK14574 466 PRKAEQELKAVESLAPR---SLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDRQRKVHNMYE 534 (822)
T ss_pred HHHHHHHHHHHhhhCCc---cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHHHHHHhhhHH
Confidence 99999999998888775 788888899999999999999999999999 7798555556655544333344
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-12 Score=138.95 Aligned_cols=642 Identities=13% Similarity=0.068 Sum_probs=411.7
Q ss_pred ChHHHHHHHHHHHhCCCCCC--------HHhHHHHHHHH-----HhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHH
Q 001911 215 FWNVALEELGRLKDFGYKPT--------QAIYNALIQVF-----LRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLC 281 (997)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~--------~~~~~~ll~~~-----~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 281 (997)
+..+|...+-.|....+..+ ...|.+=+... ...++...|..++..+.+.+ +.++..|.+-...--
T Consensus 218 kig~ar~~l~~~kl~qvsdsvtgqtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretn-P~hp~gWIAsArLEE 296 (913)
T KOG0495|consen 218 KIGQARNTLMDMKLNQVSDSVTGQTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETN-PKHPPGWIASARLEE 296 (913)
T ss_pred hhhHHHHHHHhhhhhhccccCCCCcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHH
Confidence 55677777766665433222 12233222221 12345678888888888776 345555666666666
Q ss_pred hcCCHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHH
Q 001911 282 KAGRWKEALELIEK--EEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRV 359 (997)
Q Consensus 282 ~~g~~~~A~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (997)
..|++..|..++.+ ..+..+...|---| +....+.|..+....... .|+++.+- +.+---..+...=.++
T Consensus 297 vagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~Avr~--~P~Sv~lW--~kA~dLE~~~~~K~RV 368 (913)
T KOG0495|consen 297 VAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVANAVRF--LPTSVRLW--LKAADLESDTKNKKRV 368 (913)
T ss_pred HhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHHHHHh--CCCChhhh--hhHHhhhhHHHHHHHH
Confidence 77888888777665 23333444554433 233455555555555544 34433221 1111111122222344
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHH
Q 001911 360 LSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEM 439 (997)
Q Consensus 360 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m 439 (997)
+....+. ++.++..|-.. ....+.+.|+-++.+..++ -|..
T Consensus 369 lRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec--cp~s-------------------------------- 409 (913)
T KOG0495|consen 369 LRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC--CPQS-------------------------------- 409 (913)
T ss_pred HHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh--ccch--------------------------------
Confidence 4444443 23334444332 2334444566666666553 1211
Q ss_pred HHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH----HHHCCCC
Q 001911 440 LNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQE----MKRNGLI 515 (997)
Q Consensus 440 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~g~~ 515 (997)
..+..+|.+..-++.|..++++..+. ++.+...|.+....--.+|+.+...++..+ +...|+.
T Consensus 410 ------------~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~ 476 (913)
T KOG0495|consen 410 ------------MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE 476 (913)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee
Confidence 11333445666778888888888775 566777777766666677888888877765 3456777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 516 PDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDP--NVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTA 593 (997)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 593 (997)
.+...|-.=...+-..|..--+..+....+.-|+.- -..||+.-...|.+.+.++-|..+|...++-- +.+...|..
T Consensus 477 i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlr 555 (913)
T KOG0495|consen 477 INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLR 555 (913)
T ss_pred ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 888888888888888888888888888888777642 34678888888889999999999998887652 445566766
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 001911 594 LIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN 673 (997)
Q Consensus 594 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 673 (997)
.+..--..|..+.-..+|+++.... +.....|-.....+-..|+...|..++....+.. +.+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-----------------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pns 617 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-----------------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNS 617 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-----------------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCc
Confidence 6666666788888888898887752 4455667777777888899999999999988776 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDG 753 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 753 (997)
...|-.-+..-..+.+++.|..+|.+.... .|+...|.--+...--.++.++|++++++.++. ++.-...|-.+...
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHH
Confidence 778888888888899999999999988875 456667766666666778899999999988875 33335677788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 001911 754 LIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDE 832 (997)
Q Consensus 754 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 832 (997)
+-+.++++.|.+.+..-... ++-.+..|..|.+.--+.|.+-+|..++++..-+ .| |...|...|..-.+.|+.+.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHH
Confidence 88889999998888776554 3445566777777777888999999999998877 45 68889999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHhHhH--hHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 833 AHNLLEEMKQTYWPTHVAGYRKVIEGFSR--EFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 833 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
|..++.+..+.. |.....+...|.-+.+ .-.. .+..+... +.+.-.+..++..+....++++|.+.|.++.+
T Consensus 772 a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTk---s~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 772 AELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTK---SIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHhC-CccchhHHHHHHhccCcccchH---HHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998888764 3332222222222111 1001 11111111 12222334455555555666666666666666
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 911 FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+|. +..+|..+-.-+...|.-++-.+++.+... ..|.
T Consensus 846 ~d~d---~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~ 883 (913)
T KOG0495|consen 846 KDPD---NGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPT 883 (913)
T ss_pred cCCc---cchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCC
Confidence 5553 555555555555556655555555555555 4453
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-13 Score=139.29 Aligned_cols=436 Identities=16% Similarity=0.213 Sum_probs=288.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cCChh-HHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHH
Q 001911 213 NGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLR--ADRLD-TAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEA 289 (997)
Q Consensus 213 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 289 (997)
.|....+.-++++|.+.|++.+...-..|++.-+- ..++- .-++.|-.|.+.|-.. ..+| |.|.+.+
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--------KSGAVAD- 197 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc--------ccccHHH-
Confidence 48888888899999999888887776666664333 22332 2245566666555222 2222 3455444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 001911 290 LELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCY 369 (997)
Q Consensus 290 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 369 (997)
-+|+.. +....++.+||.|+|+-...+.|.+++++.....++.+..+||.+|.+-. +...++++.+|......
T Consensus 198 -L~~E~~--PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 -LLFETL--PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMT 270 (625)
T ss_pred -HHHhhc--CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcC
Confidence 344443 23567899999999999999999999999998888999999999997654 23348899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCcc
Q 001911 370 PSPRIFHSLIHAYCRSGDYSYA----YKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVV 445 (997)
Q Consensus 370 ~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 445 (997)
||..|+|+++.+..+.|+++.| .+++.+|++-|+.|...+|..+|..+|+.++-
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp---------------------- 328 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP---------------------- 328 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc----------------------
Confidence 9999999999999999988754 56778899999999999999999888765441
Q ss_pred ccccchhHHHHHHHccCCHHHHHHHHHHHH----HCCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 001911 446 LNKINVSNFVQCLCGAGKYEKAYNVIREMM----SKGFIP----DTSTYSKVIGYLCDASEAEKAFLLFQEMKRNG---- 513 (997)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~----~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---- 513 (997)
...|..++.++. ...++| |...+...+..|.+..+.+.|.++...+....
T Consensus 329 ------------------~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 329 ------------------QKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred ------------------hhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 112223333322 222222 34456777788888888888888776665321
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 001911 514 LIPD---VYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVT 590 (997)
Q Consensus 514 ~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 590 (997)
+.|+ ..-|..+....|.....+.-..+++.|.-+-.-|+..+...++++..-.|.++-.-+++..++..|..-....
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 2222 3456677888889999999999999998877778888888899988888999888888888887663222221
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc-CCh-HHHHHHHHHHHhc
Q 001911 591 FTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV-HKV-REAHDLLDAMSVV 668 (997)
Q Consensus 591 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~-~~A~~~~~~m~~~ 668 (997)
-++++..+.... ..|+...-..+-...+++ -++ +.....-.+|.+.
T Consensus 471 ----------------~eeil~~L~~~k----------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 471 ----------------REEILMLLARDK----------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred ----------------HHHHHHHHhcCC----------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 122223332211 122222111222222211 011 1122223344444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001911 669 GCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN----PNVYTYGSLIDRLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 669 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
.. .....+.+.-.+.+.|..++|.+++..+.+.+-+ |.......+++.-.+.+....|..+++-|...+
T Consensus 519 ~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 519 DW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 33 3445566666778888888888888888665422 333333355555566677777777777776543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-13 Score=150.33 Aligned_cols=751 Identities=12% Similarity=0.061 Sum_probs=388.7
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhH
Q 001911 159 IGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIY 238 (997)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 238 (997)
.|..|+..+|..+|.-||..|+...|- +|.-|...+.++....|+.++.+..++++.+.+. .|...||
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 588999999999999999999999988 8888888777788889999999999999888775 6888999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH-------HCCCCCCchh--------------HHHHHHHHHhcCCHHHHHHHHHhCC
Q 001911 239 NALIQVFLRADRLDTAYLVYREML-------DAGFSMDGFT--------------LGCFAYSLCKAGRWKEALELIEKEE 297 (997)
Q Consensus 239 ~~ll~~~~~~g~~~~a~~~~~~m~-------~~g~~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~~~ 297 (997)
..|+.+|...|++..-..+=+.|. ..|+.....- ....+..+.-.|-++.+++++...+
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999876222222122 1222111111 1122333344555666666665533
Q ss_pred CCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 001911 298 FVPDTVLYTKMISGLCEAS-LFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFH 376 (997)
Q Consensus 298 ~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 376 (997)
........-..++-..... .+++-..+-....+ .|+..+|..++++-.-.|+.+.|..++..|.+.|++.+...|.
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 2111111111233333222 22333333222222 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchH---HHHH--HHHHHHHHH----------
Q 001911 377 SLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDV---FELA--EKAYAEMLN---------- 441 (997)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~---~~~a--~~~~~~m~~---------- 441 (997)
.|+-+ .++...+..++..|.+.|+.|+..|+..-+-....+++....+. .+.+ ..++.+|..
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 98877 88999999999999999999999999876554444332110000 0000 001111111
Q ss_pred ---------------cCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCC--CCC-CHhhHHHHHHHHHhcCCHHHHH
Q 001911 442 ---------------AGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKG--FIP-DTSTYSKVIGYLCDASEAEKAF 503 (997)
Q Consensus 442 ---------------~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g--~~p-~~~~~~~li~~~~~~g~~~~A~ 503 (997)
.|.......+ .+..-+..+|+-++..++...+..-- ..+ ++..|..++.-|.+.-+.....
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 1111111111 11111222444444444444443211 111 1122333332222211100000
Q ss_pred HHHH--HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CC-------CCHHHHHHHHHHHHhcCChh
Q 001911 504 LLFQ--EMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEG----CD-------PNVVTYTALIHAYLKARKPS 570 (997)
Q Consensus 504 ~~~~--~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-------~~~~~~~~ll~~~~~~g~~~ 570 (997)
.++. +..... .+...---++....+. +...+.+-+..+.... .. +-...-+.++..++..-+..
T Consensus 400 ~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 400 RIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000 0000000011111110 1111222221111110 00 01112344555566555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHH
Q 001911 571 QANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLC 650 (997)
Q Consensus 571 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 650 (997)
+++..-++....- .+ ..|..||+.++..+..+.|..+..+...... ...-+..-+..+.+.+.
T Consensus 477 K~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~--------------s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 477 KILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDE--------------SIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccch--------------hhhcccHhHHHHHHHHH
Confidence 5554444443321 11 5688899999999999999998888764431 13455566888889999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 001911 651 KVHKVREAHDLLDAMSVVGCEPN--NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLA 728 (997)
Q Consensus 651 ~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 728 (997)
+.+....+..++.++.+.-...+ ..+.-.+++.-...|+.+...++++-+...|+.-+ .-++....+.++...|
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhh
Confidence 99999999999998876322222 34455667777788999999999888888776531 2233344455555556
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 729 LKVISKMLEDSYAPNVVIYTEMIDG---------------------LIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMID 787 (997)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~li~~---------------------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 787 (997)
.+.++...+. .+|.+.....+... |.+.|+..+|.++.+. .|+ .+-+.- +
T Consensus 616 ~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et---pG~----r~r~~R-D 686 (1088)
T KOG4318|consen 616 QEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET---PGV----RCRNGR-D 686 (1088)
T ss_pred hhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc---Ccc----cccCCC-c
Confidence 5555544332 23333332222222 3344444443333221 000 000000 1
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhH--hHHH
Q 001911 788 GFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSR--EFIV 865 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~--~~~~ 865 (997)
.|...|...--..+.+.+.+.| ....|+..|.+.|+++.|..++.++.-...+........|++.-.+ +.-+
T Consensus 687 r~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe 760 (1088)
T KOG4318|consen 687 RDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPE 760 (1088)
T ss_pred cccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchh
Confidence 1111122222222222222221 1122555566666666666666655421111111112222211111 1111
Q ss_pred HHHHHHHhccC-CCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 866 SLGLVNEMGKT-DSVPIVP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 866 a~~~~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
+....+..... ...|... .|.--+....+-...+.|.+.+.+..+..+ +.+...+..+.+++.... ...|.. ..
T Consensus 761 ~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~--v~tad~ls~f~k~L~~nd-~~aa~s-ha 836 (1088)
T KOG4318|consen 761 IQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT--VSTADELSDFLKCLVKND-QLAAQS-HA 836 (1088)
T ss_pred HHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHhcC-HHHHHh-cc
Confidence 22222222111 1123222 222223333444455588899999887642 346677777777776665 222222 22
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001911 944 DMIRKDGSPELSTFVHLIKGLIRVNKWEEALQ 975 (997)
Q Consensus 944 ~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~ 975 (997)
. |..-.......++..+.+.-.|.||..
T Consensus 837 ~----Ges~~~l~tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 837 S----GESSKELLTSRLINILLRRLGLAEALS 864 (1088)
T ss_pred c----ccchhhhhhHHHHHHHHHHhhHHHHHH
Confidence 1 433333344456666666666788876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-11 Score=126.94 Aligned_cols=411 Identities=13% Similarity=0.088 Sum_probs=325.3
Q ss_pred HHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001911 438 EMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPD--TSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLI 515 (997)
Q Consensus 438 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 515 (997)
++..+|+..+...+..-...+-..|.+-....+....+..|+... ..||..-...|.+.+-++-|+.+|...++-. +
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p 547 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-P 547 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-c
Confidence 344556666666666666666677888888888888887775432 3578888888999999999999999888763 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 516 PDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALI 595 (997)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 595 (997)
-+...|...+..--..|..++-..+|++....-+ -....|.....-+-..|+...|..++.+..+.. +.+...|..-+
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaav 625 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAV 625 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3677888888887888999999999999988733 356677777777888899999999999998875 44677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-H
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN-N 674 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~ 674 (997)
........++.|..+|.+.... .|+..+|..-+...--.++.++|.+++++.++. -|+ .
T Consensus 626 Kle~en~e~eraR~llakar~~------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~ 685 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH 685 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH
Confidence 8999999999999999998764 677777877777777789999999999888865 344 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 754 (997)
..|..+.+.+-+.++.+.|.+.|..-.+.- +.....|..+...--+.|.+-.|..++++..-.+ +.+...|-..|.+-
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRME 763 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHH
Confidence 567788888888899999988887766552 2245567777777788899999999999987665 56788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAH 834 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 834 (997)
.+.|+.+.|..++.++.+. ++-+...|..-|....+.++-...++.+++. .-|..+...+...+....++++|.
T Consensus 764 lR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998886 5557778888887777777766665555544 456777888888999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 835 NLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 835 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
++|.+..... |+ -++|-.+...+.++|.-++-.+++.+.....|
T Consensus 838 ~Wf~Ravk~d-----------------------------------~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 838 EWFERAVKKD-----------------------------------PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHccC-----------------------------------CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 9999887653 44 34788888889999999999999999988776
Q ss_pred C
Q 001911 914 N 914 (997)
Q Consensus 914 ~ 914 (997)
.
T Consensus 883 ~ 883 (913)
T KOG0495|consen 883 T 883 (913)
T ss_pred C
Confidence 4
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-13 Score=148.10 Aligned_cols=251 Identities=16% Similarity=0.147 Sum_probs=151.8
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001911 186 QFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAG 265 (997)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 265 (997)
.++..+...|..+...+|..+|.-||..|+.+.|- +|.-|+-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56777777777777778888888888888888887 7777776667777788888888888888877665
Q ss_pred CCCCchhHHHHHHHHHhcCCHH---HHHHHHHh-------CCC-CCCHHHH-------------HHHHHHHHccCChHHH
Q 001911 266 FSMDGFTLGCFAYSLCKAGRWK---EALELIEK-------EEF-VPDTVLY-------------TKMISGLCEASLFEEA 321 (997)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~-------~~~-~p~~~~~-------------~~li~~~~~~g~~~~A 321 (997)
.|-..||..+..+|...|++. ...+.++. .|+ .|....| ..+|.-..-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 667778888888888888644 33332221 111 1111111 1223333444555566
Q ss_pred HHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 322 MDLLNRMRARS-CIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRK 400 (997)
Q Consensus 322 ~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (997)
++++..|.... ..|-.+ ++.-+.. .....+.++......--.|++.+|..+++.-...|+++.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 66555543221 111111 2322222 2233444444444332257777888888877788888888888888888
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCC
Q 001911 401 CGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGK 463 (997)
Q Consensus 401 ~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 463 (997)
.|...+...|-.||-| .+ ...-++.+..-|.+.|+.|+..|+...+..+..+|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~------~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---IN------AAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---Cc------cchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8877777766666644 11 134445555555566666666666555555554433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-14 Score=145.44 Aligned_cols=482 Identities=17% Similarity=0.148 Sum_probs=295.0
Q ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 001911 451 VSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTY-SKVIGYLCDASEAEKAFLLFQEMKRNGLIPD----VYTYTILI 525 (997)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li 525 (997)
+.++.+.|..+....+|+..++-+++...-|+.... ..+.+.+.+..++.+|++.++.....-+..+ ..+.+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 334555566677778888888888777666665543 2334556677778888888877766522222 23444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------------HHHHH
Q 001911 526 DNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNI------------VTFTA 593 (997)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~------------~~~~~ 593 (997)
..+.+.|+++.|+..|+...+. .|+..+--.|+.++...|+-++..+.|.+|+.....||. ...+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5677888999999888887775 467666555666666788888888888888765433332 22222
Q ss_pred HHH-----HHHHcC--CHHHHHHHHHHHHhccCCCc----hhHHHHHhccCC-CCCCceeHHHHHHHHHhcCChHHHHHH
Q 001911 594 LID-----GHCKAG--DIERACRIYARMKGNAEISD----VDIYFRVLDNNC-KEPNVYTYGALIDGLCKVHKVREAHDL 661 (997)
Q Consensus 594 li~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 661 (997)
-|. -.-+.+ +-++++-.-.++..-...++ -+.....+.... .+.-...--.-...|.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 111111 11222222112211100000 000000000000 000000001112357889999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001911 662 LDAMSVVGCEPNNIVYDALIDGFCK--VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 662 ~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
+.-+....-..-...-+.|-..+.. -.++..|..+-+..+...- -+......-...-...|++++|.+.|++.+...
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 9888765433333333333333322 3367788887777665421 122222222333456789999999999998764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 001911 740 YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYR 818 (997)
Q Consensus 740 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~ 818 (997)
-.-....|| +.-.+-..|++++|++.|-++..- +..+......+...|....+..+|++++-+.... .| |+....
T Consensus 521 asc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ils 596 (840)
T KOG2003|consen 521 ASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILS 596 (840)
T ss_pred hHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHH
Confidence 322233333 334567789999999999887643 2236677778888899999999999998777654 45 789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
.|.+.|-+.|+...|.+..-.-.. ++ +-+..+..+|+..|....-+
T Consensus 597 kl~dlydqegdksqafq~~ydsyr-yf---------------------------------p~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYR-YF---------------------------------PCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhccc-cc---------------------------------CcchHHHHHHHHHHHhhHHH
Confidence 999999999999999887654332 22 23455677788888888888
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESL-SLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~ 977 (997)
++|+..|+++.-..| +...|-.++..| .+.|+|.+|..+|+..-++ +..|...+..|.++....|. .+|.++.
T Consensus 643 ekai~y~ekaaliqp----~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~ 716 (840)
T KOG2003|consen 643 EKAINYFEKAALIQP----NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYA 716 (840)
T ss_pred HHHHHHHHHHHhcCc----cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHH
Confidence 888888888765543 667777666555 5568888888888887663 33357777788888777774 4444444
Q ss_pred HH
Q 001911 978 YS 979 (997)
Q Consensus 978 ~~ 979 (997)
++
T Consensus 717 ~k 718 (840)
T KOG2003|consen 717 DK 718 (840)
T ss_pred HH
Confidence 33
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-12 Score=130.64 Aligned_cols=362 Identities=15% Similarity=0.211 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccc
Q 001911 369 YPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNK 448 (997)
Q Consensus 369 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 448 (997)
+-...++..||.+.||.-..+.|.++|++-.....+.+..++|.+|.+-.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S------------------------------ 253 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS------------------------------ 253 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH------------------------------
Confidence 33456677777777777777777777777766656666677777765431
Q ss_pred cchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHH
Q 001911 449 INVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKA----FLLFQEMKRNGLIPDVYTYTIL 524 (997)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~l 524 (997)
+....+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+
T Consensus 254 ---------------~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~i 318 (625)
T KOG4422|consen 254 ---------------YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLI 318 (625)
T ss_pred ---------------hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHH
Confidence 122255666666666677777777777777666665443 4555666677777777777777
Q ss_pred HHHHHHcCCHHH-HHHHHHHHHHc----CCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCC---H
Q 001911 525 IDNFCKAGLIEQ-ARNWFDEMVKE----GCD----PNVVTYTALIHAYLKARKPSQANELFETMLSKG----CIPN---I 588 (997)
Q Consensus 525 i~~~~~~g~~~~-A~~~~~~m~~~----g~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~ 588 (997)
|..+++-++..+ |..++.++... .++ -|...|...+..|.+..+.+-|.++..-+.... +.|+ .
T Consensus 319 ik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~ 398 (625)
T KOG4422|consen 319 IKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRN 398 (625)
T ss_pred HHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHH
Confidence 776666665433 44444444332 111 133445555666666677776666665554321 2222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001911 589 VTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVV 668 (997)
Q Consensus 589 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 668 (997)
.-|..+....|+....+.-...|+.|.... .-|+..+...++.+.--.++++-.-+++..+...
T Consensus 399 fYyr~~~~licq~es~~~~~~~Y~~lVP~~----------------y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 399 FYYRKFFDLICQMESIDVTLKWYEDLVPSA----------------YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccce----------------ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 235566677777777777777887776443 3566666666777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCH-HHHHHHHHHHHhCCCCCCHHH
Q 001911 669 GCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKD-KRL-DLALKVISKMLEDSYAPNVVI 746 (997)
Q Consensus 669 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~-~~A~~~~~~~~~~~~~~~~~~ 746 (997)
|..-+...- ++++..|.+..+.|+...-..+-....++ -++ +.....-.++.+..+ ....
T Consensus 463 ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~ 524 (625)
T KOG4422|consen 463 GHTFRSDLR----------------EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATS 524 (625)
T ss_pred hhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhH
Confidence 532222221 23333333333333322111111111111 011 111112233333332 3445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGC----YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
.+.+.-.+.+.|+.++|.++|.-+...+- .|......-+++.-.+.++..+|+..++-|...+
T Consensus 525 l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 525 LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 55566666677777777777776654321 2333333344555556667777777777776543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-12 Score=132.17 Aligned_cols=287 Identities=15% Similarity=0.137 Sum_probs=213.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001911 526 DNFCKAGLIEQARNWFDEMVKEGCDPNVVTYT-ALIHAYLK-ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGD 603 (997)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 603 (997)
..|.+.|+++.|+++++-+.+..-+.-...-| .-+.-|.+ -.++.+|.+.-+..+... .-+......-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 45779999999999999888764332222222 22223333 346677777777666443 3344444444445567899
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHH---HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001911 604 IERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALI---DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDAL 680 (997)
Q Consensus 604 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 680 (997)
+++|.+.|++..... ...-.+|. -.+-+.|++++|++.|-++...- ..+..++..+
T Consensus 506 ~dka~~~ykeal~nd--------------------asc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qi 564 (840)
T KOG2003|consen 506 LDKAAEFYKEALNND--------------------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQI 564 (840)
T ss_pred HHHHHHHHHHHHcCc--------------------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 999999999987543 22222222 24667899999999998775432 4567788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 681 IDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT 760 (997)
Q Consensus 681 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 760 (997)
...|....+...|++++.+.... ++.|+....-|.+.|-+.|+-..|.+.+-+-.+- ++-+..+...|...|....-+
T Consensus 565 aniye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHH
Confidence 99999999999999999888776 4458889999999999999999999887665543 567888989999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 761 EEAYKVMLMMEEKGCYPNVVTYTAMIDGF-GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 761 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
++|+.+|++..- +.|+..-|-.+|..| .+.|++++|.++|+....+ ++.|......|++.+...|. .+|.++-++
T Consensus 643 ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 643 EKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 999999998765 689999999888665 5789999999999999887 45588899999999888775 344444444
Q ss_pred H
Q 001911 840 M 840 (997)
Q Consensus 840 m 840 (997)
+
T Consensus 719 l 719 (840)
T KOG2003|consen 719 L 719 (840)
T ss_pred H
Confidence 3
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-09 Score=120.10 Aligned_cols=349 Identities=13% Similarity=0.123 Sum_probs=186.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcC
Q 001911 135 VVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNG 214 (997)
Q Consensus 135 ~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 214 (997)
|.-+.....+|++|++. .++.+...--..|-.-...|...|++.+|-.+-..-+..- --+..+.+..=..=...|
T Consensus 334 Vpyi~~~LqnpeLal~~----A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgI-LRt~~Ti~kFq~V~a~~G 408 (1666)
T KOG0985|consen 334 VPYITNVLQNPELALRL----AVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGI-LRTPGTINKFQSVPAQPG 408 (1666)
T ss_pred ehhhhccccChHHHHHh----hhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhh-hcCHHHHHHHHcCCCCCC
Confidence 44555667788888763 2333333333344445556666788877766554433210 001123333333334456
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH-----HCC--CCC-C----c------hhHHHH
Q 001911 215 FWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREML-----DAG--FSM-D----G------FTLGCF 276 (997)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g--~~~-~----~------~~~~~l 276 (997)
...--+..|..+...| +.|..----+.+.-...|+.+....++.+=. +.| +.| | . -+-+-.
T Consensus 409 q~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KV 487 (1666)
T KOG0985|consen 409 QPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKV 487 (1666)
T ss_pred CCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHH
Confidence 6666777777777766 4444333334444444555555544443221 112 111 1 1 122455
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHH
Q 001911 277 AYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRC 356 (997)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 356 (997)
+.+|+.+|.++++.-...+.|..||... +|+.+.+ -.++.+.++...|.... |...-++.+.+.+...+....+
T Consensus 488 i~cfAE~Gqf~KiilY~kKvGyTPdymf---lLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~ 561 (1666)
T KOG0985|consen 488 IQCFAETGQFKKIILYAKKVGYTPDYMF---LLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQC 561 (1666)
T ss_pred HHHHHHhcchhHHHHHHHHcCCCccHHH---HHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhh
Confidence 7788889999999999999898998654 5555555 67889998888887643 2222333333333333333333
Q ss_pred HHHHHHHHHCCC-----------------CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 001911 357 KRVLSMMITEGC-----------------YPS------------PRIFHSLIHAYCRSGDYSYAYKLLSKMRKC------ 401 (997)
Q Consensus 357 ~~~~~~m~~~g~-----------------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 401 (997)
...+-...+... .|+ ..-+..+.+.|-+.|-+.+|++.|.++..-
T Consensus 562 TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVh 641 (1666)
T KOG0985|consen 562 TSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVH 641 (1666)
T ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHH
Confidence 332222222110 111 112455677888999999999888776431
Q ss_pred --CCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHC--
Q 001911 402 --GFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSK-- 477 (997)
Q Consensus 402 --g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~-- 477 (997)
-+.|+-. . ++.+. -.++.+.+.+..|+..++..+-..+-.+..-|+..=-.+.-+++|+....-
T Consensus 642 th~L~pEwL-----v-~yFg~------lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 642 THLLNPEWL-----V-NYFGS------LSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred hccCCHHHH-----H-HHHHh------cCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 1122111 1 11111 125667777777777777666665555555555554455555555544321
Q ss_pred ---------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 478 ---------GFIPDTSTYSKVIGYLCDASEAEKAFLLFQ 507 (997)
Q Consensus 478 ---------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 507 (997)
++..|....-..|.+.|+.|++.+...+.+
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 123344444555666677777666665543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-13 Score=149.06 Aligned_cols=294 Identities=12% Similarity=0.025 Sum_probs=223.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 001911 650 CKVHKVREAHDLLDAMSVVGCEPN-NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLA 728 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 728 (997)
...|+++.|.+.+.+..+.. |+ ...+-....+....|+++.|.+.+.++.+..+.+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 45799999999998887654 44 3444455677888999999999999998765443333444457888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHH
Q 001911 729 LKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA----MIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A~~l~~~ 804 (997)
...++.+.+.. +.+...+..+...+.+.|++++|.+++..+.+.+.. +...+.. ...+....+..+++.+.+.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 456778889999999999999999999999988654 3333321 11122333444445556666
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC
Q 001911 805 MSSKGC---APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI 881 (997)
Q Consensus 805 m~~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 881 (997)
+.+... +.+...+..++..+...|+.++|.+.+++..+..+ +
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-----------------------------------d 295 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-----------------------------------D 295 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-----------------------------------C
Confidence 666421 12788899999999999999999999999987652 2
Q ss_pred hhh---HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 001911 882 VPA---YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR--NSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELST 956 (997)
Q Consensus 882 ~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 956 (997)
... ...........++.+.+++.+++..+..|+ ++ .....+++.+.+.|++++|.+.++++......|+...
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~---~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD---KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 221 111222233457888999999999988776 66 7888999999999999999999995333336899888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.+|+..+.+.|+.++|.+++++.++.-.
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999998655433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-17 Score=156.03 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=63.2
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccC-----CCCCCCCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLM-----NPSAADSVPNF 92 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 92 (997)
-||+||+|||+|||++|||+++|+|+|+|++++.++|-|+|++ .|+||+||||++ +.|||+.|++|
T Consensus 74 LFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e---------~ERyE~lrHCryVDEVi~~APW~lt~EF 144 (348)
T KOG2804|consen 74 LFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNE---------NERYEALRHCRYVDEVIPNAPWTLTPEF 144 (348)
T ss_pred HhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecCh---------HHHHHHhhhhhhhhhhccCCCccccHHH
Confidence 4999999999999999999999999999999999999999999 999999999994 67999999988
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-12 Score=141.53 Aligned_cols=285 Identities=12% Similarity=0.048 Sum_probs=221.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 001911 652 VHKVREAHDLLDAMSVVGCEPNNIV-YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALK 730 (997)
Q Consensus 652 ~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 730 (997)
.|++++|.+.+....... ++... |.....+..+.|+++.|...+.++.+....+...........+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888765542 22333 333344558899999999999999886433222332344678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHH
Q 001911 731 VISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV-------VTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
.++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999875 556788889999999999999999999999987655322 133333444444555666677777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh
Q 001911 804 QMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP 883 (997)
Q Consensus 804 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 883 (997)
.+... .+.+......+...+...|+.++|.+.+++..+.. |+..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-----------------------------------~~~~ 297 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ-----------------------------------YDER 297 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------------------CCHH
Confidence 76553 23478889999999999999999999998887632 3332
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
. .++......++.+++++..++..+..|+ |...+..++..+...+++++|.+.++++.+ ..|+...+..|+.+
T Consensus 298 l--~~l~~~l~~~~~~~al~~~e~~lk~~P~---~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~ 370 (398)
T PRK10747 298 L--VLLIPRLKTNNPEQLEKVLRQQIKQHGD---TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADA 370 (398)
T ss_pred H--HHHHhhccCCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHH
Confidence 1 1233444569999999999999998876 888899999999999999999999999999 67999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhc
Q 001911 964 LIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~ 982 (997)
+.+.|+.++|.+++++-+.
T Consensus 371 ~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 371 LDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 9999999999999987543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-13 Score=143.74 Aligned_cols=283 Identities=15% Similarity=0.095 Sum_probs=229.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHH
Q 001911 653 HKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGC--NPNVYTYGSLIDRLFKDKRLDLALK 730 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~ 730 (997)
-+.++|...|..+.... .....+...+..+|...+++++|.++|+.+.+..+ .-+..+|.+.+.-+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 35689999999955443 44457778899999999999999999999988642 1266778877764432 12222
Q ss_pred HHH-HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 001911 731 VIS-KMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 731 ~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 808 (997)
.+. .+++. -+..+.+|-++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.-
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 22332 2456789999999999999999999999999985 44 6788888888888899999999999998864
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHH
Q 001911 809 GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYR 886 (997)
Q Consensus 809 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~ 886 (997)
.| +...|..+...|.+.++++.|+..|++..+.. |. .....
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-----------------------------------P~nsvi~~ 527 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-----------------------------------PSNSVILC 527 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-----------------------------------ccchhHHh
Confidence 45 46678888899999999999999999987643 43 44566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLI 965 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~ 965 (997)
.++..+.+.|+.|+|+++++++...+|. |+..-...+..+...+++++|+..+|++.+ +.|+ ..++..++++|-
T Consensus 528 ~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 528 HIGRIQHQLKRKDKALQLYEKAIHLDPK---NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYK 602 (638)
T ss_pred hhhHHHHHhhhhhHHHHHHHHHHhcCCC---CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence 7888999999999999999999999876 788888888999999999999999999999 8896 788999999999
Q ss_pred hcCCHHHHHHHHHHhhccCC
Q 001911 966 RVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.|+.+.|+.-+-=+.+.+.
T Consensus 603 ~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 603 RLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHccchHHHHhhHHHhcCCC
Confidence 99999999988866555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=153.51 Aligned_cols=260 Identities=17% Similarity=0.140 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 679 ALIDGFCKVGKLDEAQMVFSKMLEHG-CNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV 757 (997)
Q Consensus 679 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 757 (997)
.+...+.+.|++++|++++++..... ...+...|..+.......++.+.|.+.++++...+. -++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 45677778888888888886655443 233445555566666678888888888888887642 245566666666 678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-CAPNFVTYRVLINHCCASGLLDEAHNL 836 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 836 (997)
+++++|.+++.+.-+.. +++..+..++..+.+.|+++++.++++++.... ..++...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899988887766542 456667778888888899999999988877532 234677888888889999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 001911 837 LEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS 915 (997)
Q Consensus 837 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 915 (997)
+++..+.. |+ ......++..+...|+.+++.++++...+..|.
T Consensus 169 ~~~al~~~-----------------------------------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~- 212 (280)
T PF13429_consen 169 YRKALELD-----------------------------------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD- 212 (280)
T ss_dssp HHHHHHH------------------------------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-
T ss_pred HHHHHHcC-----------------------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-
Confidence 98887643 54 456777888888999999988888888765433
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 916 AASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
++..+..++.++...|++++|+..++++.+ ..| |+.+..++++++...|+.++|..++.++..
T Consensus 213 --~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 213 --DPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --SCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHT-----------------
T ss_pred --HHHHHHHHHHHhcccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence 667888889999999999999999999888 567 588888999999999999999988887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-11 Score=126.81 Aligned_cols=226 Identities=13% Similarity=0.044 Sum_probs=123.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 686 KVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYK 765 (997)
Q Consensus 686 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 765 (997)
-.|+.-.|..-|+..++....++. .|.-+...|....+.++....|++..+.+ +-|+.+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 345666666666666665443222 24445555666666666666666666543 3344455555555555566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001911 766 VMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYW 845 (997)
Q Consensus 766 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 845 (997)
=|++.++.... +...|-.+.-+..+.++++++...|++...+ ++-....|+....++..+++++.|.+.++...+...
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 66666654222 4455555555555666666666666666665 222456666666666666666666666665543210
Q ss_pred CCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHH
Q 001911 846 PTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY--RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL 923 (997)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 923 (997)
. ..++.-+...+ ..++.. .-.+++..|+.+++++++.+|. ...++.
T Consensus 494 ~----------------------------~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk---ce~A~~ 541 (606)
T KOG0547|consen 494 R----------------------------EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK---CEQAYE 541 (606)
T ss_pred c----------------------------cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch---HHHHHH
Confidence 0 00001111111 111112 2236666666666666666654 556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 924 LLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.|+....+.|+.++|+++|++...
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666666654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-09 Score=114.72 Aligned_cols=417 Identities=17% Similarity=0.093 Sum_probs=267.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-H
Q 001911 513 GLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVT-F 591 (997)
Q Consensus 513 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~ 591 (997)
.+.-|..+|..|.-+...+|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++.-....-.|+..+ +
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34457888999999999999999999999998765333 667888888999999999999999887665432344333 3
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc-----------CChHHHH
Q 001911 592 TALIDGHC-KAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV-----------HKVREAH 659 (997)
Q Consensus 592 ~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~ 659 (997)
...-..|. +.+..++++.+-.++........ -.-....|..+.-+|... ....+++
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~------------~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQR------------SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh------------hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 33333333 45777777777776655211000 011222333333333321 2245678
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001911 660 DLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 660 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
+.+++..+.+ +.|..+.-.+.--|+..++.+.|.+...+..+.+...+...|..|.-.+...+++.+|+.+.+...+.
T Consensus 465 qale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E- 542 (799)
T KOG4162|consen 465 QALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE- 542 (799)
T ss_pred HHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-
Confidence 8888887766 33433333444457788999999999999999877778899999999999999999999999887764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHH--HHH----HHHhccCCHHHHHHHHHHH------
Q 001911 740 YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GCYPNVVTYT--AMI----DGFGKVGKVDKCLELLRQM------ 805 (997)
Q Consensus 740 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~--~li----~~~~~~g~~~~A~~l~~~m------ 805 (997)
+..|......-+..-...++.++|+.....+... ..++-..+.. .+. ......++..+|.+...++
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 1223222222233333456777776655554421 0000000000 000 0000001111111111111
Q ss_pred -----------HhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHH
Q 001911 806 -----------SSKGCAP--N------FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVS 866 (997)
Q Consensus 806 -----------~~~g~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a 866 (997)
...-..| + ...|......+.+.++.++|...+.+....
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~----------------------- 679 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI----------------------- 679 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----------------------
Confidence 1101111 1 223444455556666666666665555432
Q ss_pred HHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH--HHH
Q 001911 867 LGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE--LYV 943 (997)
Q Consensus 867 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~ 943 (997)
.|- ...|+..+..+...|++++|.+.|..+...+|+ ...+...++.++...|+..-|.. ++.
T Consensus 680 ------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~---hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 680 ------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD---HVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred ------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 232 346788889999999999999999999999987 77788889999999998777777 999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 944 DMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 944 ~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.+++ +.|+ +++|+.|+.+..+.|+.++|.+-|....+..
T Consensus 745 dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 745 DALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999 6785 8999999999999999999999998876543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-11 Score=124.11 Aligned_cols=406 Identities=15% Similarity=0.124 Sum_probs=260.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 001911 455 VQCLCGAGKYEKAYNVIREMMSKGFIPD-TSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPD-VYTYTILIDNFCKAG 532 (997)
Q Consensus 455 ~~~~~~~g~~~~A~~ll~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g 532 (997)
..-+.++|++++|++.+.+.++. .|| ...|.....+|...|++++..+-.....+. .|+ +..+..-..++-..|
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence 34467899999999999999986 577 777888888999999999999988888876 344 456666677777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--------HHHh-C--CCCCCHHHHHHHHHHHHH-
Q 001911 533 LIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFE--------TMLS-K--GCIPNIVTFTALIDGHCK- 600 (997)
Q Consensus 533 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~--------~m~~-~--g~~~~~~~~~~li~~~~~- 600 (997)
++++|+.=. |-..++.+|....-...+.+++. +-.. . .+.|+.....+....+-.
T Consensus 198 ~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 198 KFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred cHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 888876321 22222222222222222222222 1111 1 123444333333222211
Q ss_pred -------cCC-----HHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCce---------eHHHHHH--HHHhcCChHH
Q 001911 601 -------AGD-----IERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVY---------TYGALID--GLCKVHKVRE 657 (997)
Q Consensus 601 -------~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~li~--~~~~~g~~~~ 657 (997)
.++ ..++.+.+..-...+.....+............++.- .-..++. .+.-.|+.-.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 000 1112221111111110000000000000000111111 1111222 3345789999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 658 AHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLE 737 (997)
Q Consensus 658 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 737 (997)
|..-|+..+.....++. .|--+...|....+.++....|.+..+.++. +..+|..-...++-.+++++|..-|++.+.
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999987643333 3777778899999999999999999998866 667787778888888999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-H
Q 001911 738 DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFV-T 816 (997)
Q Consensus 738 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~ 816 (997)
.. +-++..|-.+..+.-+.++++++...|++.+.+ ++--+..|+.....+...+++++|++.|+...+. .|... +
T Consensus 423 L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~ 498 (606)
T KOG0547|consen 423 LD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLI 498 (606)
T ss_pred cC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccc
Confidence 64 345677777777888899999999999999987 6657788999999999999999999999999875 45421 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh-hhHHHHHHHHHhc
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV-PAYRILIDHYIKA 895 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 895 (997)
+... .- -+.+|.-+++ +.+++..|.+++....+-+ |.. .+|..|+..-.+.
T Consensus 499 ~v~~-~p-----lV~Ka~l~~q--------------------wk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 499 IVNA-AP-----LVHKALLVLQ--------------------WKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQR 550 (606)
T ss_pred cccc-hh-----hhhhhHhhhc--------------------hhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHH
Confidence 1100 00 1123333332 1245677888888887554 553 3788999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q 001911 896 GRLEVALELHEEMTSF 911 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~ 911 (997)
|+.++|+++|++....
T Consensus 551 ~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 551 GKIDEAIELFEKSAQL 566 (606)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999998764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-10 Score=119.60 Aligned_cols=291 Identities=13% Similarity=0.113 Sum_probs=220.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCC
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN--PNVYTYGSLIDRLFKDKR 724 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~ 724 (997)
.++-...+.+++..-.......|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 345555577788888888888887766666666666677788999999999999987431 256677666533222111
Q ss_pred H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001911 725 L-DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 725 ~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
+ -.|..+++- . +--+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|++-++
T Consensus 315 Ls~LA~~v~~i---d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSNI---D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHh---c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 122222211 1 223456777888888889999999999999886433 45677777888999999999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh
Q 001911 804 QMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV 882 (997)
Q Consensus 804 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 882 (997)
+.++- .| |...|..|..+|...+...=|+-+|++..+.. +.|.
T Consensus 389 rAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k----------------------------------PnDs 432 (559)
T KOG1155|consen 389 RAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK----------------------------------PNDS 432 (559)
T ss_pred HHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC----------------------------------CCch
Confidence 99985 56 88999999999999999999999999887642 2345
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-HHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD-----GSPE-LST 956 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~ 956 (997)
-.|..|+.+|.+.++.++|+..|+++...+. .+..++..|+..|.+.++.++|...|++-++.. ..|+ ..+
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~d---te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGD---TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 5899999999999999999999999987642 367889999999999999999999999987732 3343 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..-|+.-+.+.+++++|..+....+.
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 66789999999999999888776654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-09 Score=111.54 Aligned_cols=373 Identities=13% Similarity=0.057 Sum_probs=262.3
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HH
Q 001911 478 GFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNV--VT 555 (997)
Q Consensus 478 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~ 555 (997)
+...|...+-...-.+-+.|....|++.|......- +-.-.+|.-|... .-+.+.+.. +... ...|. ..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~~~----l~~~-l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEILSI----LVVG-LPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHHHH----HHhc-CcccchHHH
Confidence 344555555444555667788999999998877642 2233344333332 222332222 2211 11121 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCC
Q 001911 556 YTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCK 635 (997)
Q Consensus 556 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (997)
--.+..++-.....+++.+-.+.+...|++.+...-+....+.....++++|+.+|+++.+...- -
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY--------------R 295 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY--------------R 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--------------c
Confidence 12345566666788899999999999887777766666667778899999999999999876421 1
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDA-MSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGS 714 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 714 (997)
-.|..+|+.++ |++..+-. +..+-+ ....+ +--+.|...+.+-|.-.++.++|...|++.++.++. ....|+.
T Consensus 296 l~dmdlySN~L--Yv~~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTL 369 (559)
T KOG1155|consen 296 LDDMDLYSNVL--YVKNDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTL 369 (559)
T ss_pred chhHHHHhHHH--HHHhhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHH
Confidence 22344555444 33332221 111111 11111 233456778888889999999999999999998765 6778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 001911 715 LIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK 794 (997)
Q Consensus 715 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 794 (997)
+.+-|...++...|++-++..++-. +.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNR 447 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhcc
Confidence 9999999999999999999999864 6788999999999999999999999999999863 3388999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhc
Q 001911 795 VDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMG 874 (997)
Q Consensus 795 ~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 874 (997)
.++|++-|++...-| ..+...+..|.+.|.+.++.++|..++++-.+.. ...
T Consensus 448 ~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~---------------------------~~e 499 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS---------------------------ELE 499 (559)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------------------------Hhh
Confidence 999999999999875 3466889999999999999999999998865521 000
Q ss_pred cCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 875 KTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 875 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
....| ...+...|+..+.+.+++++|.........
T Consensus 500 -g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 500 -GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred -cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 01122 233444577888888999888876666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.4e-09 Score=106.49 Aligned_cols=455 Identities=15% Similarity=0.101 Sum_probs=325.1
Q ss_pred HHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 429 FELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDT-STYSKVIGYLCDASEAEKAFLLFQ 507 (997)
Q Consensus 429 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 507 (997)
+..|..+|+..++.+ .-+...+..++.+=.++..+..|..++++.+.. -|-+ ..|-..+.+--..|++..|.++|+
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 455667777777655 345556667777778999999999999999876 2332 345556656667799999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CC-C
Q 001911 508 EMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSK-GC-I 585 (997)
Q Consensus 508 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~-~ 585 (997)
.-.+. .|+...|.+.|+.-.+-+.++.|..+++..+-. .|++.+|--...-=.+.|+...|..+|+...+. |- .
T Consensus 166 rW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 98765 799999999999999999999999999998864 589999988888888899999999999988764 10 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCC---hHHHHH--
Q 001911 586 PNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHK---VREAHD-- 660 (997)
Q Consensus 586 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~-- 660 (997)
-+...+.+....-.++..++.|.-+|+-....-..+. ....|..+...=-+-|+ ++++.-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r---------------aeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR---------------AEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 1223344444444567788889989888776531111 12233333332223343 333321
Q ss_pred ---HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------hHHHHHHHH---HhcCCHHHH
Q 001911 661 ---LLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVY------TYGSLIDRL---FKDKRLDLA 728 (997)
Q Consensus 661 ---~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~---~~~g~~~~A 728 (997)
-++.+...+ +.|..+|--.++.-...|+.+...++|++++..-++.... .|.-+=-++ ....+.+.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 234445444 6678888888888888999999999999999864322211 121111112 356889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001911 729 LKVISKMLEDSYAPNVVIYTEMIDGL----IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 804 (997)
.++|+..++. ++....|+.-+=-+| .++.++..|.+++..++. ..|...+|...|..-.+.+++|.+..+|++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999884 444555665554444 467899999999998874 578889999999999999999999999999
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh
Q 001911 805 MSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP 883 (997)
Q Consensus 805 m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 883 (997)
.++- .| |..+|......=...|+.+.|..+|+-..... .+.....
T Consensus 463 fle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp--------------------------------~ldmpel 508 (677)
T KOG1915|consen 463 FLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQP--------------------------------ALDMPEL 508 (677)
T ss_pred HHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--------------------------------ccccHHH
Confidence 9997 46 78899998888889999999999998776532 0011122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLS-----LAR-----------KIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 947 (997)
.|..-++.-...|.++.|..+|+++++..+ -..+|..++.--. +.+ ....|..+|+++..
T Consensus 509 lwkaYIdFEi~~~E~ekaR~LYerlL~rt~----h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 509 LWKAYIDFEIEEGEFEKARALYERLLDRTQ----HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHhcc----cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 455666666789999999999999998653 3446666654332 223 45667777777654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-09 Score=108.64 Aligned_cols=450 Identities=15% Similarity=0.092 Sum_probs=276.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001911 481 PDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALI 560 (997)
Q Consensus 481 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 560 (997)
.+...|......-...+++..|..+|+..+.... .+...|-.-+.+-.+...+..|..+++..+..=+..|. .|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 3445555555555567788889999998887653 36777888888888888999999999988875333233 344445
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCce
Q 001911 561 HAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVY 640 (997)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (997)
.+=-..|+...|.++|+.-.+- .|+...|.+.|+.-.+-+.++.|..+|++..- +.|++.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~------------------~HP~v~ 208 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL------------------VHPKVS 208 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe------------------ecccHH
Confidence 5555678999999999888764 78999999999998899999999999988864 478888
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHH
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVV-GC-EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPN-VYTYGSLID 717 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~ 717 (997)
.|-.....=-+.|+...|..+|....+. |- ..+...+.+...-=.++..++.|.-+|+-.++.-++.. ...|..+..
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 8888888778889988888888877653 10 11223344444444456778888888888887643322 223333332
Q ss_pred HHHhcCC---HHHHH-----HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHH--
Q 001911 718 RLFKDKR---LDLAL-----KVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVV--TYTAM-- 785 (997)
Q Consensus 718 ~~~~~g~---~~~A~-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l-- 785 (997)
.--+-|+ +++++ --++.++..+ +.|-.+|-..+..-...|+.+...+++++++.. ++|-.. .|...
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 2222333 33333 2344455443 456777777777777788999999999988875 555221 11111
Q ss_pred --HH-HH---hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 001911 786 --ID-GF---GKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHC----CASGLLDEAHNLLEEMKQTYWPTHVAGYRK 854 (997)
Q Consensus 786 --i~-~~---~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 854 (997)
|+ ++ ....+.+.+.++|+.+++. .| ...||.-+--.| .++.++..|.+++....... |....++.
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~KlFk~ 442 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhHHHH
Confidence 11 11 3567888888999988883 55 455555544444 46778888888887765432 23233333
Q ss_pred HHHhHh--HhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc
Q 001911 855 VIEGFS--REFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA 932 (997)
Q Consensus 855 ~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 932 (997)
.|..-. +++...-.++++..+-+ +.+..+|...+..-...|+++.|..+|+-+...+. .......|-..+.--...
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-ldmpellwkaYIdFEi~~ 520 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPA-LDMPELLWKAYIDFEIEE 520 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-cccHHHHHHHhhhhhhhc
Confidence 322211 23333334444433322 12233455555555555666666666666655432 111222333333333345
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001911 933 RKIDKAFELYVDMIRKDGSPELSTFVHLIK 962 (997)
Q Consensus 933 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 962 (997)
|.++.|..+|+++++ ..+...+|+..+.
T Consensus 521 ~E~ekaR~LYerlL~--rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 521 GEFEKARALYERLLD--RTQHVKVWISFAK 548 (677)
T ss_pred chHHHHHHHHHHHHH--hcccchHHHhHHH
Confidence 666666666666666 3344445555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-10 Score=119.11 Aligned_cols=280 Identities=12% Similarity=0.092 Sum_probs=225.0
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
..+........+-+...+++++..++++.+.+.. ++....+..-|..+...|+..+-..+=.++++.-+. ...+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence 4445555566667778899999999999998876 677777777788999999999988888899988544 77899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccC
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g 793 (997)
.--|...|+..+|.+.|.+....+ +.-...|-.....|+-.|..++|...+..+.+. |.. -+..|. .--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYl--gmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYL--GMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHH--HHHHHHhc
Confidence 999999999999999999987543 223467889999999999999999999888764 322 233343 34588899
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 794 KVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
+++-|.++|.+.... .| |+...+-+.-.....+.+.+|..+|+..... +..
T Consensus 395 n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~--------------------------ik~ 446 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEV--------------------------IKS 446 (611)
T ss_pred cHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH--------------------------hhh
Confidence 999999999998864 66 6888888888888889999999999886531 111
Q ss_pred hccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 873 MGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 873 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
..+.. .--.++++.|+.+|.+.+++++|+..+++++...|. +..++..++.+|...|+++.|+..|.+.+. +.|
T Consensus 447 ~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k---~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p 520 (611)
T KOG1173|consen 447 VLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK---DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKP 520 (611)
T ss_pred ccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC---chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCC
Confidence 11111 113467889999999999999999999999988775 899999999999999999999999999999 889
Q ss_pred CHH
Q 001911 953 ELS 955 (997)
Q Consensus 953 ~~~ 955 (997)
|..
T Consensus 521 ~n~ 523 (611)
T KOG1173|consen 521 DNI 523 (611)
T ss_pred ccH
Confidence 853
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-14 Score=146.91 Aligned_cols=261 Identities=21% Similarity=0.220 Sum_probs=114.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 001911 644 ALIDGLCKVHKVREAHDLLDAMSVVG-CEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKD 722 (997)
Q Consensus 644 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 722 (997)
.+...+.+.|++++|.+++++..... .+.|...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778889999999999996654433 2445555666677777889999999999999988654 56667777776 789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001911 723 KRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKG-CYPNVVTYTAMIDGFGKVGKVDKCLEL 801 (997)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l 801 (997)
+++++|.++++...+. .++...+..++..+.+.|+++++.++++++.+.. .+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887765 3566778888899999999999999999987642 356788888899999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 802 LRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 802 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
+++.++. .| |......++..+...|+.+++..+++...+.. +.
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~----------------------------------~~ 212 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA----------------------------------PD 212 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----------------------------------HT
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC----------------------------------cC
Confidence 9999997 57 57788899999999999999999998876532 13
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+...+..++.+|...|+.++|+..++++.+..|. |+.....++.++...|+.++|..++.++.+
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~---d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD---DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence 3345678999999999999999999999988775 899999999999999999999999998865
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-11 Score=132.24 Aligned_cols=282 Identities=12% Similarity=0.056 Sum_probs=216.2
Q ss_pred cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH-
Q 001911 601 AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGAL-IDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYD- 678 (997)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~- 678 (997)
.|++++|.+.+....+. .++...+..+ .....+.|+++.|.+.+.++.+. .|+...+.
T Consensus 97 eGd~~~A~k~l~~~~~~------------------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~ 156 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------------------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVE 156 (398)
T ss_pred CCCHHHHHHHHHHHHhc------------------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence 68999999877765442 1222233333 34447899999999999999875 45543322
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHH
Q 001911 679 -ALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNV-------VIYTEM 750 (997)
Q Consensus 679 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l 750 (997)
.....+...|+++.|...++++.+..+. +...+..+...|.+.|++++|.+++..+.+.+..++. ..|..+
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3467888999999999999999998755 6778889999999999999999999999987644222 123333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLL 830 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 830 (997)
+.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+++..+. .|+... .++.+....++.
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~ 310 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNP 310 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCCh
Confidence 44334445556666666666443 3457888899999999999999999999999985 555532 234444566999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVALELHEEMT 909 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 909 (997)
+++.+.+++..+.+ |+.+ .+..++..+.+.|+|++|.+.|+.+.
T Consensus 311 ~~al~~~e~~lk~~-----------------------------------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 311 EQLEKVLRQQIKQH-----------------------------------GDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHHhhC-----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988754 5544 57789999999999999999999999
Q ss_pred cCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 910 SFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 910 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+..| +...+..++.++.+.|+.++|..+|++.+.
T Consensus 356 ~~~P----~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 356 KQRP----DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8764 677788899999999999999999999876
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-09 Score=105.77 Aligned_cols=459 Identities=15% Similarity=0.131 Sum_probs=273.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 001911 274 GCFAYSLCKAGRWKEALELIEK--EEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKR 351 (997)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 351 (997)
.++..++.+.|++++|...++- ....++...|.-|.-++.-.|.+.+|..+..+.. .+......+.+...+.+
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhC
Confidence 3444444455555555544432 1223444555555555555566666655544332 22333444445555667
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHH
Q 001911 352 QLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFEL 431 (997)
Q Consensus 352 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 431 (997)
+-++-..+++.+.+. ..-.-+|..+....-.+++|.++|.++... .|+....|.-+.
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~A---------------- 192 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMA---------------- 192 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHH----------------
Confidence 766666666665432 233445666666667789999999998864 355555554443
Q ss_pred HHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 432 AEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKR 511 (997)
Q Consensus 432 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 511 (997)
.||.+..-++-+.+++...++. ++.++...|.......+.=+-..|.+-..++..
T Consensus 193 ------------------------LCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad 247 (557)
T KOG3785|consen 193 ------------------------LCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD 247 (557)
T ss_pred ------------------------HHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence 3467888888899999888776 233344455544444443222334444444444
Q ss_pred CCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 001911 512 NGLIPDVYTYTILIDNFCKA-----GLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIP 586 (997)
Q Consensus 512 ~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~ 586 (997)
.+-.. -..+.-+++. ..-+.|++++-.+.+. .|. .--.|+.-|.+.++..+|..+.+++. +.
T Consensus 248 N~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----Pt 314 (557)
T KOG3785|consen 248 NIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD----PT 314 (557)
T ss_pred ccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC----CC
Confidence 32211 1123334443 3457888888877764 222 33446677889999999999887764 22
Q ss_pred CHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHH
Q 001911 587 NIVTFTALIDGHCKAG-------DIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAH 659 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 659 (997)
++.-|..-.-.+...| .+.-|.+.|+-.-++.. ...++.--.++...+.-..++++++
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~---------------ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL---------------ECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc---------------ccccccchHHHHHHHHHHHHHHHHH
Confidence 3333322222222322 34556666665543321 1223334556677777788899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001911 660 DLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTY-GSLIDRLFKDKRLDLALKVISKMLED 738 (997)
Q Consensus 660 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~ 738 (997)
-.++.+...-...|...+| +..+++..|++.+|+++|-......++ +..+| ..|.++|.+.++++.|..++-++-.
T Consensus 380 ~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t- 456 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT- 456 (557)
T ss_pred HHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-
Confidence 9999888765455555554 788999999999999999888776666 44555 5667889999999999887765532
Q ss_pred CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHH
Q 001911 739 SYAPNVVI-YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVT 816 (997)
Q Consensus 739 ~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~ 816 (997)
+.+..+ ...+.+-|-+.+.+=-|-+.|+.+... .|++.-|. |+--....+|+.+....-.| -..+
T Consensus 457 --~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~ 523 (557)
T KOG3785|consen 457 --PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQ 523 (557)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHHHHHHcCCCCCCchhH
Confidence 233433 334456777889998999999988775 56665553 33334456677666543333 2344
Q ss_pred HHHHHHHHHhcCC
Q 001911 817 YRVLINHCCASGL 829 (997)
Q Consensus 817 ~~~l~~~~~~~g~ 829 (997)
..-++..+...++
T Consensus 524 ~rEVvhllr~~~n 536 (557)
T KOG3785|consen 524 MREVVHLLRMKPN 536 (557)
T ss_pred HHHHHHHHHhCCC
Confidence 5555555554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-11 Score=130.79 Aligned_cols=288 Identities=13% Similarity=0.064 Sum_probs=210.8
Q ss_pred HHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCc-eeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 001911 599 CKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNV-YTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVY 677 (997)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 677 (997)
...|+++.|.+.+.+..+. .|+. ..+-.........|+++.|.+.+.+..+....+.....
T Consensus 95 ~~~g~~~~A~~~l~~~~~~------------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~ 156 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH------------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE 156 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH
Confidence 4679999999999887653 3433 33444456778889999999999998765422222344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH---H
Q 001911 678 DALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYT-EMID---G 753 (997)
Q Consensus 678 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~---~ 753 (997)
-.....+...|+++.|...++.+.+..+. +..++..+...+...|++++|.+.+..+.+.+.. +...+. .-.. +
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 44577888999999999999999999755 6678889999999999999999999999988643 333332 1111 2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhc
Q 001911 754 LIKVGKTEEAYKVMLMMEEKGC---YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVT---YRVLINHCCAS 827 (997)
Q Consensus 754 ~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~l~~~~~~~ 827 (997)
+...+..+++.+.+..+.+... +.++..+..++..+...|+.++|.+.+++..++ .||... ...........
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCC
Confidence 2333333444445555554422 137888999999999999999999999999997 455432 12222233445
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh---hHHHHHHHHHhcCCHHHHHHH
Q 001911 828 GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP---AYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 828 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~ 904 (997)
++.+.+.+.+++..+.. |+.+ ....++..+.+.|++++|.+.
T Consensus 313 ~~~~~~~~~~e~~lk~~-----------------------------------p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNV-----------------------------------DDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred CChHHHHHHHHHHHHhC-----------------------------------CCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 77888888887776542 4443 456899999999999999999
Q ss_pred HHH--HhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 905 HEE--MTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 905 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
|++ +.+..| +...+..++..+.+.|+.++|.++|++...
T Consensus 358 le~a~a~~~~p----~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 358 FKNVAACKEQL----DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhHHhhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 994 555544 666677999999999999999999999755
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-07 Score=106.03 Aligned_cols=549 Identities=17% Similarity=0.197 Sum_probs=319.4
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----------CCCCCCchhHHHHH
Q 001911 209 KCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLD-----------AGFSMDGFTLGCFA 277 (997)
Q Consensus 209 ~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----------~g~~~~~~~~~~li 277 (997)
.|.-.-.+++++++++.|...+++.|..++..+..-|+..=..+.-.++|+.... -++..|+.+..-.|
T Consensus 652 ~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYI 731 (1666)
T KOG0985|consen 652 NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYI 731 (1666)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHH
Confidence 3444566778888888888888888877776666666654444545555554432 13566778888899
Q ss_pred HHHHhcCCHHHHHHHHHhC------------------------------CCCCCHHHHH------HHHHHHHccCChHHH
Q 001911 278 YSLCKAGRWKEALELIEKE------------------------------EFVPDTVLYT------KMISGLCEASLFEEA 321 (997)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~------------------------------~~~p~~~~~~------~li~~~~~~g~~~~A 321 (997)
.+-|+.|++.|..++.++. ++.+|.+.|- ..|..|.+.=++...
T Consensus 732 qAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~ 811 (1666)
T KOG0985|consen 732 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRT 811 (1666)
T ss_pred HHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCccc
Confidence 9999999999998875542 1233333321 234555555444444
Q ss_pred HHHHHHHHhCCCCCcHH-----------hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 322 MDLLNRMRARSCIPNVV-----------TFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSY 390 (997)
Q Consensus 322 ~~~~~~m~~~~~~p~~~-----------t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 390 (997)
-.+...+..-.|.-+.+ .-.-+..-+-+.+++.--...++..+..| ..++.++|+|...|...++-.+
T Consensus 812 p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE 890 (1666)
T KOG0985|consen 812 PQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE 890 (1666)
T ss_pred chhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH
Confidence 44444443333322211 01112222334445555556677777777 3467778877777665443222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCC------------------------------------CCchHHHHHH-
Q 001911 391 AYKLLSKMRKCGFQPGYVVYNILIGGICGNEDL------------------------------------PASDVFELAE- 433 (997)
Q Consensus 391 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~------------------------------------~~~~~~~~a~- 433 (997)
-. + + -|...-+..++-||..++- ...++|++.+
T Consensus 891 ~f--L----k----eN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~ 960 (1666)
T KOG0985|consen 891 RF--L----K----ENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN 960 (1666)
T ss_pred Hh--c----c----cCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh
Confidence 11 0 0 0111111122222222110 0112233322
Q ss_pred -------HHHHHHHHcCcc--ccccchhHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHH
Q 001911 434 -------KAYAEMLNAGVV--LNKINVSNFVQCLCGAGKYEKAYNVIREMMSKG--FIPDTSTYSKVIGYLCDASEAEKA 502 (997)
Q Consensus 434 -------~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A 502 (997)
.+.++....+++ .|+..++..+.++...+-..+-++++++++-.. +..+...-+.||-...+. +....
T Consensus 961 e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trV 1039 (1666)
T KOG0985|consen 961 EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRV 1039 (1666)
T ss_pred ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHH
Confidence 334444444332 345556666777777777777777777776432 111222233344333332 33444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001911 503 FLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSK 582 (997)
Q Consensus 503 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 582 (997)
.+..+++...+. |+ +.......+-+++|..+|+..- .+....+.|+.- -+..+.|.+.-++.
T Consensus 1040 m~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~--- 1101 (1666)
T KOG0985|consen 1040 MEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC--- 1101 (1666)
T ss_pred HHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh---
Confidence 455554443321 11 2334445666778887777653 244444444432 35666666665553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHH
Q 001911 583 GCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLL 662 (997)
Q Consensus 583 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 662 (997)
..+..|+.+..+-.+.|...+|++-|-+. .|+..|.-.++...+.|.+++-.+.+
T Consensus 1102 ---n~p~vWsqlakAQL~~~~v~dAieSyika----------------------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1102 ---NEPAVWSQLAKAQLQGGLVKDAIESYIKA----------------------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred ---CChHHHHHHHHHHHhcCchHHHHHHHHhc----------------------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 24566788888888888888887766543 45556788888888888888888887
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001911 663 DAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAP 742 (997)
Q Consensus 663 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 742 (997)
....+..-.|... +.||-+|++.++..+-.++. .-|+......+.+-|...+.++.|.-+|..
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-------- 1219 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN-------- 1219 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------
Confidence 7776655455443 46778888888877655543 236777777788888888888888777754
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
+..|..|...+...|.+..|...-+++. +..||..+-.+|...+.+.-| +|.-..+.....-..-++.
T Consensus 1220 -vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1220 -VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIE 1287 (1666)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHH
Confidence 3356667777777788888877666543 567888888888776655433 3333333345666777888
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~ 841 (997)
-|...|-++|-+.+++...
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhh
Confidence 8888888888888887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-09 Score=113.22 Aligned_cols=456 Identities=18% Similarity=0.168 Sum_probs=307.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARN 539 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 539 (997)
..+++...+++.+.++.. .+-...|.....-.++..|+-++|.+..+......+. +.++|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 568999999999998874 3333345555555567789999999999988876654 78899999888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 001911 540 WFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAE 619 (997)
Q Consensus 540 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 619 (997)
.|......+.. |...|.-+...-++.|+++.......++.+.. +.....|..+..++.-.|+...|..+.+...+...
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999987654 77888888777888899988888888877653 34556788888888889999999999999877542
Q ss_pred CCchhHHHHHhccCCCCCCceeHHHHH------HHHHhcCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHH
Q 001911 620 ISDVDIYFRVLDNNCKEPNVYTYGALI------DGLCKVHKVREAHDLLDAMSVVGCEPNNIV-YDALIDGFCKVGKLDE 692 (997)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~ 692 (997)
..|+...+.... ....+.|..++|.+.+..-... ..|... -.+-...+.+.+++++
T Consensus 175 ---------------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 175 ---------------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred ---------------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHh
Confidence 134444433322 2456678888888888766432 223222 3345667788999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHH-HHHHhcCCHHHHH-HHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 693 AQMVFSKMLEHGCNPNVYTYGSLI-DRLFKDKRLDLAL-KVISKMLEDSY---APNVVIYTEMIDGLIKVGKTEEAYKVM 767 (997)
Q Consensus 693 A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~-~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 767 (997)
|..++..++..+ ||...|.... .++.+-.+.-+++ .+|....+.-. .|-....+ ......-.+..-+++
T Consensus 238 A~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 238 AVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYL 311 (700)
T ss_pred HHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHH
Confidence 999999999984 6666665544 4444344444444 66666554311 11111111 111122334456677
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh----CCC----------CCC--HHHHHHHHHHHHhcCCHH
Q 001911 768 LMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS----KGC----------APN--FVTYRVLINHCCASGLLD 831 (997)
Q Consensus 768 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~----------~p~--~~~~~~l~~~~~~~g~~~ 831 (997)
..+.++|+++- +..+...|-.-...+=-.++.-.+.. .|. .|. ..|+..++..+-+.|+++
T Consensus 312 ~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 78888887753 33444334322222211111111111 111 343 345667888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 832 EAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV-PAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 832 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
.|..+++...+- .|+. ..|..-+.++...|++++|..+++++.+
T Consensus 389 ~A~~yId~AIdH-----------------------------------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 389 VALEYIDLAIDH-----------------------------------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred HHHHHHHHHhcc-----------------------------------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 999999987642 4653 4677788999999999999999999998
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--C---H-HHHHHH--HHHHHhcCCHHHHHHHHHHhhc
Q 001911 911 FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP--E---L-STFVHL--IKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~---~-~~~~~l--~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+- +|..+=..-+.=..++++.++|.++..+..+.|... + . -.|+.+ +.+|.++|+|-+|++=+..+-.
T Consensus 434 lD~---aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 434 LDT---ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred ccc---hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 752 132222233333456899999999999999877422 1 1 245544 6789999999999887766544
Q ss_pred c
Q 001911 983 T 983 (997)
Q Consensus 983 ~ 983 (997)
.
T Consensus 511 ~ 511 (700)
T KOG1156|consen 511 H 511 (700)
T ss_pred H
Confidence 3
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-09 Score=114.07 Aligned_cols=284 Identities=12% Similarity=0.024 Sum_probs=216.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 516 PDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALI 595 (997)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 595 (997)
-+......-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.+|.+.- +....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 355566666677778889999999999988764 3456666666778888888888777777777653 55677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNI 675 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 675 (997)
--|...|+.++|.+.|.+..... +.-...|-.+...|+-.|..++|...+....+.= +-...
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-----------------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hl 381 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-----------------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHL 381 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-----------------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcc
Confidence 88888899999999998886543 2234578888889999999999998888775521 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHH
Q 001911 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLED------SYAPNVVIYTE 749 (997)
Q Consensus 676 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~ 749 (997)
-+--+.--|.+.++.+.|.++|.+.....+. |+..++-+.-.....+.+.+|..+|+..+.. .......+++.
T Consensus 382 P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 382 PSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 1223444577889999999999998887544 7778888877778888999999999887632 11124567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 750 MIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH 823 (997)
Q Consensus 750 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~ 823 (997)
|...|.+.+++++|+..+++...... -+..++.++.-.|...|+++.|++.|.+.+.. .|+..+...++..
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 99999999999999999999988743 38889999988899999999999999998864 7887666666653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-08 Score=103.84 Aligned_cols=438 Identities=15% Similarity=0.142 Sum_probs=240.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 001911 249 DRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK--EEFVPDTVLYTKMISGLCEASLFEEAMDLLN 326 (997)
Q Consensus 249 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (997)
+.+..+....+.+++ +.+....+.....-.++..|+-++|...... .....+-+.|.++.-.+-...++++|+..|.
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 334444444444444 2233333333333344555566666555443 1223467788888888888889999999999
Q ss_pred HHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC
Q 001911 327 RMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCG-FQP 405 (997)
Q Consensus 327 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 405 (997)
.....+ +.|...+.-+--.-.+.|+++..........+.. +.....|..++.++.-.|++..|..+++...+.- -.|
T Consensus 100 nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 100 NALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 888764 4455555555444567788887777777776653 3346678888888999999999999999987643 235
Q ss_pred CHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 001911 406 GYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTST 485 (997)
Q Consensus 406 ~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~ 485 (997)
+...|.-...-+. -...+.+.|.+++|++.+..-... ..|-..
T Consensus 178 s~~~~e~se~~Ly-----------------------------------~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla 220 (700)
T KOG1156|consen 178 SKEDYEHSELLLY-----------------------------------QNQILIEAGSLQKALEHLLDNEKQ--IVDKLA 220 (700)
T ss_pred CHHHHHHHHHHHH-----------------------------------HHHHHHHcccHHHHHHHHHhhhhH--HHHHHH
Confidence 5555544332221 112245678888888888766443 223332
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 486 Y-SKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYT-ILIDNFCKAGLIEQAR-NWFDEMVKEGCDPNVVTYTALIHA 562 (997)
Q Consensus 486 ~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~ll~~ 562 (997)
+ ..-...+.+.+++++|..++..++.. .||...|. .+..++.+-.+.-++. .+|....+.-.. ....-..-+..
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsv 297 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSV 297 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHH
Confidence 2 33445677889999999999999987 45555544 4455554444444555 666666554111 11111111111
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--CCchhHHHHHhccCCCCCCce
Q 001911 563 YLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAE--ISDVDIYFRVLDNNCKEPNVY 640 (997)
Q Consensus 563 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 640 (997)
.-...-.+...+++..+.+.|+++-... +...|-... +.. +++++...-. .+...++....+...-+|...
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 1122334455667778888886653333 333332211 111 2222211000 000000000000011244443
Q ss_pred eHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 001911 641 TYG--ALIDGLCKVHKVREAHDLLDAMSVVGCEPNN-IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLID 717 (997)
Q Consensus 641 ~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 717 (997)
.|+ -++..|-+.|+++.|...++..+.+ .|+. ..|..=.+.+...|++++|..++++..+.+ .+|...-.--..
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAK 447 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHH
Confidence 333 3445566667777777777766644 3442 233344456666677777777777766654 234444334455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 001911 718 RLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 718 ~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
-..+.++.++|.++.....+.|
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHccccHHHHHHHHHhhhcc
Confidence 5556666666666666665554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-09 Score=111.19 Aligned_cols=285 Identities=14% Similarity=0.124 Sum_probs=224.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 001911 652 VHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKV 731 (997)
Q Consensus 652 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 731 (997)
.|++.+|+++..+-.+.+ +-....|..-..+--+.|+.+.+-.++.++.+.-..++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999999988776 3445566667777888999999999999999985566777888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHH
Q 001911 732 ISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV-------VTYTAMIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~ 804 (997)
.+++.+.+ +.+.........+|.+.|++.+...++.++.+.|.--+. .+|+.++.-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999876 556778899999999999999999999999998876453 3677777666666666665566766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhh
Q 001911 805 MSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPA 884 (997)
Q Consensus 805 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 884 (997)
...+ .+-+...-.+++.-+...|+.++|.++.++..+..|.+.+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---------------------------------- 299 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---------------------------------- 299 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----------------------------------
Confidence 6554 34467777888889999999999999999988776533211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL 964 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y 964 (997)
....+.+-++.+.=++..++..+..|+ ++..+.+|+..|.+.+.|.+|...++.+++ ..|+.+.|..+++++
T Consensus 300 ---~~~~~l~~~d~~~l~k~~e~~l~~h~~---~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~ 371 (400)
T COG3071 300 ---RLIPRLRPGDPEPLIKAAEKWLKQHPE---DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADAL 371 (400)
T ss_pred ---HHHhhcCCCCchHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHH
Confidence 112233456666667777777766554 667888888888888888888888888888 678888888888888
Q ss_pred HhcCCHHHHHHHHHHhh
Q 001911 965 IRVNKWEEALQLSYSIC 981 (997)
Q Consensus 965 ~~~g~~~eA~~~~~~~~ 981 (997)
-+.|+.++|.+..+..+
T Consensus 372 ~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 372 DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHcCChHHHHHHHHHHH
Confidence 88888888888877655
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-11 Score=128.12 Aligned_cols=284 Identities=15% Similarity=0.111 Sum_probs=184.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHH
Q 001911 498 EAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGC--DPNVVTYTALIHAYLKARKPSQANEL 575 (997)
Q Consensus 498 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~ 575 (997)
+..+|...|..+...- .-...+...+..+|...+++++|.++|+.+.+..+ .-+...|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 3466777777744432 22346666777778888888888888887776532 12556666665543221 11222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCC
Q 001911 576 F-ETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHK 654 (997)
Q Consensus 576 ~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 654 (997)
+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.. +....+|+.+..-+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-----------------p~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-----------------PRFAYAYTLLGHESIATEE 470 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-----------------CccchhhhhcCChhhhhHH
Confidence 2 2222222 4566788888888888888888888888877642 3366777777777777778
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
+|.|...|+..+... +.+..+|.-+.-.|.+.++++.|+-.|+++.+.++. +.+....+...+.+.|+.++|++++++
T Consensus 471 ~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred HHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 888888888776443 233445555667777888888888888888777654 555556666677777888888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 001911 735 MLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 735 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 808 (997)
+...+. .|+..--..+..+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|--+.+.
T Consensus 549 A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 549 AIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 776542 34433334455566677778888888777774 2224455666667777777777777777777664
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-10 Score=110.20 Aligned_cols=257 Identities=16% Similarity=0.176 Sum_probs=125.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHH
Q 001911 566 ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGAL 645 (997)
Q Consensus 566 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 645 (997)
++++++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..|.|+++.+.+..+.... ........-.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT-------------~~qr~lAl~qL 113 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT-------------FEQRLLALQQL 113 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc-------------hHHHHHHHHHH
Confidence 345555555555555432 2233344455555555566666666655554421100 00011122334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHh
Q 001911 646 IDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVY----TYGSLIDRLFK 721 (997)
Q Consensus 646 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~ 721 (997)
..-|...|-++.|.++|..+...+ .--......|+..|-...+|++|+++-+++.+.+..+... .|-.+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 444555566666666666655433 2233445556666666666666666666666554433221 23334444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLEL 801 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 801 (997)
..+.+.|..++.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++...+
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 555666666666655543 1222223334455555666666666666665553333334455555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 802 LRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEM 840 (997)
Q Consensus 802 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 840 (997)
+.++.+. .++...-..+...-....-.+.|..++.+-
T Consensus 272 L~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 272 LRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred HHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 6665554 233333333333333333344444444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.9e-08 Score=105.59 Aligned_cols=479 Identities=13% Similarity=0.054 Sum_probs=294.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGY---LCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQ 536 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 536 (997)
..+..++++.-+.....++...+..++..+..+ |...++.+++ ++-........|....+.+.+.-
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl--------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL--------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH---------
Confidence 456677888888887777777777776665543 3445666666 33333333333332222222111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
+-.+.++....+.-|...|..+.-+....|+++.+.+.|++.... .......|..+...+...|.-..|..+++....
T Consensus 308 -m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 308 -MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 112222222233457788888888999999999999999998753 344567788888899999999999999988765
Q ss_pred ccCCCchhHHHHHhccCCCCCCceeHHHHHH-HH-HhcCChHHHHHHHHHHHhc--CC--CCCHHHHHHHHHHHHhc---
Q 001911 617 NAEISDVDIYFRVLDNNCKEPNVYTYGALID-GL-CKVHKVREAHDLLDAMSVV--GC--EPNNIVYDALIDGFCKV--- 687 (997)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~-~~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~li~~~~~~--- 687 (997)
..+ .|+..+--.++. .| -+.+.+++++++-.+.... +. ......|..+.-+|...
T Consensus 386 ~~~----------------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 386 KSE----------------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred ccc----------------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 421 233333323333 23 3457777777777666551 11 12334444444444322
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001911 688 --------GKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGK 759 (997)
Q Consensus 688 --------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 759 (997)
....++++.+++..+.+.. |+.....+.--|+..++++.|.+...+..+.+-..+...|..|.-.+...++
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 1356778888888887654 3333333444577889999999999999988667788999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 760 TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAPNFVTYRVLINHCCASGLLDEAHNLLE 838 (997)
Q Consensus 760 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 838 (997)
+.+|+.+.+...+. ..-|......-+..-..-++.++|+.....++.- .-.|... ..|.-........
T Consensus 529 ~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q----------~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 529 LKEALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ----------QTLDEGKLLRLKA 597 (799)
T ss_pred hHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh----------hhhhhhhhhhhhc
Confidence 99999999887754 1112222222233334578888888888777652 0011100 0111111222222
Q ss_pred HHHhc--CCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 839 EMKQT--YWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV--------PAYRILIDHYIKAGRLEVALELHEEM 908 (997)
Q Consensus 839 ~m~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~ 908 (997)
.+.-. .....+.+++.+..-...+.+.+ +.-..+......|.. ..|...++.+.+.++.++|...+.++
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~-~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSA-GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhc-ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 22110 11111222332211111110000 000001111111221 23556667888999999999999999
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHhhccCC
Q 001911 909 TSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQ--LSYSICHTDI 985 (997)
Q Consensus 909 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~--~~~~~~~~~~ 985 (997)
.+..|. ....|...+..+...|++++|.+.|..+.. +.|+ +.+...|+.+|.+.|+-.-|.+ ++..++..|.
T Consensus 677 ~~~~~l---~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 677 SKIDPL---SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred Hhcchh---hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 888764 778888888899999999999999999999 8897 7899999999999998776666 7776665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-09 Score=107.36 Aligned_cols=228 Identities=16% Similarity=0.155 Sum_probs=155.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 001911 594 LIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN 673 (997)
Q Consensus 594 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 673 (997)
|..-|...|-+|.|+.+|..+.+.+ .--......|+..|-+..+|++|.++-+++...+..+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-----------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-----------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-----------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 4445556666666666666665432 11223445566667777777777777776666553333
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 674 N----IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTE 749 (997)
Q Consensus 674 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 749 (997)
. ..|.-|...+....+.+.|..++.+..+.+++ .+..-..+.+.....|+++.|.+.++.+.+.+..--..+...
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 2 23556666667778899999999999888654 444555677888899999999999999998764444567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 001911 750 MIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCA--- 826 (997)
Q Consensus 750 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~--- 826 (997)
|..+|.+.|+.++...++.++.+.... ...-..+...-....-.+.|..++.+-+.+ +|+...+..++..-..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhcccc
Confidence 899999999999999999998886333 333344444333344455666665555554 6999999988886653
Q ss_pred cCCHHHHHHHHHHHHhc
Q 001911 827 SGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 827 ~g~~~~A~~~~~~m~~~ 843 (997)
.|...+.+..+..|...
T Consensus 331 eg~~k~sL~~lr~mvge 347 (389)
T COG2956 331 EGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccchhhhHHHHHHHHHH
Confidence 45677777788887653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9e-07 Score=99.72 Aligned_cols=196 Identities=9% Similarity=-0.029 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCchhHHHHHH
Q 001911 200 GKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFS-MDGFTLGCFAY 278 (997)
Q Consensus 200 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~ 278 (997)
..+|..|+..|+..-+...|.++|++..+.. ..+......+...+++...+++|..+.-...+.... .-...|--..-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4579999999998889999999999988754 344667778888999999999998883333222110 00111112233
Q ss_pred HHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH--HHHHhcCChh
Q 001911 279 SLCKAGRWKEALELIEK-EEFVP-DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILL--CGCLRKRQLG 354 (997)
Q Consensus 279 ~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll--~~~~~~g~~~ 354 (997)
.|-..+++..|..-|+. .+..| |...|..+..+|.+.|++..|+++|.+.... .|+.. |...- ...|..|++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~-y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSK-YGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhH-HHHHHHHHHHHHhhhHH
Confidence 45667888888888876 44455 7889999999999999999999999988775 45432 22221 2335789999
Q ss_pred HHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 355 RCKRVLSMMITEG------CYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMR 399 (997)
Q Consensus 355 ~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (997)
+|...++...... ..--..++-.+...+.-.|-...|.+.++.-+
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999988887541 11123333333344444455555555555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-08 Score=102.38 Aligned_cols=305 Identities=14% Similarity=0.052 Sum_probs=185.9
Q ss_pred CCCCceeHHHHHHHHHh--cCChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 001911 635 KEPNVYTYGALIDGLCK--VHKVREAHDLLDAMSV-VGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYT 711 (997)
Q Consensus 635 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 711 (997)
.+|+.......+.+++. .++...|...+-.+.. .-++.|+.....+.+.+...|+.++|+..|++....+ |+..+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhh
Confidence 34444444445555443 4555555555444433 2346678889999999999999999999999988763 33322
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 001911 712 -YGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790 (997)
Q Consensus 712 -~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 790 (997)
.....-.+.+.|+++....+...+.... +-....|-.-+..+....+++.|+.+-++.++.... +...|-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHH
Confidence 1122233457788888777777766432 233444544555566678999999999998875322 4555555556778
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 791 KVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 791 ~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
..|+.++|.-.|++.+.. .| +...|..|+.+|...|++.||...-+...... +
T Consensus 346 ~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~----------------------- 399 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-Q----------------------- 399 (564)
T ss_pred hccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-h-----------------------
Confidence 899999999999998875 66 68999999999999999999988777654321 0
Q ss_pred HHHhccCCCCCChhhHHHHH-HHH-HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 870 VNEMGKTDSVPIVPAYRILI-DHY-IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 870 ~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+..++..++ ..+ ..----++|..++++.+...|+ -..+.+.++..|...|+++.++.++++.+.
T Consensus 400 ----------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~---Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 400 ----------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI---YTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred ----------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc---cHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 1111222221 111 1112234555555555555443 334444444445555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 948 KDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 948 ~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
..||....++|++.....+.+++|...|...+..+
T Consensus 467 --~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 467 --IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred --hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34555555555555555555555555555444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-09 Score=108.08 Aligned_cols=286 Identities=13% Similarity=0.092 Sum_probs=191.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARN 539 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 539 (997)
..|+|..|.+++.+-.+.+-. ....|..-..+.-..|+.+.+-..+.++-+.-..++...+-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 469999999999998777633 3345666667777889999999999998887445567777788888899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHH
Q 001911 540 WFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIV-------TFTALIDGHCKAGDIERACRIYA 612 (997)
Q Consensus 540 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~ 612 (997)
-++++.+.+.. ++........+|.+.|++.+...++..|.+.|.-.+.. +|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999988765 77788899999999999999999999999988665543 34444444433444444334444
Q ss_pred HHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001911 613 RMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDE 692 (997)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 692 (997)
..... ...++..-.+++.-+..+|+.++|.++..+..+.+..|+. .. .-.+.+-++...
T Consensus 254 ~~pr~-----------------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~ 312 (400)
T COG3071 254 NQPRK-----------------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEP 312 (400)
T ss_pred hccHH-----------------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchH
Confidence 43222 1333444555666666677777777777666666544441 11 123345556555
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 693 AQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMME 771 (997)
Q Consensus 693 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 771 (997)
-++..++-.+..+. ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+..++..
T Consensus 313 l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 313 LIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55555555544322 3455666666666666666666666655553 4666666666666666666666666666554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-06 Score=92.99 Aligned_cols=298 Identities=14% Similarity=0.093 Sum_probs=158.8
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN---NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN----------- 706 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------- 706 (997)
.|..+...|-..|+++.|..+|++.....++.- ..+|..-...=.+..+++.|+++.+.....--.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 355666666667777777777776665443221 233444444445556666666666655432100
Q ss_pred ------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-
Q 001911 707 ------PNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV- 779 (997)
Q Consensus 707 ------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 779 (997)
-+...|...++..-..|-++....+++++++..+. ++.........+-...-++++.+++++-+..=..|+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 02234555555555677778888888888776542 2222222222233445567777777665443223343
Q ss_pred HHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCH-HHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhHH
Q 001911 780 VTYTAMIDGFGK---VGKVDKCLELLRQMSSKGCAPNF-VTYR-VLINHCCASGLLDEAHNLLEEMKQTYWPT-HVAGYR 853 (997)
Q Consensus 780 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~-~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~ 853 (997)
..|+..+.-+.+ ..+.+.|..+|++.++ |++|.. .|.. .....=.+.|.-..|+.++++.....-+. ....|+
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myn 626 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYN 626 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 245554443332 2457888888888887 566642 2222 22222235677788888888765432111 122333
Q ss_pred HHHHhHhHh--HHHHHHHHHHhccCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Q 001911 854 KVIEGFSRE--FIVSLGLVNEMGKTDSVPIVP---AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES 928 (997)
Q Consensus 854 ~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 928 (997)
..|+.-... ....-+++++..+. -|+.. +..-.++.-.+.|..+.|..+|.-..+..+. ..+...|..--.-
T Consensus 627 i~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP-r~~~~fW~twk~F 703 (835)
T KOG2047|consen 627 IYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP-RVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC-cCChHHHHHHHHH
Confidence 333322211 11112333333322 35443 2333456677889999999999988776432 3466677765555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 001911 929 LSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~ 947 (997)
-.+.|+-+ .+++|++
T Consensus 704 EvrHGned----T~keMLR 718 (835)
T KOG2047|consen 704 EVRHGNED----TYKEMLR 718 (835)
T ss_pred HHhcCCHH----HHHHHHH
Confidence 56778833 4555555
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-07 Score=99.88 Aligned_cols=569 Identities=17% Similarity=0.162 Sum_probs=302.0
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001911 284 GRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMM 363 (997)
Q Consensus 284 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 363 (997)
.++.+|..+|-+.. ++ ..-|..|-...++++|+.+-+. .|.+.-...-.+-+.++...|+-+.|-++-..
T Consensus 545 kkfk~ae~ifleqn---~t---e~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s- 614 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN---AT---EEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKES- 614 (1636)
T ss_pred hhhhHHHHHHHhcc---cH---HHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhccc-
Confidence 47888888876521 11 2346667777788888887653 22121122223345555667777666543211
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcC
Q 001911 364 ITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAG 443 (997)
Q Consensus 364 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g 443 (997)
.| ---+.|+.|.+.|....|......=.. +..|.....-+-.++. +.+++++|-.+|+.+.+
T Consensus 615 --dg------d~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali------k~elydkagdlfeki~d-- 676 (1636)
T KOG3616|consen 615 --DG------DGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI------KGELYDKAGDLFEKIHD-- 676 (1636)
T ss_pred --cC------ccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH------hhHHHHhhhhHHHHhhC--
Confidence 11 123457888888888777665421111 1123322222222222 12446666666654321
Q ss_pred ccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001911 444 VVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYS-KVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYT 522 (997)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 522 (997)
+...+.++-+-..+-+|.++-+-. ++..+++.. .-...+...|+++.|+..|-+.. ...
T Consensus 677 -------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~ 736 (1636)
T KOG3616|consen 677 -------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLI 736 (1636)
T ss_pred -------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHH
Confidence 112233333333344444433322 111122111 11223344556666665554432 122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 001911 523 ILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAG 602 (997)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 602 (997)
..+.+......+.+|+.+++.+..+. .....|..+...|...|+++.|.++|.+. ..++-.|.+|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 34555666778888888888887653 23345667778888888888888887553 23455678888888
Q ss_pred CHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001911 603 DIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALID 682 (997)
Q Consensus 603 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 682 (997)
+++.|.++-.+... .......|-+-..-+-+.|++.+|.+++-.+. .|+ ..|.
T Consensus 806 kw~da~kla~e~~~------------------~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiq 858 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG------------------PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQ 858 (1636)
T ss_pred cHHHHHHHHHHhcC------------------chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHH
Confidence 88888888776643 23445556666666777788888888776553 454 3456
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 683 GFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEE 762 (997)
Q Consensus 683 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 762 (997)
.|-+.|..+..+++.++-.-. .-..|...+..-+...|++..|..-|-+.- -|..-+++|-..+.+++
T Consensus 859 mydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 859 MYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWED 926 (1636)
T ss_pred HHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHH
Confidence 777888888777776654322 122355566677777888888877664432 24555666767777777
Q ss_pred HHHHHHHHHHCCCCCCHH-----HH------HHHHHHHhccCCHHHH-------------HHHHHHHHhCCCCCCHHHHH
Q 001911 763 AYKVMLMMEEKGCYPNVV-----TY------TAMIDGFGKVGKVDKC-------------LELLRQMSSKGCAPNFVTYR 818 (997)
Q Consensus 763 A~~~~~~m~~~g~~p~~~-----~~------~~li~~~~~~g~~~~A-------------~~l~~~m~~~g~~p~~~~~~ 818 (997)
|.++-+.- |-. |.. .| .+.++.+-++|-.+.| .++-+-..+. -.| .+..
T Consensus 927 ayriakte---gg~-n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~--~vhl 999 (1636)
T KOG3616|consen 927 AYRIAKTE---GGA-NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMG--EVHL 999 (1636)
T ss_pred HHHHHhcc---ccc-cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCc--cchh
Confidence 76654321 110 111 11 0112223334444443 3333322221 122 2233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
.+..-+...|++++|-+.+-+..+.. .-.+..+..+-..|..+++. .|-.|.. -+.++.+.++|
T Consensus 1000 k~a~~ledegk~edaskhyveaikln-tynitwcqavpsrfd~e~ir----------~gnkpe~-----av~mfi~dndw 1063 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLN-TYNITWCQAVPSRFDAEFIR----------AGNKPEE-----AVEMFIHDNDW 1063 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhcc-cccchhhhcccchhhHHHHH----------cCCChHH-----HHHHhhhcccH
Confidence 44555678899999987777665432 11111111111111111111 1223322 33567788889
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
..|.++.+.-.. ... ..++.--+..-...|++-+|..++-++- .||. ..+-|.+.|.|.+|+.+.+
T Consensus 1064 a~aervae~h~~---~~l--~dv~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1064 AAAERVAEAHCE---DLL--ADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred HHHHHHHHhhCh---hhh--HHHHhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHH
Confidence 888887664432 111 2223323333345577777777654432 4763 2344667888888888876
Q ss_pred HhhccCCcc
Q 001911 979 SICHTDINW 987 (997)
Q Consensus 979 ~~~~~~~~~ 987 (997)
.-+......
T Consensus 1130 dylp~q~a~ 1138 (1636)
T KOG3616|consen 1130 DYLPHQAAA 1138 (1636)
T ss_pred hhChhHHHH
Confidence 554444333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-06 Score=94.56 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=91.9
Q ss_pred CHHHHHHHHH--HHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-C--------CC
Q 001911 164 TPPVYNALVE--IMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDF-G--------YK 232 (997)
Q Consensus 164 ~~~~~~~l~~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-g--------~~ 232 (997)
|..+-.+|++ .|...|+.+.|..-++-|++. .+|..+.+.|.+..+.+-|.-++..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555543 345567777777666666532 36999999999999988888887776532 1 11
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 233 PTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGL 312 (997)
Q Consensus 233 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~ 312 (997)
|+ .+=..+.-.....|.+++|..+|++-.+.+ .+=..|...|.+++|.++-+....-.=-.||..-..-+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 21 111222222346777888888888766543 34446667788888888777532222233555555556
Q ss_pred HccCChHHHHHHHHHH
Q 001911 313 CEASLFEEAMDLLNRM 328 (997)
Q Consensus 313 ~~~g~~~~A~~~~~~m 328 (997)
-..++.+.|++.|++-
T Consensus 869 ear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKA 884 (1416)
T ss_pred HhhccHHHHHHHHHhc
Confidence 6667777777777753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-08 Score=99.06 Aligned_cols=272 Identities=14% Similarity=0.099 Sum_probs=129.9
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
+.|+.....+.+++...|+.++|...|++....+ +-+........-.+.+.|+.+....+...+....- -....|..-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhh
Confidence 4455555555555555566666655555554332 11111222222223445555555555544443310 112222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKV 795 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 795 (997)
.......++++.|+.+-++.++.. +.+...+-.-...+...|+.++|.-.|+..+... +-+...|..|+..|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 333344555566665555555432 2233333333445555566666666666555431 12455566666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 796 DKCLELLRQMSSKGCAPNFVTYRVLI-NHCC-ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
.+|.-+-+..... +.-+..+...+. ..|. ...--++|.+++++....
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~------------------------------ 433 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI------------------------------ 433 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc------------------------------
Confidence 6665555544432 122333333331 1111 222235555555554332
Q ss_pred ccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 874 GKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 874 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
.|+ .++.+.++..+...|..++++.++++.+...| |...++.|+......+.+.+|...|..+++ +.|
T Consensus 434 -----~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~----D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP 502 (564)
T KOG1174|consen 434 -----NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP----DVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDP 502 (564)
T ss_pred -----CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc----ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCc
Confidence 233 23444555555566666666666666555432 555555566666556666666666666555 445
Q ss_pred C
Q 001911 953 E 953 (997)
Q Consensus 953 ~ 953 (997)
.
T Consensus 503 ~ 503 (564)
T KOG1174|consen 503 K 503 (564)
T ss_pred c
Confidence 3
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-08 Score=98.49 Aligned_cols=445 Identities=10% Similarity=0.081 Sum_probs=240.3
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
+....++..|+.+++--...+-.....+-..+..++.+.|++++|...+..+.+.. .++...+..|..++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34568889999988877655433222333445566778899999999999887754 45667777777777778999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGN 617 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 617 (997)
..+-....+ ++-.-..|++...+.++-++-..+.+.+... ...-.++.......-.+.+|++++.++...
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887665432 4445556666677778877777766665432 233445566666667889999999998764
Q ss_pred cCCCchhHHHHHhccCCCCCCceeHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 618 AEISDVDIYFRVLDNNCKEPNVYTYGALI-DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMV 696 (997)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 696 (997)
.|+....|..+ -+|.+..-++-+.++++-....- +.++...|.......+.=+-..|..-
T Consensus 181 ------------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 181 ------------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred ------------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHH
Confidence 34444444443 36788888888888888777652 44556666555544444333344444
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 697 FSKMLEHGCNPNVYTYGSLIDRLFKD-----KRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMME 771 (997)
Q Consensus 697 ~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 771 (997)
.+.+.+.+-.. | -.+.-++++ .+-+.|++++-.+.+. -|. .--.|+-.|.+++++.+|..+.+.+.
T Consensus 242 ~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 242 KKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred HHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC
Confidence 44444443211 1 122333333 2446677776665543 222 22334555777788888887776653
Q ss_pred HCCCCCCHHHHHHHHHH-Hh----ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001911 772 EKGCYPNVVTYTAMIDG-FG----KVGKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYW 845 (997)
Q Consensus 772 ~~g~~p~~~~~~~li~~-~~----~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 845 (997)
- ..|-......+..+ ++ ......-|.+.|+-.-+.+..-| ...--++...+.-..++++.+.+++.+..-..
T Consensus 313 P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 313 P--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred C--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 22323222222221 11 11223445555544433333222 11223344445555567777777777655433
Q ss_pred CCchhhHHHHHHh-HhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHH
Q 001911 846 PTHVAGYRKVIEG-FSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLL 924 (997)
Q Consensus 846 ~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 924 (997)
..+...+.-.-.. -...+.+|.+++..+....+.........|+.+|.+.|+.+-|-+++-++-... ..-...-.
T Consensus 391 NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~----e~fsLLql 466 (557)
T KOG3785|consen 391 NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS----ERFSLLQL 466 (557)
T ss_pred CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch----hHHHHHHH
Confidence 3333222221111 112333444444444322222222222344455555565555555444433211 01122223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 001911 925 LIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 925 l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++..|.+.+++=-|-+.+..+-.
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHc
Confidence 44455555554444444444444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-09 Score=113.16 Aligned_cols=201 Identities=14% Similarity=0.078 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
....+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35567777888888888888888888887653 2356677778888888899999999998888763 235667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 902 (997)
.+...|++++|...+++...... .......+..++..+...|++++|.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL--------------------------------YPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc--------------------------------cccchHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999999988765210 0112335667888999999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
+.++++....|. +...+..++..+...|++++|...++++.+. .| +...+..++.++...|+.++|..+.+.+.
T Consensus 156 ~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 156 KYLTRALQIDPQ---RPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHhCcC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999887664 5678888999999999999999999999884 45 46777888999999999999999888765
Q ss_pred c
Q 001911 982 H 982 (997)
Q Consensus 982 ~ 982 (997)
.
T Consensus 231 ~ 231 (234)
T TIGR02521 231 K 231 (234)
T ss_pred h
Confidence 4
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-06 Score=91.53 Aligned_cols=543 Identities=16% Similarity=0.152 Sum_probs=270.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCC
Q 001911 206 LIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGR 285 (997)
Q Consensus 206 li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 285 (997)
-|+.|.+.|++-.|...-..=. -+..|......+..++.+..-++.|-.+|+.+..- .-.+..|-+..-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgda 689 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccH
Confidence 4566777777766655332111 12334444455555565655566666666655321 111222222223
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001911 286 WKEALELIEKEEFVPDTVLYT-KMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMI 364 (997)
Q Consensus 286 ~~~A~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (997)
+..|.++-+- .++..+++.. .-..-+.+.|.++.|+.-|-+... ....+.+.....++.+|..+++.+.
T Consensus 690 f~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniq 759 (1636)
T KOG3616|consen 690 FGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQ 759 (1636)
T ss_pred HHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhh
Confidence 4444443221 1111222211 122334455666666665544322 1233455566777888888888776
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCc
Q 001911 365 TEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGV 444 (997)
Q Consensus 365 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 444 (997)
... .....|..+.+.|...|+++.|.++|-+.-. ++.
T Consensus 760 dqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~~---------~~d-------------------------------- 796 (1636)
T KOG3616|consen 760 DQK--TASGYYGEIADHYANKGDFEIAEELFTEADL---------FKD-------------------------------- 796 (1636)
T ss_pred hhc--cccccchHHHHHhccchhHHHHHHHHHhcch---------hHH--------------------------------
Confidence 653 2233466677888888888888888754321 111
Q ss_pred cccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001911 445 VLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTIL 524 (997)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 524 (997)
.+..|.+.|+|+.|.++-++... .......|..-..-+-..|++.+|.+++-.+. .|+ ..
T Consensus 797 ---------ai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~a 856 (1636)
T KOG3616|consen 797 ---------AIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KA 856 (1636)
T ss_pred ---------HHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HH
Confidence 22335577888888887766532 23334455555555666777877777765443 233 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 525 IDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDI 604 (997)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 604 (997)
|.+|-+.|..+..+++.++-... .-..|...+..-+-..|+...|..-|-+.- .|.+-+++|-..+-+
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELW 924 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhH
Confidence 66777888888877777664322 122345556666777788777776664332 245556666666667
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001911 605 ERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGF 684 (997)
Q Consensus 605 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 684 (997)
++|.++-+.--. .| .-..++-..++.=--+.|.+++++.- ....-++.-
T Consensus 925 ~dayriaktegg--------------------~n--~~k~v~flwaksiggdaavkllnk~g---------ll~~~id~a 973 (1636)
T KOG3616|consen 925 EDAYRIAKTEGG--------------------AN--AEKHVAFLWAKSIGGDAAVKLLNKHG---------LLEAAIDFA 973 (1636)
T ss_pred HHHHHHHhcccc--------------------cc--HHHHHHHHHHHhhCcHHHHHHHHhhh---------hHHHHhhhh
Confidence 666655432111 01 11111222333323344555544321 122334444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcC-
Q 001911 685 CKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMI-----DGLIKVG- 758 (997)
Q Consensus 685 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g- 758 (997)
+..+.++-|.++-+-..+... |.+. ..+...+...|++++|-+-+-+.++.+. -..||...+ .-+.+.|
T Consensus 974 ~d~~afd~afdlari~~k~k~-~~vh--lk~a~~ledegk~edaskhyveaiklnt--ynitwcqavpsrfd~e~ir~gn 1048 (1636)
T KOG3616|consen 974 ADNCAFDFAFDLARIAAKDKM-GEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGN 1048 (1636)
T ss_pred hcccchhhHHHHHHHhhhccC-ccch--hHHhhhhhhccchhhhhHhhHHHhhccc--ccchhhhcccchhhHHHHHcCC
Confidence 555666666665555444321 2222 1223334556777777666655554321 011111110 1122333
Q ss_pred CHHHHHHHHHH---------HHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001911 759 KTEEAYKVMLM---------MEEKGCYPN--VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCAS 827 (997)
Q Consensus 759 ~~~~A~~~~~~---------m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~ 827 (997)
++++|..+|-. ..+. -.|+ +..|..-.++....|++.+|..++-+.. +|+.. ++-|...
T Consensus 1049 kpe~av~mfi~dndwa~aervae~-h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i~-----l~yf~e~ 1118 (1636)
T KOG3616|consen 1049 KPEEAVEMFIHDNDWAAAERVAEA-HCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDIA-----LNYFIEA 1118 (1636)
T ss_pred ChHHHHHHhhhcccHHHHHHHHHh-hChhhhHHHHhhhhhccccccchhhhhhheeecC----CCchH-----HHHHHHh
Confidence 44444444421 1111 1112 2234444555566788888877655443 46643 4455667
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 828 GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEE 907 (997)
Q Consensus 828 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 907 (997)
+.|.+|+.+.+.. .|..... +-..+. .+...+| ...+..+..-+.-..++|+|.+|...+-+
T Consensus 1119 ~lw~dalri~kdy----lp~q~a~---iqeeye----------k~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lk 1180 (1636)
T KOG3616|consen 1119 ELWPDALRIAKDY----LPHQAAA---IQEEYE----------KEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLK 1180 (1636)
T ss_pred ccChHHHHHHHhh----ChhHHHH---HHHHHH----------HHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhh
Confidence 7788877766432 2222111 000110 0111122 12334455555666677777777776665
Q ss_pred H
Q 001911 908 M 908 (997)
Q Consensus 908 ~ 908 (997)
+
T Consensus 1181 i 1181 (1636)
T KOG3616|consen 1181 I 1181 (1636)
T ss_pred h
Confidence 5
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-08 Score=106.45 Aligned_cols=305 Identities=17% Similarity=0.140 Sum_probs=188.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 001911 456 QCLCGAGKYEKAYNVIREMMSKGFIPDTS-TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKA--- 531 (997)
Q Consensus 456 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--- 531 (997)
..+...|++++|++.++.-... .+|.. ........+.+.|+.++|..+++.+++.++. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 3456889999999999886554 45544 4566678888999999999999999998643 566666666666333
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 532 --GLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKP-SQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERAC 608 (997)
Q Consensus 532 --g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 608 (997)
.+.+....+++++...- |...+...+.-.+.....+ ..+...+..+...|+++ +|+.+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 25778889999887763 3333333333333332223 34566677778888543 4555555565444444455
Q ss_pred HHHHHHHhccCCCchhHHHHHhccCCCCCCce--eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 001911 609 RIYARMKGNAEISDVDIYFRVLDNNCKEPNVY--TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK 686 (997)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 686 (997)
+++............- .........+|... ++.-+...|-..|++++|++.+++.+... +..+..|..-...+-+
T Consensus 164 ~l~~~~~~~l~~~~~~--~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSF--SNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHhhcccCCC--CCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 5555544321100000 00000001234432 33455666777888888888888777764 3335667777777788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHHcC
Q 001911 687 VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV------IY--TEMIDGLIKVG 758 (997)
Q Consensus 687 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g 758 (997)
.|++.+|.+.++........ |...-+-.+..+.+.|+.++|.+++....+.+..|-.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888777654 66666667777778888888888877776654322211 11 22345666667
Q ss_pred CHHHHHHHHHHHHH
Q 001911 759 KTEEAYKVMLMMEE 772 (997)
Q Consensus 759 ~~~~A~~~~~~m~~ 772 (997)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 76666666655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-10 Score=110.93 Aligned_cols=236 Identities=14% Similarity=0.060 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 754 (997)
.--+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|-.+|.+..+.+.|+.++.+-++. ++-|+.....+...+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33456777777777777777777777766 345556666777777777777777777777664 233444445556666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAH 834 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 834 (997)
-..++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++++.|+ -+...|+.+.-+|...+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 67777777777777776652 22555555666667777777777777777777763 35666777777777777777777
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 001911 835 NLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTSFS 912 (997)
Q Consensus 835 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 912 (997)
.-|++....- ..|+ .+.|+.|+......|+..-|.+.|+-++..+
T Consensus 379 ~sf~RAlsta---------------------------------t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 379 PSFQRALSTA---------------------------------TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHhhc---------------------------------cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 7776655431 1233 3467777777777777777777777777666
Q ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 913 SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 913 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++ +...+++|+-.-.+.|++++|..+++.+.. +.|+
T Consensus 426 ~~---h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 426 AQ---HGEALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred cc---hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 54 667777777766777777777777777766 5665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-09 Score=125.64 Aligned_cols=252 Identities=12% Similarity=0.027 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 690 LDEAQMVFSKMLEHGCNPNVYTYGSLIDRLF---------KDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT 760 (997)
Q Consensus 690 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 760 (997)
.++|...|++..+..+. +...|..+..++. ..+++++|...+++.++.+ +.+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 35555556555554322 2333433333332 2234677777777777654 34566677777777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 761 EEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 761 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
++|...|+++.+.+.. +...+..+...+...|++++|+..+++..+. .|+ ...+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 8888888877775322 4556667777777788888888888887775 343 22333344455667778888877777
Q ss_pred HHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc
Q 001911 840 MKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS 918 (997)
Q Consensus 840 m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 918 (997)
..... .|+.+ .+..++.+|...|+.++|.+.++++....|. +
T Consensus 432 ~l~~~----------------------------------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~---~ 474 (553)
T PRK12370 432 LRSQH----------------------------------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT---G 474 (553)
T ss_pred HHHhc----------------------------------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch---h
Confidence 65432 23322 4566777777788888888888777655443 4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKD-GSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
......+...|...| ++|...++++.+.. ..|.. ...+...|.-.|+-+.+..+ +++.+.+-.|.
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 540 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWF 540 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence 455555555556556 46666666665521 12221 12255555556665555555 66666555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-06 Score=94.54 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=119.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCH
Q 001911 208 HKCCRNGFWNVALEELGRLKDFGYKPT-QAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRW 286 (997)
Q Consensus 208 ~~y~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 286 (997)
..|.+ .+...|+..|-+..+. .|+ ...|..|...|+..-+...|...|+...+.+ ..+..........|+....+
T Consensus 467 ~~~~r-K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 467 LGCMR-KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHhh-hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccH
Confidence 34444 3466777777666553 233 4567777777777767777888888777665 45666777778888888888
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001911 287 KEALELIEKE----EFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSM 362 (997)
Q Consensus 287 ~~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (997)
++|..+.-.. +...-...|-.+.-.|.+.++...|+.-|+...... +-|...+..+..+|...|.+..|..+|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 8887764321 111112233333445667778888888887776553 34566777888888888888888888877
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 363 MITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRK 400 (997)
Q Consensus 363 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (997)
..... +.+...---...+-|-.|.+.+|+..+.....
T Consensus 622 As~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 622 ASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 76653 22222222334445677888888887777653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-10 Score=108.48 Aligned_cols=232 Identities=9% Similarity=-0.038 Sum_probs=194.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 001911 712 YGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK 791 (997)
Q Consensus 712 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 791 (997)
-+.+..+|.+.|-+.+|.+.++..++. .|-+.||-.|-..|.+..+...|+.++.+-.+. ++-|+.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356788999999999999999998876 467778888999999999999999999998875 33355555567778888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 871 (997)
.++.++|.++|+...+.. ..+.+...++...|.-.++.+-|+.+++++.+-+
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--------------------------- 354 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--------------------------- 354 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc---------------------------
Confidence 999999999999998862 3367888888889999999999999999998765
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001911 872 EMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS 951 (997)
Q Consensus 872 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 951 (997)
..+...|..++-+|.-.+++|-++.-|++++..-.+......+|.+++......|++.-|.+.+.-++. -.
T Consensus 355 -------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d 425 (478)
T KOG1129|consen 355 -------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SD 425 (478)
T ss_pred -------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cC
Confidence 344567888999999999999999999998865333335678999999999999999999999999888 45
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 952 PE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 952 p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
|+ .++++.|+-.-.+.|+.++|..+++.....
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 76 789999999999999999999999876654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.6e-06 Score=88.18 Aligned_cols=582 Identities=13% Similarity=0.128 Sum_probs=290.9
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCC
Q 001911 153 LWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKD-FGY 231 (997)
Q Consensus 153 ~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~g~ 231 (997)
+|+... +..++...|..+-+++-+ +.-++.+|+ ++|-.-.....++|+...-..+|++.+. ..+
T Consensus 70 R~~~vk-~~~~T~~~~~~vn~c~er------~lv~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv 134 (835)
T KOG2047|consen 70 RRAQVK-HLCPTDPAYESVNNCFER------CLVFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPV 134 (835)
T ss_pred HHHHhh-ccCCCChHHHHHHHHHHH------HHHHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCch
Confidence 455443 556667778777777643 333444443 3577777777788888888888888654 233
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 232 KPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISG 311 (997)
Q Consensus 232 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~ 311 (997)
......|...+.-.-..|-++.+.++|+.-++.. | ..-.-.|..+++.+++++|.+.+...- ++...
T Consensus 135 tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~eaa~~la~vl--n~d~f------- 201 (835)
T KOG2047|consen 135 TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLDEAAQRLATVL--NQDEF------- 201 (835)
T ss_pred HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchHHHHHHHHHhc--Cchhh-------
Confidence 3334567777777777788888889998887643 2 236677788888888888888776521 11111
Q ss_pred HHccCChHH-HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCH
Q 001911 312 LCEASLFEE-AMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPS--PRIFHSLIHAYCRSGDY 388 (997)
Q Consensus 312 ~~~~g~~~~-A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~ 388 (997)
+.+.|+... -...+..+... .|+.+. .-+ ...++..+... -+| ...|++|.+.|.+.|.+
T Consensus 202 ~sk~gkSn~qlw~elcdlis~--~p~~~~----------sln---vdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 202 VSKKGKSNHQLWLELCDLISQ--NPDKVQ----------SLN---VDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hhhcccchhhHHHHHHHHHHh--Ccchhc----------ccC---HHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhh
Confidence 111221110 01111111111 122110 001 11122222222 222 34577777777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHH
Q 001911 389 SYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAY 468 (997)
Q Consensus 389 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (997)
+.|.++|++.... .-.+.-++.+...|..-. +......-++ .....-+.. ..-+++-..
T Consensus 265 ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE--------E~~~~~~me~-a~~~~~n~e----------d~~dl~~~~ 323 (835)
T KOG2047|consen 265 EKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE--------ESCVAAKMEL-ADEESGNEE----------DDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHh--heehhhHHHHHHHHHHHH--------HHHHHHHHhh-hhhcccChh----------hhhhHHHHH
Confidence 8888777776643 123334444444442110 0000000000 000000000 011222233
Q ss_pred HHHHHHHHCC-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHc
Q 001911 469 NVIREMMSKG-----------FIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIP------DVYTYTILIDNFCKA 531 (997)
Q Consensus 469 ~ll~~m~~~g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~~~~~ 531 (997)
.-|+.+.... -+-++..|..-+.. ..|+..+-...+.++.+. +.| -...|..+...|-..
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 3333333321 01122233322222 234444555555554432 111 123455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 532 GLIEQARNWFDEMVKEGCDPN---VVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERAC 608 (997)
Q Consensus 532 g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 608 (997)
|+++.|..+|++..+...+-- ..+|..-...=.+..+++.|+++++..... |.... ..+...+..-++
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~- 471 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQA- 471 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHH-
Confidence 666666666655554322211 122322333333344445555544443321 11111 011111111111
Q ss_pred HHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 001911 609 RIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVG 688 (997)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 688 (997)
.+ ..+...|...++..-..|-++....+++++....+.....+.| ....+-.+.
T Consensus 472 rl-------------------------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~ 525 (835)
T KOG2047|consen 472 RL-------------------------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHK 525 (835)
T ss_pred HH-------------------------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhH
Confidence 01 1233456666666666778888888888888766433222222 222334556
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHH
Q 001911 689 KLDEAQMVFSKMLEHGCNPNVY-TYGSLIDRLFK---DKRLDLALKVISKMLEDSYAPNVVIYTEMID--GLIKVGKTEE 762 (997)
Q Consensus 689 ~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~ 762 (997)
-++++.+++++-+..=.-|++. .|++.+..+.+ ..+++.|..+|++.++ |++|...-+--|+. .--+.|-...
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6788888887766654345543 45554444433 3568889999999888 66655432222221 1223577778
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHH
Q 001911 763 AYKVMLMMEEKGCYPN--VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFV---TYRVLINHCCASGLLDEAHNLL 837 (997)
Q Consensus 763 A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~ 837 (997)
|..+++++... +++. ...||..|.--...=-+.....+|++..+. -|+.. ......+.=++.|..+.|..++
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 88888886654 4432 346777765433222233455677777765 45432 2334455567788888888888
Q ss_pred HHHHh
Q 001911 838 EEMKQ 842 (997)
Q Consensus 838 ~~m~~ 842 (997)
.--.+
T Consensus 682 a~~sq 686 (835)
T KOG2047|consen 682 AHGSQ 686 (835)
T ss_pred Hhhhh
Confidence 66544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-09 Score=109.18 Aligned_cols=200 Identities=15% Similarity=0.059 Sum_probs=131.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 709 VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 709 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3445556666666677777777766666543 33455666666677777777777777777766532 245566666677
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSL 867 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~ 867 (997)
+...|++++|.+.+++.......| ....+..+..++...|++++|...+++.....
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------- 165 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID----------------------- 165 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 777777777777777776642222 34556667777777888888888887765532
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 868 GLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 868 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+.+...+..++..+...|++++|.+.++++....|. +...+..++..+...|+.++|..+.+.+.+
T Consensus 166 -----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 166 -----------PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ---TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -----------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 112345666777788888888888888877765432 555566667777777888888777776655
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=90.23 Aligned_cols=50 Identities=42% Similarity=0.788 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 001911 300 PDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLR 349 (997)
Q Consensus 300 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (997)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-09 Score=122.26 Aligned_cols=250 Identities=16% Similarity=0.014 Sum_probs=183.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 001911 653 HKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK---------VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK 723 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 723 (997)
+.+++|.+.|++..+.. +.+...|..+..+|.. .+++++|...++++.+.++. +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 34689999999998875 4455666666655442 24589999999999998755 7778888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
++++|...|++.++.+ +.+...+..+...+...|++++|...++++.+.... +...+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999875 445677888999999999999999999999986443 23333444555777899999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-
Q 001911 804 QMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI- 881 (997)
Q Consensus 804 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~- 881 (997)
++.... .| +...+..+..++...|++++|...++++.... |+
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-----------------------------------~~~ 474 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-----------------------------------ITG 474 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----------------------------------chh
Confidence 988753 35 45567788889999999999999998875432 32
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
....+.+...|...| ++|...++.+.+.... .......+...+.-.|+.+.+... +++.+.
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQR---IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH---hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 334566667777777 4788777776653211 111122245556667887777665 777663
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-09 Score=114.53 Aligned_cols=241 Identities=19% Similarity=0.164 Sum_probs=160.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-C-CHH
Q 001911 715 LIDRLFKDKRLDLALKVISKMLED-----S-YAPNV-VIYTEMIDGLIKVGKTEEAYKVMLMMEEK-----GCY-P-NVV 780 (997)
Q Consensus 715 li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p-~~~ 780 (997)
+...|...|+++.|..+++..++. | ..|.. ...+.+...|...+++++|..+|+++..- |-. | -..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444444444444444444444322 1 01222 23334667788888888888888887642 221 1 234
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh---C--CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 781 TYTAMIDGFGKVGKVDKCLELLRQMSS---K--GCAP-N-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 781 ~~~~li~~~~~~g~~~~A~~l~~~m~~---~--g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
+++.|..+|.+.|++++|..++++..+ + |..+ . ...++.++..|+..+++++|..++++....+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~--------- 355 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY--------- 355 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---------
Confidence 667777788888888888877777554 1 2222 2 3456678888999999999999998765421
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCC----CC-CCcchhhHHHHHH
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFS----SN-SAASRNSTLLLIE 927 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~~~l~~ 927 (997)
....... .|. ..++..|+..|...|++++|.+++++++... .. ..--...++.++.
T Consensus 356 -----------------~~~~g~~-~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 356 -----------------LDAPGED-NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred -----------------Hhhcccc-chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 1111001 112 2378899999999999999999999987642 11 1122456777899
Q ss_pred HHHhcCCHHHHHHHHHHHHH----cC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 928 SLSLARKIDKAFELYVDMIR----KD-GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 928 ~~~~~g~~~~A~~~~~~~~~----~~-~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.|...+++++|.++|.+.+. -| ..|+ ..+|..|+.+|.+.|++++|.++.+.+..
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99899999988888887654 11 2344 46889999999999999999999988763
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-08 Score=110.99 Aligned_cols=247 Identities=17% Similarity=0.118 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEH-----GC-NPNVYT-YGSLIDRLFKDKRLDLALKVISKMLED-----SY- 740 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~- 740 (997)
..+...+...|...|+++.|+.+++..++. |. .|.+.+ .+.+...|...+++.+|..+|++++.- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555778888888888888888877664 21 133332 334677888899999999999988642 21
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhC---C
Q 001911 741 -APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-----GC-YPNV-VTYTAMIDGFGKVGKVDKCLELLRQMSSK---G 809 (997)
Q Consensus 741 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g 809 (997)
+.-..+++.|...|.+.|++++|...+++..+- |. .|.+ ..++.++..+...+++++|..++++..+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 112457788888999999999998888876541 22 2222 23556677788999999999999887652 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhh
Q 001911 810 CAPN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPA 884 (997)
Q Consensus 810 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~ 884 (997)
+.++ ..++..|...|...|++++|.++++++.+.. ++..... .+. ...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~--------------------------~~~~~~~-~~~~~~~ 411 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL--------------------------RELLGKK-DYGVGKP 411 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH--------------------------HhcccCc-ChhhhHH
Confidence 2232 5689999999999999999999999876531 1111111 122 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTS----FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++.|+..|.+.+++++|.++|.+... ..|+.+.-..+|..|+..|...|++++|+++.+.+..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77899999999999999999988654 3455555678899999999999999999999988863
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-05 Score=87.13 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=96.1
Q ss_pred CCHHHHHHHHH-----hCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhcc----------
Q 001911 130 LSESLVVNVLN-----LIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNE---------- 194 (997)
Q Consensus 130 l~~~~~~~vl~-----~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~---------- 194 (997)
.++.+--.+|+ ..++.+.|.+-.+ +-.+-.+|..|.+++.+.++.+.|.-.+-.|...
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~-------~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQ-------FIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHH-------HHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 44555555554 3456666644333 2345678999999999999998888777666432
Q ss_pred -CchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhH
Q 001911 195 -DKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTL 273 (997)
Q Consensus 195 -~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 273 (997)
+++-. =..+...-.+.|+.++|+.+|++-++. ..|=..|...|.+++|.++-+.--+..+ ..||
T Consensus 797 q~~~e~---eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 797 QNGEED---EAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred hCCcch---hhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 11111 112222334679999999999998753 2333456788999999887664322111 2366
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC
Q 001911 274 GCFAYSLCKAGRWKEALELIEKEEF 298 (997)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~~ 298 (997)
.-...-+-..++.+.|++.|++.+.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCC
Confidence 6677777788999999999998653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-08 Score=108.32 Aligned_cols=291 Identities=17% Similarity=0.179 Sum_probs=208.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-----
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK----- 721 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----- 721 (997)
..+...|++++|++.+..-... +......+......+.+.|+.++|..+|..+++.++. +..-|..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 4567889999999999876543 2333455667788899999999999999999999643 44444555555422
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT-EEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLE 800 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 800 (997)
....+....+++++...- |......-+.-.+.....+ ..+..++..+..+|+++ +|+.|-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 235778888898887653 3333332222222222233 34666777888888763 46666666665555555566
Q ss_pred HHHHHHhC----CC----------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH
Q 001911 801 LLRQMSSK----GC----------APNF--VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI 864 (997)
Q Consensus 801 l~~~m~~~----g~----------~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 864 (997)
++...... |- .|.. .++..+...|...|++++|++++++..+.
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------------------- 223 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------------------- 223 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------------------
Confidence 66665432 11 2333 45677788899999999999999988763
Q ss_pred HHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 865 VSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 865 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
.|+ +..|...+.+|.+.|++++|.+.++.+...++. |..+-...+.-+.+.|++++|.+...
T Consensus 224 --------------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~---DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 224 --------------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA---DRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred --------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh---hHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 465 558889999999999999999999999998764 66666666777788999999999999
Q ss_pred HHHHcCCCC--CH----HHHH--HHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 944 DMIRKDGSP--EL----STFV--HLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 944 ~~~~~~~~p--~~----~~~~--~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
...+.+..| |. ..|+ --+.+|.+.|++..|++.+..+..
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 998877555 21 2454 578899999999999999887765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.1e-11 Score=85.85 Aligned_cols=50 Identities=40% Similarity=0.873 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 001911 370 PSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICG 419 (997)
Q Consensus 370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 419 (997)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|.++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-06 Score=90.09 Aligned_cols=188 Identities=17% Similarity=0.218 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh-ccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG-FG-KVGKVDKCLELLRQMSSKGCAP--NFVTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~-~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 833 (997)
+..+.+.++...... ..|... +.+++.. .. +.....+|.+++....+. .| ...+...++......|+++.|
T Consensus 321 nk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 321 NKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred hhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 555666665554432 234433 3334333 32 233577888888888775 45 356677777888899999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcC--
Q 001911 834 HNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSF-- 911 (997)
Q Consensus 834 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 911 (997)
.+++..... -|.+. +.++ +..| .+...+...|.+.++.+-|..++.++...
T Consensus 396 ~~il~~~~~-~~~ss---------------------~~~~---~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 396 LEILSLFLE-SWKSS---------------------ILEA---KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred HHHHHHHhh-hhhhh---------------------hhhh---ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 999985431 11100 0000 1123 23445666777777777777777766542
Q ss_pred --CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 912 --SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 912 --~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
.+.+..-...+..++.--.+.|+-++|...++++.+ ..| |..+...|+-+|++.. -+.|..+-+.+
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 222111222233333333456999999999999998 556 5888888998888876 46676666544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-06 Score=90.68 Aligned_cols=474 Identities=13% Similarity=0.134 Sum_probs=239.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCchhHHHHHHHHH
Q 001911 203 LNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGF-SMDGFTLGCFAYSLC 281 (997)
Q Consensus 203 ~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~ 281 (997)
..+=+.-+...|++++|++.-.++...+ +.+...+..=+-++...+.+++|..+.+ ..+. ..+.+-+.--..+..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchhhhcchhhHHHHHHHH
Confidence 3344566788899999999999999866 5556777777778889999999984433 2221 111111122233445
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCChhHHHHH
Q 001911 282 KAGRWKEALELIEKEEFVP-DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVV-TFRILLCGCLRKRQLGRCKRV 359 (997)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~ 359 (997)
+.++.++|+..++. ..+ +..+...-...+.+.|++++|+++|+.+.+.+...... .-..++.+- .+...
T Consensus 91 rlnk~Dealk~~~~--~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG--LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV 161 (652)
T ss_pred HcccHHHHHHHHhc--ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH
Confidence 78999999999984 333 33466666778899999999999999998775322111 111111110 01111
Q ss_pred HHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHH
Q 001911 360 LSMMITEGCYP--SPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYA 437 (997)
Q Consensus 360 ~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~ 437 (997)
..+......| +-..+......+...|++.+|+++++...+.|.. .++. ++.. .+.++.-+..
T Consensus 162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~~-~d~~-eEeie~el~~-- 225 (652)
T KOG2376|consen 162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLED-EDTN-EEEIEEELNP-- 225 (652)
T ss_pred -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhcc-cccc-hhhHHHHHHH--
Confidence 1122222222 2222233445667889999999999887442100 0100 0000 0000000000
Q ss_pred HHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---hcCCHH--HHHHHHHHHHHC
Q 001911 438 EMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLC---DASEAE--KAFLLFQEMKRN 512 (997)
Q Consensus 438 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~---~~g~~~--~A~~~~~~~~~~ 512 (997)
.--.+...+...|+-++|.+++...+... .+|........+.+. ...++- .++..++....
T Consensus 226 ------------IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~- 291 (652)
T KOG2376|consen 226 ------------IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF- 291 (652)
T ss_pred ------------HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHH-
Confidence 01124555667889999999888888775 445432222221111 111111 11111111110
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 001911 513 GLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTY-TALIHAYLKARKPSQANELFETMLSKGCIPNIVTF 591 (997)
Q Consensus 513 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 591 (997)
...+.++..|..=.. ..... +.++..| .+..+.+.++...+.. ..|....-
T Consensus 292 -------------------~l~~~~l~~Ls~~qk-----~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~~~ 343 (652)
T KOG2376|consen 292 -------------------KLAEFLLSKLSKKQK-----QAIYRNNALLALF--TNKMDQVRELSASLPG--MSPESLFP 343 (652)
T ss_pred -------------------HhHHHHHHHHHHHHH-----HHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchHHHH
Confidence 001111111111111 11122 2233333 2334444444433322 23333332
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHH-------
Q 001911 592 TALIDGH-CKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLD------- 663 (997)
Q Consensus 592 ~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------- 663 (997)
+.+..+. ++.....+|.+++....+.. ......+.-.++......|+++.|.+++.
T Consensus 344 ~ll~~~t~~~~~~~~ka~e~L~~~~~~~----------------p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 344 ILLQEATKVREKKHKKAIELLLQFADGH----------------PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhccC----------------CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 3333332 22334666666666665432 11123344555666777888888888888
Q ss_pred -HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHh----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 664 -AMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHG--CNPNVYT----YGSLIDRLFKDKRLDLALKVISKML 736 (997)
Q Consensus 664 -~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~~~ 736 (997)
.+.+.+..|-.+ .++...+.+.++-+.|..++...+..- -.+.... +.-+...-.+.|+.++|..+++++.
T Consensus 408 ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 408 SSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 555554444443 456666777777666777666665420 0111122 2222233345566666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 737 EDSYAPNVVIYTEMIDGLIKVGKTEEAYKVM 767 (997)
Q Consensus 737 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 767 (997)
+.. ++|..+...++.+|++. +.+.|..+-
T Consensus 486 k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 486 KFN-PNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 532 45556666666666642 344554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-08 Score=107.90 Aligned_cols=240 Identities=11% Similarity=-0.039 Sum_probs=153.0
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 686 KVGKLDEAQMVFSKMLEHGC-NPN--VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEE 762 (997)
Q Consensus 686 ~~g~~~~A~~~~~~m~~~g~-~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 762 (997)
..+..+.++.-+.+++.... .|+ ...|..+...+...|+.++|...|++.++.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34567777888877775432 222 3456667777888888888888888888764 3456788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 763 AYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 763 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
|...|++..+.... +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++...
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888888875322 4567777777788888888888888888875 45432222222234456778888888865433
Q ss_pred cCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCC-Ccc
Q 001911 843 TYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS---FSSNS-AAS 918 (997)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~-~~~ 918 (997)
.. .|+. |. ....+...|++.++ +.++.+.+ ..+.. +..
T Consensus 194 ~~----------------------------------~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~ 235 (296)
T PRK11189 194 KL----------------------------------DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERL 235 (296)
T ss_pred hC----------------------------------Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHH
Confidence 11 1221 22 22333345555444 34444432 11110 113
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCC
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-E-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~y~~~g~ 969 (997)
..+|..++..+.+.|++++|+..|+++++ ..| | ++.-..++......++
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~--~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALA--NNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHhh
Confidence 46788899999999999999999999998 444 5 4444455555444333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-08 Score=102.70 Aligned_cols=228 Identities=17% Similarity=0.056 Sum_probs=161.0
Q ss_pred HHhcCChHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 001911 649 LCKVHKVREAHDLLDAMSVVG-CEPN--NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRL 725 (997)
Q Consensus 649 ~~~~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 725 (997)
....+..+.+...+.+++... ..|+ ...|..+...|...|+.++|...|++.++..+. +...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCH
Confidence 444567788888888888643 1222 456778888899999999999999999998654 678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001911 726 DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 805 (997)
++|...|++.++.. +.+...|..+...+...|++++|.+.|++..+.. |+..........+...++.++|.+.|.+.
T Consensus 115 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999999998764 3356788888888999999999999999998863 33222222222344578899999999776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-Chhh
Q 001911 806 SSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPA 884 (997)
Q Consensus 806 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~ 884 (997)
.... .|+...+ .......|+..++ ..++.+.+.. ...+ ...| ...+
T Consensus 192 ~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~-~~~~---------------------------~l~~~~~ea 238 (296)
T PRK11189 192 YEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGA-TDNT---------------------------ELAERLCET 238 (296)
T ss_pred HhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcC-CCcH---------------------------HHHHHHHHH
Confidence 6432 3332222 2333345666554 3555544321 0000 0012 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
|..++..+.+.|++++|+..|+++.+.+|
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999998764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.2e-08 Score=91.23 Aligned_cols=196 Identities=17% Similarity=0.080 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHC 824 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~ 824 (997)
+...|.-+|...|+...|.+-+++..+.... +..+|..+...|.+.|+.+.|.+.|++.+.. .| +..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 4455667788888888888888888886433 5667888888888888888888888888875 55 567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001911 825 CASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 825 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
|..|++++|...|++..... . ......+|..++.+..++|+.+.|.+.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P--~------------------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~ 161 (250)
T COG3063 114 CAQGRPEEAMQQFERALADP--A------------------------------YGEPSDTLENLGLCALKAGQFDQAEEY 161 (250)
T ss_pred HhCCChHHHHHHHHHHHhCC--C------------------------------CCCcchhhhhhHHHHhhcCCchhHHHH
Confidence 88888899888888876531 0 001123677788888888999999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
+++.++.+|+ .+.....+.....+.|++-.|...+++....+. +..+.....+++-.+.|+-+-|-++=..+
T Consensus 162 l~raL~~dp~---~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 162 LKRALELDPQ---FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhCcC---CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9998888876 667777888888888999889888888877653 77777888888888888877766654443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9e-07 Score=93.75 Aligned_cols=104 Identities=21% Similarity=0.193 Sum_probs=63.1
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 001911 456 QCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPD-VYTYTILIDNFCKAGLI 534 (997)
Q Consensus 456 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 534 (997)
.+.+..|+++.|+..|-+.+... +++.+.|+.-..+|...|++++|.+=-.+-.+. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45566677777777777766653 345666666677777777777766655444443 344 45666666666666777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 535 EQARNWFDEMVKEGCDPNVVTYTALIHAY 563 (997)
Q Consensus 535 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 563 (997)
++|+.-|.+=++.... +...++-+..++
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 7777777666654322 444444444444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-07 Score=89.04 Aligned_cols=209 Identities=13% Similarity=0.116 Sum_probs=138.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKV 795 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 795 (997)
+..+...|+...|+.....+++-. +-|...+..-..+|...|.+..|+.-++........ +..++--+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH
Confidence 344566788888888888888753 456677777788888889998888877776654322 555555566777888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhcc
Q 001911 796 DKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGK 875 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 875 (997)
+.++.-.+++++. .||......... .+.+..+.++.|.+.. - .+.+..++..-+....
T Consensus 240 ~~sL~~iRECLKl--dpdHK~Cf~~YK------klkKv~K~les~e~~i-----------e---~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 240 ENSLKEIRECLKL--DPDHKLCFPFYK------KLKKVVKSLESAEQAI-----------E---EKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHHHHHcc--CcchhhHHHHHH------HHHHHHHHHHHHHHHH-----------h---hhhHHHHHHHHHHHHh
Confidence 9998888888875 676543322222 2333344444443310 0 0111122222222221
Q ss_pred CC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 876 TD---SVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 876 ~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
+. ..-....+..+..+|...|++-+|++..+++++..|. |..++.--+.+|.....|+.|+.-|+++.+ .+|
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~---dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~ 372 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD---DVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNE 372 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCc
Confidence 11 1111234556667888899999999999999988764 788888888899888999999999999998 667
Q ss_pred C
Q 001911 953 E 953 (997)
Q Consensus 953 ~ 953 (997)
+
T Consensus 373 s 373 (504)
T KOG0624|consen 373 S 373 (504)
T ss_pred c
Confidence 5
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-07 Score=95.48 Aligned_cols=353 Identities=15% Similarity=0.094 Sum_probs=238.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-H
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN-N 674 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~ 674 (997)
++.+..|+++.|+.+|.+..... ++|.+.|..-..+|++.|++++|++=-.+-.+. .|+ .
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-----------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~ 70 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-----------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWA 70 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-----------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchh
Confidence 45678899999999999998764 678889999999999999999998766666554 454 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-------------------------------
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK------------------------------- 723 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------------------------------- 723 (997)
..|+....++.-.|++++|+.-|.+-++..+. +...++.+..++....
T Consensus 71 kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 71 KGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred hHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence 67888999999999999999999988876533 4455555555541110
Q ss_pred --------------------CHHHHHHHHHHHH-----hC-------CCCC---------C-------------HHHHHH
Q 001911 724 --------------------RLDLALKVISKML-----ED-------SYAP---------N-------------VVIYTE 749 (997)
Q Consensus 724 --------------------~~~~A~~~~~~~~-----~~-------~~~~---------~-------------~~~~~~ 749 (997)
++..|.-.+.... .. +..| . ..-...
T Consensus 150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 0001111000000 00 0011 0 011223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--C----HHHHHHHHHH
Q 001911 750 MIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP--N----FVTYRVLINH 823 (997)
Q Consensus 750 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~~~~~l~~~ 823 (997)
+.+..-+..++..|.+-+....+.. -+..-++....+|...|.+.++...-....+.|-.- + ...+..+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4445555566677777777666653 255556666677888888888777777666654221 1 1122234456
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 902 (997)
|.+.++++.|..++.+....+..++... . .+..+.+.+..+...-. .|... -...-++.+.+.|++.+|+
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls------~-lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS------K-LKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH------H-HHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHH
Confidence 7778889999999988766543322111 1 11222222222222111 22221 2334578899999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
..|.++++..|. |...|.+.+.+|.+.|.+..|++-.+..++ +.|+ ...|..-+.++....+|++|.+.|.+.+
T Consensus 379 ~~YteAIkr~P~---Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 379 KHYTEAIKRDPE---DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHhcCCc---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876 999999999999999999999999999999 6787 7789999999999999999999999877
Q ss_pred ccC
Q 001911 982 HTD 984 (997)
Q Consensus 982 ~~~ 984 (997)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-08 Score=105.43 Aligned_cols=223 Identities=14% Similarity=0.064 Sum_probs=161.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLD 831 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~ 831 (997)
-+.+.|++.+|.-.|+..+...+. +...|--|.......++-..|+..++++++. .| |......|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 355667777777777777765333 5566666666666677777777777777764 45 5667777777777777777
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHH------HhHh--HhHHHHHHHHHHh-ccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001911 832 EAHNLLEEMKQTYWPTHVAGYRKVI------EGFS--REFIVSLGLVNEM-GKTDSVPIVPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 832 ~A~~~~~~m~~~~~~~~~~~~~~~~------~~~~--~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 902 (997)
+|++.++.......+-.-......- +++. .......++|.++ ...+..++......|+.+|.-.|+++.|+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777777765432110000000000 0111 1122233444444 34455577788899999999999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
..|+.++...|+ |...|+.|+..+....+.++|+..|.++++ +.|. +-+.+.|+-.|.-.|.|+||.+.+=.++
T Consensus 451 Dcf~~AL~v~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPN---DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999998887 999999999999999999999999999999 8998 6789999999999999999999987665
Q ss_pred cc
Q 001911 982 HT 983 (997)
Q Consensus 982 ~~ 983 (997)
.+
T Consensus 526 ~m 527 (579)
T KOG1125|consen 526 SM 527 (579)
T ss_pred Hh
Confidence 54
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.9e-07 Score=98.13 Aligned_cols=319 Identities=11% Similarity=-0.021 Sum_probs=202.4
Q ss_pred CceeHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 638 NVYTYGALIDGLCKVHKVREAHDLLDAMSVVGC-EPNNI-VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
....|..+...+...|+.+.+.+.+........ .++.. ........+...|++++|...+++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 344566666777778888887777776654331 22321 2222334567789999999999999987543 4434432
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 001911 716 IDRLFK----DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK 791 (997)
Q Consensus 716 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 791 (997)
...+.. .+..+.+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 222322 4555555555554211 222233455566778889999999999999999874 3356778888899999
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGC-APNF--VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
.|++++|+.++++...... .|+. ..|..+...+...|++++|..++++........
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~--------------------- 219 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES--------------------- 219 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC---------------------
Confidence 9999999999999887521 2332 346678899999999999999999975321100
Q ss_pred HHHHhccCCCCCChh-h--HHHHHHHHHhcCCHHHHHHH---HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 869 LVNEMGKTDSVPIVP-A--YRILIDHYIKAGRLEVALEL---HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELY 942 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~-~--~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 942 (997)
+... . ...+...+...|..+.+.+. ........++ ..........+.++...|+.++|...+
T Consensus 220 -----------~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 220 -----------DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred -----------ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 0000 0 00223333444433333332 1111111111 112233335667778889999999999
Q ss_pred HHHHHcCCC-------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchhhhh
Q 001911 943 VDMIRKDGS-------P-ELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEEER 993 (997)
Q Consensus 943 ~~~~~~~~~-------p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 993 (997)
+.+...... . ........+.++...|++++|...+...........++.-|
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq 346 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQ 346 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 888663211 1 24566788889999999999999999998887777776544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-07 Score=88.94 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 001911 717 DRLFKDKRLDLALKVISKMLED-SYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKV 795 (997)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 795 (997)
..+.+.++.+.|.+.+-.|--. ....|++|...+.-.-. .+++-+..+-+.-+.+..+- ...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHH
Confidence 3456778888888877776422 23456677666543322 24454555545555554343 356777777788888888
Q ss_pred HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 796 DKCLELLRQMSSKGCA-PNFVTYRVLINHCCASGLLDEAHNLLEEM 840 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 840 (997)
+-|.+++.+-...... .+...|+.|=..-...-..++|.+=++.+
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8887776553322111 12333332222223445667776666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.6e-07 Score=84.94 Aligned_cols=199 Identities=14% Similarity=0.030 Sum_probs=168.2
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLF 720 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 720 (997)
+...|.-+|...|+...|.+-+++.++.+ +.+..+|..+...|.+.|..+.|.+.|++.++..+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34556668999999999999999999887 667788999999999999999999999999998755 6778888888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 001911 721 KDKRLDLALKVISKMLEDSYA-PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCL 799 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 799 (997)
..|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|++..+.... .+.+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 999999999999999876322 23468889999999999999999999999987433 4556778888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 800 ELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 800 ~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
.+++.....|. ++..+....|..-...|+.+.+.++=.++...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999988764 88888888899999999999888877766554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-07 Score=100.02 Aligned_cols=248 Identities=15% Similarity=0.088 Sum_probs=153.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 685 CKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAY 764 (997)
Q Consensus 685 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 764 (997)
.+.|++.+|.-.|+..++..+. +...|.-|.......++-..|+..+.+.++.. +.|......|...|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 4445555555555555555433 44555555555555555555555555555543 234445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 001911 765 KVMLMMEEKGCYPNVVTYTAMI-----------DGFGKVGKVDKCLELLRQMSS-KGCAPNFVTYRVLINHCCASGLLDE 832 (997)
Q Consensus 765 ~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~ 832 (997)
+.|..-+...++ |..+. +.+.....+....++|-++.. .+..+|......|.-.|--.|++++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 555555432110 00000 111112223344455555544 4445678888888888888888888
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 001911 833 AHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSF 911 (997)
Q Consensus 833 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 911 (997)
|...|+...+.. |+ ...|+-|+..++...+.++|+..|+++++.
T Consensus 449 aiDcf~~AL~v~-----------------------------------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 449 AVDCFEAALQVK-----------------------------------PNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred HHHHHHHHHhcC-----------------------------------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 888888887643 44 447888888888888889999999998888
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 912 SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDG---SP------ELSTFVHLIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 912 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p------~~~~~~~l~~~y~~~g~~~eA~~~~ 977 (997)
.|+ -..+...|+-+|...|.|++|.+.|-.++..-- .+ +-.+|..|-.++...++.+-+.+..
T Consensus 494 qP~---yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 494 QPG---YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred CCC---eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 876 666777788888888999988888887765221 11 1247777777777777766554443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-06 Score=81.40 Aligned_cols=236 Identities=16% Similarity=0.078 Sum_probs=166.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHH-HHHHH
Q 001911 168 YNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNAL-IQVFL 246 (997)
Q Consensus 168 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 246 (997)
+.+.+..+.+..++..|.+++..-.+..+.. ...++.|..+|....+|..|-++++++.. ..|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~-rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRS-RAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 3444555667777888888777665554432 34689999999999999999999999876 34554444322 35677
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCchhHHHHH----HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 001911 247 RADRLDTAYLVYREMLDAGFSMDGFTLGCFA----YSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAM 322 (997)
Q Consensus 247 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 322 (997)
+.+.+..|.++...|... ++ ..+-.+ ......|++..+..+.++.+.+-+..+.+-..-.+.+.|++++|+
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 888999999999888653 22 222222 234456888889999998655556666666666788999999999
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-------------CCH---------------HH
Q 001911 323 DLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCY-------------PSP---------------RI 374 (997)
Q Consensus 323 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-------------~~~---------------~~ 374 (997)
+-|+...+.+---....|+..+.-| +.|+++.|.+...+++++|+. ||+ ..
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 9999998766555678899888665 789999999999999988742 111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHH
Q 001911 375 FHSLIHAYCRSGDYSYAYKLLSKMRK-CGFQPGYVVYNI 412 (997)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ 412 (997)
+|.-...+.+.|+++.|.+.+-+|.- ..-..|++|..-
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 33333445678999999998888852 223445555543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-05 Score=78.71 Aligned_cols=316 Identities=16% Similarity=0.137 Sum_probs=201.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-
Q 001911 517 DVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTAL---IHAYLKARKPSQANELFETMLSKGCIPNIVTFT- 592 (997)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l---l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~- 592 (997)
++.-.--+...+...|++..|+.-|...++. |+..|.++ ...|...|+..-|+.-+...++. +||...-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444455677777788888888888888765 33344433 44677778888888877777765 67654322
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 001911 593 ALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEP 672 (997)
Q Consensus 593 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 672 (997)
.-...+.+.|.+++|..-|+.+.... |+..+ ...++.+.- ..+++
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~------------------~s~~~---~~eaqskl~-------~~~e~------- 155 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE------------------PSNGL---VLEAQSKLA-------LIQEH------- 155 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC------------------CCcch---hHHHHHHHH-------hHHHH-------
Confidence 22345677888888888888777642 22111 111111110 11111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMID 752 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 752 (997)
......+..+...|+...|+.+...+++..+ -|...|..-..+|...|.+..|+.-++...+.. ..+...+-.+-.
T Consensus 156 --~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~ 231 (504)
T KOG0624|consen 156 --WVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQ 231 (504)
T ss_pred --HHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHH
Confidence 1112233345566777788888877777642 366667777777778888888877777666543 234444445556
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---------HHHHhccCCHHHHHHHHHHHHhCCCCCC---HHH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGCYPNVVT----YTAM---------IDGFGKVGKVDKCLELLRQMSSKGCAPN---FVT 816 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~ 816 (997)
.+...|+.+.++...++-... .||... |..| +......++|.++++-.+...+...... ...
T Consensus 232 L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~ 309 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNG 309 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeee
Confidence 666677777777777766653 444332 1111 1223456788888888888887632211 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhc
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKA 895 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 895 (997)
+..+-.++...|++-+|+....++.+. .|+ ..++..-+.+|.-.
T Consensus 310 ~r~~c~C~~~d~~~~eAiqqC~evL~~-----------------------------------d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 310 FRVLCTCYREDEQFGEAIQQCKEVLDI-----------------------------------DPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred eheeeecccccCCHHHHHHHHHHHHhc-----------------------------------CchHHHHHHHHHHHHhhh
Confidence 445556777889999999999888764 355 66888888999999
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 001911 896 GRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~ 914 (997)
..+++|+.-|+++.+.++.
T Consensus 355 E~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHHhcCcc
Confidence 9999999999999998653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-07 Score=96.91 Aligned_cols=253 Identities=16% Similarity=0.131 Sum_probs=167.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 001911 648 GLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDL 727 (997)
Q Consensus 648 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 727 (997)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445788888886555 222221223445556778888889877544 3333332 5666666666655544456666
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 728 ALKVISKMLEDSYA-PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 728 A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
++.-+++....... .+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666555443322 23333333335566789999999888653 266777778888999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh
Q 001911 807 SKGCAPNFVTYRVLINHCC----ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV 882 (997)
Q Consensus 807 ~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 882 (997)
+. ..| .+...+..++. -.+.+.+|..+|+++.+++ .++.
T Consensus 159 ~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~----------------------------------~~t~ 201 (290)
T PF04733_consen 159 QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF----------------------------------GSTP 201 (290)
T ss_dssp CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS------------------------------------SH
T ss_pred hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc----------------------------------CCCH
Confidence 75 344 33333444333 2347899999999987754 3556
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCC
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI-DKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~ 953 (997)
..++.++.++...|++++|.++++++...+|+ ++.+..+++-+....|+. +.+.++++++.. ..|+
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~ 268 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPN 268 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCC
Confidence 67888999999999999999999999988876 888888888888888887 778888888887 5676
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-06 Score=89.57 Aligned_cols=216 Identities=13% Similarity=0.040 Sum_probs=148.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH--HHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG-KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKV--DKC 798 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A 798 (997)
.++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++.+...+ +..+|+.-...+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 456667777777776643 234455666656666666 567888888888776444 555666555555555653 677
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCC
Q 001911 799 LELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTD 877 (997)
Q Consensus 799 ~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 877 (997)
+.+++++++. .| |..+|.....++...|++++|+..++++.+..
T Consensus 128 l~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------------------------------- 172 (320)
T PLN02789 128 LEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------------------------------- 172 (320)
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---------------------------------
Confidence 8888888875 45 67888888888888888888888888887654
Q ss_pred CCCChhhHHHHHHHHHhc---C----CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 001911 878 SVPIVPAYRILIDHYIKA---G----RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----RKIDKAFELYVDMI 946 (997)
Q Consensus 878 ~~p~~~~~~~l~~~~~~~---g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~ 946 (997)
..+..+|+..+.++.+. | ..+++++...+++...|. |..+|+.+...+... ++..+|.+...++.
T Consensus 173 -~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~---N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 173 -VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR---NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred -CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC---CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 12333555555444433 2 235678888888888776 889999998888773 45577888888877
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcC------------------CHHHHHHHHHHh
Q 001911 947 RKDGSPE-LSTFVHLIKGLIRVN------------------KWEEALQLSYSI 980 (997)
Q Consensus 947 ~~~~~p~-~~~~~~l~~~y~~~g------------------~~~eA~~~~~~~ 980 (997)
. ..|+ ..++..|+++|++.. ..++|.++++.+
T Consensus 249 ~--~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 249 S--KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred c--ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 7 4564 778889999998642 236788888776
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-05 Score=88.35 Aligned_cols=198 Identities=11% Similarity=0.031 Sum_probs=103.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH--HhHHHHHHHHH
Q 001911 644 ALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN-PNV--YTYGSLIDRLF 720 (997)
Q Consensus 644 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~ 720 (997)
.+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... |+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445566666666666666666554 344555566666666667777777666666654321 121 23445566666
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHcCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHhcc
Q 001911 721 KDKRLDLALKVISKMLEDSY-APNVVIY-T--EMIDGLIKVGKTEEAYKV--MLMMEEKGC--YPNVVTYTAMIDGFGKV 792 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m~~~g~--~p~~~~~~~li~~~~~~ 792 (997)
..|++++|..++++...... .+..... + .++.-+...|....+..+ +........ ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 67777777777766643221 1111111 1 122222233332222222 111111100 11112222455667788
Q ss_pred CCHHHHHHHHHHHHhCCCC-------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 793 GKVDKCLELLRQMSSKGCA-------P-NFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 793 g~~~~A~~l~~~m~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
|+.++|..+++.+...... . .........-++...|++++|...+.+...
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888887653211 0 122233334456688999999988887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-05 Score=95.70 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=102.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHH
Q 001911 682 DGFCKVGKLDEAQMVFSKMLEHGCNPNV----YTYGSLIDRLFKDKRLDLALKVISKMLED----SY-APNVVIYTEMID 752 (997)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~ 752 (997)
..+...|++++|...++...+.-...+. ...+.+...+...|++++|...+++.... |. ......+..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3455678888888888777653211121 23445555667788888888888777642 11 111234455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEK----GCY--P-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK--GCAP--NFVTYRVLI 821 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~~~~~l~ 821 (997)
.+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 777889999998888776542 211 1 2233445556677789999999888887652 1122 234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 001911 822 NHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~ 842 (997)
..+...|++++|...+++...
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777889999999998888754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-06 Score=90.61 Aligned_cols=171 Identities=12% Similarity=0.049 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
....+..++..+...|++++|...|+++... .|+ ..++..+..++...|++++|...++++.+... .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~------ 102 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-N------ 102 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-C------
Confidence 4556677777788888888888888888775 343 24667788888888888888888888876431 0
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCcchhhH--
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKA--------GRLEVALELHEEMTSFSSNSAASRNST-- 922 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~-- 922 (997)
.|. ..++..++.++... |++++|++.++++....|.........
T Consensus 103 -------------------------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 103 -------------------------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred -------------------------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 011 11345555665544 788889999998888776532111111
Q ss_pred ------------HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 923 ------------LLLIESLSLARKIDKAFELYVDMIRKDG-SPE-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 923 ------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..++..+...|++++|+..++++++..- .|. ..++..++.+|...|++++|..+++.+..
T Consensus 158 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 158 MDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2456777888999999999999998421 232 57899999999999999999999887754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=95.89 Aligned_cols=217 Identities=14% Similarity=0.122 Sum_probs=117.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 714 SLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 714 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
.+...+...|-...|..++++.. .|...+.+|+..|+..+|..+..+..++ +||+..|..+.+.....-
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 34444555555555555555432 3444455555555555555555554442 445555555555544444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 794 KVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
-+++|.++++....+ .-..+.....+.++++++.+.++.-.+.+
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n----------------------------- 515 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN----------------------------- 515 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-----------------------------
Confidence 455555555443321 11111122223455555555555433321
Q ss_pred ccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 874 GKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 874 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+-...+|..++.+..+.++++.|.+.|.......|+ +...|+++..+|.+.|+-.+|...++++.+-+ ..+
T Consensus 516 -----plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~ 586 (777)
T KOG1128|consen 516 -----PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQH 586 (777)
T ss_pred -----ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCC
Confidence 112345666666666677777777777776666665 66677777777777777777777777766633 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 954 LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 954 ~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
..+|....-...+.|.|++|++.+.++......
T Consensus 587 w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred CeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 445556666666667777777777666554433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-05 Score=95.46 Aligned_cols=385 Identities=11% Similarity=0.020 Sum_probs=226.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 001911 523 ILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAG 602 (997)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 602 (997)
.....+...|++.+|........... .-..............|+++.+...++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 33444556666666655443321100 0000111112233445777776666665422111112222334455566788
Q ss_pred CHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCC--ceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HH
Q 001911 603 DIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPN--VYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNN----IV 676 (997)
Q Consensus 603 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~ 676 (997)
++++|...+............ ...+. ......+...+...|++++|...+++....-...+. ..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNI----------ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred CHHHHHHHHHHHHHhccccCc----------ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 999998888877543210000 00111 111222334556789999999999988763212222 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CH
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEH----GC-NPNVYTYGSLIDRLFKDKRLDLALKVISKMLED----SYA--P-NV 744 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~ 744 (997)
.+.+...+...|++++|...+.+.... |. .+...++..+...+...|+++.|...+++..+. +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 566677778899999999999888753 11 111234556677788999999999998887642 211 1 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCC--CHHH
Q 001911 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GCYP--NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK--GCAP--NFVT 816 (997)
Q Consensus 745 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~~ 816 (997)
..+..+...+...|++++|...+.+.... ...+ ....+..+...+...|++++|.+.+.+.... .... ....
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 34555666777889999999999887653 1112 2334455666778899999999999887542 1111 1111
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 001911 817 Y--RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK 894 (997)
Q Consensus 817 ~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 894 (997)
. ...+..+...|+.+.|..++.......... . ......+..++.++..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~---~---------------------------~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN---N---------------------------HFLQGQWRNIARAQIL 703 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc---c---------------------------hhHHHHHHHHHHHHHH
Confidence 1 112244456789999988876643311000 0 0001123457788899
Q ss_pred cCCHHHHHHHHHHHhcCCC---CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 895 AGRLEVALELHEEMTSFSS---NSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
.|++++|...++++..... .......++..++.++...|+.++|...+.++++..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999875311 111123466778888899999999999999998853
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-05 Score=81.62 Aligned_cols=224 Identities=14% Similarity=0.019 Sum_probs=152.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--H
Q 001911 685 CKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK-RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT--E 761 (997)
Q Consensus 685 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~ 761 (997)
...++.++|+....++++..+. +..+|+.-...+...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 3456777888888888776543 4445555555555666 5788888888888764 34556677666566666653 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CH----HHHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG---LL----DEAH 834 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~----~~A~ 834 (997)
++..+++++.+...+ |..+|+....++.+.|+++++++.+.++++.+ .-|...|+....++.+.| .. +++.
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 778888888876554 77888888888888899999999999999864 225667777666665542 22 3444
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhc----CCHHHHHHHHHHHh
Q 001911 835 NLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKA----GRLEVALELHEEMT 909 (997)
Q Consensus 835 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----g~~~~A~~~~~~~~ 909 (997)
.+..++... .|+ ...|+.+..++... ++..+|.+.+.++.
T Consensus 204 ~y~~~aI~~-----------------------------------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 204 KYTIDAILA-----------------------------------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHh-----------------------------------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 444444332 243 45788888887773 45677989988887
Q ss_pred cCCCCCCcchhhHHHHHHHHHhcC------------------CHHHHHHHHHHHHHcCCCC
Q 001911 910 SFSSNSAASRNSTLLLIESLSLAR------------------KIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 910 ~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~~~~~p 952 (997)
...|. +..++..|+..|+... ..++|.++++.+.+ ..|
T Consensus 249 ~~~~~---s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~--~d~ 304 (320)
T PLN02789 249 SKDSN---HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV--ADP 304 (320)
T ss_pred cccCC---cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh--hCc
Confidence 76554 7788888888887642 24678888888743 455
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-06 Score=86.88 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY-P-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN----FVT 816 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~ 816 (997)
....+..++..+.+.|++++|...|+++...... | ...++..+...+...|++++|+..++++.+. .|+ ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 3445566666677777777777777777664211 1 1135566667777777777777777777765 232 124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 817 YRVLINHCCAS--------GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 817 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
+..+..++... |++++|.+.++++...+ |........+... ..+... . ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~------------~~~~~~---~-~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRM------------DYLRNR---L-AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHH------------HHHHHH---H-HHHHHHH
Confidence 44455555543 78899999999887653 3332222211110 000000 0 0112357
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+..|.+.|++++|+..++++.+..|+.+.....+..++.++.+.|++++|...++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 788999999999999999999887765556789999999999999999999999988773
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=90.96 Aligned_cols=249 Identities=14% Similarity=0.063 Sum_probs=162.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 683 GFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEE 762 (997)
Q Consensus 683 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 762 (997)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3455688888886665 222222223445566778888999877654 3333333 5666665555544433345555
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 763 AYKVMLMMEEKGCY-PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 763 A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
+..-+++....... .+..........+...|++++|++++.+. .+.......+.+|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555443333222 23333333334567889999999887542 467778888999999999999999999997
Q ss_pred hcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHH----HHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 001911 842 QTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILI----DHYIKAGRLEVALELHEEMTSFSSNSAA 917 (997)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 917 (997)
+.. .|. +...|+ +.+.-.+++.+|.-+|+++.+..+.
T Consensus 159 ~~~-----------------------------------eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~--- 199 (290)
T PF04733_consen 159 QID-----------------------------------EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS--- 199 (290)
T ss_dssp CCS-----------------------------------CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----
T ss_pred hcC-----------------------------------CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---
Confidence 632 222 222233 2222334799999999999887543
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHHHHhhcc
Q 001911 918 SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKW-EEALQLSYSICHT 983 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~-~eA~~~~~~~~~~ 983 (997)
++.+.+.++.+....|++++|.+.++++.+ ..|+ +.+...++-+..-.|+. +.+.+++.++...
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 778888899999999999999999999887 5574 78888999999999998 6677788777644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-06 Score=82.69 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=74.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 871 (997)
.++.++++..+++.++.. +.|...|..+...|...|++++|...+++..+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------------------------- 103 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------------------------- 103 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------
Confidence 555666666666666542 2256667777777777777777777776665532
Q ss_pred HhccCCCCCChhhHHHHHHH-HHhcCC--HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 872 EMGKTDSVPIVPAYRILIDH-YIKAGR--LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 872 ~~~~~~~~p~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+.+...+..++.+ +...|+ .++|.++++++.+.+|+ +..++..++..+...|++++|+..|+++++
T Consensus 104 -------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~---~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 104 -------GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN---EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred -------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1233455556664 355555 46777777777776655 666677777777777777777777777766
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0027 Score=72.14 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 712 YGSLIDRLFKDKRLD---LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 712 ~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
.+.|++.+-+.++.. +|+-+++.-.... +.|..+--.+|..|+-.|-+..|.+++..+.-+.+.-|..-|. +...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 445666666666654 3444444444332 2334444456677777777777777777776655555554443 2344
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 001911 789 FGKVGKVDKCLELLRQMSS 807 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~ 807 (997)
+...|++..+...++....
T Consensus 517 ~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHhcccchhHHHHHHHHHH
Confidence 5566777777777666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0027 Score=72.14 Aligned_cols=192 Identities=15% Similarity=0.150 Sum_probs=108.4
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
+.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+++..... .|+......+..+|.+-+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888777777655433 6777777778888888888888888887765 45667777777788887776554
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-Ch---------hHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHH
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKAR-KP---------SQANELFETMLSKG-CIPNIVTFTALIDGHCKAGDIER 606 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~---------~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~ 606 (997)
.+.--+|-+. .+-+...+-++++.+.+.. .. .-|.+.++.+.+.+ -.-+..-.......+-..|++++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 4443333332 2224444445555544331 11 12444444444433 11111112222333445666777
Q ss_pred HHHHHHH-HHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 001911 607 ACRIYAR-MKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVG 669 (997)
Q Consensus 607 A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 669 (997)
|..++.. ..+.. ..-+...-+.-++.+...+++.+..++-.++...|
T Consensus 209 al~~l~~~la~~l----------------~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 209 ALEFLAITLAEKL----------------TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhc----------------cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 7777632 22211 12222233345566666777777777777766665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.1e-08 Score=62.74 Aligned_cols=33 Identities=36% Similarity=0.760 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 001911 297 EFVPDTVLYTKMISGLCEASLFEEAMDLLNRMR 329 (997)
Q Consensus 297 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (997)
|+.||+++||+||.+||+.|++++|+++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 456777777777777777777777777777763
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-06 Score=79.25 Aligned_cols=122 Identities=12% Similarity=-0.033 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 800 ELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 800 ~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
.++++.++. .|+. +..+...+...|++++|...|+...... +
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------P 55 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ----------------------------------P 55 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------------C
Confidence 345555543 3443 4456777778888888888887776532 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
.+...|..++.++...|++++|+..|+++....|+ +...+..++.++...|++++|+..|+++++ ..|+ +..+.
T Consensus 56 ~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~ 130 (144)
T PRK15359 56 WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSE 130 (144)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHH
Confidence 34557777888888888888888888888887765 778888888888888888888888888888 6675 56666
Q ss_pred HHHHHH
Q 001911 959 HLIKGL 964 (997)
Q Consensus 959 ~l~~~y 964 (997)
.++.+.
T Consensus 131 ~~~~~~ 136 (144)
T PRK15359 131 IRQNAQ 136 (144)
T ss_pred HHHHHH
Confidence 665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-05 Score=93.39 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 775 CYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 775 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
...+...+..|.....+.|.+++|..+++.+.+. .|+ ......++.++.+.+++++|+..+++..+..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------- 150 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------- 150 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---------
Confidence 3446778888888888889999999999988885 674 6677788888888999999988888877642
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA 932 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 932 (997)
|+ ......++.++.+.|++++|+++|+++....|+ +..++..++.++...
T Consensus 151 --------------------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 151 --------------------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE---FENGYVGWAQSLTRR 201 (694)
T ss_pred --------------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHc
Confidence 54 446777888888899999999999998875543 678888888888888
Q ss_pred CCHHHHHHHHHHHHHc
Q 001911 933 RKIDKAFELYVDMIRK 948 (997)
Q Consensus 933 g~~~~A~~~~~~~~~~ 948 (997)
|+.++|...|+++++.
T Consensus 202 G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 202 GALWRARDVLQAGLDA 217 (694)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998874
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-05 Score=84.83 Aligned_cols=219 Identities=13% Similarity=0.076 Sum_probs=161.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001911 671 EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEM 750 (997)
Q Consensus 671 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (997)
+|-...-..+...+...|-...|..+|++.. .|.-+|.+|...|+..+|..+..+-.++ +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444566777788888888888887654 3556677888888888888888887773 6888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL 829 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 829 (997)
++......-+++|.++++..... .-..+.......++++++.+.|+.-.+. .| ...+|..+..+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhh
Confidence 88777666777888877765432 1112222234478888888888887764 44 67788888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 830 LDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEM 908 (997)
Q Consensus 830 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 908 (997)
++.|.+.|...... .|+ ...|+++..+|.+.|+..+|...++++
T Consensus 535 ~q~av~aF~rcvtL-----------------------------------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL-----------------------------------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred hHHHHHHHHHHhhc-----------------------------------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 88888888776542 355 447888888888888888888888888
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 909 TSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 909 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+.+- .+..+|.+.+....+.|.+++|++.|.++..
T Consensus 580 lKcn~---~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 580 LKCNY---QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCC---CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 87652 3667788888788888888888888888876
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-05 Score=76.02 Aligned_cols=158 Identities=14% Similarity=0.062 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001911 748 TEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCAS 827 (997)
Q Consensus 748 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~ 827 (997)
..+-..+...|+-+.+..+........ +-|....+.++....+.|++.+|+..+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445556666677777777766654432 2255555667777777788888888887777642 44777788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 828 GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEE 907 (997)
Q Consensus 828 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 907 (997)
|++++|...+.+..+.. ..+...+++|+..|.-.|+.+.|..++..
T Consensus 148 Gr~~~Ar~ay~qAl~L~----------------------------------~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 148 GRFDEARRAYRQALELA----------------------------------PNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred cChhHHHHHHHHHHHhc----------------------------------cCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 88888877777766532 11223566777777777888888888777
Q ss_pred HhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 908 MTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVD 944 (997)
Q Consensus 908 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 944 (997)
....++. +..+-..++......|++++|..+..+
T Consensus 194 a~l~~~a---d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 194 AYLSPAA---DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhCCCC---chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7766543 666666777777777887777766444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-07 Score=60.96 Aligned_cols=32 Identities=34% Similarity=0.860 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 367 GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKM 398 (997)
Q Consensus 367 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (997)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.6e-05 Score=71.06 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=76.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEKGCYPNVV-TYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLL 830 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 830 (997)
-+....|+.+.|...++++... + |... .-..-.-.+-..|++++|+++++.+++.+ +-|..++..-+-+.-..|+.
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 3344445555555555555443 2 2111 11111111334455555555555555542 12445555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
.+|++.+.+..+.+ ..|..+|..|..+|...|++++|.-.++++.-
T Consensus 137 l~aIk~ln~YL~~F----------------------------------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 137 LEAIKELNEYLDKF----------------------------------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHHh----------------------------------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 55555555544432 34445555566666666666666665655554
Q ss_pred CCCCCCcchhhHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 001911 911 FSSNSAASRNSTLLLIESLSLAR---KIDKAFELYVDMIR 947 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 947 (997)
..|. ++..+..++..+.-.| +++-|.++|++.++
T Consensus 183 ~~P~---n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQPF---NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4443 4444445555444332 35555555665555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=79.85 Aligned_cols=97 Identities=8% Similarity=-0.084 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+..++..+...|++++|.+.|+.+....|. +...|..++.++...|++++|+..|+++++ ..|+ +.++..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 556889999999999999999999998876 899999999999999999999999999999 6785 8999999999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCc
Q 001911 964 LIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
|...|++++|+..+++.+.....
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999998776544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=77.25 Aligned_cols=99 Identities=9% Similarity=-0.028 Sum_probs=90.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 959 (997)
+....+.++..+...|++++|.++|+.+...+|. +...|..|+.++...|++++|+..|.++.. +.|| +.++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 4556778999999999999999999999999886 899999999999999999999999999999 6785 899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 960 LIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 960 l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
++.+|...|+.+.|.+-|+......
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999876543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0001 Score=86.73 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHH
Q 001911 571 QANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLC 650 (997)
Q Consensus 571 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 650 (997)
.|.++-+..+.. +.+...|...|......+++++|.++.++++..-.... -.--.-.|.++++.-.
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE------------eeEKLNiWiA~lNlEn 1508 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE------------EEEKLNIWIAYLNLEN 1508 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch------------hHHHHHHHHHHHhHHH
Confidence 344444334332 55667888889999999999999999999876531100 0112236777777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 001911 651 KVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALK 730 (997)
Q Consensus 651 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 730 (997)
.-|.-+...++|++..+.. ....+|..|...|.+.+++++|.++++.|.+.- .-....|...+..+.++.+.+.|..
T Consensus 1509 ~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1509 AYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred hhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHH
Confidence 7787888899999988652 345678899999999999999999999998862 3477889999999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 731 VISKMLEDSYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 731 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
++.+.++.=.+. ........+..-.+.|+.+.+..+|+......++ ....|+.+|+.-.++|+.+.+..+|++....+
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 999988752111 2334445566667889999999999998876433 56789999999999999999999999999998
Q ss_pred CCCC-H-HHHHHHHHHHHhcCCHHHH
Q 001911 810 CAPN-F-VTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 810 ~~p~-~-~~~~~l~~~~~~~g~~~~A 833 (997)
+.|. . ..|.-.+.-=-..|+-+.+
T Consensus 1665 l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1665 LSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CChhHhHHHHHHHHHHHHhcCchhhH
Confidence 8874 2 3344444433344554433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0049 Score=66.09 Aligned_cols=76 Identities=7% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001911 300 PDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNV-VTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSL 378 (997)
Q Consensus 300 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 378 (997)
-|..+|+.||+-+..+ .++++.+.++++... .|.. ..|..-|..-....+++..+.+|.+....-+ +...|..-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 3677888888777666 788888888887654 3433 4555666777777888888888887776533 34444444
Q ss_pred HH
Q 001911 379 IH 380 (997)
Q Consensus 379 i~ 380 (997)
++
T Consensus 93 l~ 94 (656)
T KOG1914|consen 93 LS 94 (656)
T ss_pred HH
Confidence 44
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.9e-05 Score=73.32 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=125.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHh
Q 001911 783 TAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSRE 862 (997)
Q Consensus 783 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 862 (997)
..+...+...|+-+.+..+....... ..-|.......+....+.|++.+|...+.+.....
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------------ 130 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------------------ 130 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC------------------
Confidence 55667777788888888877776553 12256666678888889999999999998887642
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELY 942 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 942 (997)
+++...|+.++.+|.+.|+.++|...|.++.+..|+ ++.+.++++..+...|+++.|..++
T Consensus 131 ----------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 131 ----------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---EPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred ----------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---CchhhhhHHHHHHHcCCHHHHHHHH
Confidence 456678888999999999999999999999988776 7888889999999999999999998
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 943 VDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYS 979 (997)
Q Consensus 943 ~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~ 979 (997)
...... .+ |..+-..|+.+....|++++|.++...
T Consensus 192 l~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 192 LPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888873 34 577778888888899999998876643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.9e-05 Score=87.28 Aligned_cols=213 Identities=11% Similarity=0.099 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQ-MVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMI 751 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 751 (997)
+......+=.+....|..++|- +++.++.+ ++..........+++.-...... .+..+...+-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 3344444444556666666653 33333321 22222222233333333333332 3456688888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLL 830 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 830 (997)
....+.|++++|..+++...+.... +......++..+.+.+++++|+..+++.+.. .| +......+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999999986322 5566777888899999999999999999987 56 577788888999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMT 909 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 909 (997)
++|..+|++....+ |+ ..++..++.++.+.|+.++|...|+++.
T Consensus 171 ~~A~~~y~~~~~~~-----------------------------------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 171 EQADACFERLSRQH-----------------------------------PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHHhcC-----------------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999987632 44 5578889999999999999999999998
Q ss_pred cCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 910 SFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 910 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
+.... ....|+.+ .++...-...|+++
T Consensus 216 ~~~~~---~~~~~~~~------~~~~~~~~~~~~~~ 242 (694)
T PRK15179 216 DAIGD---GARKLTRR------LVDLNADLAALRRL 242 (694)
T ss_pred HhhCc---chHHHHHH------HHHHHHHHHHHHHc
Confidence 76432 33444433 23334444455554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00041 Score=67.42 Aligned_cols=253 Identities=14% Similarity=0.081 Sum_probs=165.0
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 001911 648 GLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDL 727 (997)
Q Consensus 648 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 727 (997)
-+.-.|++..+...-...... +.+...-..+.++|...|.+..... .... |-.|.......+.......++.+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHH
Confidence 344467777776665554432 2344444456667777777644332 2222 223444455555554445555554
Q ss_pred HHHH-HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 728 ALKV-ISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 728 A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
-+.- .+.+.......+......-...|++.|++++|.+...... +......=+..+.+..+++-|.+.+++|+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3444443333333333333456889999999999887732 22333333344778899999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh
Q 001911 807 SKGCAPNFVTYRVLINHCCA----SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV 882 (997)
Q Consensus 807 ~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 882 (997)
+- .+..|.+-|..++.+ .+...+|.-+|++|.++. .|+.
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~----------------------------------~~T~ 207 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT----------------------------------PPTP 207 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc----------------------------------CCCh
Confidence 74 466777767776654 457899999999998865 5777
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDK-AFELYVDMIRKDGSPEL 954 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~ 954 (997)
.+.+-++.++...|++++|..+++.++...++ ++.+..+++-+-...|+-.+ -.+.+.++.. ..|+.
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h 275 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---DPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEH 275 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcc
Confidence 77888889999999999999999999998776 77788877777677776544 4456666665 45653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.5e-05 Score=74.83 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=67.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCC-HHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESL-SLARK--IDKAFELYVDMIRKDGSPE-LST 956 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~-~~~ 956 (997)
+...|..|+..|...|++++|+..|+++....|+ +...+..++.++ ...|+ .++|.++++++++ ..|+ ..+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~a 146 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTA 146 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhH
Confidence 3456667777777777777777777777776654 666666666653 45555 4777777777777 4563 666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+..|+..+.+.|++++|+..++++++...+
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777777777777777777777776665444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.4e-05 Score=78.96 Aligned_cols=120 Identities=16% Similarity=0.072 Sum_probs=80.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH
Q 001911 786 IDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI 864 (997)
Q Consensus 786 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 864 (997)
...+...|++++|+..++.+... .| |..-+......+.+.++.++|.+.++++....
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-------------------- 370 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-------------------- 370 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------
Confidence 33455667777777777777665 45 45556666677777777777777777776542
Q ss_pred HHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 865 VSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 865 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
|+ ......++.+|.+.|+..+|+..++......|. ++..|..|+.+|...|+..+|...+.
T Consensus 371 ---------------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~---dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 371 ---------------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE---DPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred ---------------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchHHHHHHHHHHHhCchHHHHHHHH
Confidence 44 334556677777777777777777777766654 77777777777777777766666554
Q ss_pred HH
Q 001911 944 DM 945 (997)
Q Consensus 944 ~~ 945 (997)
+.
T Consensus 433 E~ 434 (484)
T COG4783 433 EG 434 (484)
T ss_pred HH
Confidence 43
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00018 Score=69.20 Aligned_cols=187 Identities=15% Similarity=0.042 Sum_probs=142.6
Q ss_pred cCCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 001911 757 VGKTEEAYKVMLMMEEK---G-CYPNVV-TYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLL 830 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 830 (997)
..+.++..+++.++... | ..|+.. .|..++-+....|+.+-|...++++..+ + | +..+-..-.-.+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 35677888888777652 3 445554 3455666677889999999999999887 2 5 444444444456678999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
++|.++++...++. +.+...+.--+.+...+|+.-+|++-+....+
T Consensus 103 ~~A~e~y~~lL~dd----------------------------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD----------------------------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred hhHHHHHHHHhccC----------------------------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999988754 22344555666677778888899999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHhhccC
Q 001911 911 FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN---KWEEALQLSYSICHTD 984 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g---~~~eA~~~~~~~~~~~ 984 (997)
..++ |..+|..++..|...|++++|.-+|++++- ..|- +..+-.|++.++-.| +.+-|.+++.+.+...
T Consensus 149 ~F~~---D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 149 KFMN---DQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HhcC---cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8776 999999999999999999999999999998 7895 666678888877665 5667788887765543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00037 Score=82.28 Aligned_cols=132 Identities=11% Similarity=0.121 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEH-GCNP---NVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYT 748 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 748 (997)
+...|-..|......++.++|.+++++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3444555555555555555555555555442 1100 11234444444444444444444454444321 1123344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS 807 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 807 (997)
.|...|.+.+++++|.++++.|.++ +.-....|..++..+.++.+-+.|..++++.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4444455555555555555555443 222334444444444454444555555544444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=73.92 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
......++..+...|++++|.+.++.+....|. +...+..++.++...|++++|...++++++ ..|+ ...+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l 91 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence 345677889999999999999999999987765 889999999999999999999999999998 4575 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.+|...|++++|...+++....+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999887654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00013 Score=85.53 Aligned_cols=240 Identities=9% Similarity=0.080 Sum_probs=160.0
Q ss_pred CCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 001911 635 KEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNN-IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYG 713 (997)
Q Consensus 635 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 713 (997)
.+.+...+..|+..+...+++++|.++.+..... .|+. ..|-.+...+.+.++..++..+ .+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~------------- 89 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL------------- 89 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh-------------
Confidence 4566778999999999999999999999977765 3443 3344444466777776655554 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 714 SLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 714 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
+.......++.....+...|.+. .-+...+-.+..+|-+.|+.++|..+++++.+.... |+...|.+...|...
T Consensus 90 --l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 90 --IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-
Confidence 22233333443333444444443 234457778888888889999999999998887633 788888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 794 KVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
++++|.+++.+.+.. +...+++.++..++.++.... |.+..-+..+.+. +
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~k--------------i 213 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERK--------------V 213 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHH--------------H
Confidence 888988888887764 445557777777777765532 2222222211111 1
Q ss_pred ccC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 001911 874 GKT-DSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLS 930 (997)
Q Consensus 874 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 930 (997)
... +..--...+.-+-..|.+.++|++++.+++.+++.+|. |..+...++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~---n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK---NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc---chhhHHHHHHHHH
Confidence 110 11122345666778888999999999999999998875 7777777887776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0012 Score=64.21 Aligned_cols=170 Identities=21% Similarity=0.154 Sum_probs=113.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001911 662 LDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYA 741 (997)
Q Consensus 662 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 741 (997)
.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+.|.+.+++|.+-
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3333333323343333334445778888888888776621 2222222344566777888888888888763
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001911 742 PNVVIYTEMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTY 817 (997)
Q Consensus 742 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 817 (997)
.+..+.+.|..++.+ .+++.+|.-+|++|.++ .+|++.+.+....++...|++++|..++++.+.+. .-++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHH
Confidence 355566666666554 45788889999998876 67788888888888888999999999999988873 3367777
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHh
Q 001911 818 RVLINHCCASGLLDEA-HNLLEEMKQ 842 (997)
Q Consensus 818 ~~l~~~~~~~g~~~~A-~~~~~~m~~ 842 (997)
..++.+-...|...++ .+.+.+...
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7777777777766544 344444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-05 Score=71.45 Aligned_cols=95 Identities=14% Similarity=0.026 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
....++..+...|++++|...|+.+....++..........|+.++...|++++|+..++..... ...+.++..++++
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHH
Confidence 44567889999999999999999999876443333556777899999999999999999774331 1235678899999
Q ss_pred HHhcCCHHHHHHHHHHh
Q 001911 964 LIRVNKWEEALQLSYSI 980 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~ 980 (997)
|.+.|++++|+..|++.
T Consensus 128 ~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 128 YLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHCCCHHHHHHHHHHh
Confidence 99999999999999864
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.3e-05 Score=81.39 Aligned_cols=124 Identities=23% Similarity=0.234 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
.-..|+..+...++++.|..+++++.+.. |.. ...++..+...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~-----------------------------------pev--~~~LA~v~l~~ 213 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD-----------------------------------PEV--AVLLARVYLLM 213 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC-----------------------------------CcH--HHHHHHHHHhc
Confidence 34455666777889999999999987643 443 44578888889
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEAL 974 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~ 974 (997)
++-.+|++++++..+..|. +...+..-+.-|...++++.|+++.+++++ ..|+ ..+|..|+.+|.+.|++++|+
T Consensus 214 ~~E~~AI~ll~~aL~~~p~---d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQ---DSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred CcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999987765 677777777888899999999999999999 7896 789999999999999999999
Q ss_pred HHHHHhh
Q 001911 975 QLSYSIC 981 (997)
Q Consensus 975 ~~~~~~~ 981 (997)
..++.+-
T Consensus 289 laLNs~P 295 (395)
T PF09295_consen 289 LALNSCP 295 (395)
T ss_pred HHHhcCc
Confidence 9998764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00013 Score=77.09 Aligned_cols=173 Identities=18% Similarity=0.121 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 001911 776 YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV 855 (997)
Q Consensus 776 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 855 (997)
.|+...+...+.+......-..+-.++- +..+ +-...........+...|.+++|+..++.+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------------ 335 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLA-KRSK--RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA------------ 335 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHH-HHhC--ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh------------
Confidence 3455555555554443333333333222 2222 123334444555566778899999999887654
Q ss_pred HHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 856 IEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 856 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
.|+.+ .+...++.+.+.++.++|.+.++++....|+ ....+..++.+|.+.|+
T Consensus 336 -----------------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~~~~a~all~~g~ 389 (484)
T COG4783 336 -----------------------QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLLQLNLAQALLKGGK 389 (484)
T ss_pred -----------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhcCC
Confidence 36665 4456678999999999999999999999886 68888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchhh
Q 001911 935 IDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEE 991 (997)
Q Consensus 935 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~ 991 (997)
+.+|+..++.... -.| |+..|..|+++|.++|+..+|..-+....-....|.+..
T Consensus 390 ~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 390 PQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI 445 (484)
T ss_pred hHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999988 457 589999999999999888888777766665555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.5e-05 Score=69.30 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=81.6
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 801 LLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 801 l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
.+++.+.. .| +......+...+...|++++|...++...... +
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------------------p 48 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----------------------------------P 48 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----------------------------------C
Confidence 45555554 44 34556667777788888888888887765532 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+...+..++..|...|++++|...++++....|. +...+..++.++...|++++|.+.++++.+ ..|+
T Consensus 49 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 117 (135)
T TIGR02552 49 YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---DPRPYFHAAECLLALGEPESALKALDLAIE--ICGE 117 (135)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccc
Confidence 23456777888888888888888888888776654 677778888888888888888888888888 5565
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.8e-05 Score=76.61 Aligned_cols=291 Identities=11% Similarity=0.011 Sum_probs=165.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 001911 648 GLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDL 727 (997)
Q Consensus 648 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 727 (997)
.+.+..++.+|+..+...+... +.+..-|..-...+...|++++|..-.+.-.+.... ........-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 4566777788888888877765 344555555555666677777776666555443211 11222223333333344444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH-HHHhccCCHHHHHHHHHHH
Q 001911 728 ALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKG-CYPNVVTYTAMI-DGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 728 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li-~~~~~~g~~~~A~~l~~~m 805 (997)
|.+.++. ...+ ....|+..++...... -+|...+|..+- .++.-.|+.++|.+.--..
T Consensus 136 A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 4433330 0000 1112222222222221 124444444332 2345567777777766665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhh
Q 001911 806 SSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPA 884 (997)
Q Consensus 806 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~ 884 (997)
++.. .-+......-..++.-.++.+.|...|++...... ..+..-.... .|. ...
T Consensus 196 lkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp----dh~~sk~~~~-------------------~~k~le~ 251 (486)
T KOG0550|consen 196 LKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP----DHQKSKSASM-------------------MPKKLEV 251 (486)
T ss_pred Hhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccCh----hhhhHHhHhh-------------------hHHHHHH
Confidence 5531 11333333333344456777777777777655331 1111100000 111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNS-AASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
+..-++-..+.|++.+|.+.|..++..+|.+ .++...|...+......|+.++|+.--+.+++ +.|. ..++..-+.
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence 4445566678889999999999988887654 46667777777777788888888888888887 6676 568888888
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCc
Q 001911 963 GLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+|...++|++|.+.+++..+....
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 888889999999888887665443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.7e-05 Score=69.11 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFV 958 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~ 958 (997)
..+..++..+.+.|++++|++.++++....|+.......+..++.++...|++++|...++++.. ..|+ ..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHHH
Confidence 35677889999999999999999999987665433456788899999999999999999999998 3454 46789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 959 HLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
.++.+|.+.|++++|...++.+.....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 999999999999999999999887643
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=78.11 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
..-++-..+.+++++|+..|.++++..|. |...|..-+.+|.+.|.++.|++..+.++. +.|. ..+|..|+.+|
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHH
Confidence 34456677788888888888888888776 778888888888888888888888888888 7786 57888888888
Q ss_pred HhcCCHHHHHHHHHHhhccCCccc
Q 001911 965 IRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 965 ~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
...|++++|++.|++.++.+..|.
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcH
Confidence 888888888888888888777765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.2e-06 Score=68.02 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA 973 (997)
+|+++.|+.+++++.+..|... +...+..++.++.+.|++++|+.++++ .+ ..|+ ......++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 6899999999999998876412 566777799999999999999999998 44 4454 56777889999999999999
Q ss_pred HHHHHH
Q 001911 974 LQLSYS 979 (997)
Q Consensus 974 ~~~~~~ 979 (997)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999986
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00096 Score=78.56 Aligned_cols=236 Identities=12% Similarity=0.113 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 484 STYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY 563 (997)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 563 (997)
..+..|+..+...+++++|.++.+...+.... ....|-.+...+.+.++++++..+ .++..+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~ 93 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhc
Confidence 35566666666667777777776655554211 222333333345555554444333 122223
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHH
Q 001911 564 LKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYG 643 (997)
Q Consensus 564 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (997)
....++.-+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+.. +.|+.+.|
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----------------~~n~~aLN 154 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----------------RDNPEIVK 154 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------cccHHHHH
Confidence 3333333333333334332 2233456666667777777777777777776643 45566666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 001911 644 ALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK 723 (997)
Q Consensus 644 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 723 (997)
.+...|... ++++|.+++.+.... |...+++..+.++|.++....+. +
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d--------------- 202 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-D--------------- 202 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-c---------------
Confidence 666666666 677776666665432 44445666666666666655322 1
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 001911 724 RLDLALKVISKMLED-SYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 790 (997)
.+.-.++.+.+... +...-+.++-.+-..|-..++++++.++++.+.+.... |.....-++..|.
T Consensus 203 -~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 203 -FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22222223333222 22233445555566677777777888887777776433 5555566666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.037 Score=59.65 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVG---KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKV 731 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 731 (997)
.+++..+++.....-..-+..+|..+.+-=-..- +.+...+.++++...-..--..+|...++...+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455666665544322233344443333211111 3566667777776643222334677788888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 001911 732 ISKMLEDSYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC 810 (997)
Q Consensus 732 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 810 (997)
|.++.+.+..+ ++..+++++..||. ++.+-|.++|+--..+ ..-++.--...+.-+...++-..|..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999887666 78899999998884 8889999999876654 333455556778888899999999999999999877
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 811 APN--FVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 811 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
.|+ ...|..++.-=..-|++..+.++-+++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 765 678999999888999999999998887654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00062 Score=61.87 Aligned_cols=99 Identities=8% Similarity=-0.058 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+......+...+...|++++|.++|+-..... +-+...|..|+-++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----------------------------------p~~~~y~~gLG~~~ 79 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD----------------------------------AWSFDYWFRLGECC 79 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------cccHHHHHHHHHHH
Confidence 35556677778889999999999998876532 12345778899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
...|++++|+..|.++....|+ ++..+..++.++...|+.+.|.+.|+.++..
T Consensus 80 Q~~g~~~~AI~aY~~A~~L~~d---dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 80 QAQKHWGEAIYAYGRAAQIKID---APQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHhhHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876 8899999999999999999999999999874
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=62.49 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.+..++..+...|++++|+..++++.+..|. +...+..++.++...|++++|.+.+++..+ ..|+ ..++..++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHH
Confidence 3567888999999999999999999887654 557888899999999999999999999998 4464 678999999
Q ss_pred HHHhcCCHHHHHHHHHHhhccC
Q 001911 963 GLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
++...|++++|...+++.....
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHccC
Confidence 9999999999999999876543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.5e-05 Score=53.11 Aligned_cols=34 Identities=41% Similarity=0.758 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc
Q 001911 303 VLYTKMISGLCEASLFEEAMDLLNRMRARSCIPN 336 (997)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 336 (997)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00013 Score=79.13 Aligned_cols=91 Identities=8% Similarity=0.029 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRV 967 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~ 967 (997)
+..+...|++++|++.|++++...|. +...|..++.+|...|++++|+..++++++ +.|+ ..+|..++.+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 44445555666666666665555543 455555555555555666666666666555 4453 45555556666666
Q ss_pred CCHHHHHHHHHHhhccC
Q 001911 968 NKWEEALQLSYSICHTD 984 (997)
Q Consensus 968 g~~~eA~~~~~~~~~~~ 984 (997)
|++++|+..+++.+..+
T Consensus 84 g~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 84 EEYQTAKAALEKGASLA 100 (356)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 66666666655554443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=74.53 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
-..|..|.+.|.-.|+++.|+.+-+.-.. |.+.|.+.. ...-++..|+++++
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~------------ia~efGDrA----------------aeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLE------------IAQEFGDRA----------------AERRAHSNLGNCHI 246 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHH------------HHHHhhhHH----------------HHHHhhcccchhhh
Confidence 34577777777788899998887765322 111111110 11225667999999
Q ss_pred hcCCHHHHHHHHHHHhcCC---CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFS---SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK----D-GSPELSTFVHLIKGLI 965 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~y~ 965 (997)
-.|+++.|++.|+...... .+-.........|+..|....++++|+.+..+-++- + ..-+.-++..|+.+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999998865321 112345566677888998899999999988775541 1 1223558889999999
Q ss_pred hcCCHHHHHHHHHHhhccCCc
Q 001911 966 RVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~~~~~ 986 (997)
..|.++.|+.+.+..++...+
T Consensus 327 alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 999999999998876654443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00076 Score=62.80 Aligned_cols=126 Identities=16% Similarity=0.161 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPN---VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN--FVTYRVL 820 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~l 820 (997)
.|..++..+ ..++...+...++.+...... + ......+...+...|++++|...|+........|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 368888888888888875322 2 23334455777888999999999999888752232 3355567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEV 900 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 900 (997)
..++...|++++|+..++...... .....+..++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~-----------------------------------~~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA-----------------------------------FKALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc-----------------------------------hHHHHHHHHHHHHHHCCCHHH
Confidence 788888999999999886633211 122345678899999999999
Q ss_pred HHHHHHHH
Q 001911 901 ALELHEEM 908 (997)
Q Consensus 901 A~~~~~~~ 908 (997)
|...|+++
T Consensus 137 A~~~y~~A 144 (145)
T PF09976_consen 137 ARAAYQKA 144 (145)
T ss_pred HHHHHHHh
Confidence 99998875
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00085 Score=70.52 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
+..++..+.+.|++++|+++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555555555555555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0028 Score=65.64 Aligned_cols=282 Identities=15% Similarity=0.077 Sum_probs=169.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNI 675 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 675 (997)
..+.+..++..|+..+....+.. +.++.-|..-...+...+++++|.--.+.-.+.. +-...
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-----------------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k 118 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-----------------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSK 118 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-----------------ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccc
Confidence 45566777888888888877653 4556666667777777788888876665554432 11222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HH
Q 001911 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSY-APNVVIYTEMI-DG 753 (997)
Q Consensus 676 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li-~~ 753 (997)
.....-.++...++..+|.+.++. ...+ ....|+..++....... +|...+|..+- .+
T Consensus 119 ~~~r~~~c~~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~c 178 (486)
T KOG0550|consen 119 GQLREGQCHLALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAEC 178 (486)
T ss_pred cccchhhhhhhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhh
Confidence 333444455555555555555541 1111 12223333333333221 24444444442 45
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHHhCCCCCCHHHHHH------------
Q 001911 754 LIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG--FGKVGKVDKCLELLRQMSSKGCAPNFVTYRV------------ 819 (997)
Q Consensus 754 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~------------ 819 (997)
+.-.|+.++|...--....... ...+..++++ +.-.++.+.|+..|++.+.. .|+...-..
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 5667788877776666554321 1122233332 34567778888888887775 354322211
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 820 -LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 820 -l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
-.+-..+.|++.+|.+.+.+..... |....|+...|...+....+.|+.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~id------------------------------P~n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNID------------------------------PSNKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCC------------------------------ccccchhHHHHHHhHhhhcccCCc
Confidence 1233456788888888887766532 223456666788888889999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++|+.-.+++.+.++. -...+..-+.++...++|++|++.|+++.+....++
T Consensus 304 ~eaisdc~~Al~iD~s---yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 304 REAISDCNEALKIDSS---YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCE 355 (486)
T ss_pred hhhhhhhhhhhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999988632 334444445555667999999999999998654443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00051 Score=73.96 Aligned_cols=125 Identities=14% Similarity=0.200 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCC 825 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~ 825 (997)
...|+..+...++++.|.++|+++.+.. |+. ...++..+...++-.+|++++++.+.. .| +...+..-...|.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445566667889999999999999873 443 445778888888999999999999875 45 6777777778889
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
+.++++.|+.+.+++... .|+ ..+|..|+.+|...|++++|+-.
T Consensus 246 ~k~~~~lAL~iAk~av~l-----------------------------------sP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL-----------------------------------SPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred hcCCHHHHHHHHHHHHHh-----------------------------------CchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998764 354 45899999999999999999999
Q ss_pred HHHHhcCC
Q 001911 905 HEEMTSFS 912 (997)
Q Consensus 905 ~~~~~~~~ 912 (997)
++.+....
T Consensus 291 LNs~Pm~~ 298 (395)
T PF09295_consen 291 LNSCPMLT 298 (395)
T ss_pred HhcCcCCC
Confidence 98876653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00029 Score=63.23 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK 894 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 894 (997)
.++..++..+...|++++|...++++.... |.. ......+..++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~------------------------------~~~~~~~~~l~~~~~~ 51 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKS------------------------------TYAPNAHYWLGEAYYA 51 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCc------------------------------cccHHHHHHHHHHHHh
Confidence 456778888899999999999999987643 000 1113456779999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.|++++|+..++.+....|+......++..++.++...|++++|...++++++ ..|+
T Consensus 52 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~ 108 (119)
T TIGR02795 52 QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK--RYPG 108 (119)
T ss_pred hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH--HCcC
Confidence 99999999999999987776444567788999999999999999999999999 4575
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=68.31 Aligned_cols=97 Identities=12% Similarity=-0.062 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...|..++..+...|++++|+..++++....++......++..++.++...|++++|+..++++++ ..|+ ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 346778889999999999999999999877554333456899999999999999999999999998 5676 6677788
Q ss_pred HHHHH-------hcCCHHHHHHHHHHh
Q 001911 961 IKGLI-------RVNKWEEALQLSYSI 980 (997)
Q Consensus 961 ~~~y~-------~~g~~~eA~~~~~~~ 980 (997)
+.+|. +.|++++|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 88888 888888666666543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00036 Score=67.26 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
..+..++..|...|++++|+..++++.+..+........+..++.++...|++++|...++++++ ..|+ ...+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 36788999999999999999999999876543222357888999999999999999999999999 6685 77888999
Q ss_pred HHHHhcCC--------------HHHHHHHHHHhhccC
Q 001911 962 KGLIRVNK--------------WEEALQLSYSICHTD 984 (997)
Q Consensus 962 ~~y~~~g~--------------~~eA~~~~~~~~~~~ 984 (997)
.+|...|+ +++|.+.+++....+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99998887 466666666665544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0037 Score=57.25 Aligned_cols=131 Identities=16% Similarity=0.103 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHH
Q 001911 811 APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILID 890 (997)
Q Consensus 811 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 890 (997)
.|....-..|..++...|+..||...|++...--+ ..+......+.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f---------------------------------A~d~a~lLglA~ 132 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIF---------------------------------AHDAAMLLGLAQ 132 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc---------------------------------CCCHHHHHHHHH
Confidence 46656666667777777777777777766543210 122334455666
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~ 970 (997)
+....++..+|...++++.+.+|. .-.+.....++..+...|++++|...++.++. ..|++.+....+.-+.++|+.
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~pa-~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYNPA-FRSPDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCc-cCCCCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcch
Confidence 666677777777777776665442 22344555666667777777777777777776 667766666666667777766
Q ss_pred HHHHHHH
Q 001911 971 EEALQLS 977 (997)
Q Consensus 971 ~eA~~~~ 977 (997)
++|...+
T Consensus 210 ~ea~aq~ 216 (251)
T COG4700 210 REANAQY 216 (251)
T ss_pred hHHHHHH
Confidence 6665444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.5e-05 Score=50.30 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001911 374 IFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPG 406 (997)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 406 (997)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN02413 choline-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.5e-06 Score=82.81 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=54.2
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAAD 87 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (997)
-||.||+|.|++||.+.++.++++|.++|+.....++.+.||. .|+++.|+||++++....
T Consensus 38 LfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~---------~ER~e~V~acKyVDeVV~ 98 (294)
T PLN02413 38 LFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTE---------DERYESLRHCKWVDEVIP 98 (294)
T ss_pred hCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCH---------HHHHHHHHhcccccEEee
Confidence 4899999999999999999999999999998877776677787 999999999998876544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=56.12 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++..+...|++++|++.|+++.+..|. +...+..++.++...|++++|...|+++++ ..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 556666777777777777777766654 667777777777777777777777777766 4454
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00091 Score=66.60 Aligned_cols=110 Identities=19% Similarity=0.093 Sum_probs=87.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHH
Q 001911 822 NHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEV 900 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 900 (997)
+-+.+.+++++|+..+.+..+. .|..+ .|..-+.+|.+.|.++.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-----------------------------------~P~nAVyycNRAAAy~~Lg~~~~ 133 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-----------------------------------DPTNAVYYCNRAAAYSKLGEYED 133 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-----------------------------------CCCcchHHHHHHHHHHHhcchHH
Confidence 3456677888888888777653 46655 45567889999999999
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHH
Q 001911 901 ALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS-TFVHLIKGLIRVNKWE 971 (997)
Q Consensus 901 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~y~~~g~~~ 971 (997)
|++-.+.++..+|. ...+|..|+.+|...|++++|++.|+++++ +.|+.+ ...+|-.+--+.+.-.
T Consensus 134 AVkDce~Al~iDp~---yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 134 AVKDCESALSIDPH---YSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhcChH---HHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999876 789999999999999999999999999999 889844 4446666554444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.8e-05 Score=49.78 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 001911 303 VLYTKMISGLCEASLFEEAMDLLNRMRARSCIP 335 (997)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 335 (997)
.+||.+|.++++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888887777766
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00088 Score=72.69 Aligned_cols=109 Identities=9% Similarity=-0.064 Sum_probs=89.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
....+...|++++|+.++++..+.. +.+...|..++.+|...|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~----------------------------------P~~~~a~~~~a~~~~~~g~~~ 53 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD----------------------------------PNNAELYADRAQANIKLGNFT 53 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 3556678899999999999887643 223457888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRV 967 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~ 967 (997)
+|+..+++++...|. +...|..++.+|...|++++|+..|+++++ +.|+ ..+...+..+..+.
T Consensus 54 eAl~~~~~Al~l~P~---~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 54 EAVADANKAIELDPS---LAKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCcC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH
Confidence 999999999998875 788999999999999999999999999999 6785 55555555554443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00056 Score=69.89 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVH 959 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 959 (997)
.|..-...+.+.|++++|+..|+.+.+..|++...+.++..++.+|...|++++|...|+++++ ..|+ ..++..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK--NYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhHHHHH
Confidence 3444444456789999999999999998887555567888999999999999999999999998 4464 568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 960 LIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 960 l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
++.+|...|++++|...++++...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988763
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0091 Score=60.69 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 924 LLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
.++.-|.+.|++..|+.-++.+++ -.|+ .++...++.+|...|..++|.+....+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 355667888999999999999998 4565 5789999999999999999999887654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=57.14 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHhhc
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN-KWEEALQLSYSICH 982 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g-~~~eA~~~~~~~~~ 982 (997)
..+|..++..+...|++++|+..|+++++ +.|+ ..++..++.+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34445555555555555555555555555 3443 445555555555555 45555555554443
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.002 Score=62.14 Aligned_cols=117 Identities=17% Similarity=0.055 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHY 892 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 892 (997)
...+..+...+...|++++|...+++....... .+. ...+..++.+|
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------~~~~~~~~~~la~~~ 82 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED--------------------------------PNDRSYILYNMGIIY 82 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc--------------------------------cchHHHHHHHHHHHH
Confidence 444556666666667777776666665432100 011 23455666677
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCCCHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK--------------IDKAFELYVDMIRKDGSPELSTFV 958 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~p~~~~~~ 958 (997)
.+.|++++|++.++++....|. +...+..++.++...|+ +++|.+.++++.+ ..|+. +.
T Consensus 83 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~--~~ 155 (172)
T PRK02603 83 ASNGEHDKALEYYHQALELNPK---QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN--YI 155 (172)
T ss_pred HHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh--HH
Confidence 7777777777777777665543 45555566666665554 5667777777666 44543 44
Q ss_pred HHHHHHHhcCC
Q 001911 959 HLIKGLIRVNK 969 (997)
Q Consensus 959 ~l~~~y~~~g~ 969 (997)
.++..+...|+
T Consensus 156 ~~~~~~~~~~~ 166 (172)
T PRK02603 156 EAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHhcCc
Confidence 44444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00077 Score=68.88 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC----hhhHHHHHH
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI----VPAYRILID 890 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~ 890 (997)
..|...+..+.+.|++++|...|+.+...+ |+ ..++..++.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----------------------------------P~s~~a~~A~y~LG~ 188 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----------------------------------PDSTYQPNANYWLGQ 188 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----------------------------------cCCcchHHHHHHHHH
Confidence 345555555567899999999999988765 33 246788999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
+|...|++++|+..|+++.+..|++.....++..++.++...|++++|.+.|+++++ ..|+.
T Consensus 189 ~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 189 LNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 999999999999999999998888777888999999999999999999999999999 56863
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00079 Score=57.22 Aligned_cols=95 Identities=24% Similarity=0.180 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
++..+...+...|++++|...++++.+.. +.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~ 47 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD----------------------------------PDNADAYYNLAAAYYKL 47 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC----------------------------------CccHHHHHHHHHHHHHH
Confidence 35667788888999999999999887643 12235677789999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
|++++|.+.+++.....|. +...+..++..+...|++++|...++++.+
T Consensus 48 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 48 GKYEEALEDYEKALELDPD---NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHhCCCc---chhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 9999999999999887654 557888899999999999999999999887
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.023 Score=57.83 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++..|.+.|.+..|+.-++.+.+..|+......+...+..+|...|..++|......+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4778899999999999999999999888888899999999999999999999987766543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00021 Score=56.61 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCC
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR-KIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p 952 (997)
+...|..++..+...|++++|+..|+++.+.+|. +..+|..++.++...| ++++|++.++++++ +.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK--LDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH--HST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH--cCc
Confidence 3457889999999999999999999999999886 8999999999999999 79999999999998 445
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00017 Score=59.68 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 827 SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHE 906 (997)
Q Consensus 827 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 906 (997)
.|++++|+.+++++.+.. ...|+...+..++.+|.+.|++++|+++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~--------------------------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD--------------------------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH--------------------------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC--------------------------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 578899999998887642 001233456668999999999999999999
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 907 EMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
+ .+..+. +......++.++.+.|++++|++.++++
T Consensus 50 ~-~~~~~~---~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 50 K-LKLDPS---NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp C-HTHHHC---HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred H-hCCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 8 444332 5566667799999999999999999874
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00012 Score=48.32 Aligned_cols=33 Identities=27% Similarity=0.614 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 373 RIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQP 405 (997)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (997)
.+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0021 Score=64.58 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=88.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-CHH
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR---KIDKAFELYVDMIRKDGSP-ELS 955 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~ 955 (997)
.|...|..|+.+|...|+.+.|...|.++.+..|. |+..+..++.++..+. ...++..+++++++ ..| |+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ir 228 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIR 228 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHH
Confidence 34568999999999999999999999999999875 8899999998886652 47899999999999 678 588
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+...|+..+++.|++.+|...|+.|+...
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998754
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=8.8e-05 Score=47.65 Aligned_cols=31 Identities=42% Similarity=0.843 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 001911 303 VLYTKMISGLCEASLFEEAMDLLNRMRARSC 333 (997)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (997)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00089 Score=61.11 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 961 (997)
...+..+.-+..+|++++|..+|+-+...++. +...|..|+.++...+++++|+..|..+... .+ |+....+.+
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~dp~p~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccchHH
Confidence 35566778888999999999999999988776 7888999999999999999999999999884 34 577799999
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 001911 962 KGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+|...|+.+.|..-++.+.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999988776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.28 Score=54.59 Aligned_cols=216 Identities=15% Similarity=0.143 Sum_probs=124.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRN-GLIP--------DVYTYTILIDNFCK 530 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~ 530 (997)
..=.+++|.++.++ .|.+..|..+.......-.++-|...|-..... |++. +...-.+=+.+ -
T Consensus 675 e~vgledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~ 746 (1189)
T KOG2041|consen 675 EAVGLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--F 746 (1189)
T ss_pred HHhchHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--h
Confidence 33445566655443 477788888877777777778888777654331 2211 00011111122 2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHH
Q 001911 531 AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPN----IVTFTALIDGHCKAGDIER 606 (997)
Q Consensus 531 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~ 606 (997)
-|.+++|.+++-+|-++++ .+..+.+.|++-.+.++++. .|-..| ..+++.+...+.....++.
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888766532 36666777777766666543 111111 3567777888888888888
Q ss_pred HHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 001911 607 ACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK 686 (997)
Q Consensus 607 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 686 (997)
|.+.|..-... ...+.+|.+...+++-..+-+.+ +.+....-.+.+++..
T Consensus 815 A~~yY~~~~~~-------------------------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 815 AAKYYSYCGDT-------------------------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHhccch-------------------------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHh
Confidence 88877754321 23455565555555554444443 3445556667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 687 VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 687 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
.|.-++|.+.|-+... |. ..+..|...+++.+|.++-++
T Consensus 865 vGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hchHHHHHHHHHhccC----cH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 7777777665533211 11 234456666666666666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00048 Score=53.70 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 924 LLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.++..+...|++++|++.|+++++ ..|+ ..++..++.++...|++++|..++++++...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 367788899999999999999999 5686 7899999999999999999999999987643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0021 Score=56.47 Aligned_cols=96 Identities=21% Similarity=0.176 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHL 960 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 960 (997)
...++.++...|+.++|+.+|+++.........-...+..++..+...|++++|+.++++.... .|+ ......+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHH
Confidence 4558889999999999999999998865433334668888999999999999999999999984 354 3455677
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc
Q 001911 961 IKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+.++...|+++||+..+-..+.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999998865443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00047 Score=54.39 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=39.1
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
...|++++|++.|+++....|+ +..++..++.+|...|++++|.+.++++.. ..|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 3567777777777777776665 667777777777777777777777777777 4565
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0023 Score=54.69 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=87.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE---LSTFVHLIKG 963 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 963 (997)
.-+.+....|+++.|++.|.+++...|. +..+|++-++++..+|+.++|+.-++++++..-... -.+|...+.+
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3456788999999999999999988775 889999999999999999999999999998421112 3578889999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCccchh
Q 001911 964 LIRVNKWEEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~~~~~~~~~ 990 (997)
|...|+.+.|..-|++..+.|-+|-+.
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~FAr~ 151 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSKFARE 151 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCHHHHH
Confidence 999999999999999999999888653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0033 Score=68.03 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 671 EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEH--GCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYT 748 (997)
Q Consensus 671 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 748 (997)
+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=..-|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444444444444445555554444433 111112233344555555555555555554444445555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMI 786 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 786 (997)
.|++.+.+.|++..|.++...|...+...+..|+..-+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 55555555555555555544444443333444443333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.03 Score=55.50 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=38.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 001911 925 LIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHLIKGLIRVNKWEEAL 974 (997)
Q Consensus 925 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~y~~~g~~~eA~ 974 (997)
++.-|.+.|.+..|...++.+++ --|+ ..+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 56778889999999999999999 4676 357889999999999988543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0037 Score=67.68 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=97.2
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 001911 477 KGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRN--GLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVV 554 (997)
Q Consensus 477 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 554 (997)
.+.+.+......+++.+....+++.+..++...... ....-..|..++++.|.+.|..++++.++..=..-|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344566677777888887778888888888777654 221223455688999999999999999999888889999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 555 TYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKA 601 (997)
Q Consensus 555 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 601 (997)
++|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988888877777777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0051 Score=59.05 Aligned_cols=115 Identities=10% Similarity=-0.122 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 795 VDKCLELLRQMSS-KGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 795 ~~~A~~l~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
+..+...+..+.+ .+-.-....|..++..+...|++++|...+++......
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---------------------------- 66 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---------------------------- 66 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----------------------------
Confidence 3444444555532 22111355667777788888999999998888765320
Q ss_pred ccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH-------hcCCHHHHHHHHHH
Q 001911 874 GKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLS-------LARKIDKAFELYVD 944 (997)
Q Consensus 874 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 944 (997)
..+ ...++..++.+|...|++++|++.++++....|. ....+..++.++. ..|++++|...+++
T Consensus 67 ----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 67 ----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred ----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 011 1236778889999999999999999998887654 4566777777776 66777655444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.005 Score=63.49 Aligned_cols=293 Identities=16% Similarity=0.131 Sum_probs=173.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH--H--cCCC-CCHHhHHHHHHH
Q 001911 648 GLCKVHKVREAHDLLDAMSVVGCEPNN----IVYDALIDGFCKVGKLDEAQMVFSKML--E--HGCN-PNVYTYGSLIDR 718 (997)
Q Consensus 648 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~--~--~g~~-p~~~~~~~li~~ 718 (997)
-+|+.|+......+|+..++.| .-|. .+|..|..+|.-.+++++|+++...=+ . .|-+ -...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 5899999999999999999988 4443 446777888888889999988754311 1 1100 011222233344
Q ss_pred HHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH-
Q 001911 719 LFKDKRLDLALKVISKML----EDSYA-PNVVIYTEMIDGLIKVGK--------------------TEEAYKVMLMMEE- 772 (997)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 772 (997)
+-..|.+++|+-+-.+-+ +.|-+ .....+-.+.+.|...|+ ++.|.++|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444566666654433221 11111 112345556666665543 2334444443221
Q ss_pred ---CCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH----hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 773 ---KGCY-PNVVTYTAMIDGFGKVGKVDKCLELLRQMS----SKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 773 ---~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
.|-. .-...|..|...|.-.|++++|+...+.-+ +.|-+. ....+..+.+++.-.|+++.|.+.++.....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 012346666667777899999998765533 233222 3567888999999999999999999765321
Q ss_pred CCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCcchh
Q 001911 844 YWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFS---SNSAASRN 920 (997)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 920 (997)
-.++.+. .......+.|++.|.-..++++|+..+++-+... ....-...
T Consensus 265 --------------------------Aielg~r--~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 265 --------------------------AIELGNR--TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred --------------------------HHHhcch--hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 0111100 1112245678999988899999998887754321 01112456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCC
Q 001911 921 STLLLIESLSLARKIDKAFELYVDMIRKDGSP-E----LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 921 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~y~~~g~ 969 (997)
++..|+.++...|..++|+.+.++.++....- | ..+...|.+.-...|.
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 77788999999999999998888776633221 2 2234455555555554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00029 Score=45.14 Aligned_cols=29 Identities=34% Similarity=0.811 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 001911 374 IFHSLIHAYCRSGDYSYAYKLLSKMRKCG 402 (997)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 402 (997)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.018 Score=65.31 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=95.5
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH--------HHHHHHHHH
Q 001911 774 GCYPNVVTYTAMIDGFGK--V---GKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLL--------DEAHNLLEE 839 (997)
Q Consensus 774 g~~p~~~~~~~li~~~~~--~---g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~--------~~A~~~~~~ 839 (997)
+.+.|...|...+.+... . ++.++|..+|++.++. .|+ ...|..+..++.....+ ..+....++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345677777777776432 2 3367888888888886 675 44555544444322111 111111111
Q ss_pred HHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch
Q 001911 840 MKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR 919 (997)
Q Consensus 840 m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 919 (997)
... +. ....+...|..++-.+...|++++|...++++....| +.
T Consensus 410 a~a------------------------------l~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p----s~ 453 (517)
T PRK10153 410 IVA------------------------------LP--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM----SW 453 (517)
T ss_pred hhh------------------------------cc--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CH
Confidence 110 00 0112234677777777788999999999999999875 56
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001911 920 NSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVH 959 (997)
Q Consensus 920 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 959 (997)
..|..++..+...|++++|.+.|+++.. +.|...+|+.
T Consensus 454 ~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~ 491 (517)
T PRK10153 454 LNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYW 491 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHH
Confidence 7899999999999999999999999999 7786444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.024 Score=59.58 Aligned_cols=84 Identities=15% Similarity=0.072 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhccCCCCCC-----hh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc--hhhHHHHHHHHHhc-
Q 001911 862 EFIVSLGLVNEMGKTDSVPI-----VP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS--RNSTLLLIESLSLA- 932 (997)
Q Consensus 862 ~~~~a~~~~~~~~~~~~~p~-----~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~- 932 (997)
++..|.+.+++........+ .. .+...+-++...|+...|.+.+++.....|+.... ......|+.++-..
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 56666666666654332221 11 22233445556677777777777777776643222 22333444444332
Q ss_pred -CCHHHHHHHHHHH
Q 001911 933 -RKIDKAFELYVDM 945 (997)
Q Consensus 933 -g~~~~A~~~~~~~ 945 (997)
..+.+|+.-|..+
T Consensus 250 ~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 250 VEAFTEAVAEYDSI 263 (282)
T ss_dssp CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHccc
Confidence 3466666666554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0042 Score=52.22 Aligned_cols=78 Identities=21% Similarity=0.372 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 001911 487 SKVIGYLCDASEAEKAFLLFQEMKRNGL-IPDVYTYTILIDNFCKAG--------LIEQARNWFDEMVKEGCDPNVVTYT 557 (997)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~ 557 (997)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .+-+.+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3345555555777777777777777777 677777777777766542 1334455555555555666666666
Q ss_pred HHHHHHH
Q 001911 558 ALIHAYL 564 (997)
Q Consensus 558 ~ll~~~~ 564 (997)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5555543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.019 Score=52.59 Aligned_cols=107 Identities=14% Similarity=-0.023 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 896 (997)
......-+...|++++|..+|.-+.... .-+...|..|+.++...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d----------------------------------~~n~~Y~~GLaa~~Q~~k 85 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD----------------------------------FYNPDYTMGLAAVCQLKK 85 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------cCcHHHHHHHHHHHHHHH
Confidence 3444555668899999999998765422 122335667888999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
++++|+.+|..+....++ |+..+...+.++...|+.++|...++.+++ .|........+..
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~l~~~~~A~~~f~~a~~---~~~~~~l~~~A~~ 146 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLLMRKAAKARQCFELVNE---RTEDESLRAKALV 146 (165)
T ss_pred HHHHHHHHHHHHHHcccC---CCCccchHHHHHHHhCCHHHHHHHHHHHHh---CcchHHHHHHHHH
Confidence 999999999998876554 777788899999999999999999999998 4653333333333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.015 Score=66.07 Aligned_cols=139 Identities=15% Similarity=0.031 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-
Q 001911 810 CAPNFVTYRVLINHCCA--SG---LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP- 883 (997)
Q Consensus 810 ~~p~~~~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~- 883 (997)
...|...|...+.+... .+ ..+.|..+|++..+.. |+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-----------------------------------P~~a~ 377 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-----------------------------------PDFTY 377 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-----------------------------------CCcHH
Confidence 35577888888877543 22 3678888888877643 5432
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001911 884 AYRILIDHYIKA--------GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS 955 (997)
Q Consensus 884 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 955 (997)
.|-.++.+|... ++++.+.+..+++...+. ...++.++..++......|++++|...++++++ +.|+..
T Consensus 378 a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~ 454 (517)
T PRK10153 378 AQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWL 454 (517)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHH
Confidence 333333333221 234556666666555321 123567788887777788999999999999999 679988
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+|..++++|...|+.++|.+.+++....+..
T Consensus 455 a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 455 NYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998776654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0059 Score=51.35 Aligned_cols=75 Identities=12% Similarity=0.371 Sum_probs=48.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 344 LCGCLRKRQLGRCKRVLSMMITEGC-YPSPRIFHSLIHAYCRS--------GDYSYAYKLLSKMRKCGFQPGYVVYNILI 414 (997)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~li 414 (997)
|.-|...+++.....+|+.+++.|+ -|++.+|+.++.+.++. +++-..+.+|++|+..++.|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 45555555555554443 23456788999999999999999999999
Q ss_pred Hhhh
Q 001911 415 GGIC 418 (997)
Q Consensus 415 ~~~~ 418 (997)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 8763
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0046 Score=61.42 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHL 960 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 960 (997)
.+..+..+.+.|++.+|...|...++..|++.-.+.++..|+.++...|++++|...|..+.+ -.|+ +.++.-|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k--~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK--DYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH--hCCCCCCChHHHHHH
Confidence 344666677889999999999999999998887888889999999999999999999999998 3454 6899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc
Q 001911 961 IKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+.+..+.|+.++|...|+.+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999998765
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.053 Score=53.72 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
.+++.|.+.|.+..|+.-++.+.+..|++.....++..++.+|.+.|..+.|..
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 477899999999999999999999988877777888899999999999885543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.42 Score=49.69 Aligned_cols=291 Identities=15% Similarity=0.097 Sum_probs=178.2
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHHH
Q 001911 642 YGALIDGLCK--VHKVREAHDLLDAMSVVGCEPNNIVYDALIDG--FCKVGKLDEAQMVFSKMLEHGCNPNVY--TYGSL 715 (997)
Q Consensus 642 ~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l 715 (997)
|.+|-.++.. .|+-..|.+.-.+.... +..|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555555543 56777777766554321 12333333344433 34569999999999999873 2222 12233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHH--HHHHHHHH---
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNVVT--YTAMIDGF--- 789 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~--~~~li~~~--- 789 (997)
.-.--+.|..+.|.++-+.....- +.-...+...+...|..|+++.|+++++.-.+. -+.++..- -..|+.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333347899999999988887652 233567888899999999999999999876653 23344321 11222211
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAPNFVT-YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
.-.-+...|...-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-+..
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e------------------------ 293 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE------------------------ 293 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC------------------------
Confidence 112346667666666555 3676433 3344578899999999999999887643
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
|....+ +...+.+.|+ .++.-++++....+.-..|.......+.+-...|++..|....+.+..
T Consensus 294 -----------PHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 294 -----------PHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred -----------CChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 433321 2233344444 333333333322111112666667777777778888888877777777
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHh
Q 001911 949 DGSPELSTFVHLIKGLIRV-NKWEEALQLSYSI 980 (997)
Q Consensus 949 ~~~p~~~~~~~l~~~y~~~-g~~~eA~~~~~~~ 980 (997)
..|...+|..|+++--.. |+-.++...+-+.
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 667777788888776555 7777777776654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.43 Score=49.64 Aligned_cols=290 Identities=17% Similarity=0.130 Sum_probs=186.6
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 521 YTILIDNFC--KAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYL--KARKPSQANELFETMLSKGCIPNIVTFTALID 596 (997)
Q Consensus 521 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 596 (997)
|..|-.++. -.|+-..|.++-.+..+. +..|....-.++.+.. -.|+++.|.+-|+.|.. |+.+-..-+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 444444443 356777777776665432 2335555555555433 35899999999999875 2333222222
Q ss_pred ----HHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcC-CC
Q 001911 597 ----GHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVG-CE 671 (997)
Q Consensus 597 ----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 671 (997)
..-+.|+.+.|.++-++.-+.. +.-...+.+.+...|..|+++.|+++++.-.... +.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-----------------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-----------------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-----------------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 2346788888888888876642 3445678889999999999999999998776533 23
Q ss_pred CCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001911 672 PNNIV--YDALIDGFC---KVGKLDEAQMVFSKMLEHGCNPNVYT-YGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV 745 (997)
Q Consensus 672 ~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 745 (997)
++..- -..|+.+-. -..+...|...-.+..+. .||..- -..-..++++.|+..++-.+++.+-+....|++
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i- 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI- 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH-
Confidence 33321 122222211 123566677666666654 445432 223457789999999999999999987544443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH 823 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~ 823 (997)
+. +..+.+.|+. +..-+++.... ..+| +......+..+-...|++..|..--+..... .|....|..|.+.
T Consensus 299 -a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdI 371 (531)
T COG3898 299 -AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADI 371 (531)
T ss_pred -HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHH
Confidence 32 2234455653 33333333321 1333 5566777788888999999888877776664 7888899999988
Q ss_pred HHhc-CCHHHHHHHHHHHHhc
Q 001911 824 CCAS-GLLDEAHNLLEEMKQT 843 (997)
Q Consensus 824 ~~~~-g~~~~A~~~~~~m~~~ 843 (997)
-... |+-.++..++.+....
T Consensus 372 eeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhhccCchHHHHHHHHHHhcC
Confidence 7765 9999999999887653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.001 Score=52.41 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 930 SLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 930 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
...|++++|++.|+++.. ..|+ ..++..++.+|.+.|++++|..+++++......
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 468999999999999999 5785 889999999999999999999999998876554
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=52.68 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVH 959 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 959 (997)
.+..-+....+.|++++|++.|+.+....|.+.-...+-..|+.+|.+.|++++|...+++.++ +.|. ..+++.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHH
Confidence 4555677778899999999999999998888777888999999999999999999999999999 6775 357777
Q ss_pred HHHHHHhcCC---------------HHHHHHHHHHhhc
Q 001911 960 LIKGLIRVNK---------------WEEALQLSYSICH 982 (997)
Q Consensus 960 l~~~y~~~g~---------------~~eA~~~~~~~~~ 982 (997)
.+-++.++.. ..+|...+++++.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 7777777766 7777777776654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.018 Score=58.02 Aligned_cols=101 Identities=11% Similarity=-0.037 Sum_probs=81.8
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHH
Q 001911 811 AP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILI 889 (997)
Q Consensus 811 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 889 (997)
.| |...|..|..+|...|+.+.|...|.+..+.. .++...+..++
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----------------------------------g~n~~~~~g~a 197 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA----------------------------------GDNPEILLGLA 197 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----------------------------------CCCHHHHHHHH
Confidence 45 78999999999999999999999999887642 23344455555
Q ss_pred HHHHhc---CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 890 DHYIKA---GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 890 ~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
.++..+ ....+|..+++++...+|. |..+...|+..+...|++.+|...++.|.+.
T Consensus 198 eaL~~~a~~~~ta~a~~ll~~al~~D~~---~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 198 EALYYQAGQQMTAKARALLRQALALDPA---NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 544332 3678899999999999876 8899999999999999999999999999994
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0031 Score=50.47 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
..+|.+.+++++|++.++++....|. +...|...+.++...|++++|.+.++++++ ..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALE--LSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCC
Confidence 35678888888999888888888775 788888888888888899999888888888 5675
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=61.02 Aligned_cols=131 Identities=14% Similarity=0.154 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK-DKRLDLALKVISKMLEDSYAPNVVIYTEMIDG 753 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 753 (997)
.+|..++....+.+..+.|..+|.++.+.+. .+..+|......-.. .++.+.|..+|+..++. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3555666666666666666666666664322 123333333333222 34555567777666654 34455666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 001911 754 LIKVGKTEEAYKVMLMMEEKGCYPNV---VTYTAMIDGFGKVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 754 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 808 (997)
+.+.|+.+.|..+|++.... +.++. ..|..++.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66667777777777766654 22222 36666666666667777777776666664
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.032 Score=49.09 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+..++..|...|++++|+.++++.....|+-..+.....+++.++...|++++|++.+-..+.
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555667777777777777777777665443333444555566666777777777776665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.016 Score=57.64 Aligned_cols=105 Identities=20% Similarity=0.170 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
.|+.-+ .+.+.|++.+|...|....+.+.. + .-...++++|+..+...
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~------------------------------s-~~~~nA~yWLGe~~y~q 191 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPN------------------------------S-TYTPNAYYWLGESLYAQ 191 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCC------------------------------C-cccchhHHHHHHHHHhc
Confidence 455444 455678899999999998876511 1 12234688899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
|++++|...|..+.+..|.+.-.+..+..|+.+....|+.++|-..|+++++ -.|+.
T Consensus 192 g~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k--~YP~t 248 (262)
T COG1729 192 GDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK--RYPGT 248 (262)
T ss_pred ccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCC
Confidence 9999999999999998888777889999999999999999999999999999 57874
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.021 Score=54.67 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 001911 299 VPDTVLYTKMISGLCEA-----SLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPR 373 (997)
Q Consensus 299 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 373 (997)
..|..+|..+|..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 45666666666666543 4555555556666666666666666666665532 2211 1111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 001911 374 IFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGI 417 (997)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 417 (997)
... +-.-| -.+-+-|++++++|...|+-||..++..++..+
T Consensus 108 fQ~-~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 108 FQA-EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHH-HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Confidence 111 10011 123456788888888888888888888888776
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0037 Score=50.05 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 926 IESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 926 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
...|...+++++|.+.++++++ ..|+ +..+..++.+|...|++++|.+.++.++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567889999999999999999 6785 78999999999999999999999999887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.24 Score=45.92 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=68.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh-CCCCC---CHHHHH
Q 001911 231 YKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK-EEFVP---DTVLYT 306 (997)
Q Consensus 231 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p---~~~~~~ 306 (997)
..|++.--..|..++.+.|+..+|...|++....-+.-|......+.++....+++.+|...+++ +...| ...+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45777777788888889999999999998887655556677777777777777777777777665 11112 112233
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC
Q 001911 307 KMISGLCEASLFEEAMDLLNRMRAR 331 (997)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~ 331 (997)
.+.+.|...|++.+|..-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4455666666666666666666554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.022 Score=54.47 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=72.3
Q ss_pred CCCchhHHHHHHHHHhc-----CC---HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH
Q 001911 267 SMDGFTLGCFAYSLCKA-----GR---WKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVV 338 (997)
Q Consensus 267 ~~~~~~~~~li~~~~~~-----g~---~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (997)
..+..+|..++..|.+. |. ...|++.+++.|+..|..+|+.|++++=+ |++- -..+|+.+--+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h------- 114 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH------- 114 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc-------
Confidence 56888999999999865 43 45688889999999999999999998865 2221 11222222111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 001911 339 TFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGD 387 (997)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 387 (997)
.-.+-+-|.+++++|...|+.||..++..|++.|.+.+.
T Consensus 115 ----------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ----------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 123456677888888888888888888888888765554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.73 E-value=1.1 Score=47.86 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=44.9
Q ss_pred hHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001911 884 AYRILIDH--YIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS 955 (997)
Q Consensus 884 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 955 (997)
.-+.|.++ +..+|++.++.-.-.=..+.. |++.++..++.++....+|++|..++.+ ++|+..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~ia----PS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~ 526 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIA----PSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNER 526 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchh
Confidence 45556654 567888888875544444443 4888899888888888999999888776 556543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.041 Score=57.53 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=100.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK-VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+. +..+...|...++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888889999999999998653 2233444444444233 56777799999999886 55688889999999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPN---FVTYRVLINHCCASGLLDEAHNLLEEMKQTY 844 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 844 (997)
+.+.|+.+.|..+|++.+.. +.++ ...|...+.-=.+.|+++...++.+++.+..
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999986 3332 3489999998899999999999999987753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.051 Score=48.73 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..-.....+.|++++|.+.|+.+...+ |. | .-...+-..|+.+|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~-----------------------------g-~ya~qAqL~l~yayy 58 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-PF-----------------------------G-EYAEQAQLDLAYAYY 58 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC-----------------------------C-cccHHHHHHHHHHHH
Confidence 4444455556677899999999999887654 11 1 111234567899999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC---------------HHHHHHHHHHHHHcCCCCC
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK---------------IDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~~~~p~ 953 (997)
+.|++++|+..+++.++..|.++.-+.++...+.++..... ..+|...++++++ .-|+
T Consensus 59 ~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~--~yP~ 131 (142)
T PF13512_consen 59 KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR--RYPN 131 (142)
T ss_pred HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH--HCcC
Confidence 99999999999999999998877667777777766666554 7888888888888 5676
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.14 Score=56.37 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=54.6
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHH---------HHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCC
Q 001911 637 PNVYTYGALIDGLCKVHKVREAHDLL---------DAMSVVGCEPNNIVYDALIDGFCKVGKLD--EAQMVFSKMLEHGC 705 (997)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~ 705 (997)
+-...+.+-+-.|...|.+++|.++- +.+... ..+...++..-++|.+..+.. +.+.-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 33444444455667777777776432 111111 123344556666777766543 44455667778887
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 706 NPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 706 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
.|+... +...++-.|++.+|.++|.+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 777654 34556677888888888865
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.027 Score=59.05 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+.+|+.+|.+.+++.+|++..++.+..+|+ |...+..-+.+|...|+++.|...|+++++ +.|+ ..+-..|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~---N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el 331 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN---NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAEL 331 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 346778999999999999999999999999876 889999999999999999999999999999 8896 5666677
Q ss_pred HHHHHhcCCHHHH-HHHHHHhhc
Q 001911 961 IKGLIRVNKWEEA-LQLSYSICH 982 (997)
Q Consensus 961 ~~~y~~~g~~~eA-~~~~~~~~~ 982 (997)
+.+-.+.-.+++. .++|..|..
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776666555444 777777755
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.11 Score=56.08 Aligned_cols=94 Identities=13% Similarity=-0.005 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H--HHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-L--STF 957 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~--~~~ 957 (997)
|..+...++.++...++.+.|..+|+++...+|+ ...+|...++.+...|+.++|.+.++++++ +.|. . .+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~ 411 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVI 411 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHH
Confidence 3446677888888899999999999999999887 788999999999999999999999999999 7896 2 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
-..++.|+..+ .++|++++-+-
T Consensus 412 ~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 412 KECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHcCCc-hhhhHHHHhhc
Confidence 33444677665 78899888653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.084 Score=59.58 Aligned_cols=182 Identities=17% Similarity=0.158 Sum_probs=120.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHH----hcCCHHHH
Q 001911 764 YKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAPNF-----VTYRVLINHCC----ASGLLDEA 833 (997)
Q Consensus 764 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~~~~~l~~~~~----~~g~~~~A 833 (997)
.-+|+-+... ++|. +..++...+-.||-+.+++++.+..+. |+.-.. ..|...+..++ .....+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3444545443 3433 345555566677888888877776653 222111 12333333333 24577888
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHhcCC
Q 001911 834 HNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYR-ILIDHYIKAGRLEVALELHEEMTSFS 912 (997)
Q Consensus 834 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~ 912 (997)
.++++.+.+.+ |+...|. .-+..+...|+.++|++.++++....
T Consensus 253 ~~lL~~~~~~y-----------------------------------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q 297 (468)
T PF10300_consen 253 EELLEEMLKRY-----------------------------------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQ 297 (468)
T ss_pred HHHHHHHHHhC-----------------------------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch
Confidence 88888888765 6655443 45678889999999999999876522
Q ss_pred -CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHhhccC
Q 001911 913 -SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKW-------EEALQLSYSICHTD 984 (997)
Q Consensus 913 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~-------~eA~~~~~~~~~~~ 984 (997)
.........+..+++++....+|++|...+.++.+..-.....-.+..+-+|...|+. ++|.+++.++....
T Consensus 298 ~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 298 SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 1113456677789999999999999999999999833221133344677788899999 89999988775543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.018 Score=53.57 Aligned_cols=101 Identities=19% Similarity=0.092 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNS--AASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
.=++-+.+.|++++|..-|..++...|.. ......|..-+.+..+.++++.|+..-.++++ +.|. ..+....+.+
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 34567788999999999999999876543 22345566667777888999999999999999 7786 5677788999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCccch
Q 001911 964 LIRVNKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
|.+..++++|+.-|+++++.+..-.+
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999987765543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.37 Score=47.81 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=90.9
Q ss_pred hccCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKG-CAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSL 867 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~ 867 (997)
.+.|++++|.+.|+.+.... ..| ...+...++.++.+.+++++|...+++....+..+.-..|...+++.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~------ 118 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY------ 118 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH------
Confidence 45666666666666666541 111 3445555666666666666666666666655433333333333333220
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--cchhh------------HHHHHHHHHhcC
Q 001911 868 GLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA--ASRNS------------TLLLIESLSLAR 933 (997)
Q Consensus 868 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~------------~~~l~~~~~~~g 933 (997)
+..+. +....+.-..+|..-|++.....|++. ++... =..++.-|.+.|
T Consensus 119 --~~~i~---------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 119 --FFQID---------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred --hccCC---------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00000 000011122334444455555555442 11111 112455667788
Q ss_pred CHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 934 KIDKAFELYVDMIRKDGSPE----LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 934 ~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
.+..|..-++.|++. .|+ ..++..+..+|...|..++|.+.-+-|
T Consensus 182 ~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 182 AYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred ChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 999999999999985 454 357778888999999999988876644
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=63.25 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=58.8
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 879 VPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 879 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
.|+ ...++.++.+|...|++++|+..|+++++.+|+...-..+|.+++.+|.+.|++++|++.++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344 4588899999999999999999999999998762211256999999999999999999999999994
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.13 Score=47.98 Aligned_cols=70 Identities=23% Similarity=0.299 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR-----KDGSPELST 956 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 956 (997)
+...++..+...|++++|+++.+++...+|. +...|..++.+|...|+..+|.+.|+++.+ .|+.|.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4566788889999999999999999999886 899999999999999999999999998843 577887543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0065 Score=49.38 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSF---SSNSAA-SRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+++.++..|...|++++|++.++++.+. .+...+ -..++..++.++...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888888888888888887643 111111 245666777777777777777777777654
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.14 Score=52.50 Aligned_cols=178 Identities=12% Similarity=0.026 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCC--CHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYP---NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG---CAP--NFVT 816 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p--~~~~ 816 (997)
.|-.+..++-+..++.+++.+-+.-... |..| -.....++..++.-.+.++++++.|+...+-- -.| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444555555555555555555443332 2222 11233456667777788999999998876521 122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 896 (997)
+..|...|....++++|..+..+..+......+..+.. .-.....+.|..++...|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~------------------------kyr~~~lyhmaValR~~G 220 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL------------------------KYRAMSLYHMAVALRLLG 220 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH------------------------HHHHHHHHHHHHHHHHhc
Confidence 88899999999999999988877654211100000000 001113455778888999
Q ss_pred CHHHHHHHHHHHhcC---CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 897 RLEVALELHEEMTSF---SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++-+|.+..+++.+. .++-.........++.+|...|+.|.|+.-|+++..
T Consensus 221 ~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 221 RLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 988888888877653 122122344556788899999999999999988754
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.8 Score=46.04 Aligned_cols=143 Identities=18% Similarity=0.239 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEHG-CNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVI-YTEMI 751 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li 751 (997)
..+|..+++...+..-.+.|..+|-++.+.| +.+++..+++++..++ .|+...|..+|+.-... -||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3556667777777777777778888777777 4567777777776443 56667777777765443 233332 34445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEKGCYPN--VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
..+...++-+.|..+|+...++ +..+ ...|..+|.--..-|+...+..+-++|.+. -|...+......
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~S 543 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTS 543 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHH
Confidence 5666677777777777755443 1112 346777777667777777777777777664 454444333333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0055 Score=49.80 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKD--GSP---E-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p---~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..++..++.+|...|++++|+..|+++++.. ..+ + ..++..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578899999999999999999999998631 222 2 45788999999999999999999998754
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.4 Score=44.51 Aligned_cols=220 Identities=23% Similarity=0.144 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 688 GKLDEAQMVFSKMLEHGCNP-NVYTYGSLIDRLFKDKRLDLALKVISKMLED-SYAPNVVIYTEMIDGLIKVGKTEEAYK 765 (997)
Q Consensus 688 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 765 (997)
+....+...+.......... ....+......+...+.+..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444432211 2334444444555555555555555554431 112233344444444445555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 766 VMLMMEEKGCYPNVVTYTAMID-GFGKVGKVDKCLELLRQMSSKGCAP----NFVTYRVLINHCCASGLLDEAHNLLEEM 840 (997)
Q Consensus 766 ~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m 840 (997)
.+.........+ ......... .+...|++++|...+.+.... .| ....+......+...++.++|...+.+.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 555554432221 111111111 344555555555555555331 22 1222222223333444444444444444
Q ss_pred HhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch
Q 001911 841 KQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR 919 (997)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 919 (997)
.... .. ....+..+...+...++++.|...+..+....|. ..
T Consensus 194 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 236 (291)
T COG0457 194 LKLN----------------------------------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NA 236 (291)
T ss_pred HhhC----------------------------------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cH
Confidence 3321 11 2334445555555555555555555555554322 23
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 920 NSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 920 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..+..+...+...+.++++...+.+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 237 EALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444445555555555555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.30 E-value=2 Score=45.98 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHh----CCCCCcHHhHHHHHHHHHh
Q 001911 301 DTVLYTKMISGLCEASLFEEAMDLLNRMRA----RSCIPNVVTFRILLCGCLR 349 (997)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t~~~ll~~~~~ 349 (997)
|.+.-+..+.++...|++.++..++++|.. +.+..|..+|+.++-.+.+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 444456777888888888888888887764 3444778888876655543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=2.8 Score=47.10 Aligned_cols=171 Identities=13% Similarity=0.099 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHhHHHHHH----------HHHhcCChhHHHHHHHHHHHCCCCC
Q 001911 200 GKLLNVLIHKCCRNGFWNVALEELGRLKDF-GYKPTQAIYNALIQ----------VFLRADRLDTAYLVYREMLDAGFSM 268 (997)
Q Consensus 200 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~----------~~~~~g~~~~a~~~~~~m~~~g~~~ 268 (997)
+++|..|...-.+.-.++-|...|-+.... |++ .-..|-. .-+--|++++|.++|-+|-+++
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh----HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 368998888877777788888777765542 321 1111111 1223578899999988887665
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 001911 269 DGFTLGCFAYSLCKAGRWKEALELIEKEEFVP----DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILL 344 (997)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 344 (997)
..|.++.+.|++-...++++..+... -...|+.+..-+...-.+++|.+.+..-... ...+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 35778888899999999988733222 2457888888888888888888888754321 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 345 CGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSK 397 (997)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (997)
.++.+..++++-+.+-.. ++.+....-.+.+++...|.-++|.+.|-+
T Consensus 830 ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 555555555544333332 244455566677777777777777776644
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.21 E-value=2.1 Score=45.37 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC 825 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~ 825 (997)
+.+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... + -++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44445556667788888887766552 35788888888899988998887765443 1 13356777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELH 905 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 905 (997)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+..
T Consensus 249 ~~~~~~eA~~yI~k~~-------------------------------------------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP-------------------------------------------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC-------------------------------------------hHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888886632 134667788888888887765
Q ss_pred HHHh
Q 001911 906 EEMT 909 (997)
Q Consensus 906 ~~~~ 909 (997)
-+..
T Consensus 286 ~~~k 289 (319)
T PF04840_consen 286 FKEK 289 (319)
T ss_pred HHcC
Confidence 5443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.039 Score=59.32 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=61.3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHhhcc-CCcc
Q 001911 917 ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-L---STFVHLIKGLIRVNKWEEALQLSYSICHT-DINW 987 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~y~~~g~~~eA~~~~~~~~~~-~~~~ 987 (997)
.+...|+.++.+|...|++++|+..|+++++ +.|+ . .+|+.++.+|...|+.++|++.+++.++. ...|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 4789999999999999999999999999999 7897 4 35999999999999999999999999885 3333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.8 Score=43.86 Aligned_cols=224 Identities=22% Similarity=0.175 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHH
Q 001911 723 KRLDLALKVISKMLEDSYA-PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNVVTYTAMIDGFGKVGKVDKCLE 800 (997)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~ 800 (997)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++++++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12345555555566666666666666555431 122344445555555556666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 801 LLRQMSSKGCAPNFVTYRVLIN-HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 801 l~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
.+.........+ ......... .+...|++++|...+++... ..+. ..
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~------------------------------~~ 164 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPE------------------------------LN 164 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC------------------------------cc
Confidence 666666542222 111222222 55666666666666666543 1110 00
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
.....+......+...++.++|...+.++....+.. ....+..+...+...+++++|...+..... ..|+ ...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 240 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDD--DAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALY 240 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--chHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHh
Confidence 011122223333555666666666666666543210 244555566666666666666666666666 3443 44455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 959 HLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.++..+...|.++++...+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 241 NLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555556666666655544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.56 Score=51.85 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 519 YTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGH 598 (997)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 598 (997)
.+...+..-+.+...+.-|-++|..|-.. ..++......+++++|..+-+...+. .|| .|......+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwL 814 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWL 814 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHh
Confidence 33444444444555566666666665421 12455555667777776666554432 233 233344444
Q ss_pred HHcCCHHHHHH
Q 001911 599 CKAGDIERACR 609 (997)
Q Consensus 599 ~~~g~~~~A~~ 609 (997)
+...++++|.+
T Consensus 815 AE~DrFeEAqk 825 (1081)
T KOG1538|consen 815 AENDRFEEAQK 825 (1081)
T ss_pred hhhhhHHHHHH
Confidence 45555544443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.2 Score=54.15 Aligned_cols=84 Identities=14% Similarity=0.014 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEAL 974 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~ 974 (997)
....+|.++.+++.+.+|. |+.+...++.++...++++.|...++++.. +.|+ ..+|+..++..+-.|+.++|.
T Consensus 318 ~~~~~a~~~A~rAveld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 318 LAAQKALELLDYVSDITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 4577899999999999876 999999999999999999999999999999 8898 789999999999999999999
Q ss_pred HHHHHhhccC
Q 001911 975 QLSYSICHTD 984 (997)
Q Consensus 975 ~~~~~~~~~~ 984 (997)
+.+++.+...
T Consensus 393 ~~i~~alrLs 402 (458)
T PRK11906 393 ICIDKSLQLE 402 (458)
T ss_pred HHHHHHhccC
Confidence 9999865543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.092 Score=55.20 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK 894 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 894 (997)
.++..+.-+|.+.+.+.+|+...++.+... +++..+++.-+.+|..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~----------------------------------~~N~KALyRrG~A~l~ 303 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD----------------------------------PNNVKALYRRGQALLA 303 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC----------------------------------CCchhHHHHHHHHHHh
Confidence 356778888899999999999998887653 4566678889999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC-HHHHHHHHHHHHHc
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK-IDKAFELYVDMIRK 948 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 948 (997)
.|+++.|+..|+++++..|. |..+-..|..+-.+..+ .+...++|..|..+
T Consensus 304 ~~e~~~A~~df~ka~k~~P~---Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 304 LGEYDLARDDFQKALKLEPS---NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999886 77777777766655554 45557889999873
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=2 Score=42.42 Aligned_cols=136 Identities=11% Similarity=0.015 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-----GCAPNFVTYRVLI 821 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~~~~~l~ 821 (997)
.+.++..+...|.+.-...++++.++...+.++.....|.+.-.+.|+.+.|..+|++..+. |+.-+..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555555566666666666666554555555566666666666666666666654332 1122222223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001911 822 NHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 901 (997)
..+.-++++-+|...+.++.... ..+....+..+-++.-.|+..+|
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D----------------------------------~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD----------------------------------PRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred hheecccchHHHHHHHhhccccC----------------------------------CCchhhhchHHHHHHHHHHHHHH
Confidence 34445556666666665554432 11222333344444445666667
Q ss_pred HHHHHHHhcCCCCCC
Q 001911 902 LELHEEMTSFSSNSA 916 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~ 916 (997)
++.++.|.+..|+..
T Consensus 306 iK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 306 LKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHhccCCccc
Confidence 777776666655433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=2 Score=42.39 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 001911 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMI---- 751 (997)
Q Consensus 676 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---- 751 (997)
+.+.++..+.-.|.+.-...++.+.++...+.++.....|++.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555556666666667777777766655566666666666667777777777777555432233333333332
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 752 -DGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYR 818 (997)
Q Consensus 752 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 818 (997)
..|.-++++..|...+.+....+.. |+..-|.-.-+..-.|+..+|++..+.|... .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 2344456666677777666654322 4444444444444467777777777777765 45443333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.76 E-value=4.9 Score=46.73 Aligned_cols=284 Identities=14% Similarity=0.074 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------cCCCCCHHhHHHHHHHHHhc
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDG-----FCKVGKLDEAQMVFSKMLE-------HGCNPNVYTYGSLIDRLFKD 722 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 722 (997)
...|.+.++.....| +......+... +....+.+.|+.+|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888887766 23332223222 3455689999999999877 55 333555667777664
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hcc
Q 001911 723 K-----RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK---VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF--GKV 792 (997)
Q Consensus 723 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~ 792 (997)
. +.+.|+.++.+..+.|. |+.... +...+.. ..+...|.++|....+.|.. ....+.++.-.. ...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 3 67889999999988874 444332 2333332 24578999999999988754 222222222222 234
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 793 GKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 793 g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
.+.+.|..++++..++| .|...--...+..+.. +.++.+...+..+.+.+....... + ..+..
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~--------------a-~~l~~ 440 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSN--------------A-AYLLD 440 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhH--------------H-HHHHH
Confidence 57899999999999987 4443333333344444 777777777766655331110000 0 00000
Q ss_pred hccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----CCHHHHHHHHHHHHHc
Q 001911 873 MGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----RKIDKAFELYVDMIRK 948 (997)
Q Consensus 873 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 948 (997)
.......+ .....+.+.+...+.+..... +......|+..|... .+++.|...|..+...
T Consensus 441 ~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~g-----~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 441 QSEEDLFS-----------RGVISTLERAFSLYSRAAAQG-----NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred hccccccc-----------cccccchhHHHHHHHHHHhcc-----CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 00000000 001235555666666666543 666667777766554 3588888888887775
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhccCC
Q 001911 949 DGSPELSTFVHLIKGLIRV---NKWEEALQLSYSICHTDI 985 (997)
Q Consensus 949 ~~~p~~~~~~~l~~~y~~~---g~~~eA~~~~~~~~~~~~ 985 (997)
+ ......|+..+-.- .++..|.++++...+.+.
T Consensus 505 ~----~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 505 G----AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred h----hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence 4 55555666555321 126778888877766543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=5.1 Score=45.90 Aligned_cols=86 Identities=15% Similarity=0.287 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHC 824 (997)
Q Consensus 745 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~ 824 (997)
.+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-+++-+.+.. +.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 344445555667788888888777654 35777788888889999999887777665542 23455578889
Q ss_pred HhcCCHHHHHHHHHHH
Q 001911 825 CASGLLDEAHNLLEEM 840 (997)
Q Consensus 825 ~~~g~~~~A~~~~~~m 840 (997)
.++|+.+||.+++.+.
T Consensus 755 ~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhcccHHHHhhhhhcc
Confidence 9999999999888654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.47 Score=48.25 Aligned_cols=150 Identities=12% Similarity=0.096 Sum_probs=70.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHH
Q 001911 791 KVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLV 870 (997)
Q Consensus 791 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 870 (997)
-.|++.+|...++++++. .+.|...+...-++|.-.|+.+.-...++++... |.
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn------------------------ 168 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WN------------------------ 168 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cC------------------------
Confidence 345555555555555554 2224555555555555556555555555554432 11
Q ss_pred HHhccCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 871 NEMGKTDSVPIVPAYR----ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 871 ~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
|+.|.|. ..+.++.+.|-+++|++..+++++.++. +.-+...++..+.-.|+.+++.+..++--
T Consensus 169 ---------~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 169 ---------ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF---DCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred ---------CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc---chHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 2222111 2233444555555666555555555433 44444444444444555555555533321
Q ss_pred HcCCCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 947 RKDGSP-E---LSTFVHLIKGLIRVNKWEEALQLSYS 979 (997)
Q Consensus 947 ~~~~~p-~---~~~~~~l~~~y~~~g~~~eA~~~~~~ 979 (997)
. ...- + ..-|-|-+-.|.+.+.++.|+++|+.
T Consensus 237 d-~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 237 D-DWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred c-chhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 1 0010 0 12344455555555555555555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.5 Score=42.16 Aligned_cols=188 Identities=17% Similarity=0.172 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Q 001911 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC--YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAPNFVTYRVLI 821 (997)
Q Consensus 745 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~l~ 821 (997)
..|+.-+. -.+.|++++|.+.|+.+....+ +-...+-..++-++.+.+++++|+..+++.... +-.|| .-|..-+
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 34444333 3456888888888888876421 123445556667777888888888888887764 22333 2233333
Q ss_pred HHHHh-------cCCHHHHHHHH---HHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHH
Q 001911 822 NHCCA-------SGLLDEAHNLL---EEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILID 890 (997)
Q Consensus 822 ~~~~~-------~g~~~~A~~~~---~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~ 890 (997)
.+++. ..+..-+...+ ++..+.+ |...-+ ..|...+..+.. ... .=..+++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya------------~dA~~~i~~~~d-----~LA~~Em~Iar 175 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-PNSRYA------------PDAKARIVKLND-----ALAGHEMAIAR 175 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-CCCcch------------hhHHHHHHHHHH-----HHHHHHHHHHH
Confidence 33332 12333333333 3333332 221100 001111111100 000 0124678
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
.|.+.|.+..|..-++.+.+..|........+..+..+|...|..++|...-+-+.. + .|+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~-N-~p~s 237 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA-N-YPDS 237 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh-c-CCCC
Confidence 899999999999999999988776555667777888899999999999886555444 2 4554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.9 Score=46.24 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKG---CYPNVVTYTAMIDGFGK---VGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
.++-.|....+++.-+++.+.+.... +.-....-...+-++.+ .|+.++|++++..++...-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44455777778888888888777541 11112222234445556 7888888888888665555677778877777
Q ss_pred HHH
Q 001911 823 HCC 825 (997)
Q Consensus 823 ~~~ 825 (997)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.64 E-value=6 Score=45.94 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=117.5
Q ss_pred ccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 448 KINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTS--TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILI 525 (997)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 525 (997)
..+...-+..+++...++-|+.+-+.- +..++.. ......+.+.+.|++++|...+-+-+.. +.| ..+|
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 344555667777888888888776543 2223321 2233345566789999999888766543 222 2356
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 526 DNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIE 605 (997)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 605 (997)
.-|.....+.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 6667777788888899999999876 66677789999999999888777765544 2311 112344566777777777
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 001911 606 RACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAM 665 (997)
Q Consensus 606 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 665 (997)
+|..+-..... +..... -.+-..+++++|++.+..+
T Consensus 481 ~a~~LA~k~~~---------------------he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK---------------------HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc---------------------CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 77776655432 122222 2344568899999988876
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.31 Score=50.06 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=142.0
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHC-CCCCCHHHHHHHHHHHhccC
Q 001911 721 KDKRLDLALKVISKMLED--SYAPNVVIYTEMIDGLIKVGKTEEAYKVML----MMEEK-GCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-g~~p~~~~~~~li~~~~~~g 793 (997)
...+.++|+..+.+-+.. +...-..++..+.++.+..|.+++++..-- ...+. .-..-...|..+.+++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444332 001123455566666777777776654321 11111 00012345677777888888
Q ss_pred CHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 794 KVDKCLELLRQMSSK-GCAP---NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~-g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
++.+++.+-+.-... |..| ......++..+....+.++++++.|+.......
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~------------------------ 153 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH------------------------ 153 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh------------------------
Confidence 888888887776652 4444 234455577777778889999998887654210
Q ss_pred HHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-------cchhhHHHHHHHHHhcCCHHHHHH
Q 001911 870 VNEMGKTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-------ASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 870 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
+...|. ...+..|+..|....++++|.-+..++.+.-.... -...+...++-++...|..-.|.+
T Consensus 154 ------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 154 ------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred ------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 011222 22577889999999999999988887765421111 112334456677788888777777
Q ss_pred HHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 941 LYVDMIR----KDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 941 ~~~~~~~----~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.-+++.+ .|-.|- .-....++++|...|+.+.|..-|+.....
T Consensus 228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 7776654 343332 446778999999999999998888775443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.013 Score=38.25 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=24.7
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001911 942 YVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEAL 974 (997)
Q Consensus 942 ~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~ 974 (997)
|+++++ +.|+ +.+|+.|+.+|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 567777 6785 788888888888888888875
|
|
| >COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.0013 Score=57.98 Aligned_cols=58 Identities=5% Similarity=-0.059 Sum_probs=43.1
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSA 85 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (997)
-||.||++.|++||.|. +--+.++...+......++.+.||+ .|+++-+++|++++-.
T Consensus 12 ilH~GHi~~L~~Ak~lG-d~liVv~a~de~~~~~~k~~pi~~~---------~qR~evl~s~ryVD~v 69 (140)
T COG0615 12 ILHPGHIEFLRQAKKLG-DELIVVVARDETVIKRKKRKPIMPE---------EQRAEVLESLRYVDEV 69 (140)
T ss_pred EechhHHHHHHHHHHhC-CeEEEEEeccHHHHHhcCCCCCCCH---------HHHHHHHHcCcchhee
Confidence 38999999999999999 3333334444444544556778888 9999999999976533
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.033 Score=38.98 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 921 STLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 921 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
++..++..|...|++++|++.|+++++ ..|+ +.++..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 344455555555555555555555555 3443 44444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.45 E-value=6.5 Score=45.09 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=64.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 001911 879 VPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFV 958 (997)
Q Consensus 879 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 958 (997)
.|+--.|..-+.+++..++|++-+++-+... .+..|.-+...|.+.|+.+||.++.-+. .+ +.
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk--------sPIGy~PFVe~c~~~~n~~EA~KYiprv-----~~----l~ 774 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK--------SPIGYLPFVEACLKQGNKDEAKKYIPRV-----GG----LQ 774 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC--------CCCCchhHHHHHHhcccHHHHhhhhhcc-----CC----hH
Confidence 4777778888899999999988777666554 2346777888999999999999886653 22 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 001911 959 HLIKGLIRVNKWEEALQLSYS 979 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~ 979 (997)
....+|.+.|++.+|.++.-+
T Consensus 775 ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 775 EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 678889999999999887643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.40 E-value=4.7 Score=43.13 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=107.3
Q ss_pred ceeHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHH
Q 001911 639 VYTYGALIDGLCKVHKVREAHDLLDAMSVVG-CEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTY-GSLI 716 (997)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li 716 (997)
..+|...++...+..-++.|..+|-+..+.+ +.+++.++++++..++ .|+...|..+|+--...- ||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 3467778888888888999999999999888 6788889999998766 488889999998766542 344333 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001911 717 DRLFKDKRLDLALKVISKMLEDSYAPN--VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF 789 (997)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 789 (997)
..+...++-+.|..+|+..++. +..+ -..|..+|..-..-|++..|..+=++|.+. .|-..+-.....-|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 6778889999999999966543 1222 467889999888899999998888888774 44443333333333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.035 Score=38.87 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIE 927 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 927 (997)
.++..++..|...|++++|+++|+++.+..|+ |...|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhhh
Confidence 35778999999999999999999999999886 8888887753
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.6 Score=42.42 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=14.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC
Q 001911 890 DHYIKAGRLEVALELHEEMTSF 911 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~ 911 (997)
..-...+++.+|+++|++....
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557777777777776543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.22 Score=46.32 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS-----KGCAPNFVTY 817 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~ 817 (997)
....++..+...|++++|..+...+....+. |...|..+|.+|...|+..+|++.|+++.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556666677777777777777765332 666777777777777777777777776643 3777765543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.96 E-value=4.7 Score=43.26 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001911 757 VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK---------VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCAS 827 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~ 827 (997)
.|+.++|.+++..+....-.+++.+|..+...|-. ....++|+..|.+.-+. .|+..+=-.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 55666666666654444344455555555444421 12267778877777664 35544333334444444
Q ss_pred CC
Q 001911 828 GL 829 (997)
Q Consensus 828 g~ 829 (997)
|.
T Consensus 273 g~ 274 (374)
T PF13281_consen 273 GH 274 (374)
T ss_pred CC
Confidence 54
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.93 E-value=5.8 Score=47.98 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
..|+.-+..++++-+|-++..+....+. .....|++...|++|+......
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd~~----------~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSDPE----------EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcCHH----------HHHHHHhhHhHHHHHHHHHHhc
Confidence 3455556666666666666666554211 1223344555666666654443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.49 Score=44.58 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR 966 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~ 966 (997)
.++..+...|++++|+..++.....+.+......+-..|+......|++++|+..++...+.+. ........++++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4567889999999999999988865433223344445678888889999999999888665322 23446678999999
Q ss_pred cCCHHHHHHHHHHhhccC
Q 001911 967 VNKWEEALQLSYSICHTD 984 (997)
Q Consensus 967 ~g~~~eA~~~~~~~~~~~ 984 (997)
.|+-++|+.-|++.++++
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999999988865
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.3 Score=50.14 Aligned_cols=163 Identities=16% Similarity=0.098 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKG-CYPNV------VTYTAMIDGFG----KVGKVDKCLELLRQMSSKGCAPNFVTY 817 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~------~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~~~ 817 (997)
.++....-.|+-+.+++.+.+..+.+ +. .+ ..|...+..++ ...+.+.|.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 33444444566666666665554421 11 11 12333333322 356778899999999886 6765555
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 001911 818 R-VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 818 ~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 896 (997)
. .-.+.+...|+.++|...+++..... ..++ +-....+..++..+...+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----~~~~-------------------------Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQ-----SEWK-------------------------QLHHLCYFELAWCHMFQH 319 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccch-----hhHH-------------------------hHHHHHHHHHHHHHHHHc
Confidence 4 34466778899999999998765311 0000 011234667888899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-HhcCCH-------HHHHHHHHHHHH
Q 001911 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESL-SLARKI-------DKAFELYVDMIR 947 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~-------~~A~~~~~~~~~ 947 (997)
+|++|.+.+.++.+.+.. +...|..+..+| ...|+. ++|.+++.++..
T Consensus 320 ~w~~A~~~f~~L~~~s~W---Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKESKW---SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999999886543 555666555544 445777 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.3 Score=42.35 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
..+|..|+.-+...|+.++|..+|+-++...
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 4677788888888899999999999888743
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.8 Score=37.87 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 925 LIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 925 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
-+..+..+|+-++-.+++..+.+. -.|+++....++.+|.+.|...+|-+++++.++.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344556778888888888887653 367788888888888888888888888888888775
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.1 Score=45.42 Aligned_cols=150 Identities=14% Similarity=0.141 Sum_probs=96.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI 864 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 864 (997)
-.......|++.+|..+|+...... .-+...-..++.+|...|+.+.|..++..+....
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------------------- 198 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-------------------- 198 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--------------------
Confidence 3345677888888888888888752 2245667778888888999999888888765421
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 865 VSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVD 944 (997)
Q Consensus 865 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 944 (997)
..........-+..+.+.....+...+-++.... |+ |...-..++..+...|+.++|.+.+-.
T Consensus 199 -------------~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad-Pd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 199 -------------QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD-PD---DVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred -------------hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0000011122344555555555555555555443 33 677777788888888888888888877
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 001911 945 MIRKDGSP-ELSTFVHLIKGLIRVNKWEE 972 (997)
Q Consensus 945 ~~~~~~~p-~~~~~~~l~~~y~~~g~~~e 972 (997)
+++++..- |..+-..|...+...|.-+.
T Consensus 262 ~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 262 LLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 77754333 35666677777777774333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.76 E-value=6.8 Score=41.61 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=76.0
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLF 720 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 720 (997)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... +-++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666677788888877766664 57777788888888888888776665432 113467777888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 721 KDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLM 769 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 769 (997)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777661 224566777888888888765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.62 E-value=5.5 Score=48.15 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=21.2
Q ss_pred CCCceeHHHHHHHHHhcC--ChHHHHHHHHHHHh
Q 001911 636 EPNVYTYGALIDGLCKVH--KVREAHDLLDAMSV 667 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 667 (997)
.|+ .....+|..|++.+ .+++|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 44556777888877 67777777777664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=2 Score=41.10 Aligned_cols=161 Identities=15% Similarity=0.074 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-CAPNFVTYRVLIN 822 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~l~~ 822 (997)
+..||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.--|+++-|.+-+...-+.+ -.|=...|..++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3456666666666666666666666666653332222222222 2234466666665555554431 0111222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCC------CCChhhHHHHHHHHHhcC
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDS------VPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~p~~~~~~~l~~~~~~~g 896 (997)
..-++.+|..-+.+-.+. .+...|-+.+-++--.-+....++.++..... +--..+|.-|++.|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 333455554444332111 11111111111111111111112222221111 011246778999999999
Q ss_pred CHHHHHHHHHHHhcC
Q 001911 897 RLEVALELHEEMTSF 911 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~ 911 (997)
+.++|..+|+-+...
T Consensus 252 ~~~~A~~LfKLaian 266 (297)
T COG4785 252 DLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.3 Score=49.41 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMT 909 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 909 (997)
..|..|++...++|+++-|++.|++..
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 345555555555555555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.42 E-value=7.7 Score=42.37 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=32.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 646 IDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLE 702 (997)
Q Consensus 646 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 702 (997)
..+.-+.|+++...+........ .++...+.++... +.++++++....+++..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566778888755555554422 2344455554433 77888888877777655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.13 Score=52.13 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
..-++-|.++|.+++|+..|.+.....|. |+..+..-+.+|.+..++..|..--+.++. +.-. ..+|...+.+-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~---NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH---NPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQAR 175 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC---CccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHH
Confidence 34668899999999999999999988765 888899999999999999999888888877 3332 66888889999
Q ss_pred HhcCCHHHHHHHHHHhhccCCc
Q 001911 965 IRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 965 ~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
...|+..||.+-++.++....+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcc
Confidence 9999999999999888776554
|
|
| >KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.0071 Score=60.01 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=47.8
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSA 85 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (997)
-|||||+|+|-|||.|-.- +++|.-+|+---+.++-.+|+. .|+|+.++-|++++.-
T Consensus 19 m~HyGHanaLrQAkalGdk--LivGVHsDeeI~~nKGpPV~t~---------eERy~~v~~ikWVDEV 75 (358)
T KOG2803|consen 19 MVHYGHANALRQAKALGDK--LIVGVHSDEEITLNKGPPVFTD---------EERYEMVKAIKWVDEV 75 (358)
T ss_pred hhhhhhhHHHHHHHHhCCe--EEEEecchHHHHhcCCCCcccH---------HHHHHHHhhcchhhhh
Confidence 4899999999999988765 8999988886656665578888 8999999999986543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.03 E-value=5.5 Score=41.78 Aligned_cols=132 Identities=14% Similarity=0.263 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC-
Q 001911 464 YEKAYNVIREMMSKGFIPDTSTYSKVIGYLCD--AS----EAEKAFLLFQEMKRNGL---IPDVYTYTILIDNFCKAGL- 533 (997)
Q Consensus 464 ~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~- 533 (997)
+++.+.+++.|.+.|+.-+..+|.+..-.... .. ....|..+++.|++..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788889999998888777664333322 22 36778999999998743 2345555555544 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcC-C--hhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 534 ---IEQARNWFDEMVKEGCDPNVV-TYTALIHAYLKAR-K--PSQANELFETMLSKGCIPNIVTFTALIDG 597 (997)
Q Consensus 534 ---~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g-~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 597 (997)
.+.+..+|+.+.+.|+..+.. -+.+-+-++.... . ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 467778888888878765433 3333333333322 1 34788999999999999888777665433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.7 Score=43.49 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=77.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001911 822 NHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 901 (997)
+-+.+.|++++|..-|.+..... |+... ......|..-+.++.+.+.|+.|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~----------------------------e~rsIly~Nraaa~iKl~k~e~a 153 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTST----------------------------EERSILYSNRAAALIKLRKWESA 153 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccH----------------------------HHHHHHHhhhHHHHHHhhhHHHH
Confidence 34567788888888887776542 11110 01123456667788999999999
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 902 LELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+.-..++++..|. ...+...-+.+|.+..++++|++-|+++++ ..|. ..+-...+++
T Consensus 154 I~dcsKaiel~pt---y~kAl~RRAeayek~ek~eealeDyKki~E--~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 154 IEDCSKAIELNPT---YEKALERRAEAYEKMEKYEEALEDYKKILE--SDPSRREAREAIARL 211 (271)
T ss_pred HHHHHhhHhcCch---hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCcchHHHHHHHHhc
Confidence 9999999998765 666666678889999999999999999999 6675 3444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.052 Score=35.35 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=26.0
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAF 939 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 939 (997)
|+++++..|+ +..+|..++..|...|++++|+
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677777776 8888888888888888888875
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.71 E-value=2.5 Score=38.86 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=36.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001911 750 MIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGL 829 (997)
Q Consensus 750 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 829 (997)
++..+...+.......+++.+...+. .+...++.++..|++.+ .++.++.++. .++......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444555555555555554432 34445555555554432 2233333331 0122223334555555555
Q ss_pred HHHHHHHHHHH
Q 001911 830 LDEAHNLLEEM 840 (997)
Q Consensus 830 ~~~A~~~~~~m 840 (997)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.1 Score=43.76 Aligned_cols=121 Identities=12% Similarity=-0.016 Sum_probs=94.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALE 903 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 903 (997)
+...|+..+|....+++.+++ +.+..++..--++|...|+.+.-..
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~----------------------------------PtDlla~kfsh~a~fy~G~~~~~k~ 158 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY----------------------------------PTDLLAVKFSHDAHFYNGNQIGKKN 158 (491)
T ss_pred hhccccccHHHHHHHHHHHhC----------------------------------chhhhhhhhhhhHHHhccchhhhhh
Confidence 446788999999999988865 2344456666688889999999999
Q ss_pred HHHHHhcC-CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 904 LHEEMTSF-SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 904 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
.++++..+ +++.+-..+....++.++...|-+++|++..++..+ ++| |.=+...++.++--.|++.|+.++..+-
T Consensus 159 ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 159 AIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99998765 544444466666778888889999999999999998 778 4556677888888999999998887653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.57 E-value=12 Score=41.22 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 783 TAMIDGFGKVGKVDKCLELLRQMSSKGCA-PNFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 783 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
..+..++.+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555556667777777777666653111 123455566666666677777766666643
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.57 E-value=7.3 Score=39.74 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=98.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 682 DGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTE 761 (997)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 761 (997)
......|++.+|...|+........ +......++.+|...|+.+.|..++..+-..--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456789999999999999887655 455667888999999999999999988654321112222223344455544444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA-PNFVTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A 833 (997)
+...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.++.+... -|...-..++..+..-|..+.+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 444444444332 126667777888899999999999988887765322 2556666777777776644443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.42 E-value=5.1 Score=35.22 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=72.6
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 001911 650 CKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLAL 729 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 729 (997)
.-.|..++..+++.+.... .+..-+|.+|--....-+-+-..++++..-+ -.|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence 3356777888888777653 2444455555444444444444444444332 12222 223333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 730 KVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
..+-.+- .+......-++.+.++|+-++-.++...+... -.+++...-.+..+|.+.|+..++.+++++..++|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3322211 12333445566677788888877887777642 34577777778888888888888888888888877
Q ss_pred CC
Q 001911 810 CA 811 (997)
Q Consensus 810 ~~ 811 (997)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 43
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.35 E-value=2.7 Score=37.54 Aligned_cols=96 Identities=16% Similarity=0.220 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 301 DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIH 380 (997)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 380 (997)
|..++..+|-++++.|+.+....+++..-. +.++.. ...+. .-....+.|+..+..++++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345566667777777777766666654432 111100 00000 0112346788999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHh
Q 001911 381 AYCRSGDYSYAYKLLSKMRK-CGFQPGYVVYNILIGG 416 (997)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~ 416 (997)
+|+..|++..|+++.+...+ -++.-+...|..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999998864 5677778888887764
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >cd02174 CCT CTP:phosphocholine cytidylyltransferase | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.0097 Score=54.87 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=49.9
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAA 86 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (997)
.-||.||.+.|++|+.+.++-++++|-.+|+.....++..-||. .++.+.+.+|...+...
T Consensus 12 Dl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~---------~eR~~~l~~~~~Vd~Vi 72 (150)
T cd02174 12 DLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTE---------EERYEAVRHCKWVDEVV 72 (150)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCH---------HHHHHHHHhcCCCCeEE
Confidence 46899999999999999977889999999986655554455666 89999999998876543
|
CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.3 Score=38.55 Aligned_cols=92 Identities=14% Similarity=0.023 Sum_probs=72.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcC
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAP--NFVTYRVLINHCCASG 828 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p--~~~~~~~l~~~~~~~g 828 (997)
-++...|+++.|++.|.+.... .+-+...||.-..++.-+|+.++|++-+++.++. |-.- -...|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567789999999999998886 3347888999999999999999999999998874 3221 1234555566788899
Q ss_pred CHHHHHHHHHHHHhcC
Q 001911 829 LLDEAHNLLEEMKQTY 844 (997)
Q Consensus 829 ~~~~A~~~~~~m~~~~ 844 (997)
+.+.|..-|+...+.+
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999999999887765
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.1 Score=41.05 Aligned_cols=99 Identities=18% Similarity=0.072 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHH--HH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS---PELS--TF 957 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~--~~ 957 (997)
..+..+++.|.+.|+.++|++.|.++.+.......-...+..++......+++..+...++++...-.. ++.. .-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467889999999999999999999999876543445666777888888899999999888887653222 2211 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
..-+-.+...++|.+|-+.+=.+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 223333446789999988876543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.18 E-value=3 Score=46.49 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=106.5
Q ss_pred HHHcCChHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHH
Q 001911 210 CCRNGFWNVALEELGRLKD-FGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKE 288 (997)
Q Consensus 210 y~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 288 (997)
..-.|+++++.+....-.- ..+ | ..-.+.++.-+-+.|..+.|+.+-..-. .-.....++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 3446888888776652111 112 2 4457888888999999999987754322 23445667899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 001911 289 ALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGC 368 (997)
Q Consensus 289 A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 368 (997)
|.++.++ .++...|..|.....++|+++-|.+.|.+... |..|+-.|.-.|+.+.-..+.+.....|
T Consensus 337 A~~~a~~---~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 337 ALEIAKE---LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HHHHCCC---CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHh---cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 9998877 34788999999999999999999999987653 4566667778888888888887777766
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 369 YPSPRIFHSLIHAYCRSGDYSYAYKLLSKM 398 (997)
Q Consensus 369 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (997)
-++....++...|++++..+++.+-
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2566667777889998888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.93 Score=40.43 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 587 NIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
|..++..++-++++.|+++....+.+..-.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg 30 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG 30 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC
Confidence 456777788888888888888877776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.96 E-value=12 Score=39.31 Aligned_cols=137 Identities=14% Similarity=0.252 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHH
Q 001911 388 YSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKA 467 (997)
Q Consensus 388 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 467 (997)
+++...+++.|.+.|...+..+|-+.............. ....+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~-----------------------------------~~~~ra 122 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYD-----------------------------------EIIQRA 122 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHH-----------------------------------HHHHHH
Confidence 445667778888888887777666533222111111111 223445
Q ss_pred HHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC-C--HHH
Q 001911 468 YNVIREMMSKG---FIPDTSTYSKVIGYLCDASE----AEKAFLLFQEMKRNGLIPD-VYTYTILIDNFCKAG-L--IEQ 536 (997)
Q Consensus 468 ~~ll~~m~~~g---~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g-~--~~~ 536 (997)
..+++.|++.. ..++...+..++.. ...+ .+.+...|+.+.+.|+..+ ..-+.+-+-+++... . ...
T Consensus 123 ~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r 200 (297)
T PF13170_consen 123 KEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVAR 200 (297)
T ss_pred HHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHH
Confidence 55666665542 12344455555433 2222 3455666666666555432 222222222222211 1 346
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIH 561 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~ 561 (997)
+.++++.+.+.|+++....|..+.-
T Consensus 201 ~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 201 VIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHcCCccccccccHHHH
Confidence 6777777777777766666665443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.96 E-value=7.9 Score=42.29 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-------- 952 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------- 952 (997)
..+|..++..+.++|+++.|...+.++....+... ..+.+....+..+...|+..+|+..++..++.....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 45788888999999999999999999887542221 245566666777788899999999988887711111
Q ss_pred ------------------C-------HHHHHHHHHHHHhc------CCHHHHHHHHHHhhccCCccch
Q 001911 953 ------------------E-------LSTFVHLIKGLIRV------NKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 953 ------------------~-------~~~~~~l~~~y~~~------g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
+ ..++..++.-.... +..+++.+.++...+....|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 1 12445555555555 6677777888777776665543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.91 E-value=3 Score=40.57 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHhcCCCCCCcch---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 885 YRILIDHYIKA-GRLEVALELHEEMTSFSSNSAASR---NSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 885 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
...++.+|... .++++|+..|+.+.+...+-..+. ..+...+.--...++|.+|+.+|+++....
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666655 778888888888766432211111 122222222244577888888888877743
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.89 E-value=2.7 Score=41.15 Aligned_cols=141 Identities=18% Similarity=0.150 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--CCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHH
Q 001911 202 LLNVLIHKCCRNGFWNVALEELGRLKD--FGYKPTQ--AIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFA 277 (997)
Q Consensus 202 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 277 (997)
.++.-...|...|.++-|-..+++.-+ .++.|+. ..|..-+..+...++...|..++ ..+.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~---------------gk~s 157 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY---------------GKCS 157 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---------------HHhh
Confidence 456666667777777776666665432 2344442 23444444444444444443333 3344
Q ss_pred HHHHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHh---CCCCCcHHhHHHHHHH
Q 001911 278 YSLCKAGRWKEALELIEKEE-------FVPDT-VLYTKMISGLCEASLFEEAMDLLNRMRA---RSCIPNVVTFRILLCG 346 (997)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~t~~~ll~~ 346 (997)
+.|.+..++.+|-..|.+.+ ..++. ..|...|-.+.-..++..|...++.--. ..-.-|..+...||.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 56667777777766555411 11121 2234444455555566666666655221 1112234455555555
Q ss_pred HHhcCChhHHHH
Q 001911 347 CLRKRQLGRCKR 358 (997)
Q Consensus 347 ~~~~g~~~~a~~ 358 (997)
| ..|+.+++..
T Consensus 238 y-d~gD~E~~~k 248 (308)
T KOG1585|consen 238 Y-DEGDIEEIKK 248 (308)
T ss_pred h-ccCCHHHHHH
Confidence 4 3444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.86 E-value=3.8 Score=37.60 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcC
Q 001911 129 KLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECD 178 (997)
Q Consensus 129 ~l~~~~~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~ 178 (997)
.++++.|+..+...+.+....+|..++... + ..++..++.++.+|++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY 54 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence 456666666666666777777777776655 2 24555667777776654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.85 E-value=24 Score=41.36 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 001911 168 YNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLR 247 (997)
Q Consensus 168 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 247 (997)
...-+.++.+...+..|..+-..-.. +.+........-+.-+.+.|++++|...+-+-... +.|+ .++.-|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 33445556655556555554433211 22222223333344455567777777665544321 2222 23333444
Q ss_pred cCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh
Q 001911 248 ADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK 295 (997)
Q Consensus 248 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (997)
..+...-..+++.+.+.|+.. ..-...|+++|.+.++.+.-.++.++
T Consensus 410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhc
Confidence 444455555666666666532 22334566666666666666666554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.63 E-value=4.1 Score=37.69 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...|..-++ +...+..++|+..|..+...+... -|... ....+....
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~-------------------------------YpvLA-~mr~at~~a 105 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGS-------------------------------YPVLA-RMRAATLLA 105 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc-------------------------------chHHH-HHHHHHHHh
Confidence 344444443 456678899999998887765221 12222 122455677
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAAS-RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWE 971 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~ 971 (997)
..|+...|+..|.++..-.|-..+- ...-..-++.+...|-|+......+.+..- -+| ...+-..|+-+-.+.|++.
T Consensus 106 ~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 106 QKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred hcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchH
Confidence 8889999999999887654321111 222233455566778888887777775543 234 3567778888888999999
Q ss_pred HHHHHHHHhhc
Q 001911 972 EALQLSYSICH 982 (997)
Q Consensus 972 eA~~~~~~~~~ 982 (997)
+|.++|+.+.+
T Consensus 185 ~A~~~F~qia~ 195 (221)
T COG4649 185 KAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHc
Confidence 99999988766
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.19 Score=33.20 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
++..|+.+|.+.|+|++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.58 E-value=21 Score=40.16 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 485 TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDV-YTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY 563 (997)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 563 (997)
.|+.+|..-.....++.+..++..+... .|.. .-|.....-=.+.|..+.+.++|++-+.. ++.+...|...+.-+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3444443333333334444445444433 2222 22333333334455555566666555542 333444444433322
Q ss_pred H-hcCChhHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 564 L-KARKPSQANELFETMLSK-GC-IPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 564 ~-~~g~~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
. ..|+.+.....|+..... |. -.+...|...|..-...+++.....+++++.+
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2 235555555555554432 11 11223344444444455555555555555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.29 Score=31.79 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 922 TLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 922 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
|..++.++...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.05 E-value=3 Score=40.03 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=54.7
Q ss_pred chhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001911 196 KEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPT--QAIYNALIQVFLRADRLDTAYLVYREMLD 263 (997)
Q Consensus 196 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 263 (997)
.+.....+..++.-|++.|+.++|++.|.++++....+. ...+-.+++.....+++..+.........
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344456799999999999999999999999998765554 45677888888889999988887776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.4 Score=43.81 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=52.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHH
Q 001911 249 DRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEA-SLFEEAMDLLNR 327 (997)
Q Consensus 249 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~ 327 (997)
+.++--...+..|.+.|++.|..+|+.|++.+-|.. +.|..+.- ..+..- ..-+-++.++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk-------------fiP~nvfQ----~~F~HYP~QQ~C~I~vLeq 148 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK-------------FIPQNVFQ----KVFLHYPQQQNCAIKVLEQ 148 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc-------------cccHHHHH----HHHhhCchhhhHHHHHHHH
Confidence 344444555566667777666666666666543221 11211111 111111 123568889999
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcCC
Q 001911 328 MRARSCIPNVVTFRILLCGCLRKRQ 352 (997)
Q Consensus 328 m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (997)
|...|+.||..+-..+++++.+.+-
T Consensus 149 ME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 149 MEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHcCCCCchHHHHHHHHHhccccc
Confidence 9999999999999999998877664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.35 Score=31.98 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMT 909 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~ 909 (997)
|..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.38 Score=31.12 Aligned_cols=24 Identities=13% Similarity=0.193 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 924 LLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++.++...|++++|++.++++++
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333333444444444444444333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.35 E-value=34 Score=39.84 Aligned_cols=169 Identities=12% Similarity=0.153 Sum_probs=93.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHh
Q 001911 206 LIHKCCRNGFWNVALEELGRLKDFGYKP---TQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCK 282 (997)
Q Consensus 206 li~~y~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 282 (997)
=|....+.++|++|+..-.... |..| -.......+..+...|+++.|....-.|... +...|-.-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 3567788899999998776544 3334 2345677788888899999998888877643 23344444444445
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001911 283 AGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSM 362 (997)
Q Consensus 283 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (997)
.|+..+...++-..+...+...|-.++..+.. .+.. .|.+.... .+++...-..++++. ..++
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa~--~~q~--------- 498 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISAT--EPQI--------- 498 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhhc--chHH---------
Confidence 55544444443332223345567777766655 2222 22222221 122222222222211 1111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 363 MITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRK 400 (997)
Q Consensus 363 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (997)
.+. .-+...-..|+..|...+++..|..++-...+
T Consensus 499 -~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 499 -KQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred -Hhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 111 11222334489999999999999999877654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.41 Score=30.97 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 954 LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 954 ~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+.++..++.+|...|++++|++.+++.+...
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.8 Score=43.18 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001911 798 CLELLRQMSSKGCAPNFVTYRVLINHCCASGL 829 (997)
Q Consensus 798 A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 829 (997)
+++++++|...|+.||..+-..|++++.+.+-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 56667777777777777777777776665553
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.3 Score=38.95 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=59.3
Q ss_pred cchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchhh
Q 001911 917 ASRNSTLLLIESLSLAR---KIDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEE 991 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~ 991 (997)
+...+-..++|++.... +..+.+.+++++.+. -.|+ -...+.|+-++.+.++|+.++++++.+++...+|.+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 36667778899988764 477888899998873 3454 56788889999999999999999999999988887653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.22 E-value=35 Score=39.79 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HH----cCCHH
Q 001911 689 KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL---IK----VGKTE 761 (997)
Q Consensus 689 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~~ 761 (997)
+...|..++.+..+.| .|...--...+..+.. ++.+.+.-.+..+.+.|.+.....-..++... .. ..+..
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchh
Confidence 5566666666666665 2222222222222333 55555555555554443221111111111100 00 12455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV----GKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCA----SGLLDEA 833 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 833 (997)
.+...+.+....| +......|-..|..- .+++.|...+.....++ ....-.+...+.. .. +..|
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a 528 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLA 528 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHH
Confidence 5666666666554 444444554444332 34677777777776654 3333333333322 23 5677
Q ss_pred HHHHHHHHhc
Q 001911 834 HNLLEEMKQT 843 (997)
Q Consensus 834 ~~~~~~m~~~ 843 (997)
..++++..+.
T Consensus 529 ~~~~~~~~~~ 538 (552)
T KOG1550|consen 529 KRYYDQASEE 538 (552)
T ss_pred HHHHHHHHhc
Confidence 7777766553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.39 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.+|..++.+|...|++++|+..+++.++...+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57899999999999999999999998876543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=90.77 E-value=1.7 Score=42.99 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=65.1
Q ss_pred hcCCHHHHHHHHHHHhcC----CCCCCcchhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCC-----HHHH
Q 001911 894 KAGRLEVALELHEEMTSF----SSNSAASRNSTLLLIESLSLARK-------IDKAFELYVDMIRKDGSPE-----LSTF 957 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~-----~~~~ 957 (997)
..-.+++|++.|.-+.-. ......-...+..++|.|...|+ ...|...|+++.+..-.|. ....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 344667777766655421 11111235677788999988887 5677788888887654442 4578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.+|.++.+.|++++|.+.+.++.+.+-
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 8899999999999999999999987543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.26 E-value=78 Score=42.20 Aligned_cols=62 Identities=13% Similarity=-0.031 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
...|...+.....+|+++.|...+-++.+.. -+.++...+..+.+.|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-----LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-----cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3478888899999999999999988887754 4557777888888999999999999999864
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.21 E-value=33 Score=37.79 Aligned_cols=165 Identities=9% Similarity=0.055 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
|....-+++..+...-+..-..-+..+|.+-| .+...|..++..|... ..++-..+++++.+..+ .|...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33344445555555555555555555555532 2344455555555554 33444555555555421 12222223333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc-----hhhHHHHHHhHhHhHHHHHHHHHHhccC-CCCCChhhHHHHHHHHHhcC
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTH-----VAGYRKVIEGFSREFIVSLGLVNEMGKT-DSVPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g 896 (997)
.|.+ ++.+.+..+|.++.....|.. ...|..+.+...++...-..++..++.. |..-....+..+-+-|....
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 3333 555555555555544433311 1112222332223333333334444332 22222345556667888999
Q ss_pred CHHHHHHHHHHHhcCC
Q 001911 897 RLEVALELHEEMTSFS 912 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~ 912 (997)
++.+|++++.-+.+.+
T Consensus 220 N~~eai~Ilk~il~~d 235 (711)
T COG1747 220 NWTEAIRILKHILEHD 235 (711)
T ss_pred CHHHHHHHHHHHhhhc
Confidence 9999999999888765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.10 E-value=27 Score=36.56 Aligned_cols=161 Identities=12% Similarity=0.136 Sum_probs=86.6
Q ss_pred HhcCChHHHHHHHHHHHhcC--CCCCH------HHHHHHHHHHHhcC-CHHHHHHHHHHHHHc----C----CCCCH---
Q 001911 650 CKVHKVREAHDLLDAMSVVG--CEPNN------IVYDALIDGFCKVG-KLDEAQMVFSKMLEH----G----CNPNV--- 709 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~--~~~~~------~~~~~li~~~~~~g-~~~~A~~~~~~m~~~----g----~~p~~--- 709 (997)
.+.|+.+.|...+.+..... ..|+. ..|+.-.. ....+ +++.|...+++..+. + ..|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788888888888776532 23332 22333333 33445 888887777765543 1 12232
Q ss_pred --HhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 710 --YTYGSLIDRLFKDKRLD---LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA 784 (997)
Q Consensus 710 --~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (997)
.++..++.+|...+..+ +|..+++.+... .+..+..+-.-+..+.+.++.+++.+.+.+|... +.-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHH
Confidence 35556677777666543 455555555433 2222444445556666677888888888888765 2212233333
Q ss_pred HHHHH---hccCCHHHHHHHHHHHHhCCCCCCH
Q 001911 785 MIDGF---GKVGKVDKCLELLRQMSSKGCAPNF 814 (997)
Q Consensus 785 li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 814 (997)
.+..+ .. .....|...+..++..-+.|..
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 33333 33 2334555555555544344443
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.02 E-value=16 Score=33.95 Aligned_cols=140 Identities=12% Similarity=0.178 Sum_probs=84.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001911 236 AIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEA 315 (997)
Q Consensus 236 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~ 315 (997)
.+|...++ +...+..++|+.-|.++.+.|...-+. -.--.+.....+.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Ypv-------------------------------LA~mr~at~~a~k 107 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPV-------------------------------LARMRAATLLAQK 107 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchH-------------------------------HHHHHHHHHHhhc
Confidence 34544444 456677888888888888877542111 1111223345556
Q ss_pred CChHHHHHHHHHHHhCCCCCcHH-hHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 316 SLFEEAMDLLNRMRARSCIPNVV-TFRILLCG--CLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAY 392 (997)
Q Consensus 316 g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 392 (997)
|+..+|...|++.-.....|-.. -...|=.+ +...|.++....-.+-+...|-+.....-..|.-+-.|.|++..|.
T Consensus 108 gdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~ 187 (221)
T COG4649 108 GDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK 187 (221)
T ss_pred ccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHH
Confidence 66666666666665544344332 22222222 3456777777777776666665555666677777778889999999
Q ss_pred HHHHHHHHCCCCCCH
Q 001911 393 KLLSKMRKCGFQPGY 407 (997)
Q Consensus 393 ~~~~~m~~~g~~p~~ 407 (997)
+.|..+....-.|..
T Consensus 188 ~~F~qia~Da~aprn 202 (221)
T COG4649 188 SWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHHHccccCcHH
Confidence 988888764434433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.00 E-value=28 Score=36.71 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----RKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVN------ 968 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g------ 968 (997)
..|...+.++.... +......++..|... .++++|...|+++.+.|- ......++ .+...|
T Consensus 172 ~~A~~~~~~aa~~~-----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 172 KKALYLYRKAAELG-----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred HhHHHHHHHHHHhc-----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhh
Confidence 46777777776653 555666666666442 367888888888877653 45555565 555555
Q ss_pred ---------CHHHHHHHHHHhhccCCc
Q 001911 969 ---------KWEEALQLSYSICHTDIN 986 (997)
Q Consensus 969 ---------~~~eA~~~~~~~~~~~~~ 986 (997)
+...|...+......+..
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 666777777766665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.98 E-value=15 Score=40.45 Aligned_cols=65 Identities=25% Similarity=0.138 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..+-..|+.+..+.|+.+||++.++.+.+..|. ..+..+...|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-LDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-cchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334456888899999999999999999876542 23566888899999999999999999888543
|
The molecular function of this protein is uncertain. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.77 E-value=18 Score=36.70 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++.....|..+|.+.+|+++.+++++.+|- +...+..|+..+...|+--.|.+.|+++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL---~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL---SEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455667889999999999999999998765 888888899999999998888888887754
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.64 E-value=3.1 Score=42.59 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS-----KGCAPNFVTYR 818 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~ 818 (997)
..++..++..+...|+.+.+.+.++++.+.... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346677778888888888888888888887544 778888888888888888888888888765 47888777666
Q ss_pred HHHHH
Q 001911 819 VLINH 823 (997)
Q Consensus 819 ~l~~~ 823 (997)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55554
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.52 E-value=2 Score=44.08 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSF-SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
+|.-=++-|.+.+++..|...|.+.++. .++...+...|.+-+.+-...|++..|+.--.+++. +.|+ ..+++.-+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 6777889999999999999999997754 444456788888888888889999999999999998 8897 78999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 001911 962 KGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.++.+..++.+|..+.+...+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999888876544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.20 E-value=54 Score=38.80 Aligned_cols=220 Identities=17% Similarity=0.082 Sum_probs=90.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh---cC
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-CAPNFVTYRVLINHCCA---SG 828 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~l~~~~~~---~g 828 (997)
.+.-.|+++.|.+++-+ ..+...+.+.+...+.- .|-+.-.-..-..+.... -.|....+..|+..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~---~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAY---YGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHH---TT------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHH---cCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 34456888888887766 11122234433333322 222211111112232210 01122557778888775 45
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH--------------HHHHHHHHhccC-CCCC-Chh---hHHHHH
Q 001911 829 LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI--------------VSLGLVNEMGKT-DSVP-IVP---AYRILI 889 (997)
Q Consensus 829 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~--------------~a~~~~~~~~~~-~~~p-~~~---~~~~l~ 889 (997)
+..+|.+++--+.....+.....+...+....-... ..-+.+++-.+. +... ... .....+
T Consensus 342 d~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A 421 (613)
T PF04097_consen 342 DPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAA 421 (613)
T ss_dssp -HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHH
Confidence 778888888766543333333333333222211111 111223330000 0111 111 233445
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHH-HHHHHHHhcCC-----------HHHHHHHHHHHHHcC-----CCC
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL-LLIESLSLARK-----------IDKAFELYVDMIRKD-----GSP 952 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~-----------~~~A~~~~~~~~~~~-----~~p 952 (997)
.-+...|++++|+.+|+.+.+.+. -....+ .|+.+...... ...|..+.+.....+ ..+
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~~d~----vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEEYDK----VLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-HHH----HHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHCCCHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 667788999999999987765320 111222 22333322222 444444444433321 112
Q ss_pred C-HHHHHHHH-----HHHHhcCCHHHHHHHHHHhh
Q 001911 953 E-LSTFVHLI-----KGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 953 ~-~~~~~~l~-----~~y~~~g~~~eA~~~~~~~~ 981 (997)
. ..++..|. .-++..|+|++|++.++++.
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 1 23333333 34678999999999988753
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.66 E-value=59 Score=38.58 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=31.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCC-CCC-----HhhHHHHHHH--HHhcCCHHHHHHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGF-IPD-----TSTYSKVIGY--LCDASEAEKAFLLFQ 507 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~-~p~-----~~~~~~li~~--~~~~g~~~~A~~~~~ 507 (997)
.+-.+++..|.+.++.+..... .|+ ...+...+.+ +...|+.+.|...|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3567889899999988876421 111 1223333322 234589999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.60 E-value=48 Score=37.51 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHH
Q 001911 587 NIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMS 666 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 666 (997)
+..+|...++--...|+.+.+..+|++..-.. ..-...|-..+.-....|+.+-|..++....
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-----------------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-----------------ALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-----------------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 34566777777777788887777777764211 1111233333333334466666665555544
Q ss_pred hcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 667 VVGCE--PNNIVYDALIDGFCKVGKLDEAQMVFSKMLEH 703 (997)
Q Consensus 667 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 703 (997)
+..++ |....+.+.+ .-..|++..|..+++...+.
T Consensus 359 ~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE 395 (577)
T ss_pred hhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh
Confidence 43322 2222222222 12345666666666666554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.42 E-value=60 Score=38.39 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=41.9
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
Q 001911 452 SNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGL-IPDVYTYTILIDNFCK 530 (997)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~ 530 (997)
..+...+.-.|++|.|.+.+-+ ..+...|.+++...+..+.-.+-.+... ..+..... .|...-+..||..|++
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHH
Confidence 3455667778999999998877 2233456666665554443222111111 22221110 1111446777888876
Q ss_pred ---cCCHHHHHHHHHHHHHc
Q 001911 531 ---AGLIEQARNWFDEMVKE 547 (997)
Q Consensus 531 ---~g~~~~A~~~~~~m~~~ 547 (997)
..+..+|.++|--+...
T Consensus 337 ~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS
T ss_pred HHhccCHHHHHHHHHHHHHc
Confidence 35677787777766543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.32 E-value=0.23 Score=50.87 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEE 972 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~e 972 (997)
..|.+++|++.+..++.++|. ....|..-+.++.+.+++..|++-+..+++ ++|| ...|-.-+.+....|+|++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred cCcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 456778888888888777654 666666667777777788888888887777 6777 4456666666667788888
Q ss_pred HHHHHHHhhccCC
Q 001911 973 ALQLSYSICHTDI 985 (997)
Q Consensus 973 A~~~~~~~~~~~~ 985 (997)
|...+...+..++
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 8888777776655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.6 Score=40.76 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSL 931 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 931 (997)
++|+.-|++++..+|+ ...++..++.+|..
T Consensus 52 edAisK~eeAL~I~P~---~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 52 EDAISKFEEALKINPN---KHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHH-TT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc---hHHHHHHHHHHHHH
Confidence 3344444444445554 55555556666544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.98 E-value=0.75 Score=29.38 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
+..++.+|.+.|++++|.+.|+++.+..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34466666666667777776666666554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.86 E-value=48 Score=36.61 Aligned_cols=182 Identities=12% Similarity=0.120 Sum_probs=131.4
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
+.|-....+++..+.....+.-...+..+|...| -+-..|..++..|... ..+.-..+|+++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4455677788899998888888999999999876 5667888999999988 667888999999998765 66666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAP--N---VVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNVVTYTAMIDGF 789 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~ 789 (997)
...|.+ ++.+.+..+|.++...-++. + ...|..|...- ..+.+..+.+..+++.. |...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 776666 88899999999987653221 1 23566555422 25667777777777653 4444455666666778
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC 825 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~ 825 (997)
....++++|++++...++.. ..|...-..++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 88999999999999888763 334444444554443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.82 E-value=30 Score=34.25 Aligned_cols=211 Identities=14% Similarity=0.093 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 754 (997)
..|..-..+|....++++|...+.+..+- ...+...|. ....++.|.-+.+++.+. +--+..|+--..+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555555666666777776666555532 111111111 122334444444444432 11233445555556
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---CCC--CCHHHHHHHHHHHHhcCC
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK---GCA--PNFVTYRVLINHCCASGL 829 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~--p~~~~~~~l~~~~~~~g~ 829 (997)
..+|..+-|-..+++.-. ....-++++|+++|++...- +-. --...+....+.+.+..+
T Consensus 102 ~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 666666655555544332 12345666777777765542 100 013345556667777777
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 830 LDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV-PAYRILIDHYIKAGRLEVALELHEEM 908 (997)
Q Consensus 830 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 908 (997)
+++|-..+.+-.... .+. ...|+. ..+...+-.|....++..|...++.-
T Consensus 166 f~Eaa~a~lKe~~~~--------------------------~~~---~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAA--------------------------DKC---DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hhHHHHHHHHhhhHH--------------------------HHH---hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 777766665432100 000 011222 23444555566667888888888876
Q ss_pred hcCCCCC-CcchhhHHHHHHHHHhcCCHHHHHHH
Q 001911 909 TSFSSNS-AASRNSTLLLIESLSLARKIDKAFEL 941 (997)
Q Consensus 909 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 941 (997)
.+.+.-. ..+..+...|+.+| ..|+.|++..+
T Consensus 217 ~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 217 SQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred hcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 5543211 12444555555443 45666655443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.41 E-value=40 Score=35.23 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.2
Q ss_pred HHccCCHHHHHHHHHHHH
Q 001911 458 LCGAGKYEKAYNVIREMM 475 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~ 475 (997)
+.+.+++++|.++++-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 447899999999988654
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.39 E-value=4.8 Score=41.23 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR-----KDGSPELSTF 957 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 957 (997)
.++..++..+...|+.+.+.+.++++....|- +...|..++.+|...|+...|+..|+++.+ .|+.|.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34667888999999999999999999998876 889999999999999999999999999876 5677777666
Q ss_pred HHHHHH
Q 001911 958 VHLIKG 963 (997)
Q Consensus 958 ~~l~~~ 963 (997)
..+..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666665
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.6 Score=42.59 Aligned_cols=86 Identities=9% Similarity=0.055 Sum_probs=48.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN 968 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g 968 (997)
+.|....+++.|+..|.+++...|. ....|..-+.++.+..+++.+.+--.++++ +.|+ +...+.|+.......
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhc
Confidence 3444455556666666666555543 334444555555555666666555555555 5555 455556666666666
Q ss_pred CHHHHHHHHHHh
Q 001911 969 KWEEALQLSYSI 980 (997)
Q Consensus 969 ~~~eA~~~~~~~ 980 (997)
.+++|+..+.+.
T Consensus 93 ~~~eaI~~Lqra 104 (284)
T KOG4642|consen 93 GYDEAIKVLQRA 104 (284)
T ss_pred cccHHHHHHHHH
Confidence 666666655554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.06 E-value=4.5 Score=37.96 Aligned_cols=76 Identities=18% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCC-----------HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGR-----------LEVALELHEEMTSFSSNSAASRNSTLLLIESLS 930 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 930 (997)
+.+|+..+++... +.|+ ..++..++++|...+. +++|.+.|+++...+| +...|+.-+..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P----~ne~Y~ksLe~-- 122 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP----NNELYRKSLEM-- 122 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T----T-HHHHHHHHH--
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHH--
Confidence 5566666666653 3466 4688889999888763 4445555555555554 33444432222
Q ss_pred hcCCHHHHHHHHHHHHHcCC
Q 001911 931 LARKIDKAFELYVDMIRKDG 950 (997)
Q Consensus 931 ~~g~~~~A~~~~~~~~~~~~ 950 (997)
.++|-++..++.+.+.
T Consensus 123 ----~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 123 ----AAKAPELHMEIHKQGL 138 (186)
T ss_dssp ----HHTHHHHHHHHHHSSS
T ss_pred ----HHhhHHHHHHHHHHHh
Confidence 1345566666655443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.60 E-value=0.97 Score=29.18 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 923 LLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..++..+...|++++|.+.|+++++
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3334444444444444444444433
|
... |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.53 E-value=1.9 Score=34.03 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 929 LSLARKIDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
+....+.++|+..+++++++-..|. ..++-+|+.+|+..|++++.+++.-.-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888543332 346667888888888888888776543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.41 E-value=12 Score=36.17 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 001911 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD---GSPELSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~y~~~g~~~eA 973 (997)
.-++|.+.|-.+...+. .+...+-..+..|....+.++|+.++-++++.. -.+|+.++..|+.+|.+.|+++.|
T Consensus 121 ~d~~A~~~fL~~E~~~~---l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPE---LETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCC---CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33566666666665431 233333333445555777788888887777632 144577888888888888888877
Q ss_pred HH
Q 001911 974 LQ 975 (997)
Q Consensus 974 ~~ 975 (997)
.-
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 64
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.39 E-value=3.4 Score=42.04 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCch--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHh
Q 001911 160 GYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKE--VLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAI 237 (997)
Q Consensus 160 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~ 237 (997)
|..+++.+...++..-...++.+.+...+-.++....- .....-.+.++.+.+ -++++++.++..=...|+.||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 56677777777776666667777777777766653110 000112334444433 678899999999899999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001911 238 YNALIQVFLRADRLDTAYLVYREMLDAG 265 (997)
Q Consensus 238 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g 265 (997)
++.||+.+.+.+++..|..+.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.10 E-value=8.4 Score=37.85 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhc--------CCCCCC-------cchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTS--------FSSNSA-------ASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
++++..-++-+.+.|++.+|...|+.+.. ..|+.+ .....+.++.+++...|++-++++.-.+++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566677888899999999888887653 123321 223455567777788899999999999999
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 947 RKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 947 ~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
. ..|+ ..+|...+++....-+.++|..-+.+++..+..
T Consensus 258 ~--~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 R--HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred h--cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 8 5674 889999999999999999999988888776543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.99 E-value=27 Score=31.83 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=46.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH-HHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY-RILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~ 904 (997)
..++.+++..+++.|.-. .|..+-. ..-+..+...|+|++|+++
T Consensus 22 ~~~d~~D~e~lLdALrvL-----------------------------------rP~~~e~d~~dg~l~i~rg~w~eA~rv 66 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL-----------------------------------RPNLKELDMFDGWLLIARGNYDEAARI 66 (153)
T ss_pred hcCCHHHHHHHHHHHHHh-----------------------------------CCCccccchhHHHHHHHcCCHHHHHHH
Confidence 477888888888887653 3544322 2345678889999999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
+++..+..+. .+..-..++.++.-.|+
T Consensus 67 lr~l~~~~~~---~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 67 LRELLSSAGA---PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHhhhccCCC---chHHHHHHHHHHHhcCC
Confidence 9999876543 23344445555555565
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.59 E-value=31 Score=32.06 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=71.3
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH-HHHHH
Q 001911 815 VTYRVLINH---CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY-RILID 890 (997)
Q Consensus 815 ~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 890 (997)
.+...|+.. -...++.+++..+++.+... .|..+.. ..-+.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL-----------------------------------RP~~~e~~~~~~~ 52 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL-----------------------------------RPEFPELDLFDGW 52 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh-----------------------------------CCCchHHHHHHHH
Confidence 344444443 34677889999999887653 4554433 34557
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~ 970 (997)
.+...|+|.+|+++++.+....|+ .+..-..++.++...|+.+ =..+.+++.+.+-.|+. ..|.+.+......
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~~~~---~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEERAPG---FPYAKALLALCLYALGDPS-WRRYADEVLESGADPDA---RALVRALLARADL 125 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhccCCC---ChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCCChHH---HHHHHHHHHhccc
Confidence 788999999999999999887654 5555556666666667632 11223445664433332 3444444444444
Q ss_pred HHHH
Q 001911 971 EEAL 974 (997)
Q Consensus 971 ~eA~ 974 (997)
..|.
T Consensus 126 ~~a~ 129 (160)
T PF09613_consen 126 EPAH 129 (160)
T ss_pred cchh
Confidence 4443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.54 E-value=35 Score=32.70 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=61.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
+...+...|++++|...++...... .+ ..+. ..+-..|+......|..|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t--~D-e~lk----------------------------~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQT--KD-ENLK----------------------------ALAALRLARVQLQQKKAD 143 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccc--hh-HHHH----------------------------HHHHHHHHHHHHHhhhHH
Confidence 4456777888888888887665321 00 0000 001123667778888888
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
+|+..++...... -.......-+.++...|+-++|...|++.++.+
T Consensus 144 ~AL~~L~t~~~~~----w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEES----WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhcccccc----HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8888888776532 133344556777888888888888888888864
|
|
| >PLN02406 ethanolamine-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=85.46 E-value=0.1 Score=56.31 Aligned_cols=62 Identities=10% Similarity=-0.038 Sum_probs=48.6
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCC--CCCCCCCCCCCCCCcccchhhhccccCCCCCCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDP--DDPFSTGCSPVESVSSEDFAFLRDSLMNPSAADSVP 90 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (997)
-||.||.+.|++|+.+-. ++++|..+|+.....++ ...|+. .|+.+.+.+|++++....-.|
T Consensus 262 lfH~GHi~~L~~Ak~lGd--~LIVGV~sD~~v~~~KG~~~Pi~~~---------~ER~~~v~ack~VD~VVi~ap 325 (418)
T PLN02406 262 LFHAGHVEILRLARALGD--FLLVGIHTDQTVSAHRGAHRPIMNL---------HERSLSVLACRYVDEVIIGAP 325 (418)
T ss_pred cCCHHHHHHHHHHHHhCC--EEEEEEeccHHHHHhcCCCCCCCCH---------HHHHHHHhccCcccEEEeCCC
Confidence 489999999999999864 69999999986555552 345666 899999999998876544333
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.33 E-value=65 Score=35.64 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcC-CCC-CHHhHHHHHHHHHhcCCH-HHHHH
Q 001911 660 DLLDAMSVVGCEPNNIVYDALIDGFCKVG------KLDEAQMVFSKMLEHG-CNP-NVYTYGSLIDRLFKDKRL-DLALK 730 (997)
Q Consensus 660 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~-~~A~~ 730 (997)
.+|++.... -|+...|+..|..|...- .......+|+...+.+ ..+ ...-|..+.-.++..... +.|..
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 455554432 345555666666554321 3444555566555543 222 223444444444443332 22333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHH-HHH-HHHH
Q 001911 731 VISKMLEDSYAPNVVIYTEMIDGLIKVG-KTEE-AYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK-VDKC-LEL-LRQM 805 (997)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A-~~l-~~~m 805 (997)
+..+ ++..+...|-.-+....+.. +++- -.++|......-..+-...|+... .|+ .+.. +.+ +...
T Consensus 381 l~~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTE----LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHH----HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 3322 23345555555544444221 1111 122223333222223333344333 222 2221 112 2222
Q ss_pred HhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhh
Q 001911 806 SSKGCAPNFVTY-RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPA 884 (997)
Q Consensus 806 ~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 884 (997)
+.. ..|+..|+ +.+++-+...|-.++|.+.+....... | |+.+.
T Consensus 452 ~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p---------------------------------~sl~l 496 (568)
T KOG2396|consen 452 LSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-P---------------------------------FSLDL 496 (568)
T ss_pred HHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-C---------------------------------ccHHH
Confidence 222 34554443 356667777788888888887776532 2 23333
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 885 YRILIDHYI--KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 885 ~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
+..++..-. ..=+...+.+.|+.|....+ .++..|.....--...|..+.+-.+|.++.+. +.|
T Consensus 497 ~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg---~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt-l~~ 562 (568)
T KOG2396|consen 497 FRKMIQFEKEQESCNLANIREYYDRALREFG---ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT-LQG 562 (568)
T ss_pred HHHHHHHHhhHhhcCchHHHHHHHHHHHHhC---CChHHHHHHHHhhccCCCcccccHHHHHHHHh-hCh
Confidence 333332211 11126667777887776543 37778887776666778888888888877763 444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.1 Score=28.55 Aligned_cols=27 Identities=11% Similarity=0.317 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
++..++.+|.+.|++++|.+.++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888888888899999988887765
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.14 E-value=34 Score=32.20 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 001911 642 YGALIDGLCKVHKVREAHDLLDAM 665 (997)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~~~~~m 665 (997)
+..+++.+...|++-+|.++.+..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 344455555566666666655554
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.94 E-value=49 Score=33.90 Aligned_cols=160 Identities=17% Similarity=0.119 Sum_probs=72.0
Q ss_pred HhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCC----CCh-----------HHHHHHHHhccCchhhHHHHH
Q 001911 140 NLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHD----DRV-----------PEQFLREIGNEDKEVLGKLLN 204 (997)
Q Consensus 140 ~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~-----------a~~~~~~~~~~~~~~~~~~~~ 204 (997)
.+.+|.+..-++.+..+....|+--..++.-++-+.++.+. -+. |..-.+.| .+....++
T Consensus 41 ~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~pg~~~sddge~~t~~cvfda~e~~E~i-----~~~~qvf~ 115 (412)
T KOG2297|consen 41 DNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQPGGVKSDDGERHTSYCVFDAEEKREAI-----RNSVQVFQ 115 (412)
T ss_pred hcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCCCCccccccCccCceeEeecCchHHHH-----HHHHHHHH
Confidence 34566666666666665555554434444444444433210 001 11111111 12335678
Q ss_pred HHHHHHH--HcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHH-HHH
Q 001911 205 VLIHKCC--RNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAY-SLC 281 (997)
Q Consensus 205 ~li~~y~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~ 281 (997)
.+|+-|- ..+.-++..+++.-+. |+.++...-.+++.++.- ..|. ++..+++.+.+ -+.
T Consensus 116 KliRRykyLeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Tal~l---------------~nGt-~~~tvl~~L~~d~LV 177 (412)
T KOG2297|consen 116 KLIRRYKYLEKNFENEMRKFLLFLK--LFEENERKKLAMLTALLL---------------SNGT-LPATVLQSLLNDNLV 177 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHH---------------hCCC-CCHHHHHHHHHhhHH
Confidence 8887543 3333334444443333 466666665555554432 2243 33333443333 344
Q ss_pred hcCC-HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 001911 282 KAGR-WKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLL 325 (997)
Q Consensus 282 ~~g~-~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 325 (997)
+.|- ..=|.++|+..- .....|.+|+.+-+.+.-+.-+++|
T Consensus 178 keGi~l~F~~~lFk~~~---~Ek~i~~lis~Lrkg~md~rLmeff 219 (412)
T KOG2297|consen 178 KEGIALSFAVKLFKEWL---VEKDINDLISSLRKGKMDDRLMEFF 219 (412)
T ss_pred HHhHHHHHHHHHHHHHH---hhccHHHHHHHHHhcChHhHHHHhc
Confidence 4442 233555665521 2233456666665554444444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.88 E-value=6 Score=40.71 Aligned_cols=110 Identities=16% Similarity=0.043 Sum_probs=76.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 899 (997)
.+-|.++|.++||+..+...... .| +...+..-+.+|.+.+++.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~-----------------------------------~P~NpV~~~NRA~AYlk~K~FA 148 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV-----------------------------------YPHNPVYHINRALAYLKQKSFA 148 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc-----------------------------------CCCCccchhhHHHHHHHHHHHH
Confidence 34678999999999988775543 25 4455666778888888888
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA 973 (997)
.|+.=.+.+...+.. -..+|..-+.+-...|+.++|.+-++.+++ +.|+. ..|-..|.+..-..|+
T Consensus 149 ~AE~DC~~AiaLd~~---Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~--LEP~~---~ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 149 QAEEDCEAAIALDKL---YVKAYSRRMQARESLGNNMEAKKDCETVLA--LEPKN---IELKKSLARINSLRER 214 (536)
T ss_pred HHHHhHHHHHHhhHH---HHHHHHHHHHHHHHHhhHHHHHHhHHHHHh--hCccc---HHHHHHHHHhcchHhh
Confidence 888888887765421 334555555555667899999999999999 78872 3344444444444444
|
|
| >PLN02406 ethanolamine-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=84.59 E-value=0.14 Score=55.31 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=47.4
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAAD 87 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (997)
-||+||.+.|+||+.|.. ++++|..+|+..-..++.+.+|. .|+++.+++|++.+...+
T Consensus 64 llH~GH~~~L~qAk~lGd--~LIVGV~SDe~i~~~Kg~PV~~~---------eER~~~v~alk~VD~Vv~ 122 (418)
T PLN02406 64 MMHYGHANALRQARALGD--ELVVGVVSDEEIIANKGPPVTPM---------HERMIMVSGVKWVDEVIP 122 (418)
T ss_pred CCCHHHHHHHHHHHHhCC--EEEEEEecChhhhccCCCCcCCH---------HHHHHHHHhcCCCceEEe
Confidence 579999999999999986 59999999985544444456676 999999999998765433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.40 E-value=1.3 Score=30.18 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
++..|+..|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666655544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.23 E-value=2 Score=27.68 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.+|..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468999999999999999999999887643
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=66 Score=33.61 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHccCCh----HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh-----hHHHHHHHHHHHCCCCCC
Q 001911 301 DTVLYTKMISGLCEASLF----EEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQL-----GRCKRVLSMMITEGCYPS 371 (997)
Q Consensus 301 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~~~~ 371 (997)
|...-...+.++++.|+. .+++..+..+... .|+...-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444445555555542 3455555555333 24444444444444333211 112222222222 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 372 PRIFHSLIHAYCRSGDYSYAYKLLSKMRK 400 (997)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (997)
..+-...+.++.+.|+ .+|...+-.+.+
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~ 169 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK 169 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc
Confidence 4455555566655555 344444444443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.20 E-value=1.8 Score=30.00 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+|+++|.+.|+.+.|.++++.+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3566666666666666666666664
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.04 E-value=0.043 Score=50.91 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHccC
Q 001911 300 PDTVLYTKMISGLCEAS 316 (997)
Q Consensus 300 p~~~~~~~li~~~~~~g 316 (997)
++...|..+++.+...+
T Consensus 123 ~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 123 DDPELWEQLLKYCLDSK 139 (143)
T ss_dssp SSSHHHHHHHHHHCTST
T ss_pred CcHHHHHHHHHHHHhcC
Confidence 34555666655554443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.75 E-value=32 Score=35.57 Aligned_cols=98 Identities=18% Similarity=0.076 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCcchhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----H
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSS--NSAASRNS-TLLLIESLSLARKIDKAFELYVDMIRKDGSPE----L 954 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~ 954 (997)
..++...+..|++-|+.+.|.+.+.+-....- +...|... ...++..|....-+.+-++..+.+++.|..=| .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34667788899999999999999887655321 11222222 22344444555557777777778888774333 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
.+|..+...- .-++.+|-.++-...
T Consensus 184 KvY~Gly~ms--vR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 184 KVYQGLYCMS--VRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHH--HHhHHHHHHHHHHHc
Confidence 4555554443 346788877765443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.26 E-value=1.3e+02 Score=36.06 Aligned_cols=233 Identities=15% Similarity=0.051 Sum_probs=128.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCc---eeHHHHHH-HHHhcCChHHHHHHHHHHHhc--
Q 001911 595 IDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNV---YTYGALID-GLCKVHKVREAHDLLDAMSVV-- 668 (997)
Q Consensus 595 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~-~~~~~g~~~~A~~~~~~m~~~-- 668 (997)
+.......++++|..+..++...-..+ +..+.. ..++++-. .....|++++|.++-+.....
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~------------~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~ 489 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAP------------MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLP 489 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcC------------cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 445567788999998888876532100 011111 12344333 223468889999888877653
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH---HHH--HHHHhcCC--HHHHHHHHHHHHhC-
Q 001911 669 --GCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYG---SLI--DRLFKDKR--LDLALKVISKMLED- 738 (997)
Q Consensus 669 --~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~li--~~~~~~g~--~~~A~~~~~~~~~~- 738 (997)
-..+..+.+..+..+..-.|++++|..+.....+..-.-++..+. .+. ..+...|. ..+....|......
T Consensus 490 ~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~ 569 (894)
T COG2909 490 EAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH 569 (894)
T ss_pred cccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 223456677788888888999999999887776642222333332 222 23445663 22333333333222
Q ss_pred --CCC---CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHhCC-
Q 001911 739 --SYA---PNVVIYTEMIDGLIK-VGKTEEAYKVMLMMEEKGCYPNVVTYT--AMIDGFGKVGKVDKCLELLRQMSSKG- 809 (997)
Q Consensus 739 --~~~---~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g- 809 (997)
..+ +-..+...+..++.+ .+...+|..-+.-.......|-...+. .|+......|+.++|.....++....
T Consensus 570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 001 122344445555544 122233333333333333333222222 67778889999999999998887632
Q ss_pred ---CCCCHHHHHHHHH--HHHhcCCHHHHHHHHHH
Q 001911 810 ---CAPNFVTYRVLIN--HCCASGLLDEAHNLLEE 839 (997)
Q Consensus 810 ---~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 839 (997)
..++..+-...+. .....|+.++|...+.+
T Consensus 650 ~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 650 NGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2233333333333 33467888888888776
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.13 E-value=1.2e+02 Score=35.63 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=15.0
Q ss_pred hhhhhhcccccccccCCc
Q 001911 8 TLSSLIFSSKSFIFSHPN 25 (997)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (997)
+.|.-+++.+.|.||--|
T Consensus 41 ~is~~av~~~~~~~GtH~ 58 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHR 58 (846)
T ss_pred HHHHHHhhcceeeecccc
Confidence 567788999999999766
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.99 E-value=19 Score=40.30 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=104.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLEL 801 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 801 (997)
.|+++.|..++..+- -..-+.++..+.++|..++|+++- +|+.--- ....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rF---elal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQRF---ELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhhh---hhhhhcCcHHHHHHH
Confidence 455555554443321 234556677777778777776532 2332222 223577888888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC
Q 001911 802 LRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI 881 (997)
Q Consensus 802 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 881 (997)
..+.. +..-|..|.++....|++..|.+.|.+...
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------------------------------------- 694 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD--------------------------------------- 694 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------------------------------------
Confidence 66543 456688899999999999998888876543
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLI 961 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 961 (997)
|..|+-++...|+-+--..+-+...+... + +.--.+|...|+++++.+++.+ .+-.|+. ..++
T Consensus 695 ---~~~LlLl~t~~g~~~~l~~la~~~~~~g~----~----N~AF~~~~l~g~~~~C~~lLi~---t~r~peA---al~A 757 (794)
T KOG0276|consen 695 ---LGSLLLLYTSSGNAEGLAVLASLAKKQGK----N----NLAFLAYFLSGDYEECLELLIS---TQRLPEA---ALFA 757 (794)
T ss_pred ---hhhhhhhhhhcCChhHHHHHHHHHHhhcc----c----chHHHHHHHcCCHHHHHHHHHh---cCcCcHH---HHHH
Confidence 44566677777776655555555544321 1 2222345678999988877554 3345653 2445
Q ss_pred HHHHhcCCHHHHHHHHH
Q 001911 962 KGLIRVNKWEEALQLSY 978 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~ 978 (997)
+.|.- .+..+-..+++
T Consensus 758 rtYlp-s~vs~iv~~wk 773 (794)
T KOG0276|consen 758 RTYLP-SQVSRIVELWK 773 (794)
T ss_pred hhhCh-HHHHHHHHHHH
Confidence 55544 33444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=80.37 E-value=26 Score=32.46 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=56.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIR 966 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~ 966 (997)
++..-.+.++.+++..++.-+....|+ ....-..-++.+...|+|.+|+.+++.+.+. .|. +.+--.++.++..
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPE---FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHH
Confidence 334445778999999999999988876 5566666788889999999999999998774 353 4333444445544
Q ss_pred cCC
Q 001911 967 VNK 969 (997)
Q Consensus 967 ~g~ 969 (997)
.|+
T Consensus 91 ~~D 93 (160)
T PF09613_consen 91 LGD 93 (160)
T ss_pred cCC
Confidence 443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.03 E-value=2.5 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
+...|+.+|...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777888887777665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 96.0 bits (237), Expect = 3e-20
Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 4/211 (1%)
Query: 656 REAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715
+ A L D P L+ LD Q + + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 716 IDRLFKDKRLDLALKVI---SKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEE 772
+L LA ++ + + +Y ++ G + G +E V+ M+++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 773 KGCYPNVVTYTAMIDGFGKVGKVDKCLE-LLRQMSSKGCAPNFVTYRVLINHCCASGLLD 831
G P++++Y A + G+ + +E L QMS +G + VL++ + +L
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 832 EAHNLLEEMKQTYWPTHVAGYRKVIEGFSRE 862
H + K++ +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.0 bits (198), Expect = 1e-15
Identities = 30/296 (10%), Positives = 86/296 (29%), Gaps = 14/296 (4%)
Query: 465 EKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTIL 524
+ + G + K A ++ ++ + + Y +
Sbjct: 112 QAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171
Query: 525 IDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQA-NELFETMLSKG 583
+ + + G ++ + G P++++Y A + + + + E M +G
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231
Query: 584 CIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYG 643
+ L+ +A ++ ++ ++ ++L + + +Y
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYP 291
Query: 644 ALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGK------------LD 691
L L + + E ++ S V C + K L
Sbjct: 292 KLHLPLKTLQCLFEKQLHMELASRV-CVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALC 350
Query: 692 EAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIY 747
A LE ++ + L + + + + L+V+ + + +
Sbjct: 351 RALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLAR 406
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 4e-14
Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 7/203 (3%)
Query: 227 KDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRW 286
+ P + L+Q LD + A S L F +
Sbjct: 84 RQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQL 143
Query: 287 KEALELIE------KEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTF 340
A L+ ++ + +Y ++ G F+E + +L ++ P+++++
Sbjct: 144 PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203
Query: 341 RILLCGCLRK-RQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMR 399
L R+ + G +R L M EG L+ R+ +K+
Sbjct: 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263
Query: 400 KCGFQPGYVVYNILIGGICGNED 422
P V + L+ + +
Sbjct: 264 LPPQLPPPVNTSKLLRDVYAKDG 286
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.8 bits (169), Expect = 3e-12
Identities = 30/271 (11%), Positives = 65/271 (23%), Gaps = 45/271 (16%)
Query: 321 AMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIH 380
A L + R P LL K L + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 381 AYCRSGDYSYAYKLLSKMR---KCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYA 437
+ A+ LL + +YN ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG--------------------- 174
Query: 438 EMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDAS 497
G +++ V+ + G PD +Y+ + +
Sbjct: 175 --------------------WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 498 EAEKAFL-LFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTY 556
+ ++M + GL +L+ +A +++ P V
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 557 TALIHAYLKARKPSQANELFETMLSKGCIPN 587
+ L+ +L + + C+
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 3e-09
Identities = 32/219 (14%), Positives = 62/219 (28%), Gaps = 16/219 (7%)
Query: 203 LNVLIHKCCRNGFWNVALEELGRLKDFGYK---PTQAIYNALIQVFLRADRLDTAYLVYR 259
L C +A L K T +YNA++ + R V
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 260 EMLDAGFSMDGFTLGCFAYSLCKAGRWKEALE----LIEKEEFVPDTVLYTKMISGLCEA 315
+ DAG + D + + + + +E + +E + ++S A
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 316 SLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSP--- 372
++ + + +P V LL K ++ + T C
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309
Query: 373 ------RIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQP 405
S+ S + +A K L +R +
Sbjct: 310 MELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKA 348
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.6 bits (106), Expect = 9e-05
Identities = 6/97 (6%), Positives = 26/97 (26%), Gaps = 1/97 (1%)
Query: 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL-LLIESLSLARKIDKA 938
+ +L +A L ++ + +
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184
Query: 939 FELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQ 975
+ + +P+L ++ ++ + R ++ ++
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 2e-14
Identities = 66/428 (15%), Positives = 127/428 (29%), Gaps = 117/428 (27%)
Query: 617 NAEISDVDIYFR----------VLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMS 666
+ E + ++ V + +CK+ L H + + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLR 66
Query: 667 VVGC---EPNNIVYDALIDGFCKVGKLDEAQMVF--SKMLEHGCNPNVYT--YGSLIDRL 719
+ + +V F V ++ F S + P++ T Y DRL
Sbjct: 67 LFWTLLSKQEEMVQK-----F--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 720 FKD---------KRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMM 770
+ D RL LK+ +LE A NV+I G++ GKT A V L
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-----GVLGSGKTWVALDVCLSY 174
Query: 771 EEKGCYPNVVTYTAMIDGFGKVGKVDKCLE----LLRQMSSKGCAPNFVTYRVLINHCCA 826
+ + + + ++ + LE LL Q+ + + + + +
Sbjct: 175 KVQCKMDFKIFW---LN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---- 226
Query: 827 SGLLDEAHNLLEEMKQTYWPT------HVAGYRKVIEGF---SREFIVSLGLVNEMGKTD 877
+ L +K + +V K F + + + TD
Sbjct: 227 --IHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTT----RFKQVTD 279
Query: 878 SVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDK 937
+ I +DH+ L + E SL
Sbjct: 280 FLSAATTTHISLDHHSMT--------LTPD-------------------EVKSL------ 306
Query: 938 AFELYVDMIRKD-------GSPELSTFVHLIKGLIR--VNKWEEALQLSY----SICHTD 984
Y+D +D +P + +I IR + W+ ++ +I +
Sbjct: 307 -LLKYLDCRPQDLPREVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 985 INWLQEEE 992
+N L+ E
Sbjct: 363 LNVLEPAE 370
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 91/658 (13%), Positives = 193/658 (29%), Gaps = 194/658 (29%)
Query: 228 DFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWK 287
DF Q Y ++ VF A + +++ D + K
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDN---FDCKDVQD-------MPKSILS---------K 48
Query: 288 EALELIEKEEFVPDTVLYTKMISGLCEAS-------LFEEAMD-----LLNRMRARSCIP 335
E ++ I D V T + + EE + L++ ++ P
Sbjct: 49 EEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 336 NVVT-----FRILLCG---CLRKRQLGRCKRVLSMMITEGCY---PSPRIF-H------- 376
+++T R L K + R + L + + P+ +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGK 163
Query: 377 -SLIHAYCRSGDYSYAYKLLSKM---------RKCGFQPGYVV------YNILIGGICGN 420
+ C S YK+ KM + C P V+ +
Sbjct: 164 TWVALDVCLS------YKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSR 216
Query: 421 EDLPASDVFE-----------LAEKAYAEMLNAGVVLNKINVSN------F-VQC----- 457
D ++ L K Y L +VL NV N F + C
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLL--NVQNAKAWNAFNLSCKILLT 271
Query: 458 -----LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRN 512
+ ++ + S PD E + L + + +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD---------------EVKSLLLKYLDCRPQ 316
Query: 513 GLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQA 572
L +V T + + + W D CD T +I + L +P++
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCD----KLTTIIESSLNVLEPAEY 371
Query: 573 NELFE--TMLSKGC-IPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFR- 628
++F+ ++ IP I+ L I+ + + + V+ +
Sbjct: 372 RKMFDRLSVFPPSAHIPTIL----L-------------SLIWFDVIKSDVMVVVNKLHKY 414
Query: 629 -VLDNNCKEPNVYTYGALIDGLCKVHKVREAHD-LLDAMSVVGCEPNNIVYDALIDG--F 684
+++ KE + ++ K+ H ++D ++ ++ + +D +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 685 CKVG----KLDEAQMV--FSKM----------LEHGCNPNVYTYGSLIDRLFKDKRLDLA 728
+G ++ + + F + + H + GS+++ L L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTL-----QQL- 527
Query: 729 LKVISKMLEDSYAPNVVIYTEMIDGLIK-VGKTEEAY---------KVMLMMEEKGCY 776
K + N Y +++ ++ + K EE ++ LM E++ +
Sbjct: 528 -----KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 2e-12
Identities = 82/613 (13%), Positives = 162/613 (26%), Gaps = 224/613 (36%)
Query: 13 IFSSKSF--IFSHPNQFSRQNFLPAVTRFIC-TSPPDDLHGLFDPDDPFSTGCSPVESVS 69
I S + I + S L F S +++ F VE V
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRL-----FWTLLSKQEEMVQKF------------VEEVL 87
Query: 70 SEDFAFLRDSLMNPSAADSVP--NFDAGRCSNDAVMIANTLLTNNDGFGG---NTQKFLR 124
++ FL + S+ + R + L +N F + +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQR---------DRLYNDNQVFAKYNVSRLQPYL 138
Query: 125 QFREKLSE------------------SLVVNVLN---LIKKPELGVKFFLWAGRQIGYSH 163
+ R+ L E + ++V + K + + F W + +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--F-WLN--LKNCN 193
Query: 164 TPPVYNALVEIME-------------CDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKC 210
+P ++E+++ DH + + + + L +LL ++
Sbjct: 194 SP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-----HSIQAELRRLLKSKPYEN 245
Query: 211 C----RNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGF 266
C N N F + QV D L A + +
Sbjct: 246 CLLVLLN-VQNAKA-----WNAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDH--- 293
Query: 267 SMDGFT-----------LGC--------------FAYSLCKA------GRW--------- 286
T L C S+ W
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 287 ------KEALELIEKEE----------FVPDTVLYTKMISGLCEASLFEEAMDLLNRMRA 330
+ +L ++E E F P + T ++S + + + M ++N++
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 331 RSCI---PNVVTFRI------LLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHA 381
S + P T I L + L R ++ Y P+
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHR--SIVD------HYNIPK-------T 458
Query: 382 YCRSG-------DYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEK 434
+ Y Y++ G+ + NI + L
Sbjct: 459 FDSDDLIPPYLDQYFYSHI------------GHHLKNIE-----------HPERMTLFRM 495
Query: 435 AYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMS-KGFIPDTS-TYSKVIGY 492
+ L+ + KI + G+ N ++++ K +I D Y +++
Sbjct: 496 VF---LDFRFLEQKIRHDSTAWNASGS-----ILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 493 LCDASEAEKAFLL 505
+ D FL
Sbjct: 548 ILD-------FLP 553
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 4e-09
Identities = 84/606 (13%), Positives = 166/606 (27%), Gaps = 175/606 (28%)
Query: 462 GKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTY 521
G+++ Y I + F+ + D + K+ L +E+ + D +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCK--------DVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 522 T-ILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY-LKARKPSQANELFETM 579
T L + + V+E N Y L+ + R+PS ++
Sbjct: 64 TLRLFWTLL-----SKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 580 LSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNV 639
+ N V F ++ R + Y +++ + L NV
Sbjct: 116 RDRLYNDNQV-FAKY--------NVSRL-QPYLKLR------------QALLELRPAKNV 153
Query: 640 YTYGALIDGLCK---VHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMV 696
G L G K V ++ + M I + + + + V
Sbjct: 154 LIDGVL--GSGKTWVALDVCLSYKVQCKM------DFKIFW-------LNLKNCNSPETV 198
Query: 697 FSKMLEHGCNPNVYTYGSLID-----------------RLFKDKRLDLALKVISKMLEDS 739
+ML+ + S D RL K K + L V L +
Sbjct: 199 L-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNV 253
Query: 740 YAPNV---------VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790
++ T + + L +T +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKSLLL 308
Query: 791 KVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQT--YWPTH 848
K + +L R++ P R L ++ E + + T W H
Sbjct: 309 KYLDC-RPQDLPREV--LTTNP-----RRL-------SIIAE---SIRDGLATWDNWK-H 349
Query: 849 VAGYR--KVIEGF--------SREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898
V + +IE R+ L + S I P L
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-----SAHI-PT-----------ILL 392
Query: 899 EVA-LELHEE-----MTSFSSNSAASRNSTLLLIE----SLSLARKIDKAFEL------- 941
+ ++ + + S + I L L K++ + L
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 942 YVDMIRKDGSPELST-------FVHL---IKGLIRVNKWEEALQLSYSICHTDINWLQEE 991
Y ++ + S +L + H+ +K + + + + D +L+++
Sbjct: 453 Y-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-----FRMVFLDFRFLEQK 506
Query: 992 ERSSST 997
R ST
Sbjct: 507 IRHDST 512
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 26/221 (11%), Positives = 65/221 (29%), Gaps = 27/221 (12%)
Query: 530 KAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIV 589
++A N ++ + N++ Y A K + + ++ +L+ I +
Sbjct: 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL 135
Query: 590 TFTALIDGHCKAGDIERACRIYAR---------------------MKGNAEISDVDIYFR 628
+ + +A I+ I+ + + ++ I+
Sbjct: 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA-FKIFEL 194
Query: 629 VLDNNCKEPNVYT-YGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGF-CK 686
L P Y + L + + R + + + E + ++ + F
Sbjct: 195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA-FESN 253
Query: 687 VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDL 727
+G L V + Y + + K +DL
Sbjct: 254 IGDLASILKVEKRRFT--AFREEYEGKETALLVDRYKFMDL 292
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 997 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.68 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.98 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.87 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.74 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.7 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.66 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.61 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.59 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.59 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.55 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.53 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.52 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.48 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.47 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.34 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.28 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.28 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.22 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.1 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.0 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.97 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.96 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.93 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.91 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.86 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.79 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.76 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.59 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.56 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.28 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.2 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.05 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.02 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.99 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.9 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.72 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.49 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.36 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.17 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.08 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.06 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.85 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.51 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.08 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.07 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.99 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.96 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.84 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.82 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.82 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.71 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.55 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.27 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.89 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.59 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.13 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.76 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.61 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.4 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.04 | |
| 3hl4_A | 236 | Choline-phosphate cytidylyltransferase A; rossmann | 90.87 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.79 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.34 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.16 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.99 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.95 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.89 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.62 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.28 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.84 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.9 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.77 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.7 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.81 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.57 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.55 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.19 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=376.47 Aligned_cols=472 Identities=10% Similarity=-0.044 Sum_probs=304.7
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHH
Q 001911 281 CKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVL 360 (997)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (997)
.+.|.+..+...+...+ .+++..|+.++..+.+.|++++|+.+|++|... .||..++..++.+|.+.|++++|..++
T Consensus 64 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS-LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCccCCCCCccccch-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34555555666655533 468889999999999999999999999999854 578899999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHH
Q 001911 361 SMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEML 440 (997)
Q Consensus 361 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~ 440 (997)
+.+... ++++.+++.++.+|++.|++++|.++|+++. |+... ..+..
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~----~~~~~---------------------- 187 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRKD----EKNAN---------------------- 187 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC---------------------------------
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Ccccc----ccccc----------------------
Confidence 988654 6789999999999999999999999998532 22100 00000
Q ss_pred HcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001911 441 NAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYT 520 (997)
Q Consensus 441 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 520 (997)
+.+. ...|..++..+|+.++.+|.+.|++++|.+.|++|.+.++. +...
T Consensus 188 -------------------~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 188 -------------------KLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp ----------------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred -------------------cccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 0000 11234456667777777777777777777777777765432 4555
Q ss_pred HHHHHHHHHHcCCHHHHH--HH-HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 521 YTILIDNFCKAGLIEQAR--NW-FDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDG 597 (997)
Q Consensus 521 ~~~li~~~~~~g~~~~A~--~~-~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 597 (997)
+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 555554443332222211 11 444444444445556666677777777788888888777654 4677777777888
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 001911 598 HCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVY 677 (997)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 677 (997)
|.+.|++++|..+|+++.... +.+..+++.++.+|.+.|++++|.++++++.... +.+..+|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-----------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-----------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 888888888888887776543 4466677777777777777777777777777554 5567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 678 DALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV 757 (997)
Q Consensus 678 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 757 (997)
+.++..|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 77777777777777777777777765432 55566666666666777777777766666543 33556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHH
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAPN--FVTYRVLINHCCASGLLD 831 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~ 831 (997)
|++++|.++|+++.+... .+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|+++
T Consensus 455 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp TCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 666666666666665422 25566666666666666666666666666543 33444 445555555555555555
Q ss_pred HHHHHHHHHHh
Q 001911 832 EAHNLLEEMKQ 842 (997)
Q Consensus 832 ~A~~~~~~m~~ 842 (997)
+|..+++++.+
T Consensus 534 ~A~~~~~~~~~ 544 (597)
T 2xpi_A 534 AAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=366.22 Aligned_cols=523 Identities=10% Similarity=-0.007 Sum_probs=313.5
Q ss_pred HHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHH
Q 001911 175 MECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTA 254 (997)
Q Consensus 175 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 254 (997)
+...+....+...+..++. .....|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.++.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 3444555555555544432 2234577777777777888888877777764 346667777777777777777777
Q ss_pred HHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 001911 255 YLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCI 334 (997)
Q Consensus 255 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 334 (997)
..+|+.+... +++..+++.++.+|++.|++++|+++|++ +.
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------------------------------~~----- 177 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGE--------------------------------TN----- 177 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCS--------------------------------SC-----
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhc--------------------------------cC-----
Confidence 7777766432 34444555555555555555555555543 11
Q ss_pred CcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 001911 335 PNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPG-YVVYNIL 413 (997)
Q Consensus 335 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 413 (997)
|+.. ...++.+.++. ..|.+++..+|+.++.+|.+.|++++|.++|++|.+.+ |+ ...+..+
T Consensus 178 ~~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 240 (597)
T 2xpi_A 178 PFRK----DEKNANKLLMQ-----------DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQL 240 (597)
T ss_dssp TTC--------------CC-----------CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred Cccc----ccccccccccc-----------ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHH
Confidence 1100 00001111111 12344556666677777777777777777777766543 33 3333333
Q ss_pred HHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHH-HHHHHHCCCCCCHhhHHHHHHH
Q 001911 414 IGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNV-IREMMSKGFIPDTSTYSKVIGY 492 (997)
Q Consensus 414 i~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l-l~~m~~~g~~p~~~~~~~li~~ 492 (997)
...+...+. +..+.+..+ +..+...+..+...+|+.++..
T Consensus 241 ~~~~~~~~~---------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 241 VSNHLLTAD---------------------------------------EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHTTCSCHH---------------------------------------HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHhhcccch---------------------------------------hHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 333221100 000111111 2223332223333445555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 001911 493 LCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQA 572 (997)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 572 (997)
|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|+.+|+++.+.+.. +..+++.++.++.+.|++++|
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHH
Confidence 66666677777777666544 356677777777777777777777777777665433 566677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc
Q 001911 573 NELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV 652 (997)
Q Consensus 573 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 652 (997)
.++++++.+.. +.+..+++.++..|.+.|++++|.++|+++.... +.+..+|+.++.+|.+.
T Consensus 359 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 359 YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-----------------PQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHc
Confidence 77777776543 4456667777777777777777777777766532 44556777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 001911 653 HKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVI 732 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 732 (997)
|++++|.++|+++...+ +.+..+|+.++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|.++|
T Consensus 421 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp TCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777777776654 456677777777777777777777777777766533 6677777777777777777777777
Q ss_pred HHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 733 SKMLED----SYAPN--VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 733 ~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777654 44565 6677888888888888888888888877754 3367778888888888888888888888887
Q ss_pred hCCCCC-CHHHHHHHHHHH
Q 001911 807 SKGCAP-NFVTYRVLINHC 824 (997)
Q Consensus 807 ~~g~~p-~~~~~~~l~~~~ 824 (997)
+. .| +...+..+..+|
T Consensus 578 ~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 578 AI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HH--CTTCHHHHHHHHHTT
T ss_pred hc--CCCChHHHHHHHHHH
Confidence 75 45 456666665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-26 Score=259.76 Aligned_cols=382 Identities=16% Similarity=0.112 Sum_probs=314.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001911 524 LIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGD 603 (997)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 603 (997)
+...+.+.|++++|++.+.++.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 345566778888888888887776432 45566667777778888888888888777654 5577788888888888888
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 001911 604 IERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDG 683 (997)
Q Consensus 604 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 683 (997)
+++|...|+++.... +.+...|..+..++.+.|++++|.+.|+++.... +.+...+..+...
T Consensus 83 ~~~A~~~~~~al~~~-----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-----------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 888888888887642 4455678888888888888888888888888765 4455667778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 684 FCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEA 763 (997)
Q Consensus 684 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 763 (997)
+...|++++|...|+++.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 88889999999999988887543 67788888888999999999999999988764 34567888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 764 YKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 764 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
...++++.+... .+..++..+...+...|++++|++.|+++.+. .| +..+|..++.++.+.|++++|...++++.+
T Consensus 223 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 223 VAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999887633 26788899999999999999999999999986 45 578899999999999999999999999876
Q ss_pred cCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhH
Q 001911 843 TYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNST 922 (997)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 922 (997)
.. +++...+..++..+...|++++|++.++++.+..|. +..++
T Consensus 300 ~~----------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 342 (388)
T 1w3b_A 300 LC----------------------------------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAH 342 (388)
T ss_dssp HC----------------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred hC----------------------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHH
Confidence 43 345567888999999999999999999999988765 78899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 923 LLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
..++.++...|++++|+..|+++++ ..|+ ..++..++.+|.+.|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999998 6786 8899999999888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-25 Score=250.54 Aligned_cols=379 Identities=16% Similarity=0.086 Sum_probs=237.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 001911 493 LCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQA 572 (997)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 572 (997)
+.+.|++++|...++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3444555555555555444321 134444445555555555555555555555442 22445555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc
Q 001911 573 NELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV 652 (997)
Q Consensus 573 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 652 (997)
.+.|+++.+.. +.+..+|..+..++...|++++|...|+++.... +.+...+..+...+...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-----------------PDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-----------------TTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCcHHHHHHHHHHHHHc
Confidence 55555555442 2334455555666666666666666666555432 23334455555566666
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 001911 653 HKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVI 732 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 732 (997)
|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+
T Consensus 149 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666553 344566666677777777777777777777666533 4556666667777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 001911 733 SKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP 812 (997)
Q Consensus 733 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 812 (997)
++..+.. +.+..++..+...|.+.|++++|.+.|+++.+.... +..+|..+...+.+.|++++|++.|+++.+.. +.
T Consensus 227 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 227 LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 7766543 234566777777777777777777777777765322 56677777777777777777777777777652 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+..++..+..++...|++++|...++++.+.. +.+...+..++.+|
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF----------------------------------PEFAAAHSNLASVL 349 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC----------------------------------TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------------------CCcHHHHHHHHHHH
Confidence 67777777777788888888887777776532 22345677777888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR 933 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 933 (997)
.+.|++++|++.++++.+..|. +..++..++..+...|
T Consensus 350 ~~~g~~~~A~~~~~~a~~~~p~---~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhhCCC---CHHHHHhHHHHHHHcc
Confidence 8888888888888888777664 6677777777666554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=271.22 Aligned_cols=204 Identities=19% Similarity=0.248 Sum_probs=172.9
Q ss_pred HHHHHHHHhccCchh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---------hhH
Q 001911 184 PEQFLREIGNEDKEV-LGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADR---------LDT 253 (997)
Q Consensus 184 a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~ 253 (997)
++.+.+++.+.+... ...+++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 334445554443222 2246888899999999999999999999999999999999999999987664 577
Q ss_pred HHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 001911 254 AYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSC 333 (997)
Q Consensus 254 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (997)
|..+|++|.+.|+ .||.++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 89 A~~lf~~M~~~G~--------------------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 89 GFDIFKQMIVDKV--------------------------------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp HHHHHHHHHHTTC--------------------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC--------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 8888888888775 78899999999999999999999999999999999
Q ss_pred CCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001911 334 IPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNIL 413 (997)
Q Consensus 334 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 413 (997)
.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..||+++
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q 001911 414 IGGICG 419 (997)
Q Consensus 414 i~~~~~ 419 (997)
+..|+.
T Consensus 217 ~~~F~s 222 (501)
T 4g26_A 217 EEWFKS 222 (501)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 998875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=268.68 Aligned_cols=215 Identities=16% Similarity=0.257 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHH
Q 001911 355 RCKRVLSMMITEGCYPSP-RIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAE 433 (997)
Q Consensus 355 ~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~ 433 (997)
.+..+...+.+.+..+.+ .+++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+++..+....
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~-------- 79 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE-------- 79 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS--------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh--------
Confidence 344555666666666554 45888999999999999999999999999999999999999999876554211
Q ss_pred HHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001911 434 KAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNG 513 (997)
Q Consensus 434 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 513 (997)
..+.+.+++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|
T Consensus 80 ------------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g 135 (501)
T 4g26_A 80 ------------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG 135 (501)
T ss_dssp ------------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred ------------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 12456689999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 514 LIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTA 593 (997)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 593 (997)
+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.
T Consensus 136 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 136 IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 001911 594 LIDGHCKA 601 (997)
Q Consensus 594 li~~~~~~ 601 (997)
++..++..
T Consensus 216 l~~~F~s~ 223 (501)
T 4g26_A 216 IEEWFKSE 223 (501)
T ss_dssp HHHHHHSH
T ss_pred HHHHHhcC
Confidence 99988763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-19 Score=207.46 Aligned_cols=614 Identities=16% Similarity=0.166 Sum_probs=389.8
Q ss_pred CChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHH---------------------
Q 001911 143 KKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGK--------------------- 201 (997)
Q Consensus 143 ~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------- 201 (997)
.+|+.|..|-.-+....+ .....+.+++++...+..+++..++-++-+.+.+....
T Consensus 524 ~~P~~~~~fa~~L~~~~~---p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail 600 (1630)
T 1xi4_A 524 ISPDQGQQFAQMLVQDEE---PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL 600 (1630)
T ss_pred cChHHHHHHHHHHhcCCC---CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHH
Confidence 467777777666655533 23346778888888888888888887765544321000
Q ss_pred --------HHHHHHHHHHHcCChHHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 001911 202 --------LLNVLIHKCCRNGFWNVALEELGRLKDF--------GYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDA- 264 (997)
Q Consensus 202 --------~~~~li~~y~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~- 264 (997)
=+..+...|-++|.++.|++.+..+.+. .+.|+ .|..-+ ..=..+.+...+++|...
T Consensus 601 ~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~-----~l~~~f-g~l~~~~s~~~l~~~l~~n 674 (1630)
T 1xi4_A 601 GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPE-----WLVNYF-GSLSVEDSLECLRAMLSAN 674 (1630)
T ss_pred hcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHH-----HHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 1567778899999999999988754321 12221 111111 112234444444444421
Q ss_pred ---------------------------------------------CCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 001911 265 ---------------------------------------------GFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFV 299 (997)
Q Consensus 265 ---------------------------------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 299 (997)
.+..|+.+..-.|.+.++.|++.|.+++.++..+.
T Consensus 675 ~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y 754 (1630)
T 1xi4_A 675 IRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCY 754 (1630)
T ss_pred HhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCC
Confidence 23457777888899999999999988876542111
Q ss_pred C------------------------------CHHHH------HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH-----
Q 001911 300 P------------------------------DTVLY------TKMISGLCEASLFEEAMDLLNRMRARSCIPNVV----- 338 (997)
Q Consensus 300 p------------------------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----- 338 (997)
. +.+.| ...|.+|.+.-++..+=.+...+.+..|..|..
T Consensus 755 ~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~ 834 (1630)
T 1xi4_A 755 DPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLIL 834 (1630)
T ss_pred CHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHH
Confidence 1 11111 123444444444444434443343333332221
Q ss_pred ------hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHCC
Q 001911 339 ------TFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAY----------KLLSKMRKCG 402 (997)
Q Consensus 339 ------t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~----------~~~~~m~~~g 402 (997)
...-|+..+-+.+++.--..+++.-...| ..++.++|+|+..|...++-.+.. -+=+-..++
T Consensus 835 ~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~r- 912 (1630)
T 1xi4_A 835 VVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKR- 912 (1630)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhc-
Confidence 12223333334444445555677777777 567888888888887544322210 000001110
Q ss_pred CCCCH--HH-------------------HHHHHHhhhcCCCCCCchHHHHHH--------HHHHHHHHcC--ccccccch
Q 001911 403 FQPGY--VV-------------------YNILIGGICGNEDLPASDVFELAE--------KAYAEMLNAG--VVLNKINV 451 (997)
Q Consensus 403 ~~p~~--~~-------------------~~~li~~~~~~~~~~~~~~~~~a~--------~~~~~m~~~g--~~~~~~~~ 451 (997)
.|.. +. |...-+-+... ...++|..++ .+.+...... -..++.-+
T Consensus 913 -Dp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeV 988 (1630)
T 1xi4_A 913 -DPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEV 988 (1630)
T ss_pred -CcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHh
Confidence 1110 00 00010001111 1122333322 1222111111 23455567
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001911 452 SNFVQCLCGAGKYEKAYNVIREMMSKGF--IPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFC 529 (997)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~ll~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 529 (997)
+..+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..+........ + ..-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 7888999999999999999999984421 12334455566666665 455666655555422 2 334777788
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 530 KAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACR 609 (997)
Q Consensus 530 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 609 (997)
..|.+++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+..++...|++++|..
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999998631 2222333332 678999999998865 357889999999999999999999
Q ss_pred HHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 001911 610 IYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGK 689 (997)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 689 (997)
.|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.++
T Consensus 1127 sYiKA----------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1127 SYIKA----------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHhc----------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 99653 345567789999999999999999999877654 343344458999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 690 LDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLM 769 (997)
Q Consensus 690 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 769 (997)
+++...+. + .++...|..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88644432 2 346677778999999999999999999884 3789999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001911 770 MEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTY 844 (997)
Q Consensus 770 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 844 (997)
.. +..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++......
T Consensus 1247 A~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1247 AN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred hC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 73 678999999999999999998886554 23456677789999999999999999998876543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-22 Score=236.51 Aligned_cols=448 Identities=11% Similarity=-0.009 Sum_probs=284.2
Q ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 001911 451 VSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCK 530 (997)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 530 (997)
+......+.+.|++++|+..|++++... |+...|..+..++...|++++|...++.+.+.++ .+..++..+..++.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHH
Confidence 3445556666666666666666666653 5666666666666666666666666666665532 245566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001911 531 AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRI 610 (997)
Q Consensus 531 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 610 (997)
.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 6666666666666666542 233344444444443333333333333333332222222221111111111111111111
Q ss_pred HHHHHhccCCCchhHHHHHhccCCCCC---------CceeHHHHHHHHHh---cCChHHHHHHHHHHHh-----cCC---
Q 001911 611 YARMKGNAEISDVDIYFRVLDNNCKEP---------NVYTYGALIDGLCK---VHKVREAHDLLDAMSV-----VGC--- 670 (997)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--- 670 (997)
...+ ......+ +...+......+.. .|++++|...|+++.. ..-
T Consensus 165 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 165 ASFF----------------GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp HHHH----------------TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHH----------------hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 1111 0000111 12333333344443 7889999999988877 311
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001911 671 -----EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV 745 (997)
Q Consensus 671 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 745 (997)
+.+..++..+...+...|++++|...++++.+..+. ..++..+...+...|++++|...++++.+.. +.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 305 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS 305 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH
Confidence 223556777888888889999999999888887644 7778888888888899999999988888764 44667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC 825 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~ 825 (997)
.+..+...|...|++++|...++++.+.... +...+..+...+...|++++|+..++++.+.. +.+..++..+..++.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH
Confidence 7888888888889999999999888876433 56778888888888899999999988888752 225677888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC----hhhHHHHHHHHHh---cCCH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI----VPAYRILIDHYIK---AGRL 898 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~ 898 (997)
..|++++|...++++.... +. .+. ...+..++.+|.. .|++
T Consensus 384 ~~~~~~~A~~~~~~a~~~~------------------------------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELE------------------------------NK--LDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHH------------------------------HT--SSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred HCCCHHHHHHHHHHHHHhh------------------------------hc--cchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 8899999988888876531 00 121 2377888888888 8999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
++|++.++++....|. +..++..++.++...|++++|...++++++ ..|+ ..++..+
T Consensus 432 ~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~ 489 (514)
T 2gw1_A 432 IEATNLLEKASKLDPR---SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHHHHH
Confidence 9999999998887765 677888888888888999999999999888 5676 3444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-22 Score=234.54 Aligned_cols=451 Identities=12% Similarity=0.024 Sum_probs=316.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 484 STYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY 563 (997)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 563 (997)
..+......+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|+..++++.+.++. +..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHH
Confidence 346667788899999999999999999874 68999999999999999999999999999988643 678999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-chhH--HHHHhccCCCCCCce
Q 001911 564 LKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEIS-DVDI--YFRVLDNNCKEPNVY 640 (997)
Q Consensus 564 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~ 640 (997)
.+.|++++|...|+++...+ +++......++..+........+.+.+..+......+ .... ...........|+..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999886 4455555555555555444444444443221111000 0000 000000011123322
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----c--CC-----
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK---VGKLDEAQMVFSKMLE-----H--GC----- 705 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~--g~----- 705 (997)
.. ..+........... ...-+.+...+......+.. .|++++|...|+++.+ . .+
T Consensus 163 ~~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 163 SM----ASFFGIFKPELTFA------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp HH----HHHHTTSCCCCCCS------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred HH----HHHHhhcCHHHHHH------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 22 22222222111110 01113344555555555554 8999999999999988 4 11
Q ss_pred -CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 706 -NPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA 784 (997)
Q Consensus 706 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (997)
+.+..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+... .+...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHH
Confidence 1235678888999999999999999999999865 3388899999999999999999999999998643 36778999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhH--h
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSR--E 862 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~--~ 862 (997)
+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+.. |.....+..+...+.. +
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999863 2267889999999999999999999999987653 2222222222111111 1
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh---cCCHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL---ARKIDKAF 939 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~ 939 (997)
+..|.. .+++|++.. ... +........+..++.++.. .|++++|.
T Consensus 388 ~~~A~~----------------------------~~~~a~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 388 FDKALK----------------------------QYDLAIELE---NKL-DGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHH----------------------------HHHHHHHHH---HTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHH----------------------------HHHHHHHhh---hcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 111111 223333322 221 1111235588999999999 99999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 940 ELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 940 ~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
..++++++ ..|+ ..++..++.+|.+.|++++|...++++.......
T Consensus 436 ~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 436 NLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 99999999 5675 8899999999999999999999999998876543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-21 Score=223.14 Aligned_cols=386 Identities=12% Similarity=0.055 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001911 501 KAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETML 580 (997)
Q Consensus 501 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 580 (997)
.+...+..+.... +.+...+..+...+.+.|++++|+.+|+++.+..+ .+..+|..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444432 23566777777777777777777777777776533 356677777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCc---eeHHHHHHHHHhcCChHH
Q 001911 581 SKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNV---YTYGALIDGLCKVHKVRE 657 (997)
Q Consensus 581 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 657 (997)
+.+ +.+..++..+...+...|++++|...|+++.... +.+. ..+..++..+..
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~------ 143 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----------------PSENEEKEAQSQLIKSDEM------ 143 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----------------CCHHHHHHHHHHHHHHHHH------
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------CCChhhHHHHHHHHHHHHH------
Confidence 654 4456667777777777777777777777776542 2333 444444333110
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 658 AHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLE 737 (997)
Q Consensus 658 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 737 (997)
..+..+...+...|++++|+..|+++.+..+. +..++..++..|.+.|++++|...|+++.+
T Consensus 144 -----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 205 (450)
T 2y4t_A 144 -----------------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASK 205 (450)
T ss_dssp -----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01122233455566666666666666665432 555666666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHhccCCHHHHHHHHHHH
Q 001911 738 DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAM------------IDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 738 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m 805 (997)
.. +.+..++..++..|...|++++|...|+++.+... .+...+..+ +..+.+.|++++|+..|+++
T Consensus 206 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 206 LK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 34456666666666666666666666666665422 133333333 77788888889998888888
Q ss_pred HhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 806 SSKGCAPN-----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 806 ~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
.+. .|+ ..++..++.++.+.|++++|...++++.+.. +.
T Consensus 284 l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------------p~ 327 (450)
T 2y4t_A 284 MKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME----------------------------------PD 327 (450)
T ss_dssp HHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------------------TT
T ss_pred Hhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------cc
Confidence 875 454 4477888888888999999988888876532 23
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH------------HHhcC-----CHHHHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES------------LSLAR-----KIDKAFELYV 943 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~ 943 (997)
+...|..++.+|...|++++|++.++++.+..|. +..++..++.+ |...| +.+++.+.|+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~ 404 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN---DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR 404 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHH
Confidence 4567888888888999999999999998887765 66777777643 33334 5677888888
Q ss_pred H-HHHcCCCCC----H-------HHHHHHHHHHHhcCCHHHH
Q 001911 944 D-MIRKDGSPE----L-------STFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 944 ~-~~~~~~~p~----~-------~~~~~l~~~y~~~g~~~eA 973 (997)
+ ..+ ..|| . ..+..+..+|-..|+.+.+
T Consensus 405 ~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 405 KLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7 455 4454 1 2556677777777665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-21 Score=221.51 Aligned_cols=329 Identities=16% Similarity=0.097 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001911 588 IVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSV 667 (997)
Q Consensus 588 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 667 (997)
...+..++..+.+.|++++|..+|+++.... +.+..++..+..+|...|++++|.+.|+++..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444555555555555555555544331 33444455555555555555555555555554
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHH------------HHHHHHHhcCCHHHHHHHH
Q 001911 668 VGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNV---YTYG------------SLIDRLFKDKRLDLALKVI 732 (997)
Q Consensus 668 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~------------~li~~~~~~g~~~~A~~~~ 732 (997)
.+ +.+..++..+...|.+.|++++|...|+++.+..+. +. ..+. .+...+...|++++|+..|
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 43 334455555555555555555555555555554321 22 2333 3345588899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 001911 733 SKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP 812 (997)
Q Consensus 733 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 812 (997)
+++.+.. +.+...+..++.+|.+.|++++|.+.|+++.+.. +.+..++..++..|...|++++|+..|+++... .|
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p 242 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQ 242 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9998764 4578889999999999999999999999998763 347899999999999999999999999999975 45
Q ss_pred -CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 813 -NFVTYRVL------------INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 813 -~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
+...+..+ +..|...|++++|..+++++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------------- 287 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----------------------------------- 287 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------------
Confidence 45555544 889999999999999999987643
Q ss_pred CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 001911 880 PI-----VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE- 953 (997)
Q Consensus 880 p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 953 (997)
|+ ...+..++.++.+.|++++|++.++++.+..|. +..+|..++.+|...|++++|...++++++ ..|+
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD---NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 33 236788999999999999999999999987765 789999999999999999999999999999 7786
Q ss_pred HHHHHHHHHH------------HHhcC-----CHHHHHHHHHH
Q 001911 954 LSTFVHLIKG------------LIRVN-----KWEEALQLSYS 979 (997)
Q Consensus 954 ~~~~~~l~~~------------y~~~g-----~~~eA~~~~~~ 979 (997)
..++..++.+ |...| +.+++.+.+++
T Consensus 363 ~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 363 QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 7888888844 55555 55666777765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-21 Score=225.24 Aligned_cols=257 Identities=13% Similarity=0.047 Sum_probs=151.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 654 KVREAHDLLDAMSVVGCEPNN-------IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 654 ~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
++++|..+++++.... +.+. .++..+...+...|++++|...++++.+.. |+..++..+...+...|+++
T Consensus 217 ~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence 5666666666666543 2222 234555556666666666766666666653 33556666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 727 LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
+|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|++.++++.
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666543 334556666666666666666666666666654322 44556666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHH
Q 001911 807 SKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYR 886 (997)
Q Consensus 807 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 886 (997)
+.. +.+...+..+..++...|++++|...++++.+... ...........+.
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE----------------------------VQEKIHVGIGPLI 422 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HCSSCSSTTHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC----------------------------cchhhHHHHHHHH
Confidence 642 22455666666666666666666666666543210 0000111122244
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 887 ILIDHYIKA----------GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 887 ~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++.+|... |++++|+..++++.+..|. +..++..++.++...|++++|.+.|+++++
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR---SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666 6677777777766666554 556666666666666777777777776666
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-16 Score=189.76 Aligned_cols=608 Identities=14% Similarity=0.116 Sum_probs=401.5
Q ss_pred CCCHHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHH---------------hc
Q 001911 129 KLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREI---------------GN 193 (997)
Q Consensus 129 ~l~~~~~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~---------------~~ 193 (997)
.+.+..++.++-..+..+ ..|-|++....++-|+.+....|.+.++.|+..+.+.+.++= +-
T Consensus 692 ~lg~~~li~~fe~~~~~e---gl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl 768 (1630)
T 1xi4_A 692 QLSTQSLIELFESFKSFE---GLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 768 (1630)
T ss_pred hcCHHHHHHHHHHhcchh---hHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCC
Confidence 445555555555544333 346678888889999999999999999999988887766542 11
Q ss_pred cCchhh--------------HHH----HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-----------hHHHHHHH
Q 001911 194 EDKEVL--------------GKL----LNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQA-----------IYNALIQV 244 (997)
Q Consensus 194 ~~~~~~--------------~~~----~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~~ 244 (997)
.++-+. .-+ ....|..|++.-++..+=.+...+.+.++..+.. ...-|+..
T Consensus 769 ~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~ 848 (1630)
T 1xi4_A 769 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848 (1630)
T ss_pred CCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHH
Confidence 111110 000 1344556666555555555555555544333211 12334444
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 001911 245 FLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDL 324 (997)
Q Consensus 245 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 324 (997)
+-+.+++..-..+++.-+..| ..++.++|++...|...++-.|. ++.+. ..-=..++.-||...++.-|.-.
T Consensus 849 ~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~--fL~~n-----~~yd~~~vgkyce~rDp~la~ia 920 (1630)
T 1xi4_A 849 VEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER--FLREN-----PYYDSRVVGKYCEKRDPHLACVA 920 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH--Hhhcc-----CcccHHHHHHHHHhcCcchHHHH
Confidence 556666777777788888877 67889999999999987765543 22111 01111223334444444333333
Q ss_pred HHH-----------------------HHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 001911 325 LNR-----------------------MRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGC--YPSPRIFHSLI 379 (997)
Q Consensus 325 ~~~-----------------------m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li 379 (997)
+++ +.++ -|..-|..++.- +-+--.++.+......+ ..++.--...+
T Consensus 921 y~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~v 992 (1630)
T 1xi4_A 921 YERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTV 992 (1630)
T ss_pred hcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHH
Confidence 322 0111 123333333311 11112233333332221 12333445678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHH
Q 001911 380 HAYCRSGDYSYAYKLLSKMRKCGF--QPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQC 457 (997)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 457 (997)
..|...|.+.+|++++++..-.+- .-+...-+.++..-.+.. ........... +......+...
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD-------~~Rv~eyI~kL-------d~~d~~eIA~I 1058 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKAD-------RTRVMEYINRL-------DNYDAPDIANI 1058 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhC-------hhhHHHHHHHh-------hhccHHHHHHH
Confidence 889999999999999999984311 122334444554433321 12222222221 22224457778
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 889999999999999962 11122233332 678899999998865 2578899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGN 617 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 617 (997)
+..|.+. -|...|..++..+.+.|++++|.+.|...++.. +++...+.++.+|++.+++++..... .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999664 378889999999999999999999999888764 33333445889999999988644332 1
Q ss_pred cCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 618 AEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVF 697 (997)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 697 (997)
.++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+
T Consensus 1192 ------------------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1192 ------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred ------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 345566778999999999999999999985 37899999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 698 SKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP 777 (997)
Q Consensus 698 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 777 (997)
++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-
T Consensus 1245 rKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-ra 1312 (1630)
T 1xi4_A 1245 RKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RA 1312 (1630)
T ss_pred HHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hh
Confidence 987 367899999999999999999998776532 356677799999999999999999998887543 22
Q ss_pred CHHHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 778 NVVTYTAMIDGFGK--VGKVDKCLELLRQMSSKGCAP------NFVTYRVLINHCCASGLLDEAHNLL 837 (997)
Q Consensus 778 ~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~~~ 837 (997)
....|+-|...|.+ -++..+++++|..-.+ ++| +...|.-++..|.+.|+++.|...+
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34456555555554 4667777777765443 233 5778999999999999999998544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=220.99 Aligned_cols=421 Identities=14% Similarity=0.041 Sum_probs=273.5
Q ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 001911 451 VSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCK 530 (997)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 530 (997)
+......+.+.|++++|++.|++++... +.+...+..+..++...|++++|+..++++.+.++ .+..++..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence 4456677889999999999999998864 45677888889999999999999999999988753 378889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCCHHHHHHHH---------
Q 001911 531 AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSK------GCIPNIVTFTALI--------- 595 (997)
Q Consensus 531 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li--------- 595 (997)
.|++++|+..|+.+ .. .|+ .....+..+...+...+|...++.+... ...|+........
T Consensus 106 ~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 99999999999633 32 222 2222344555566667888888887553 1223333222111
Q ss_pred -----------------HHHHH-----cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCC--------ceeHHHH
Q 001911 596 -----------------DGHCK-----AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPN--------VYTYGAL 645 (997)
Q Consensus 596 -----------------~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l 645 (997)
..+.. .+++..+...+.+... .+.+... ..|+ ..++..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~--------~~~~~l~---~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD--------MYHSLLS---ANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH--------HHHHHHC-----CCCHHHHHHHHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------HHHHHHH---HCCCcchhhHHHHHHHHHH
Confidence 11111 1333444444444432 2222222 2232 2245566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 001911 646 IDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRL 725 (997)
Q Consensus 646 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 725 (997)
...+...|++++|.+.++++.... |+..++..+...+...|++++|...++++.+..+. +..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 667778888888888888888764 45777888888888888888888888888887643 677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001911 726 DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 805 (997)
++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|++.|+++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888888887754 3356678888888888888888888888888763 335667788888888888888888888887
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhh
Q 001911 806 SSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPA 884 (997)
Q Consensus 806 ~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 884 (997)
.+.. |+ ...+..+... ...|.-+. ...... .......++..|...+.+..... +.+...
T Consensus 405 ~~~~--~~~~~~~~~~~~~------~~~a~~~~-~~~~~~----------~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~ 464 (537)
T 3fp2_A 405 KRLE--EVQEKIHVGIGPL------IGKATILA-RQSSQD----------PTQLDEEKFNAAIKLLTKACELD-PRSEQA 464 (537)
T ss_dssp HHHH--HHCSSCSSTTHHH------HHHHHHHH-HHHTC--------------CCHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHcC--CcchhhHHHHHHH------HHHHHHHH-HHhhcc----------chhhhHhHHHHHHHHHHHHHHhC-CCCHHH
Confidence 7642 21 1111111100 00011111 110000 00000135666777777765443 234557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
+..++.+|...|++++|.+.++++.+..|.
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 788888888888888888888888877654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-18 Score=191.03 Aligned_cols=320 Identities=15% Similarity=0.101 Sum_probs=240.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHH
Q 001911 587 NIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMS 666 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 666 (997)
++..+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 64 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-----------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566777788888888888888888887653 4566778888888888999999999998888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHH------------HHHHHhcCCHHHHHHHH
Q 001911 667 VVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN--PNVYTYGSL------------IDRLFKDKRLDLALKVI 732 (997)
Q Consensus 667 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~A~~~~ 732 (997)
... +.+...+..+...+...|++++|...++++.+..+. .+...+..+ ...+...|++++|...+
T Consensus 65 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 65 ALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 765 456778888888888899999999999988886431 133344443 46777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 001911 733 SKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP 812 (997)
Q Consensus 733 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 812 (997)
+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++..+. .|
T Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~ 219 (359)
T 3ieg_A 144 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQ 219 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cc
Confidence 8887753 4566778888888888888888888888888763 336778888888888888888888888888875 34
Q ss_pred -CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 813 -NFVTYR------------VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 813 -~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
+...+. .+...+...|++++|...++++....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------------------- 264 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----------------------------------- 264 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------------
Confidence 333332 23566778888888888888776543
Q ss_pred CCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 001911 880 PIV-----PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE- 953 (997)
Q Consensus 880 p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 953 (997)
|+. ..+..++.+|...|++++|++.++++.+..|. +..++..++.++...|++++|...|+++++ ..|+
T Consensus 265 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 339 (359)
T 3ieg_A 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD---NVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNEND 339 (359)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 221 23556778888888888888888888877654 677888888888888888888888888888 6675
Q ss_pred HHHHHHHHHHHHhcC
Q 001911 954 LSTFVHLIKGLIRVN 968 (997)
Q Consensus 954 ~~~~~~l~~~y~~~g 968 (997)
..++..|..++...+
T Consensus 340 ~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 340 QQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 667777777765443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-18 Score=187.77 Aligned_cols=317 Identities=15% Similarity=0.065 Sum_probs=260.8
Q ss_pred ceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 001911 639 VYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDR 718 (997)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 718 (997)
+..+..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...++++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3456778888999999999999999999876 567889999999999999999999999999998644 67889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001911 719 LFKDKRLDLALKVISKMLEDSYA---PNVVIYTEM------------IDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYT 783 (997)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 783 (997)
+...|++++|...++++.+.. + .+...+..+ ...+...|++++|.+.++++.+... .+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999864 2 244455554 5788999999999999999998743 4788899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhH
Q 001911 784 AMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREF 863 (997)
Q Consensus 784 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 863 (997)
.+...+...|++++|+..++++.+.. +.+..++..+..++...|++++|...+++..+.. |.....+....
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~------- 229 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK------- 229 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH-------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH-------
Confidence 99999999999999999999999863 3378899999999999999999999999987653 22111111000
Q ss_pred HHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch----hhHHHHHHHHHhcCCHHHHH
Q 001911 864 IVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR----NSTLLLIESLSLARKIDKAF 939 (997)
Q Consensus 864 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 939 (997)
.+ ........++..+...|++++|++.++++.+..|. +. ..+..++.++...|++++|+
T Consensus 230 --------~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 230 --------QV------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS---VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp --------HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------HH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 00 01112334578899999999999999999987764 33 34667889999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 940 ELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 940 ~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
..++++++ ..| +..++..++.+|...|++++|...++++.+.....
T Consensus 293 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 293 RICSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 99999999 567 48899999999999999999999999998876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-16 Score=182.46 Aligned_cols=380 Identities=12% Similarity=0.027 Sum_probs=270.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 001911 503 FLLFQEMKRNGLIPDVYTYTILIDNFCK----AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLK----ARKPSQANE 574 (997)
Q Consensus 503 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~ 574 (997)
...+....+. .+...+..+...|.. .+++++|+.+|++..+.| +...+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3444444443 255666666666666 677777777777777653 55666667777776 677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHH
Q 001911 575 LFETMLSKGCIPNIVTFTALIDGHCK----AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLC 650 (997)
Q Consensus 575 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 650 (997)
.|++..+.| +...+..+...|.. .+++++|...|++.... .+...+..|...|.
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------------------GRDSGQQSMGDAYF 158 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHH
Confidence 777777654 55666666666766 67777777777776653 23445556666666
Q ss_pred h----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-
Q 001911 651 K----VHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK----VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK- 721 (997)
Q Consensus 651 ~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~- 721 (997)
. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|..
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 232 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG 232 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 5 677888888888877654 56677777777777 778888888888888765 55666777777775
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--
Q 001911 722 ---DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV-- 792 (997)
Q Consensus 722 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-- 792 (997)
.+++++|...|++..+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|...
T Consensus 233 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 233 IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAE 306 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBT
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCC
Confidence 778888888888887754 45566667777776 788888888888887654 556666777777666
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHH
Q 001911 793 ---GKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG---LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVS 866 (997)
Q Consensus 793 ---g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a 866 (997)
+++++|+.+|++..+.| +...+..+...|...| ++++|..++++..+.
T Consensus 307 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----------------------- 360 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----------------------- 360 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----------------------
T ss_pred CCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----------------------
Confidence 78888888888888764 4566777777777656 677888888776552
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHH
Q 001911 867 LGLVNEMGKTDSVPIVPAYRILIDHYIK----AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKA 938 (997)
Q Consensus 867 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 938 (997)
.+...+..|+.+|.. .+++++|++.|+++.+.. +...+..|+..|.. .+++++|
T Consensus 361 -------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 361 -------------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-----LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 234567778888888 788899999998888753 57788888888887 7888999
Q ss_pred HHHHHHHHHcCCC-C-CHHHHHHHHHHHHh
Q 001911 939 FELYVDMIRKDGS-P-ELSTFVHLIKGLIR 966 (997)
Q Consensus 939 ~~~~~~~~~~~~~-p-~~~~~~~l~~~y~~ 966 (997)
...|+++.+.+.. | +..+...|+.++.+
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999988886533 3 35566677776554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-16 Score=179.65 Aligned_cols=365 Identities=13% Similarity=0.047 Sum_probs=308.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLK----ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCK----AGDIERAC 608 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 608 (997)
+...+....+. .+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45556665554 377788888888888 899999999999998875 67788888899998 89999999
Q ss_pred HHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001911 609 RIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCK----VHKVREAHDLLDAMSVVGCEPNNIVYDALIDGF 684 (997)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 684 (997)
..|++.... .+...+..|...|.. .+++++|.+.|++....| +...+..|...|
T Consensus 100 ~~~~~a~~~-------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 157 (490)
T 2xm6_A 100 IWYKKAALK-------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHHHT-------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHC-------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 999998763 245567778888887 789999999999998865 567788888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 685 CK----VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK----DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 685 ~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYF 231 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 87 789999999999999975 67888888888888 899999999999999865 56778888888886
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 001911 757 ----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK----VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCAS- 827 (997)
Q Consensus 757 ----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~- 827 (997)
.+++++|.++|++..+.| +...+..+...|.. .+++++|+++|++..+.| +...+..+...|...
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence 789999999999998864 56677777777777 899999999999998864 566778888888887
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC---CHHH
Q 001911 828 ----GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG---RLEV 900 (997)
Q Consensus 828 ----g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~ 900 (997)
+++++|..++++..+.+ +...+..|+.+|...| ++++
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQG------------------------------------DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhcC------------------------------------CHHHHHHHHHHHHhCCCcccHHH
Confidence 89999999999876632 3456778999988866 8999
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 001911 901 ALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR----VNKWEE 972 (997)
Q Consensus 901 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~----~g~~~e 972 (997)
|++.|+++.+.. +...+..|+..|.. .+++++|+..|+++.+.+ ++.++..|+.+|.. .+++++
T Consensus 350 A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 350 AVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999863 78899999999998 899999999999999954 57889999999999 899999
Q ss_pred HHHHHHHhhccCC
Q 001911 973 ALQLSYSICHTDI 985 (997)
Q Consensus 973 A~~~~~~~~~~~~ 985 (997)
|..++++..+.+.
T Consensus 422 A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 422 AWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-17 Score=180.52 Aligned_cols=300 Identities=9% Similarity=-0.006 Sum_probs=252.1
Q ss_pred CCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 001911 635 KEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGS 714 (997)
Q Consensus 635 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 714 (997)
.+.+...+..+...+...|++++|.++|+++.... +.+...+..++..+...|++++|...++++.+..+. +...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 35667778889999999999999999999998876 455667777888899999999999999999998654 6778889
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 715 LIDRLFKDK-RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 715 li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
+...+...| ++++|...++++.+.. +.+...|..+...+...|++++|.+.++++.+.... +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999864 446778999999999999999999999999986433 5667777999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 794 KVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
++++|++.++++.+.. +.+...+..+...+...|++++|...++++..... ..
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~ 226 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK--------------------------AI 226 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT--------------------------TT
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh--------------------------hc
Confidence 9999999999999863 33688999999999999999999999998765310 00
Q ss_pred ccC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 874 GKT-DSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 874 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
... ..+.....+..++.+|...|++++|++.++++.+..|. +..++..++.++...|++++|...++++++ ..|
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p 301 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRR 301 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCS
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCC
Confidence 000 11223457889999999999999999999999988765 788999999999999999999999999998 678
Q ss_pred C-HHHHHHHHHHHH-hcCCH
Q 001911 953 E-LSTFVHLIKGLI-RVNKW 970 (997)
Q Consensus 953 ~-~~~~~~l~~~y~-~~g~~ 970 (997)
+ ..++..++.+|. ..|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 5 889999999984 55553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-17 Score=178.03 Aligned_cols=294 Identities=11% Similarity=-0.026 Sum_probs=239.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHH
Q 001911 585 IPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDA 664 (997)
Q Consensus 585 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 664 (997)
+.+...+..+...+...|++++|..+|+++.... +.+...+..++..+...|++++|...+++
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 81 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-----------------PFHASCLPVHIGTLVELNKANELFYLSHK 81 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCTTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CCChhhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4455566777788888899999999988887653 45566777788888889999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001911 665 MSVVGCEPNNIVYDALIDGFCKVG-KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN 743 (997)
Q Consensus 665 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 743 (997)
+.... +.+..++..+...+...| ++++|...|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+
T Consensus 82 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 158 (330)
T 3hym_B 82 LVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGC 158 (330)
T ss_dssp HHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTC
T ss_pred HHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-ccc
Confidence 88765 556778888888999999 899999999999887644 56778888999999999999999999988764 334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--------CCCCHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG--------CAPNFV 815 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~ 815 (997)
...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|+..++++.+.. ......
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 5677778899999999999999999998864 3367888999999999999999999999988631 122467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
++..+..++...|++++|...+++..+.. +.+...+..++.+|...
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLI----------------------------------PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhC----------------------------------ccchHHHHHHHHHHHHh
Confidence 89999999999999999999999987642 22355788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-HhcCCHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESL-SLARKID 936 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 936 (997)
|++++|.+.++++.+..|. +...+..++.++ ...|+.+
T Consensus 284 g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRD---DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSC---CHHHHHHHHHHHHTTTTC--
T ss_pred ccHHHHHHHHHHHHccCCC---chHHHHHHHHHHHHHhCchh
Confidence 9999999999999998775 788888898888 4556654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-18 Score=186.36 Aligned_cols=291 Identities=11% Similarity=-0.038 Sum_probs=227.4
Q ss_pred HHhcCChHHHHH-HHHHHHhcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 001911 649 LCKVHKVREAHD-LLDAMSVVGC-EP--NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR 724 (997)
Q Consensus 649 ~~~~g~~~~A~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 724 (997)
+.-.|++++|.+ .+++...... .| +...+..+...+...|++++|...|+++.+..+. +..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 344578888888 7776554321 11 3455778888899999999999999999988644 77788889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHH
Q 001911 725 LDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA---------------MIDGF 789 (997)
Q Consensus 725 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~ 789 (997)
+++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999988764 457788889999999999999999999998876432 2222211 23344
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
...|++++|+..++++.+..... +..++..+..++...|++++|...++++....
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------ 247 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR------------------------ 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------
Confidence 48899999999999999863111 48899999999999999999999999987642
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+.+...+..++.+|...|++++|++.++++.+..|. +..++..++.++...|++++|...++++++
T Consensus 248 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~- 313 (368)
T 1fch_A 248 ----------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---YIRSRYNLGISCINLGAHREAVEHFLEALN- 313 (368)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred ----------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 233567889999999999999999999999988765 788999999999999999999999999988
Q ss_pred CCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 949 DGSPE------------LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 949 ~~~p~------------~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
..|+ ..+|..++.+|...|++++|..++++.+
T Consensus 314 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 314 -MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp -HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred -hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 3342 5789999999999999999999887543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-15 Score=173.77 Aligned_cols=408 Identities=13% Similarity=0.085 Sum_probs=277.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 517 DVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALID 596 (997)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 596 (997)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++.+.. .|+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 5667777776 366777777777777777653 225566777777777777777777777777765 356666655554
Q ss_pred HH-HHcCCHHHHHH----HHHHHHhccCCCchhHHHHHhccCCC-CCCceeHHHHHHHHHh---------cCChHHHHHH
Q 001911 597 GH-CKAGDIERACR----IYARMKGNAEISDVDIYFRVLDNNCK-EPNVYTYGALIDGLCK---------VHKVREAHDL 661 (997)
Q Consensus 597 ~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~ 661 (997)
.. ...|+.+.|.+ +|+...... |. +++...|...+....+ .|++++|..+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~---------------g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKI---------------GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHT---------------TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHC---------------CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 22 33455555544 555554321 11 2344566666665543 6889999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HcC---CCCC--------HHh
Q 001911 662 LDAMSVVGCEPNNIVYDALIDGF-------------CKVGKLDEAQMVFSKML------EHG---CNPN--------VYT 711 (997)
Q Consensus 662 ~~~m~~~~~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~ 711 (997)
|++.+.....+....|....... .+.+++..|..++.... +.. +.|+ ...
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 99998732111123343322211 12345677777766532 221 2333 234
Q ss_pred HHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHH
Q 001911 712 YGSLIDRLFKD----KRL----DLALKVISKMLEDSYAPNVVIYTEMIDGLIK-------VGKTE-------EAYKVMLM 769 (997)
Q Consensus 712 ~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~ 769 (997)
|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .|+++ +|..++++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 54444332221 222 47778888888753 4567788888887775 68876 89999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001911 770 MEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-F-VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPT 847 (997)
Q Consensus 770 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 847 (997)
..+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|++..+..
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--- 386 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--- 386 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---
Confidence 886313336888889999999999999999999999985 564 3 578888888889999999999999887632
Q ss_pred chhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 001911 848 HVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDH-YIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLI 926 (997)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 926 (997)
+.....|...+.. +...|+.++|..+|+++.+..|+ +...|..++
T Consensus 387 -------------------------------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~---~~~~~~~~~ 432 (530)
T 2ooe_A 387 -------------------------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYVLAYI 432 (530)
T ss_dssp -------------------------------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred -------------------------------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC---CHHHHHHHH
Confidence 1112223333332 34689999999999999988775 788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 927 ESLSLARKIDKAFELYVDMIRKD-GSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 927 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
..+...|+.++|..+|++++... ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 433 ~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999853 2343 447888888888999999999999888663
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-16 Score=177.04 Aligned_cols=298 Identities=14% Similarity=0.000 Sum_probs=235.4
Q ss_pred HHHcCCHHHHHH-HHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 001911 598 HCKAGDIERACR-IYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIV 676 (997)
Q Consensus 598 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 676 (997)
+...|++++|.. .+++....... ....+...+..+...+.+.|++++|...|+++.... +.+..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~-------------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 100 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEE-------------NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEA 100 (368)
T ss_dssp -----------CHHHHCCCCCCSS-------------CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCC-------------CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 344578888888 77766543210 012246778899999999999999999999999876 667889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTE------- 749 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------- 749 (997)
+..+...+...|++++|...|+++.+..+. +..++..+...+...|++++|...++++.+... .+...+..
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 178 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGG 178 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC--------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhh
Confidence 999999999999999999999999998654 788999999999999999999999999998642 22222221
Q ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 001911 750 --------MIDGLIKVGKTEEAYKVMLMMEEKGCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRV 819 (997)
Q Consensus 750 --------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ 819 (997)
.+..+...|++++|...++++.+..... +..++..+...+...|++++|+..++++... .| +..++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~ 256 (368)
T 1fch_A 179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNK 256 (368)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 1333348899999999999999863321 5889999999999999999999999999986 35 6889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
+..++...|++++|...++++.+.. +.+...+..++.+|.+.|+++
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQ----------------------------------PGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCcHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999987642 234567889999999999999
Q ss_pred HHHHHHHHHhcCCCCC--------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNS--------AASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+|++.++++.+..|.. .....+|..++.++...|++++|..++++.++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999998876542 11268899999999999999999998876544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-17 Score=180.05 Aligned_cols=262 Identities=11% Similarity=-0.042 Sum_probs=168.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
+..+...+.+.|++++|+..|+++.+..+. +..++..+...+...|++++|+..|+++.+.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 334444444444444444444444444322 34444444444555555555555555444432 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 001911 757 VGKTEEAYKVMLMMEEKGCY---------PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA-PNFVTYRVLINHCCA 826 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~l~~~~~~ 826 (997)
.|++++|.+.|+++.+.... .....+..+...+...|++++|++.++++.+.... ++..++..+...|..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555555442100 01233445577788888999999999988886311 157888888999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 827 SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHE 906 (997)
Q Consensus 827 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 906 (997)
.|++++|...++++.+.. +.+...|..++.+|...|++++|++.++
T Consensus 226 ~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR----------------------------------PEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998877643 2335578889999999999999999999
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHhcCCHHHH
Q 001911 907 EMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-------------LSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~y~~~g~~~eA 973 (997)
++.+..|. +..++..++.+|...|++++|...|+++++ ..|+ ..+|..|+.++...|+.+.|
T Consensus 272 ~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 272 RALEIQPG---FIRSRYNLGISCINLGAYREAVSNFLTALS--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHCTT---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--HHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 99887765 688888999999999999999999999887 3343 46788999999999999988
Q ss_pred HHHHHH
Q 001911 974 LQLSYS 979 (997)
Q Consensus 974 ~~~~~~ 979 (997)
....++
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-14 Score=169.16 Aligned_cols=412 Identities=11% Similarity=0.030 Sum_probs=295.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001911 480 IPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTAL 559 (997)
Q Consensus 480 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 559 (997)
+-+...|..++. +.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|+++++.. |+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346667888887 467889999999999998764 3367888899999999999999999999998863 577777766
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHhC-CCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhccCCCch
Q 001911 560 IHAY-LKARKPSQANE----LFETMLSK-GCI-PNIVTFTALIDGHCK---------AGDIERACRIYARMKGNAEISDV 623 (997)
Q Consensus 560 l~~~-~~~g~~~~A~~----~~~~m~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~ 623 (997)
+... ...|+.++|.+ +|+..+.. |.. ++...|...+....+ .|+++.|..+|++..... .
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~--- 161 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-M--- 161 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-C---
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-h---
Confidence 6433 34577776655 66666543 433 356677777766554 688999999999987631 0
Q ss_pred hHHHHHhccCCCCCCceeHHHHHHH-----------H--HhcCChHHHHHHHHHHH------hcC---CCCC--------
Q 001911 624 DIYFRVLDNNCKEPNVYTYGALIDG-----------L--CKVHKVREAHDLLDAMS------VVG---CEPN-------- 673 (997)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~li~~-----------~--~~~g~~~~A~~~~~~m~------~~~---~~~~-------- 673 (997)
.+....|...... . .+.+++..|..++..+. +.. ++|+
T Consensus 162 ------------~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 162 ------------INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp ------------TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred ------------hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 0001122211110 0 13456777877776632 211 2443
Q ss_pred HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------cCCHH-------HHHHH
Q 001911 674 NIVYDALIDGFCKV----GKL----DEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK-------DKRLD-------LALKV 731 (997)
Q Consensus 674 ~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~ 731 (997)
...|...+...... ++. +++..+|++++...+. +...|...+..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 24555555433221 232 4788899999987543 67888888888775 68877 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 732 ISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP-NV-VTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
+++.++.-.+.+...|..++..+.+.|++++|..+|+++.+. .| +. ..|..++..+.+.|++++|.++|++..+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999987323456889999999999999999999999999985 44 33 58999998899999999999999999986
Q ss_pred CCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHH
Q 001911 810 CAP-NFVTYRVLINH-CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRI 887 (997)
Q Consensus 810 ~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 887 (997)
.| +...|...+.. +...|+.++|..+|++..+.. +.+...|..
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~----------------------------------p~~~~~~~~ 430 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY----------------------------------GDIPEYVLA 430 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH----------------------------------TTCHHHHHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC----------------------------------CCCHHHHHH
Confidence 34 33444433333 346899999999999887642 123567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSA-ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
++..+.+.|+.++|..+|+++....|..+ .....|...+......|+.+.+..+++++.+ ..|
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~--~~p 494 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT--AFR 494 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH--HTH
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCc
Confidence 99999999999999999999998755321 2344777777777888999999999999988 456
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-16 Score=169.91 Aligned_cols=280 Identities=12% Similarity=-0.032 Sum_probs=205.5
Q ss_pred CceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 001911 638 NVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLID 717 (997)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 717 (997)
+...+..+...+...|++++|..+|+++.... +.+..++..+...+...|++++|...++++.+..+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 44556677777788888888888888877665 456677777777788888888888888877776433 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCH
Q 001911 718 RLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMID--GFGKVGKV 795 (997)
Q Consensus 718 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~ 795 (997)
.+...|++++|.+.++++.+.. +.+...+..+... .|+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 7777777777777777776643 1122222221100 011111222313 37788899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhcc
Q 001911 796 DKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGK 875 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 875 (997)
++|++.++++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------------------- 202 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR------------------------------- 202 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------------------------
Confidence 99999999998863 3368889999999999999999999999887642
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 001911 876 TDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-- 953 (997)
Q Consensus 876 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 953 (997)
+.+...+..++.+|...|++++|++.++++.+..|. +..++..++.++...|++++|.+.++++++ ..|+
T Consensus 203 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 274 (327)
T 3cv0_A 203 ---PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG---YVRVMYNMAVSYSNMSQYDLAAKQLVRAIY--MQVGGT 274 (327)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTSC
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccc
Confidence 233557888999999999999999999999887765 788899999999999999999999999988 4455
Q ss_pred -----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 954 -----------LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 954 -----------~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..++..++.+|...|++++|...+++..+
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999876544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-17 Score=177.12 Aligned_cols=269 Identities=12% Similarity=0.000 Sum_probs=217.6
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 001911 637 PNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLI 716 (997)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 716 (997)
.+...+..+...+.+.|++++|.+.|+++.... +.+..+|..+...|...|++++|+..|+++.+..+. +..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 345568888889999999999999999998876 567888999999999999999999999999987643 678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 001911 717 DRLFKDKRLDLALKVISKMLEDSYAPN-----------VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY-PNVVTYTA 784 (997)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ 784 (997)
..|...|++++|...++++.+.. |+ ...+..+...+.+.|++++|.+.++++.+.... ++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999988742 22 223344578899999999999999999986432 26889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI 864 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 864 (997)
+...|...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...++++.+..
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------- 277 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-------------------- 277 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Confidence 9999999999999999999999862 3368899999999999999999999999987643
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc---------chhhHHHHHHHHHhcCCH
Q 001911 865 VSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAA---------SRNSTLLLIESLSLARKI 935 (997)
Q Consensus 865 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~ 935 (997)
+.+...+..++.+|...|++++|++.++++.+..|.... +..+|..++.++...|+.
T Consensus 278 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 278 --------------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp --------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred --------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 223567889999999999999999999999887654221 468899999999999999
Q ss_pred HHHHHHHHH
Q 001911 936 DKAFELYVD 944 (997)
Q Consensus 936 ~~A~~~~~~ 944 (997)
+.+..+.++
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 988877655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-15 Score=172.96 Aligned_cols=384 Identities=13% Similarity=-0.016 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--
Q 001911 519 YTYTILIDNFCKAGLIEQARNWFDEMVKE--------GCDPNVVTYTALIHAYLKARKPSQANELFETMLSK-----G-- 583 (997)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g-- 583 (997)
..|+.|...+...|++++|++.|++..+. .......+|+.+...|...|++++|...+++..+. +
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 34444444444445555554444443321 00112344455555555555555555555444321 0
Q ss_pred CCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHH---HHhcCChHHH
Q 001911 584 CIPNIVTFTALIDGHCK--AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDG---LCKVHKVREA 658 (997)
Q Consensus 584 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A 658 (997)
......++..+..++.. .+++++|...|++..... +.+...+..+... +...++.++|
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----------------p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----------------PKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 01123344444333333 234666666666665432 2233333333333 2334555666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 659 HDLLDAMSVVGCEPNNIVYDALIDGFCK----VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 659 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
++.+++..... +.+..++..+...+.. .|++++|...+++.....+. +..++..+...|...|++++|...+++
T Consensus 195 l~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 195 IDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 66666665544 3344455444444333 34556666666666665433 555666666667777777777777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 001911 735 MLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNF 814 (997)
Q Consensus 735 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 814 (997)
..+.. +.+..++..+...|...+....+.. ...........+.+++|+..+++..+.. +.+.
T Consensus 273 al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 273 ALEYI-PNNAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 66543 2344555555554432211100000 0000001111223456666666666542 1234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHH-HHH
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILID-HYI 893 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~ 893 (997)
.++..+...+...|++++|...|++......++.. ....+..++. .+.
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~-------------------------------~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSKELTPVA-------------------------------KQLLHLRYGNFQLY 383 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH-------------------------------HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH-------------------------------HHHHHHHHHHHHHH
Confidence 55666677777777777777777776654211000 0011222332 234
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEE 972 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~e 972 (997)
..|++++|++.|+++.+..|. +.. . .+..+.+.+++++.++ ..| ++.+|..|+.+|...|++++
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~---~~~-~---------~~~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQK---SRE-K---------EKMKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCC---CHH-H---------HHHHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC-
T ss_pred HCCCHHHHHHHHHHHHhcCcc---cHH-H---------HHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 567777777777777766543 111 1 1122344455555555 345 36677777777777777777
Q ss_pred HHHHHHHhhccCC
Q 001911 973 ALQLSYSICHTDI 985 (997)
Q Consensus 973 A~~~~~~~~~~~~ 985 (997)
|++.+++.++.+.
T Consensus 449 A~~~y~kALe~~~ 461 (472)
T 4g1t_A 449 ADEDSERGLESGS 461 (472)
T ss_dssp -------------
T ss_pred HHHHHHHHHhcCC
Confidence 7777777666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-15 Score=171.90 Aligned_cols=338 Identities=14% Similarity=0.003 Sum_probs=224.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHH
Q 001911 587 NIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMS 666 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 666 (997)
....|+.+...+...|++++|++.|++..+.. .........+....+|+.+...|...|++++|...+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~--------~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELI--------QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34667888888888888888888888765421 0000011123345678999999999999999999998876
Q ss_pred hcC-------CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH---HHhcCCHHHHHHHHHH
Q 001911 667 VVG-------CEPNNIVYDALIDGFCKV--GKLDEAQMVFSKMLEHGCNPNVYTYGSLIDR---LFKDKRLDLALKVISK 734 (997)
Q Consensus 667 ~~~-------~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~ 734 (997)
... ......++..+..++... +++++|+..|++..+..+. +...+..+... +...++.++|++.+++
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 421 112356677666666654 4699999999999998654 45555555544 3456778889999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 001911 735 MLEDSYAPNVVIYTEMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC 810 (997)
Q Consensus 735 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 810 (997)
.++.. +.+...+..+...+.. .|+.++|.+.+++...... .+...+..+...|...|++++|++.+++..+.
T Consensus 201 al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 276 (472)
T 4g1t_A 201 AIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-- 276 (472)
T ss_dssp HHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--
Confidence 88754 3456666666655554 4677899999999887643 37788899999999999999999999999986
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHH
Q 001911 811 AP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILI 889 (997)
Q Consensus 811 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 889 (997)
.| +..++..+..+|...+....+..... .... .........|...+.+..... +.....+..++
T Consensus 277 ~p~~~~~~~~lg~~y~~~~~~~~~~~~~~----------~~~~----~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg 341 (472)
T 4g1t_A 277 IPNNAYLHCQIGCCYRAKVFQVMNLRENG----------MYGK----RKLLELIGHAVAHLKKADEAN-DNLFRVCSILA 341 (472)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHC----------------CH----HHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHH----------HHHH----HHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHH
Confidence 46 57777777777654322211111000 0000 001112233334443333221 22344688899
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES-LSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
..|...|++++|++.|+++.+..+........+..++.. ....|++++|+..|+++++ +.|+.
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~ 405 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKS 405 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCC
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccc
Confidence 999999999999999999998765321122344455543 3567999999999999999 77863
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=161.32 Aligned_cols=275 Identities=11% Similarity=0.069 Sum_probs=214.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNN--IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR 724 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 724 (997)
.-....|++.+|++.++..... .|+. .....+..+|...|+++.|+..++. . -.|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 3455689999999988876543 3432 3456678899999999999986654 1 34577788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001911 725 LDLALKVISKMLEDSYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 725 ~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
.++|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998765434 566777778899999999999999987 4578889999999999999999999999
Q ss_pred HHHhCCCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 804 QMSSKGCAPNFV-T--YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 804 ~m~~~g~~p~~~-~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
++.+. .|+.. . ...++..+...|++++|..+|+++.+.. +.
T Consensus 155 ~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----------------------------------p~ 198 (291)
T 3mkr_A 155 KMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----------------------------------SP 198 (291)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----------------------------------CC
T ss_pred HHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----------------------------------CC
Confidence 99986 46532 1 1223345556689999999999988753 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDK-AFELYVDMIRKDGSPELSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~ 959 (997)
+...++.++.+|.+.|++++|++.++++.+..|+ +..++..++..+...|+.++ +.++++++++ ..|+...
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~--- 270 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG---HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF--- 270 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---
Confidence 5567888999999999999999999999998876 88899999999999999865 6788999998 6786321
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 001911 960 LIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 960 l~~~y~~~g~~~eA~~~~ 977 (997)
+.+.+.+.+.++++..-|
T Consensus 271 ~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 271 IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 223455566666665544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=188.94 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHh---CCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 301 DTVLYTKMISGLCEASLFEEAMDLLNRMRA---RSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHS 377 (997)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 377 (997)
-..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456889999999999999999999887763 57889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCcccc------ccc
Q 001911 378 LIHAYCRSGD-YSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLN------KIN 450 (997)
Q Consensus 378 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~ 450 (997)
||+++|+.|+ .++|.++|++|.+.|+.||.++|+.++.+.. .+.+++..+.+ .-+..|+ ..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e----------R~~vL~~Vrkv-~P~f~p~~~~~~~~~t 274 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED----------RATVLKAVHKV-KPTFSLPPQLPPPVNT 274 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH----------HHHHHHHHGGG-CCCCCCCCCCCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh----------HHHHHHHHHHh-CcccCCCCCCcccccc
Confidence 9999999887 4788899999999999999999988876543 24444444444 3344443 234
Q ss_pred hhHHHHHHHccC
Q 001911 451 VSNFVQCLCGAG 462 (997)
Q Consensus 451 ~~~l~~~~~~~g 462 (997)
...+...|.+.+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 444555555444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=161.35 Aligned_cols=254 Identities=11% Similarity=0.023 Sum_probs=207.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 682 DGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTE 761 (997)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 761 (997)
+-....|++..|+..+++.....+.+.......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34556799999999988776543222234556778999999999999987754 23567788899999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 762 EAYKVMLMMEEKGCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEM 840 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 840 (997)
+|.+.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++.++.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999876545 566677777899999999999999987 357889999999999999999999999999
Q ss_pred HhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 001911 841 KQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY---RILIDHYIKAGRLEVALELHEEMTSFSSNSAA 917 (997)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 917 (997)
.+.. |+.... ..++..+...|++++|+.+|+++.+..|.
T Consensus 157 ~~~~-----------------------------------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~--- 198 (291)
T 3mkr_A 157 QDQD-----------------------------------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--- 198 (291)
T ss_dssp HHHC-----------------------------------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC---
T ss_pred HhhC-----------------------------------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC---
Confidence 8743 332211 12334455669999999999999988775
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH-HHHHHHHhhccCC
Q 001911 918 SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEE-ALQLSYSICHTDI 985 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~e-A~~~~~~~~~~~~ 985 (997)
+...++.++.++...|++++|.+.++++++ ..|+ +.++..++.++...|++++ +.++++++.....
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999999999 6785 8899999999999999987 5688888776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-15 Score=163.96 Aligned_cols=252 Identities=10% Similarity=-0.033 Sum_probs=186.9
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
+.+...+..+...+...|++++|.+.++++.... +.+..++..+...|...|++++|...++++.+..+. +...+..+
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 129 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVN 129 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 4466788889999999999999999999999875 567889999999999999999999999999987543 22233222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMID--GLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
... .|+......+.. .+...|++++|.+.++++.+... .+...+..+...+...|
T Consensus 130 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 130 LQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSN 186 (327)
T ss_dssp --------------------------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTT
T ss_pred hHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhc
Confidence 110 011111222312 25667888888888888877633 36778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 794 KVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
++++|++.++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 187 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------- 236 (327)
T 3cv0_A 187 NYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN----------------------------- 236 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------
Confidence 8888888888888752 2357788888889999999999999988876542
Q ss_pred ccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---------CcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 874 GKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS---------AASRNSTLLLIESLSLARKIDKAFELYVD 944 (997)
Q Consensus 874 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 944 (997)
+.+...+..++.+|...|++++|.+.++++....|.. ..+...+..++.++...|++++|...+++
T Consensus 237 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 237 -----PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred -----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2234567788899999999999999999988766541 11577888899999999999999988876
Q ss_pred HHH
Q 001911 945 MIR 947 (997)
Q Consensus 945 ~~~ 947 (997)
+++
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-15 Score=162.40 Aligned_cols=281 Identities=14% Similarity=0.148 Sum_probs=111.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARN 539 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 539 (997)
+.|++++|.+.++++ ++..+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 667788888888777 23347888888888888888888888542 466677888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 001911 540 WFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAE 619 (997)
Q Consensus 540 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 619 (997)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+.
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---- 149 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 149 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 77666653 3456677778888888888888777663 3566688888888888888888888887651
Q ss_pred CCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 620 ISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSK 699 (997)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 699 (997)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 150 ---------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 150 ---------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp ---------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred ---------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5778888888888888888888877 2677788888888888888888554443
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC
Q 001911 700 MLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV--GKTEEAYKVMLMMEEKGCYP 777 (997)
Q Consensus 700 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p 777 (997)
+ ...+.-...++..|.+.|++++|..+++..+... +.....|+.|.-.|++- +++.+.+++|..-. +++|
T Consensus 203 L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k 274 (449)
T 1b89_A 203 I-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPK 274 (449)
T ss_dssp T-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHH
T ss_pred H-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcH
Confidence 2 1233334467777777888888888887777554 44566677776666653 34445555544221 1222
Q ss_pred ------CHHHHHHHHHHHhccCCHHHHHH
Q 001911 778 ------NVVTYTAMIDGFGKVGKVDKCLE 800 (997)
Q Consensus 778 ------~~~~~~~li~~~~~~g~~~~A~~ 800 (997)
+...|.-+.-.|.+.++++.|..
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 23345666666666666666655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-15 Score=158.61 Aligned_cols=238 Identities=14% Similarity=0.189 Sum_probs=54.9
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH
Q 001911 282 KAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLS 361 (997)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (997)
+.|++++|.+++++. ++..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445666666666664 2234666777777777777777776654 2455566666766667777777777666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHH
Q 001911 362 MMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLN 441 (997)
Q Consensus 362 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~ 441 (997)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...+...|. ++.|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~------yeeA~~~Y~~a-- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM------YDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------C------TTTHHHHHHHT--
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC------HHHHHHHHHHh--
Confidence 55553 3445666667777777777777666663 1444444444433322211 22222222211
Q ss_pred cCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 001911 442 AGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTY 521 (997)
Q Consensus 442 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 521 (997)
..+..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 12333444444555555555555544 13445555555555555555553322221 1122223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001911 522 TILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYL 564 (997)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 564 (997)
..++..|.+.|.+++|..+++...... +.....|+-|...|+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 334445555555555555555544332 223344444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-14 Score=148.68 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.+..++..|...|++++|++.++++.+..|. +..++..++.++...|++++|+..++++++ ..|+ ..++..++.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHH
Confidence 4445555555555555555555555554443 445555555555555566666665555555 3343 555555556
Q ss_pred HHHhcCCHHHHHHHHHHhhcc
Q 001911 963 GLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~~~~ 983 (997)
+|...|++++|...++++...
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666665555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-16 Score=179.36 Aligned_cols=152 Identities=9% Similarity=0.095 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 672 PNNIVYDALIDGFCKVGKLDEAQMVFSKMLE---HGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYT 748 (997)
Q Consensus 672 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 748 (997)
.-..+||+||++||+.|++++|.++|.+|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457889999999999999999999877664 4788888999999999999999999999999988888888999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC------HHHHHHHH
Q 001911 749 EMIDGLIKVGK-TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN------FVTYRVLI 821 (997)
Q Consensus 749 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~~~~~l~ 821 (997)
+||+++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ .-++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99988888887 477888888898888888888888888665543 344444444 3344443 34445555
Q ss_pred HHHHhcC
Q 001911 822 NHCCASG 828 (997)
Q Consensus 822 ~~~~~~g 828 (997)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6665554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=144.69 Aligned_cols=197 Identities=18% Similarity=0.153 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 001911 741 APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRV 819 (997)
Q Consensus 741 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ 819 (997)
+++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|+..+++.++. .| +...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 456667778888888888888888888888876433 6778888888888888888888888888875 45 5778888
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHH
Q 001911 820 LINHCCAS-----------GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRI 887 (997)
Q Consensus 820 l~~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ 887 (997)
+..++... |++++|+..+++..+.. |+ ...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----------------------------------P~~~~~~~~ 123 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-----------------------------------PRYAPLHLQ 123 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-----------------------------------cccHHHHHH
Confidence 88888888 99999999999887643 44 557889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIR 966 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~ 966 (997)
++.+|...|++++|++.|+++.+.. . +...+..++.++...|++++|+..|+++++ ..|+ ..++..++.+|..
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE-D---TPEIRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc-c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999876 3 888999999999999999999999999999 6785 8899999999999
Q ss_pred cCCHHHHHHHHHHhh
Q 001911 967 VNKWEEALQLSYSIC 981 (997)
Q Consensus 967 ~g~~~eA~~~~~~~~ 981 (997)
.|++++|+..++++.
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-14 Score=145.75 Aligned_cols=237 Identities=12% Similarity=0.035 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSY--APN----VVIY 747 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 747 (997)
...+..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|...++++.+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456777778888888888888888888776 5777788888888888888888888888775421 111 5778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 001911 748 TEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCA 826 (997)
Q Consensus 748 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~ 826 (997)
..+...|.+.|++++|.+.|+++.+. .|+. ..+...|++++|++.++++... .| +...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 88888889999999999999988875 3443 3456678889999999998885 45 56788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 827 SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHE 906 (997)
Q Consensus 827 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 906 (997)
.|++++|...++++.... +.+...+..++.+|...|++++|++.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA----------------------------------PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC----------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999887643 2335678889999999999999999999
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CC-HHHHHHHHH
Q 001911 907 EMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS------PE-LSTFVHLIK 962 (997)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------p~-~~~~~~l~~ 962 (997)
++.+..|. +...+..++.++...|++++|...++++++ .. |+ ..++..+..
T Consensus 198 ~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 198 KAIEKDPN---FVRAYIRKATAQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hChhhcCCCchHHHHHHHHH
Confidence 99987765 788899999999999999999999999988 44 65 445555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-14 Score=160.60 Aligned_cols=375 Identities=13% Similarity=0.040 Sum_probs=229.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 524 LIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKP---SQANELFETMLSKGCIPNIVTFTALIDGHCK 600 (997)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 600 (997)
+...+.+.|++++|+++|++..+.| +...+..|...|...|+. ++|...|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555667777777777777777664 333444455555566666 7777777777643 44445555554444
Q ss_pred cC-----CHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCC
Q 001911 601 AG-----DIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVR---EAHDLLDAMSVVGCEP 672 (997)
Q Consensus 601 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~ 672 (997)
.+ ++++|...|++....+ +...+..|...|...+..+ ++.+.+......|
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g-------------------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--- 139 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG-------------------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--- 139 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT-------------------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---
Confidence 43 6777888887776543 2235666666666554433 3455555555444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK---RLDLALKVISKMLEDSYAPNVVIYTE 749 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 749 (997)
+...+..|...|...+.++++........+.-...+...+..+...|...| +.++|++.|++..+.| .++...+..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~ 218 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDS 218 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 234555667777777755444444333322211223337777888888888 8888999998888876 455555566
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 750 MIDGLIKV----GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG-F--GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 750 li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
|...|... +++++|.+.|++.. .| ++..+..|... + ...|++++|+++|++..+.| +...+..|..
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK 291 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 77777554 68899999998887 33 55566666666 4 46789999999999988875 6677777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh---
Q 001911 823 HCCASG-----LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK--- 894 (997)
Q Consensus 823 ~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 894 (997)
.|. .| ++++|..+|++.. . .+..++..|+.+|..
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-~------------------------------------g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-G------------------------------------REVAADYYLGQIYRRGYL 333 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-T------------------------------------TCHHHHHHHHHHHHTTTT
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-C------------------------------------CCHHHHHHHHHHHHCCCC
Confidence 777 55 8888888887754 1 234566778887776
Q ss_pred -cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--Hhc
Q 001911 895 -AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL--IRV 967 (997)
Q Consensus 895 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y--~~~ 967 (997)
..+.++|.+.|+++.+.. +......|+..|.. ..++++|...|+++.+.| +..+...+..+. ...
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g---~~~a~~~l~~l~~~~~~ 405 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNG-----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD---TPEANDLATQLEAPLTP 405 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTT-----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC---CHHHHHHHHHHHTTCCH
T ss_pred CCcCHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCH
Confidence 348999999999988753 56677788888875 358999999999998865 222333333332 233
Q ss_pred CCHHHHHHHHHHhh
Q 001911 968 NKWEEALQLSYSIC 981 (997)
Q Consensus 968 g~~~eA~~~~~~~~ 981 (997)
++..+|..+.++-.
T Consensus 406 ~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 406 AQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666766666543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-13 Score=148.71 Aligned_cols=248 Identities=14% Similarity=0.077 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR-LDLALKVISKMLEDSYAPNVVIYTEMID 752 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 752 (997)
..+|..+...+...|++++|+..++++++..+. +..+|+.+...+...|+ +++|+..|+++++.. +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456777888888999999999999999988654 67788889999999997 999999999998864 457789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh-cCCH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCA-SGLL 830 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~-~g~~ 830 (997)
++.+.|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++. .| +...|+.+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999987544 7889999999999999999999999999986 46 68899999999998 6665
Q ss_pred HHHH-----HHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcC--CHHHHH
Q 001911 831 DEAH-----NLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAG--RLEVAL 902 (997)
Q Consensus 831 ~~A~-----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~ 902 (997)
++|. ..+++.... .|+ ...|+.++.++...| ++++|+
T Consensus 252 ~eA~~~~el~~~~~Al~l-----------------------------------~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL-----------------------------------VPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH-----------------------------------STTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-----------------------------------CCCCHHHHHHHHHHHHccCccchHHHH
Confidence 8874 666666543 244 558888999999988 699999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcC--------C-HHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHHHhc
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLAR--------K-IDKAFELYVDM-IRKDGSPE-LSTFVHLIKGLIRV 967 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~~~p~-~~~~~~l~~~y~~~ 967 (997)
+.++++ +..|. +..++..++.+|...| + +++|+++|+++ ++ +.|. ...|..++..+...
T Consensus 297 ~~~~~~-~~~p~---~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 297 NQLLDL-QPSHS---SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHH-TTTCC---CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccCCC---CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHH
Confidence 999998 65554 7889999999998874 3 69999999999 77 7786 77888888877654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-12 Score=135.51 Aligned_cols=221 Identities=10% Similarity=-0.026 Sum_probs=107.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 711 TYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMI 786 (997)
Q Consensus 711 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 786 (997)
++..+...+...|++++|...|++..+. .+...+..+...|.. .|++++|.+.|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3444444444444444444444444442 123344444444444 455555555555554443 344444444
Q ss_pred HHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHh
Q 001911 787 DGFGK----VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCA----SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEG 858 (997)
Q Consensus 787 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 858 (997)
..|.. .+++++|++.|++..+.+ +...+..+...|.. .|++++|..++++..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------- 144 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-------------- 144 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------------
Confidence 44444 555555555555555432 34445555555555 555555555555443311
Q ss_pred HhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh---
Q 001911 859 FSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK----AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL--- 931 (997)
Q Consensus 859 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 931 (997)
+...+..++.+|.. .+++++|++.++++.+.. +...+..++..|..
T Consensus 145 ----------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 145 ----------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp ----------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCS
T ss_pred ----------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence 12234445555554 555555555555555432 33445555555555
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccC
Q 001911 932 -ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR----VNKWEEALQLSYSICHTD 984 (997)
Q Consensus 932 -~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~----~g~~~eA~~~~~~~~~~~ 984 (997)
.+++++|+..++++.+.+ | ..++..|+.+|.. .+++++|++++++..+.+
T Consensus 198 ~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555555555555521 2 4445555555555 555555555555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=149.96 Aligned_cols=232 Identities=15% Similarity=0.084 Sum_probs=201.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 709 VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGK-TEEAYKVMLMMEEKGCYPNVVTYTAMID 787 (997)
Q Consensus 709 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~ 787 (997)
...|..+...+.+.|++++|+..++++++.. +.+...|+.+...+...|+ +++|+..|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3567778888899999999999999999864 4567899999999999997 99999999999997544 7889999999
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHH
Q 001911 788 GFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVS 866 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a 866 (997)
++...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.+..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---------------------- 230 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---------------------- 230 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------------------
T ss_pred HHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----------------------
Confidence 999999999999999999986 56 78999999999999999999999999998753
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHh-cCCHHHH-----HHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC--CHHHH
Q 001911 867 LGLVNEMGKTDSVPIVPAYRILIDHYIK-AGRLEVA-----LELHEEMTSFSSNSAASRNSTLLLIESLSLAR--KIDKA 938 (997)
Q Consensus 867 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A 938 (997)
+.+..+|+.++.+|.. .|..++| ++.+++++...|. +..+|..++.++...| ++++|
T Consensus 231 ------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~---~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 231 ------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH---NESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTTTCGGGCHHH
T ss_pred ------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHccCccchHHH
Confidence 2345689999999999 6665777 5899999998876 8899999999999988 69999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC---------CHHHHHHHHHHh-hccC
Q 001911 939 FELYVDMIRKDGSPE-LSTFVHLIKGLIRVN---------KWEEALQLSYSI-CHTD 984 (997)
Q Consensus 939 ~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g---------~~~eA~~~~~~~-~~~~ 984 (997)
++.++++ + ..|+ ..++..|+++|.+.| .+++|+++++++ ...+
T Consensus 296 ~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 296 LNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 9999998 4 5675 789999999999985 359999999998 5544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=140.96 Aligned_cols=252 Identities=14% Similarity=0.075 Sum_probs=171.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN--VVIYTEMIDGL 754 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~ 754 (997)
+......+...|++++|+..|+++.+..+. +...+..+...+...|++++|+..++++.+....++ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 445566677778888888888887776543 445677777778888888888888888776321111 23477778888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 833 (997)
...|++++|.+.|+++.+.... +...+..+...|...|++++|++.+++..+. .| +...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888775332 5567778888888888888888888888775 44 566777777344445588888
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhc
Q 001911 834 HNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGR---LEVALELHEEMTS 910 (997)
Q Consensus 834 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 910 (997)
...++++.+.. +.+...+..++.++...|+ +++|+..++++.+
T Consensus 162 ~~~~~~a~~~~----------------------------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 162 DSSFVKVLELK----------------------------------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHhC----------------------------------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 88888876542 1224566677777777777 7778888888765
Q ss_pred CCCCCCc-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 001911 911 FSSNSAA-----SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN 968 (997)
Q Consensus 911 ~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g 968 (997)
....... ...++..++..|...|++++|.+.++++++ +.|+ ..++..+.......+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHhhhhhcccc
Confidence 4311001 125677788888888888888888888888 5675 666666666554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=145.69 Aligned_cols=248 Identities=10% Similarity=-0.049 Sum_probs=154.0
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 687 VGKLDEAQMVFSKMLEHGCN---PNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEA 763 (997)
Q Consensus 687 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 763 (997)
.|++++|+..++++.+.... .+..++..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34556666666666554221 123455556666666666666666666666543 33456666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 764 YKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 764 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
.+.|+++.+... .+...+..+...|...|++++|++.++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777777766422 24566777777777777777777777777764 354333444444556667888888877766543
Q ss_pred CCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-cchhhH
Q 001911 844 YWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-ASRNST 922 (997)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 922 (997)
. |+......++..+...++.++|++.++++....|... .+...+
T Consensus 174 ~-----------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (275)
T 1xnf_A 174 S-----------------------------------DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 218 (275)
T ss_dssp S-----------------------------------CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred C-----------------------------------CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHH
Confidence 2 2222223366667777777888888888776543211 125677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 923 LLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~ 977 (997)
..++.++...|++++|...++++++ ..|+. +...+.++...|++++|++-+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVA--NNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 7788888888888888888888887 55642 223366777778888877665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-13 Score=141.19 Aligned_cols=239 Identities=13% Similarity=-0.015 Sum_probs=196.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP--NVVTYTAMID 787 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~ 787 (997)
..+......+...|++++|+..++++++.. +.+...+..+...|...|++++|.+.++++.+.+..| ....|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345667788999999999999999999864 3456688899999999999999999999999843222 2345888999
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHH
Q 001911 788 GFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVS 866 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a 866 (997)
.+...|++++|++.|++..+. .| +..++..+..+|...|++++|...+++..+..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------------- 138 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---------------------- 138 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS----------------------
T ss_pred HHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC----------------------
Confidence 999999999999999999986 34 57899999999999999999999998876542
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC---HHHHHHHHH
Q 001911 867 LGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK---IDKAFELYV 943 (997)
Q Consensus 867 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 943 (997)
+.+...+..++..+...+++++|++.++++.+..|. +...+..++.++...|+ +++|...++
T Consensus 139 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 139 ------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN---IYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp ------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred ------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 223456777884444556999999999999998775 67888889999998888 889999999
Q ss_pred HHHHcC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 001911 944 DMIRKD-GSPE------LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 944 ~~~~~~-~~p~------~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
++++.. ..|+ ..++..++.+|...|++++|++.+++++.....-.
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 998731 1243 26888999999999999999999999988765543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-13 Score=152.07 Aligned_cols=344 Identities=16% Similarity=0.077 Sum_probs=237.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhccCCCchhHHHHHhccCCC
Q 001911 559 LIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDI---ERACRIYARMKGNAEISDVDIYFRVLDNNCK 635 (997)
Q Consensus 559 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (997)
+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|...|++..+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~------------------- 66 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD------------------- 66 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-------------------
Confidence 5667778899999999999998876 333455566666777777 899999988863
Q ss_pred CCCceeHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCC
Q 001911 636 EPNVYTYGALIDGLCKVH-----KVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKL---DEAQMVFSKMLEHGCNP 707 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p 707 (997)
. +...+..+...+...+ ++++|.+.|++....| .++ .+..|...|...+.. .++.+.+....+.|
T Consensus 67 ~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--- 139 (452)
T 3e4b_A 67 T-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--- 139 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---
T ss_pred C-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---
Confidence 2 5556777777555554 7889999999999877 333 566677777765543 34556666666655
Q ss_pred CHHhHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHH
Q 001911 708 NVYTYGSLIDRLFKDKRL----DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG---KTEEAYKVMLMMEEKGCYPNVV 780 (997)
Q Consensus 708 ~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~ 780 (997)
+......+...|...+.+ +.+..+++.... .++..+..|...|.+.| +.++|++.|++..+.|.. +..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~ 214 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQ 214 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHH
Confidence 345666777777777744 444444444433 23337888888999999 899999999999988644 666
Q ss_pred HHHHHHHHHhcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 781 TYTAMIDGFGKV----GKVDKCLELLRQMSSKGCAPNFVTYRVLINH-C--CASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 781 ~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
.+..|...|... +++++|+++|++.. .| +...+..+... + ...|++++|..++++..+.
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---------- 280 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---------- 280 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------
Confidence 556677777655 79999999999987 33 45566667766 4 4688999999999987653
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG-----RLEVALELHEEMTSFSSNSAASRNSTLLLIES 928 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 928 (997)
.+..++..|+.+|. .| ++++|++.|+++. ++ +...+..|+..
T Consensus 281 --------------------------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g---~~~A~~~Lg~~ 327 (452)
T 3e4b_A 281 --------------------------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR---EVAADYYLGQI 327 (452)
T ss_dssp --------------------------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT---CHHHHHHHHHH
T ss_pred --------------------------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC---CHHHHHHHHHH
Confidence 24556778898887 56 9999999999998 33 78889999988
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCc
Q 001911 929 LSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR----VNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 929 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~----~g~~~eA~~~~~~~~~~~~~ 986 (997)
|.. ..++++|...|+++.+.| ++.+...|+.+|.. ..+.++|..++++....|.+
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 877 348999999999999865 35568899999885 45899999999998877643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-13 Score=135.43 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=137.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 707 PNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMI 786 (997)
Q Consensus 707 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 786 (997)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 345556666666777777777777777766653 345566667777777777777777777777665322 556666677
Q ss_pred HHHhcc-----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 001911 787 DGFGKV-----------GKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRK 854 (997)
Q Consensus 787 ~~~~~~-----------g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 854 (997)
..+... |++++|+..+++.++. .| +...+..+..++...|++++|+..+++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------- 148 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---------- 148 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----------
Confidence 777777 8899999999988875 46 57788888889999999999999998876531
Q ss_pred HHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 855 VIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 855 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
.+...+..++.+|...|++++|++.|+++.+..|+ +...+..++.++...|+
T Consensus 149 -------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 149 -------------------------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK---DLDLRVRYASALLLKGK 200 (217)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTC---
T ss_pred -------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccC
Confidence 34456778889999999999999999999888775 77888888999999999
Q ss_pred HHHHHHHHHHHH
Q 001911 935 IDKAFELYVDMI 946 (997)
Q Consensus 935 ~~~A~~~~~~~~ 946 (997)
+++|++.+++.-
T Consensus 201 ~~~A~~~~~~~~ 212 (217)
T 2pl2_A 201 AEEAARAAALEH 212 (217)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 999988887753
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-12 Score=131.08 Aligned_cols=224 Identities=12% Similarity=-0.015 Sum_probs=184.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK----DKRLDLALKVISKMLEDSYAPNVVIYT 748 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 748 (997)
+..++..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55667777888888888888888888888843 55677778888888 888899999888888765 677788
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001911 749 EMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK----VGKVDKCLELLRQMSSKGCAPNFVTYRVL 820 (997)
Q Consensus 749 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 820 (997)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .|++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 899999999999888864 67788888888888 899999999999988865 56677788
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh--
Q 001911 821 INHCCA----SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK-- 894 (997)
Q Consensus 821 ~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 894 (997)
...|.. .+++++|..++++..+. .+...+..++.+|..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~------------------------------------~~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL------------------------------------KDSPGCFNAGNMYHHGE 196 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------------TCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHcCC
Confidence 888887 89999999999887653 234567778899998
Q ss_pred --cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 001911 895 --AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 895 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 949 (997)
.+++++|++.++++.+.. +...+..++..|.. .+++++|.+.|+++.+.+
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELE-----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999999998864 46778888999988 899999999999999854
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-13 Score=138.69 Aligned_cols=216 Identities=13% Similarity=0.037 Sum_probs=131.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 709 VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 709 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 3445555666666677777777777766543 34556666677777777777777777777766532 256667777777
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
+...|++++|++.++++.+.. +.+...+..+...+...|++++|..+++++.+..
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------ 155 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN------------------------ 155 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------
Confidence 777777777777777777652 2356667777777777777777777777765532
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+.+...+..++..|...|++++|++.++++.+..|. +..++..++.++...|++++|...++++++
T Consensus 156 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~- 221 (243)
T 2q7f_A 156 ----------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG---HADAFYNAGVTYAYKENREKALEMLDKAID- 221 (243)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH-
T ss_pred ----------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHc-
Confidence 123445667777777777888888777777766554 566777777777777888888888887777
Q ss_pred CCCCC-HHHHHHHHHHHHh
Q 001911 949 DGSPE-LSTFVHLIKGLIR 966 (997)
Q Consensus 949 ~~~p~-~~~~~~l~~~y~~ 966 (997)
..|+ ..++..++.+...
T Consensus 222 -~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 222 -IQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp -HCTTCHHHHHHHTC----
T ss_pred -cCcchHHHHHHHHHHHhh
Confidence 4564 5555555554433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-12 Score=133.93 Aligned_cols=130 Identities=11% Similarity=-0.053 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF 789 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 789 (997)
..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+... .+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 334444444455555555555555544432 22344444444445555555555555554444321 1344444444444
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
...|++++|+++++++...+..| +...+..+..++...|++++|..+++++.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555544444421223 23344444444444444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-12 Score=132.09 Aligned_cols=200 Identities=16% Similarity=0.052 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH 823 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~ 823 (997)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3445555566666666666666666665542 2245556666666666666666666666666542 1245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 902 (997)
+...|++++|..+++++.... ..|. ...+..++.+|...|++++|+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDT---------------------------------LYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCT---------------------------------TCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCc---------------------------------cCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666665410 0122 234555666666666666666
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
+.++++.+..|. +...+..++..+...|++++|...++++++ ..|+ ..++..++.+|...|++++|.++++++.
T Consensus 162 ~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 162 EYFEKSLRLNRN---QPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666655443 455566666666666666666666666665 3343 5556666666666666666666666665
Q ss_pred cc
Q 001911 982 HT 983 (997)
Q Consensus 982 ~~ 983 (997)
..
T Consensus 237 ~~ 238 (252)
T 2ho1_A 237 RL 238 (252)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-13 Score=136.49 Aligned_cols=205 Identities=12% Similarity=0.136 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLI 821 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~ 821 (997)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345677888888999999999999999998863 3378889999999999999999999999999863 33688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001911 822 NHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 901 (997)
..+...|++++|..+++++.+.. +.+...+..++..|...|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG----------------------------------MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT----------------------------------CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999987643 23455788899999999999999
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 902 LELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
++.++++.+..|. +...+..++.++...|++++|+..++++++ ..|+ ..++..++.+|...|++++|...++++
T Consensus 145 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 145 LPYLQRAVELNEN---DTEARFQFGMCLANEGMLDEALSQFAAVTE--QDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999988765 788999999999999999999999999999 4564 889999999999999999999999998
Q ss_pred hccCCcc
Q 001911 981 CHTDINW 987 (997)
Q Consensus 981 ~~~~~~~ 987 (997)
.......
T Consensus 220 ~~~~p~~ 226 (243)
T 2q7f_A 220 IDIQPDH 226 (243)
T ss_dssp HHHCTTC
T ss_pred HccCcch
Confidence 8765543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=152.17 Aligned_cols=285 Identities=15% Similarity=0.077 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 001911 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNV----YTYGSLIDRLFKDKRLDLALKVISKMLED----SY-APNVVI 746 (997)
Q Consensus 676 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~ 746 (997)
.+..+...+...|++++|+..|+++.+.+.. +. .++..+...|...|++++|...+++.++. +. +.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666777777777777777766433 22 35666666777777777777777766542 11 123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCC-----------------HHHHHHHHHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEK----GC-YPNVVTYTAMIDGFGKVGK-----------------VDKCLELLRQ 804 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~ 804 (997)
+..+...|...|++++|...++++.+. +- .....++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 677777788888888888887776643 11 1124467777778888888 8888888877
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 805 MSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 805 m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
..+. +..| ...++..+...|...|++++|..++++..+.. .... ...
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~~--~~~ 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--------------------------REFG--DRA 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHHT--CHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--------------------------HhcC--CcH
Confidence 6542 1112 24578888999999999999999998876521 0000 000
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRKD----GSP 952 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p 952 (997)
.....+..++.+|...|++++|++.++++....+.. .....++..++.++...|++++|...++++++.. ..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 012367789999999999999999999988654311 1125678889999999999999999999998731 111
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccch
Q 001911 953 E-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 953 ~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
. ..++..++.+|...|++++|..++++.......+..
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 1 458889999999999999999999998876655443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.5e-12 Score=126.28 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 001911 711 TYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790 (997)
Q Consensus 711 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 790 (997)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444455555555555555444432 2234445555555555555555555555555432 124445555555555
Q ss_pred cc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 791 KV-GKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 791 ~~-g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
.. |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------ 143 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ------------------------ 143 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------------
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------
Confidence 55 555555555555555222232 4445555555555555555555555544321
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSS-NSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+.+...+..++.+|...|++++|.+.++++.+..| . +...+..++..+...|+.++|..+++.+.+
T Consensus 144 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 144 ----------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL---QADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11233445555555555555555555555555443 2 444444444555555555555555555554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-12 Score=128.42 Aligned_cols=204 Identities=11% Similarity=-0.040 Sum_probs=176.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLI 821 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~ 821 (997)
.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 456788889999999999999999999999864 3368889999999999999999999999999863 33688899999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHH
Q 001911 822 NHCCAS-GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 822 ~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 899 (997)
..+... |++++|...++++.+.. ..|. ...+..++.+|...|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADP---------------------------------TYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTST---------------------------------TCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCc---------------------------------CCcchHHHHHHHHHHHHHcCCHH
Confidence 999999 99999999999987611 1233 457788999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-E-LSTFVHLIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~y~~~g~~~eA~~~~ 977 (997)
+|++.++++.+..|. +...+..++.++...|++++|...++++++ ..| + ...+..++..+...|+.++|..++
T Consensus 131 ~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 131 LAEAYLKRSLAAQPQ---FPPAFKELARTKMLAGQLGDADYYFKKYQS--RVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999988765 788899999999999999999999999998 456 4 778889999999999999999999
Q ss_pred HHhhccCC
Q 001911 978 YSICHTDI 985 (997)
Q Consensus 978 ~~~~~~~~ 985 (997)
+.+.....
T Consensus 206 ~~~~~~~p 213 (225)
T 2vq2_A 206 AQLQANFP 213 (225)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 99876543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=137.85 Aligned_cols=250 Identities=12% Similarity=-0.022 Sum_probs=195.5
Q ss_pred HhcCChHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 650 CKVHKVREAHDLLDAMSVVGC---EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
...|++++|.+.++++..... +.+..++..+...+...|++++|...|+++.+..+. +..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 345789999999999998632 124677889999999999999999999999998654 7889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 727 LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
+|...++++++.. +.+...+..+...|.+.|++++|.+.|+++.+.. |+......++..+...|++++|+..+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999864 4467889999999999999999999999999853 444444445555677899999999998888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhH
Q 001911 807 SKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAY 885 (997)
Q Consensus 807 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~ 885 (997)
... .++...+ .++..+...++.++|...+++...... . ..|+ ...+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~----~---------------------------~~~~~~~~~ 218 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNT----S---------------------------LAEHLSETN 218 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHH----H---------------------------HHHHHHHHH
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccc----c---------------------------ccccccHHH
Confidence 752 3344444 477778888899999999988754310 0 0011 3567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELY 942 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 942 (997)
..++.+|...|++++|.+.++++....|. + +...+.++...|++++|++.+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~---~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANNVH---N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCT---T---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCch---h---HHHHHHHHHHHHHHHhhHHHH
Confidence 88999999999999999999999988754 2 333456777889999998877
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-13 Score=149.71 Aligned_cols=305 Identities=13% Similarity=0.082 Sum_probs=230.8
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN----NIVYDALIDGFCKVGKLDEAQMVFSKMLEH----GCNP 707 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 707 (997)
......+......+...|++++|...|++..... +.+ ..++..+...|...|++++|...++++.+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4445566777888999999999999999998875 334 357888999999999999999999987653 2111
Q ss_pred -CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHHHcCC--------------------HH
Q 001911 708 -NVYTYGSLIDRLFKDKRLDLALKVISKMLEDS----YA-PNVVIYTEMIDGLIKVGK--------------------TE 761 (997)
Q Consensus 708 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~--------------------~~ 761 (997)
...++..+...+...|++++|...+++..+.. .. ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 24567788889999999999999999887531 01 114478888899999999 99
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 001911 762 EAYKVMLMMEEK----GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN----FVTYRVLINHCCASGLLD 831 (997)
Q Consensus 762 ~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~ 831 (997)
+|.+.+.+..+. +..| ...++..+...+...|++++|++.+++..+... .++ ..++..+..++...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887642 1111 234678888899999999999999999875310 122 347888999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 832 EAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 832 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
+|..++++..... ... +..+. ..++..++..|...|++++|++.++++.+
T Consensus 245 ~A~~~~~~al~~~--------------------------~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLA--------------------------RQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHH--------------------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------------------HhC---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999876421 000 00111 34677899999999999999999999886
Q ss_pred CCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCH
Q 001911 911 FSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRK----DGSPE-LSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 911 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~y~~~g~~ 970 (997)
..+.. .....++..++.++...|++++|...++++++. +..+. ..++..++.+|...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 53211 112567888999999999999999999998763 11222 56888999999999976
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-12 Score=124.46 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
+...|..+...|...|++++|++.|++.++. .| +..++..+..+|...|++++|...+++.....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------------ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------------ 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 3445555555666666666666666665554 34 45555556666666666666666655554321
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHH
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKID 936 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 936 (997)
+.+...+..++..+...+++++|.+.++++....|. +...+..++.++...|+++
T Consensus 70 ----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 70 ----------------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV---YADAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHhCCch
Confidence 112334455555566666666666666666555443 5555556666666666666
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 937 KAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 937 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
+|++.|+++++ ..|+ ..++..++.+|.+.|++++|++.+++.++.
T Consensus 125 ~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 125 KAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 66666666665 4453 555666666666666666666666655543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=148.90 Aligned_cols=217 Identities=12% Similarity=0.005 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT-EEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELL 802 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 802 (997)
.+++++..++...... +.+...+..+...|...|++ ++|.+.|+++.+.... +...|..+...|...|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777777766543 45778888999999999999 9999999999886433 6889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 803 RQMSSKGCAPNFVTYRVLINHCCAS---------GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 803 ~~m~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
++.++. .|+...+..+..+|... |++++|...+++..+..
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------------- 209 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----------------------------- 209 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-----------------------------
Confidence 999986 58888899999999999 99999999999987643
Q ss_pred ccCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 874 GKTDSVPIVPAYRILIDHYIKA--------GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 874 ~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
+.+...|..++.+|... |++++|++.|+++.+..|....+...|..++.+|...|++++|++.|+++
T Consensus 210 -----p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 210 -----VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23356788999999998 99999999999999987611138899999999999999999999999999
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 946 IRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 946 ~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
++ ..|+ ..++..++.++...|++++|++.+.++
T Consensus 285 l~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 285 AA--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99 6786 789999999999999999999866544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=145.68 Aligned_cols=284 Identities=15% Similarity=0.101 Sum_probs=218.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 001911 671 EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPN---VYTYGSLIDRLFKDKRLDLALKVISKMLED----SYAP- 742 (997)
Q Consensus 671 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~- 742 (997)
......+......+...|++++|...|+++.+.++... ..++..+...+...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45566777888899999999999999999999854311 357888899999999999999999987542 2122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------HHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC-YPN----VVTYTAMIDGFGKVGK--------------------VDK 797 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~ 797 (997)
...++..+...|...|++++|...++++.+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245788888999999999999999998875311 012 4478888889999999 999
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 798 CLELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 798 A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
|++.+++.... +..| ...++..+...+...|++++|...+++..+.. ..
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------~~ 219 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--------------------------KE 219 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--------------------------HH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--------------------------Hh
Confidence 99999887652 2122 25578889999999999999999999876421 00
Q ss_pred hccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 873 MGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 873 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
.+..+ ....+..++..|...|++++|++.++++....+.. .....++..++..+...|++++|...++++++.
T Consensus 220 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 220 ---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 00001 12367889999999999999999999988653221 112567888999999999999999999999873
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 949 DG-SPE----LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 949 ~~-~p~----~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.. .++ ..++..++.+|...|++++|...+++....
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 122 568889999999999999999999987664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-12 Score=139.81 Aligned_cols=279 Identities=15% Similarity=0.108 Sum_probs=193.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHH
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPN----VYTYGSLIDRLFKDKRLDLALKVISKMLED----SYA-PNVVIY 747 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~ 747 (997)
+......+...|++++|...|+++.+..+. + ...+..+...+...|++++|...+++..+. +.. .....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666677777777777777665432 2 245566666777777777777777665432 111 124566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------HHHHHHHH
Q 001911 748 TEMIDGLIKVGKTEEAYKVMLMMEEKGC-YPN----VVTYTAMIDGFGKVGK--------------------VDKCLELL 802 (997)
Q Consensus 748 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~l~ 802 (997)
..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|++.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777788888888888888887664310 112 3367777888888888 88888888
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCC
Q 001911 803 RQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTD 877 (997)
Q Consensus 803 ~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 877 (997)
++.... +..| ...++..+...+...|++++|...+++..+.. ... +
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~---~ 217 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--------------------------KEF---G 217 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------------------HHH---T
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------------------------Hhc---C
Confidence 876542 1112 24578888899999999999999998876421 000 0
Q ss_pred CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----
Q 001911 878 SVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRKD---- 949 (997)
Q Consensus 878 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 949 (997)
..+ ....+..++..|...|++++|.+.++++....+.. .....++..++..+...|++++|...++++++..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 001 12367789999999999999999999987653221 1125677889999999999999999999997731
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 950 GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 950 ~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
..+. ..++..++.+|.+.|++++|...+++......
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1111 45788999999999999999999999877543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=119.56 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
+..+|..+...|.+.|++++|++.|++..+..+. +..++..+...|.+.|++++|+..+++..... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678888999999999999999999998886443 77888889999999999999999999988762 235778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 902 (997)
.+...+++++|...+++..... +.+...+..++.+|.+.|++++|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~----------------------------------~~~~~~~~~lg~~~~~~g~~~~A~ 127 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN----------------------------------TVYADAYYKLGLVYDSMGEHDKAI 127 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----------------------------------ccchHHHHHHHHHHHHhCCchhHH
Confidence 9999999999999998876542 233557888999999999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+.|+++.+..|. +..+|..++.+|...|++++|++.|+++++ ..|+
T Consensus 128 ~~~~~~l~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 173 (184)
T 3vtx_A 128 EAYEKTISIKPG---FIRAYQSIGLAYEGKGLRDEAVKYFKKALE--KEEK 173 (184)
T ss_dssp HHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTHH
T ss_pred HHHHHHHHhcch---hhhHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCcc
Confidence 999999988776 788999999999999999999999999999 6675
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-12 Score=143.28 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=212.7
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHh
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNN----IVYDALIDGFCKVGKLDEAQMVFSKMLEH----GC-NPNVYT 711 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~ 711 (997)
.+..+...+...|++++|...|+++.... +.+. .++..+...|...|++++|...++++.+. +. .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456668889999999999999999875 3343 47888999999999999999999988764 11 123457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 001911 712 YGSLIDRLFKDKRLDLALKVISKMLED----S-YAPNVVIYTEMIDGLIKVGK-----------------TEEAYKVMLM 769 (997)
Q Consensus 712 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 769 (997)
+..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788889999999999999999987753 1 12234578888999999999 9999999988
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 770 MEEK----GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN----FVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 770 m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
..+. +..+ ...++..+...|...|++++|++.+++..+... .++ ..++..+..+|...|++++|..++++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7642 1111 234778888899999999999999999876310 112 34788899999999999999999998
Q ss_pred HHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---C
Q 001911 840 MKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV-PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSN---S 915 (997)
Q Consensus 840 m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~ 915 (997)
..... ... +.. .....+..++.+|...|++++|.+.++++....+. .
T Consensus 289 al~~~--------------------------~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 289 TLALA--------------------------VEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHH--------------------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHH--------------------------HHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 76521 000 000 11346778999999999999999999998865321 1
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 916 AASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.....++..++.+|...|++++|...++++++
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11245788899999999999999999999998
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-11 Score=135.22 Aligned_cols=306 Identities=10% Similarity=0.028 Sum_probs=214.1
Q ss_pred HHhcCChHHHHHHHHHHHhc--CC--CCCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCCH--
Q 001911 649 LCKVHKVREAHDLLDAMSVV--GC--EPNNIVYDALIDG--FCKVGKLDEAQ-----------MVFSKMLEHGCNPNV-- 709 (997)
Q Consensus 649 ~~~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~-- 709 (997)
+.+.+++++|..+++++... .. .++...|-.++.. ....++.+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 46789999999999998653 22 2333444444332 12233444444 666665543211111
Q ss_pred --HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----
Q 001911 710 --YTYGSLIDRLFKDKRLDLALKVISKMLED----SYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GCY---- 776 (997)
Q Consensus 710 --~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---- 776 (997)
..+......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+.+..+. ...
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 11223556678899999999999999864 2111 3467888999999999999999999998763 111
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhh
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAG 851 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 851 (997)
....+++.+...|...|++++|++.+++..+. +-.+ ...++..+..+|...|++++|...+++..+..
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~------- 254 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF------- 254 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 12357888889999999999999999998763 1111 13578889999999999999999999876521
Q ss_pred HHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--CcchhhHHHHHHH
Q 001911 852 YRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS--AASRNSTLLLIES 928 (997)
Q Consensus 852 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~ 928 (997)
.. .+..|. ..++..++.+|...|++++|.+.++++.+..+.. ......+..++..
T Consensus 255 -------------------~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 255 -------------------EE---SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312 (383)
T ss_dssp -------------------HH---TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------------Hh---hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 011133 3468889999999999999999999988652110 1123335678888
Q ss_pred HHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 929 LSLARK---IDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 929 ~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+...|+ +++|+..+++. +..|+ ..++..|+.+|...|++++|..++++.......
T Consensus 313 ~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 888999 77777777765 34454 568889999999999999999999988765433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-09 Score=121.67 Aligned_cols=429 Identities=12% Similarity=0.064 Sum_probs=253.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHH
Q 001911 503 FLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARK---PSQANELFETM 579 (997)
Q Consensus 503 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m 579 (997)
+..|+..+..++ -|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|++.
T Consensus 52 i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 52 IGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334444444433 47888888888887788888888888888776 34466677777777777777 88888888888
Q ss_pred HhCC-CCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhccCCCchhHHHHHhccCCC-CC-CceeHHHHHHH
Q 001911 580 LSKG-CIPNIVTFTALIDGHCKAGDI--------ERACRIYARMKGNAEISDVDIYFRVLDNNCK-EP-NVYTYGALIDG 648 (997)
Q Consensus 580 ~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~li~~ 648 (997)
+... ..|++..|...+....+.++. +...++|+.+.... |. .+ +...|...+..
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~v---------------G~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKC---------------AIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHT---------------TTTCSSCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh---------------CcccccchHHHHHHHHH
Confidence 7653 137777777777665554443 33446666655431 22 23 23466666654
Q ss_pred HH---------hcCChHHHHHHHHHHHhcCCCCCHHHHHH---HHHHHH----------hcCCHHHHHHHHHHHHHc--C
Q 001911 649 LC---------KVHKVREAHDLLDAMSVVGCEPNNIVYDA---LIDGFC----------KVGKLDEAQMVFSKMLEH--G 704 (997)
Q Consensus 649 ~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---li~~~~----------~~g~~~~A~~~~~~m~~~--g 704 (997)
.. ..++++.+.++|++.+......-..+|.. +...+. ...+++.|...+.++... +
T Consensus 195 ~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~ 274 (679)
T 4e6h_A 195 LEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKG 274 (679)
T ss_dssp HHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 33 23457788999999885321111233322 211110 011234444555443221 1
Q ss_pred CC---CC--------------------HHhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 705 CN---PN--------------------VYTYGSLIDRLFKDK-------RLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754 (997)
Q Consensus 705 ~~---p~--------------------~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 754 (997)
+. |. ...|...+..--..+ ..+.+..+|++++.. ++.+...|-..+..+
T Consensus 275 l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 275 LKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQ 353 (679)
T ss_dssp CCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHH
T ss_pred HhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 10 11 123444443322222 134456778888765 355778888888888
Q ss_pred HHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC---------CCC-----------
Q 001911 755 IKVGKTEEAY-KVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC---------APN----------- 813 (997)
Q Consensus 755 ~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~----------- 813 (997)
...|+.++|. ++|++.... ++.+...|..++....+.|++++|.++|++++.... .|+
T Consensus 354 ~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 8889998996 999999875 455777788888888899999999999999886410 142
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH--HHHhH-hHhHHHHHHHHHHhccCCCCCChhhHHHHH
Q 001911 814 -FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRK--VIEGF-SREFIVSLGLVNEMGKTDSVPIVPAYRILI 889 (997)
Q Consensus 814 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 889 (997)
...|...+....+.|..+.|..+|.+..+...+.....|.. .+... .++...|..+++..... ...+...|...+
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~ 511 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHH
Confidence 34688888888889999999999999876411111111111 11111 12245555555544432 111233444555
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+.....|+.+.|..+|+++....|........|...+.--...|+.+.+.++++++.+ ..|+
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~ 573 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPE 573 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 5566666777777777766665432112344555555555556666667777777666 3454
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=133.08 Aligned_cols=276 Identities=14% Similarity=0.098 Sum_probs=209.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHhH
Q 001911 642 YGALIDGLCKVHKVREAHDLLDAMSVVGCEPN----NIVYDALIDGFCKVGKLDEAQMVFSKMLEH----GCN-PNVYTY 712 (997)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~ 712 (997)
+......+...|++++|...|+++.... +.+ ...+..+...|...|++++|...++++.+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4455667889999999999999998875 334 467888999999999999999999987653 211 124577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 001911 713 GSLIDRLFKDKRLDLALKVISKMLEDSY-APN----VVIYTEMIDGLIKVGK--------------------TEEAYKVM 767 (997)
Q Consensus 713 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 767 (997)
..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888999999999999999998765310 112 3478888899999999 99999999
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 768 LMMEEK----GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLL 837 (997)
Q Consensus 768 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 837 (997)
++..+. +..| ....+..+...+...|++++|++.+++..+. +..+ ...++..+...+...|++++|..++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887542 1111 2346778888899999999999999998753 1111 1347888999999999999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--
Q 001911 838 EEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSN-- 914 (997)
Q Consensus 838 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 914 (997)
++..... ... +..+ ....+..++.+|...|++++|.+.++++....+.
T Consensus 247 ~~al~~~--------------------------~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 247 KKTLLLA--------------------------RQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHH--------------------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--------------------------Hhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 9876421 000 0011 1346778999999999999999999998765321
Q ss_pred -CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 915 -SAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 915 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
......++..++..+...|++++|...++++++
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 111245778899999999999999999999998
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-09 Score=119.57 Aligned_cols=437 Identities=10% Similarity=0.031 Sum_probs=270.8
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 001911 466 KAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGL---IEQARNWFD 542 (997)
Q Consensus 466 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~ 542 (997)
+.+..+++.+... +-|..+|..++..+.+.+.++.+..+|+.+...- +.....|..-+..-.+.|. ++.+..+|+
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444455555443 5678889999998888889999999999988763 4467788888888888888 999999999
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHH---------Hc
Q 001911 543 EMVKEGC-DPNVVTYTALIHAYLKARKP--------SQANELFETMLS-KGC-IP-NIVTFTALIDGHC---------KA 601 (997)
Q Consensus 543 ~m~~~g~-~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~---------~~ 601 (997)
+.+.... .|++..|...+.-..+.++. +.+.++|+..+. .|. .+ +...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9887641 37888888777665555443 334477776554 355 44 3567777765543 23
Q ss_pred CCHHHHHHHHHHHHhccCCCchhHH---HHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh--cCC----C-
Q 001911 602 GDIERACRIYARMKGNAEISDVDIY---FRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSV--VGC----E- 671 (997)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~- 671 (997)
++++.+..+|+++..........++ ...-.. + +..+...++.- ...+++.|...+.++.. .++ +
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~--~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD--V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH--H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh--c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 4577888999988753211111111 000000 0 00111111111 11233444455544321 011 0
Q ss_pred ----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 672 ----------P-----N---NIVYDALIDGFCKVG-------KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 672 ----------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
| + ...|...+.---..+ ..+.+..+|++++..-+. ....|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHH
Confidence 1 0 134444444322222 123456678877776433 6777777777777888888
Q ss_pred HHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHH
Q 001911 727 LAL-KVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC---------YPN------------VVTYTA 784 (997)
Q Consensus 727 ~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~~~~~ 784 (997)
+|. .+|++.... ++.+...|-..+...-+.|+++.|.++|+++.+... .|+ ...|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 886 888888764 345666677777778888888888888888775310 131 235777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHh--
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSK-GCAPNFVTYRVLINHCCAS-GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFS-- 860 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~-- 860 (997)
.+....+.|..+.|..+|.+..+. + .+....|...+..-.+. ++.+.|.++|+...+. +|.....+...++-..
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 777777788888888888888775 2 12234444333333344 4488888888888776 3444444444444332
Q ss_pred HhHHHHHHHHHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 861 REFIVSLGLVNEMGKTDSVP--IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 861 ~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
.+...|-.++++.......+ ....|...+..-.+.|+.+.+..+.+++.+..|.
T Consensus 518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 35667777788776554322 2457888888888999999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-11 Score=144.52 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
+...|+.|...|.+.|++++|++.|++.++. .| +..+|..+..+|.+.|++++|+..+++..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------------ 73 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------------ 73 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 3567777888888888888888888888775 45 47778888888888888888888888776542
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI 935 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 935 (997)
|+ ..+|..++.+|...|++++|++.|+++.+..|+ +..+|..++.+|...|++
T Consensus 74 -----------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~---~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 74 -----------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNI 127 (723)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCH
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCH
Confidence 43 457788888888888888888888888887765 777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 936 DKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 936 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
++|++.|+++++ +.|+ ..++..|+.+|...|+|++|.+.++++.+.
T Consensus 128 ~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 128 PEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 888888888888 6786 778888888888888888888888777654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-11 Score=138.33 Aligned_cols=216 Identities=9% Similarity=-0.027 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001911 690 LDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRL-DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVML 768 (997)
Q Consensus 690 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 768 (997)
+++++..++....... .+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555566665554432 3666777777778888888 88888888877653 3457788888888888899999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc--------CCH
Q 001911 769 MMEEKGCYPNVVTYTAMIDGFGKV---------GKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCAS--------GLL 830 (997)
Q Consensus 769 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~--------g~~ 830 (997)
++.+. .|+...+..+...+... |++++|++.|++.++. .| +...|..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 88875 46678888888888888 9999999999999886 45 688899999999988 999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
++|...+++..+.. | ....+...|..++.+|...|++++|++.|+++.+
T Consensus 238 ~~A~~~~~~al~~~-p------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQAEKVD-R------------------------------KASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHC-G------------------------------GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-C------------------------------CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999987642 0 0002456889999999999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 911 FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
..|. +..++..++.++...|++++|++.+.++
T Consensus 287 l~p~---~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 287 LDPA---WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCTT---CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8876 7888999999999999999999876554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-10 Score=120.36 Aligned_cols=219 Identities=11% Similarity=0.008 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 691 DEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK-------DKRL-------DLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 691 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
++|...|+++++..+. +...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4555666666554322 44555555554432 3443 5555555555542112233455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 001911 757 VGKTEEAYKVMLMMEEKGCYP-NVV-TYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC-ASGLLDEA 833 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~A 833 (997)
.|++++|.++|+++.+. .| +.. .|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555543 22 222 45555555555555555555555555532 112333332222211 24555555
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 834 HNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 834 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++...++
T Consensus 189 ~~~~~~al~~~----------------------------------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 189 FKIFELGLKKY----------------------------------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHHHHHHH----------------------------------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhC----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 55555544321 11233455555555555555555555555555311
Q ss_pred CC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 914 NS-AASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 914 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.. ......|..++..+...|++++|..+++++.+
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 01334455555555555555555555555555
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-11 Score=128.70 Aligned_cols=215 Identities=15% Similarity=0.090 Sum_probs=156.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------C
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-------GCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK------G 809 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 809 (997)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777777888888888888888877762 12224556777788888888888888888887753 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 810 CAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 810 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
-.| ...++..+...|...|++++|..+++++.+.. .+............+..+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR--------------------------EKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--------------------------HHHHCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH--------------------------HHhcCCCChHHHHHHHHH
Confidence 223 36678889999999999999999998876521 011000111123467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------
Q 001911 889 IDHYIKAGRLEVALELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD-------------- 949 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------- 949 (997)
+..|...|++++|++.++++.+. .+.......++..++.++...|++++|...++++++..
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 89999999999999999988764 11112355678888999999999999999999988621
Q ss_pred ---------------------------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 950 ---------------------------------GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 950 ---------------------------------~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
..|+ ..++..++.+|.+.|++++|.+++++..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1243 578999999999999999999999987653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=8e-10 Score=117.81 Aligned_cols=238 Identities=9% Similarity=0.008 Sum_probs=169.0
Q ss_pred CceeHHHHHHHHHhc----CCh----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHH
Q 001911 638 NVYTYGALIDGLCKV----HKV----REAHDLLDAMSVVGCEPNNIVYDALIDGFCK-------VGKL-------DEAQM 695 (997)
Q Consensus 638 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~ 695 (997)
+...|...+..-.+. ++. ++|..+|++..... +.+...|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 344566666654332 233 67778888887754 5667777777777653 4775 78888
Q ss_pred HHHHHHH-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 696 VFSKMLE-HGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN-VV-IYTEMIDGLIKVGKTEEAYKVMLMMEE 772 (997)
Q Consensus 696 ~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 772 (997)
+|++.++ ..+. +...|..++..+.+.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|.++|+++.+
T Consensus 86 ~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 86 IYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888887 3432 5567888888888888888888888888874 343 33 788888888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 001911 773 KGCYPNVVTYTAMIDGFG-KVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVA 850 (997)
Q Consensus 773 ~g~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 850 (997)
... ++...|...+.... ..|++++|.++|++.++. .| +...|..++..+.+.|++++|..+|++.....
T Consensus 163 ~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------ 233 (308)
T 2ond_A 163 DAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG------ 233 (308)
T ss_dssp STT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS------
T ss_pred cCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc------
Confidence 532 34445544433322 368888888888888775 34 57778888888888888888888888876631
Q ss_pred hHHHHHHhHhHhHHHHHHHHHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 851 GYRKVIEGFSREFIVSLGLVNEMGKTDSVP--IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 851 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
...| ....|..++..+.+.|+.++|..+++++.+..|.
T Consensus 234 --------------------------~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 234 --------------------------SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp --------------------------SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred --------------------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 0123 3457777888888888888888888888887765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.8e-12 Score=133.07 Aligned_cols=247 Identities=13% Similarity=0.006 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-C
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEH-------GCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLED------S-Y 740 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~ 740 (997)
.++..+...+...|++++|..+++++.+. .......++..+...+...|++++|...++++++. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33444444455555555555555544442 11112334445555555555555555555555432 1 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----
Q 001911 741 APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK------GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----- 808 (997)
Q Consensus 741 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 808 (997)
+.....+..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|+++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 223456667777777777777777777776653 1112 3456777778888888888888888887763
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC----Ch
Q 001911 809 -GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP----IV 882 (997)
Q Consensus 809 -g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~ 882 (997)
+..| ...++..+..+|...|++++|..+++++.+.... ..+. ... ...+ ..
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~-----------~~~--~~~~~~~~~~ 244 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE----------REFG-----------SVD--DENKPIWMHA 244 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------HHHC-------------------CCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------hcCC-----------CCC--cchHHHHHHH
Confidence 2233 3567888889999999999999999887652100 0000 000 0000 01
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..+..++..+...+.+.+|...++......|. ...++..++.+|...|++++|.+.++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPT---VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCch---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12333445556667777777888887765443 778889999999999999999999999987
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-10 Score=126.78 Aligned_cols=305 Identities=10% Similarity=0.026 Sum_probs=210.9
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHH--HHhcCChHHHH-----------HHHHH
Q 001911 598 HCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDG--LCKVHKVREAH-----------DLLDA 664 (997)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~ 664 (997)
+.+.+++++|..+++++....... ...++...|-.++.. ....+.++.+. +.++.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~------------~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQM------------EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTS------------CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 356889999999988886532100 012223333333321 11223333344 66666
Q ss_pred HHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 665 MSVVGCEPN----NIVYDALIDGFCKVGKLDEAQMVFSKMLEH----GCNP-NVYTYGSLIDRLFKDKRLDLALKVISKM 735 (997)
Q Consensus 665 m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 735 (997)
+.....+.+ ...+......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++.
T Consensus 90 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544221111 111223566778899999999999999874 1111 3457888999999999999999999998
Q ss_pred HhC----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 001911 736 LED----S--YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC-YPN----VVTYTAMIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 736 ~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~ 804 (997)
.+. + ......+++.+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|++.+++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 753 1 011245788899999999999999999998875311 112 24788899999999999999999999
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 805 MSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 805 m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
..+. +..| ...++..+..++...|++++|..++++..... .+. +..
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~---~~~ 300 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS--------------------------QKA---GDV 300 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHH---TCH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------------------HHc---CCH
Confidence 8872 3224 46789999999999999999999999876421 000 001
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 880 PIVPAYRILIDHYIKAGR---LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.....+..++..|...|+ +++|+..+++.... ......+..++..|...|++++|...++++++
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~----~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY----ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112235678889999999 88888888887432 12556788899999999999999999999987
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-10 Score=124.30 Aligned_cols=315 Identities=11% Similarity=0.012 Sum_probs=215.6
Q ss_pred CCCceeHHHHHHHH--HhcCChHHHHHHHHHHHhc--CC--CCCHHHHHHHHHHH--HhcCCHHHHH---------HHHH
Q 001911 636 EPNVYTYGALIDGL--CKVHKVREAHDLLDAMSVV--GC--EPNNIVYDALIDGF--CKVGKLDEAQ---------MVFS 698 (997)
Q Consensus 636 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~li~~~--~~~g~~~~A~---------~~~~ 698 (997)
.|+..+-+.|-+.| .+.+++++|.++++++... .. ..+...|-.++..- ...+....+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44455555566666 7899999999999987652 22 22334444444321 1112222222 5555
Q ss_pred HHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 699 KMLEHGCNPNV----YTYGSLIDRLFKDKRLDLALKVISKMLEDSY-AP----NVVIYTEMIDGLIKVGKTEEAYKVMLM 769 (997)
Q Consensus 699 ~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 769 (997)
.+.......+. ..+......+...|++++|+..+++..+... .+ ...++..+...|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1233345567789999999999999876411 12 245788899999999999999999998
Q ss_pred HHHC----CC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 770 MEEK----GC-YP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLE 838 (997)
Q Consensus 770 m~~~----g~-~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 838 (997)
..+. +- .+ ...+++.+...|...|++++|++.|++..+. +-.+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8753 11 11 2457788899999999999999999998762 1111 24578889999999999999999999
Q ss_pred HHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--C
Q 001911 839 EMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSN--S 915 (997)
Q Consensus 839 ~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~ 915 (997)
+..... ... + .|. ..++..++..|.+.|++++|.+.++++.+..+. .
T Consensus 247 ~al~~~--------------------------~~~---~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 247 KAAKVS--------------------------REK---V-PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHH--------------------------HHH---C-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHH--------------------------Hhh---C-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 876521 000 1 122 446788999999999999999999999875322 1
Q ss_pred CcchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 916 AASRNSTLLLIESLSLARK---IDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
......+..+...+...++ +++|+..+++ .+..|+ ...+..++.+|...|++++|...+++..+.
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2234455667777777888 7888887776 233454 567889999999999999999999987654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-10 Score=113.40 Aligned_cols=162 Identities=12% Similarity=-0.065 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVL 820 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l 820 (997)
.|+..+..+...+...|++++|.+.|++..+....++...+..+..++...|++++|++.+++..+. .| +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4567788888888899999999999999888755467777777888899999999999999999886 56 46788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEV 900 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 900 (997)
..+|...|++++|...+++..+.. |.+...... -...|..++..+...|++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------------------------~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKL--------------------------YAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH--------------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHH--------------------------HHHHHHHHhHHHHHhccHHH
Confidence 999999999999999999887643 111000000 00357788899999999999
Q ss_pred HHHHHHHHhcCCCCCCc--chhhHHHHHHHHHhcCCH
Q 001911 901 ALELHEEMTSFSSNSAA--SRNSTLLLIESLSLARKI 935 (997)
Q Consensus 901 A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 935 (997)
|++.++++.+..| . +...+..++.++...|+.
T Consensus 136 A~~~~~~al~~~p---~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 136 AEENYKHATDVTS---KKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHTTSSC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---CcccHHHHHHHHHHHHHHHHH
Confidence 9999999998764 3 467888888888777665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-10 Score=111.14 Aligned_cols=165 Identities=18% Similarity=0.136 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGF 859 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 859 (997)
..+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|..+++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 345566667777788888888877776642 2356777777888888888888888887766532
Q ss_pred hHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 001911 860 SREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAF 939 (997)
Q Consensus 860 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 939 (997)
+.+...+..++..|...|++++|.+.++++....|. +...+..++..+...|++++|.
T Consensus 73 -------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 73 -------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---NFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---hHHHHHHHHHHHHHcCcHHHHH
Confidence 223456677788888888888888888888776654 6677778888888888888888
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 940 ELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 940 ~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
..++++++ ..|+ ..++..++.+|...|++++|...++++....
T Consensus 131 ~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 131 DSFKIALG--LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888887 3454 6778888888888888888888888776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-10 Score=115.73 Aligned_cols=170 Identities=11% Similarity=-0.087 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
.|+..+......+...|++++|++.|++.++....++...+..+..++...|++++|+..+++.....
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------ 72 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------------ 72 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------------
Confidence 36788888999999999999999999999987533678888889999999999999999999987643
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch-------hhHHHHHHH
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR-------NSTLLLIES 928 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~l~~~ 928 (997)
|+ ...+..++.+|...|++++|++.++++.+..|. +. .+|..++..
T Consensus 73 -----------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 73 -----------------------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG---NATIEKLYAIYYLKEGQK 126 (228)
T ss_dssp -----------------------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhHH
Confidence 44 457888999999999999999999999998775 55 568889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCH---------------------------HHHHHHHH
Q 001911 929 LSLARKIDKAFELYVDMIRKDGSPE---LSTFVHLIKGLIRVNKW---------------------------EEALQLSY 978 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~y~~~g~~---------------------------~eA~~~~~ 978 (997)
+...|++++|+..|+++++ ..|+ ..++..++.+|...|+. ++|+..++
T Consensus 127 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLG 204 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 6786 47899999999999998 89999999
Q ss_pred HhhccCCc
Q 001911 979 SICHTDIN 986 (997)
Q Consensus 979 ~~~~~~~~ 986 (997)
+..+....
T Consensus 205 ~a~~l~p~ 212 (228)
T 4i17_A 205 EAVTLSPN 212 (228)
T ss_dssp HHHHHCTT
T ss_pred HHhhcCCC
Confidence 88876554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-09 Score=117.86 Aligned_cols=273 Identities=12% Similarity=0.015 Sum_probs=185.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHH
Q 001911 680 LIDGFCKVGKLDEAQMVFSKMLEHGCNPNVY----TYGSLIDRLFKDKRLDLALKVISKMLEDSY-APN----VVIYTEM 750 (997)
Q Consensus 680 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l 750 (997)
....+...|++++|...+++........+.. ++..+...+...|++++|...+++..+... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777777776654322222 445556667777888888887777654210 011 2335667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--C--CHHHHHH
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEK----GCY--P-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA--P--NFVTYRV 819 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~~~~~ 819 (997)
...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.....-. + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 77888889999999888887653 222 2 2345666778888999999999999988763211 1 2457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH----HHHHHHHHhc
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY----RILIDHYIKA 895 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~ 895 (997)
+...+...|++++|..++++........ + .| .... ..++..+...
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~-----------------------------~-~~-~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNG-----------------------------K-YH-SDWISNANKVRVIYWQMT 228 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTS-----------------------------C-CC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcc-----------------------------C-cc-hhHHHHHHHHHHHHHHHC
Confidence 8899999999999999999876431000 0 01 1111 1234557789
Q ss_pred CCHHHHHHHHHHHhcCCCCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCC
Q 001911 896 GRLEVALELHEEMTSFSSNS-AASRNSTLLLIESLSLARKIDKAFELYVDMIRK----DGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
|++++|.+.++++....+.. ......+..++..+...|++++|...++++.+. |..++ ..++..++.+|...|+
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 99999999999988754431 112335677888899999999999999988662 11112 2478889999999999
Q ss_pred HHHHHHHHHHhhcc
Q 001911 970 WEEALQLSYSICHT 983 (997)
Q Consensus 970 ~~eA~~~~~~~~~~ 983 (997)
+++|...+++....
T Consensus 309 ~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 309 KSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-10 Score=134.12 Aligned_cols=165 Identities=13% Similarity=0.039 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVL 820 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l 820 (997)
.+...|+.|...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.|++.++. .| +...|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34678889999999999999999999998886433 6788889999999999999999999999885 56 57889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 899 (997)
..+|...|++++|++.+++..+.. |+ ..+|+.++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-----------------------------------P~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-----------------------------------PAFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998877642 43 557888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+|++.|+++++..|+ +..++..++.++...|++++|.+.++++++
T Consensus 129 eAi~~~~~Al~l~P~---~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 129 EAIASYRTALKLKPD---FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999998876 788999999999999999999999988876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=7.6e-10 Score=107.69 Aligned_cols=164 Identities=16% Similarity=0.077 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHC 824 (997)
Q Consensus 745 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~ 824 (997)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555666666677777777776665542 2255666666667777777777777777766642 22566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001911 825 CASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 825 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
...|++++|..+++++.... +.+...+..++..|...|++++|++.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN----------------------------------PINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC----------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 77777777777777665432 12344566677777777777777777
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++++.+..|. +...+..++.++...|++++|...++++++
T Consensus 133 ~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPN---EGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777766543 566777777777777777777777777766
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-10 Score=118.78 Aligned_cols=201 Identities=14% Similarity=0.042 Sum_probs=142.9
Q ss_pred cCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHH
Q 001911 757 VGKTEEAYKVMLMMEE-------KGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK------GCAP-NFVTYRVLIN 822 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~~~~~l~~ 822 (997)
.|++++|..++++..+ ...+....++..+...|...|++++|+..+++..+. +-.| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555443 111223556777778888888888888888887653 2223 3667888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 902 (997)
+|...|++++|..++++..... .+......+.....+..++..|...|++++|+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIR--------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHH--------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHH--------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998876421 11111111112346788899999999999999
Q ss_pred HHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------------------
Q 001911 903 ELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD---------------------------- 949 (997)
Q Consensus 903 ~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------- 949 (997)
+.++++.+. .+..+....++..++.++...|++++|...++++++..
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 999998775 11222356788889999999999999999999988630
Q ss_pred -------------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 950 -------------------GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 950 -------------------~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
..|+ ..++..++.+|...|++++|..++++.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1233 568889999999999999999999987653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-09 Score=117.11 Aligned_cols=235 Identities=7% Similarity=-0.053 Sum_probs=176.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCC--
Q 001911 593 ALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGC-- 670 (997)
Q Consensus 593 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 670 (997)
.....+...|++++|...|+++........ ..+....++..+...|...|++++|...+.+......
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVS-----------DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCC-----------ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 344566789999999999999876431100 0011245678888899999999999999988765311
Q ss_pred ---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 001911 671 ---E-PNNIVYDALIDGFCKVGKLDEAQMVFSKMLEH----GCN-PNVYTYGSLIDRLFKDKRLDLALKVISKMLE---- 737 (997)
Q Consensus 671 ---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 737 (997)
. ....+++.+...|...|++++|.+.|.+..+. +.. ....++..+...|...|++++|...+++..+
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 1 12457888999999999999999999988764 111 1234677889999999999999999999887
Q ss_pred -CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhCC
Q 001911 738 -DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKG----CYPNVVTYTAMIDGFGKVGK---VDKCLELLRQMSSKG 809 (997)
Q Consensus 738 -~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g 809 (997)
.. +....++..+...|.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|+.++++. +
T Consensus 255 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~ 330 (378)
T 3q15_A 255 KVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---N 330 (378)
T ss_dssp HCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---T
T ss_pred hCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---C
Confidence 43 3336788889999999999999999999988742 12223456666667778888 88888887762 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 810 CAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 810 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
..| ....+..+...|...|++++|..++++..+
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233 345677899999999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-09 Score=115.16 Aligned_cols=275 Identities=14% Similarity=0.042 Sum_probs=196.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH----HhHH
Q 001911 643 GALIDGLCKVHKVREAHDLLDAMSVVGCEPNN----IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN-PNV----YTYG 713 (997)
Q Consensus 643 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~ 713 (997)
......+...|++++|...+++........+. .+++.+...+...|++++|...+++..+.... ++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445667899999999999998875423333 25667778889999999999999988764211 122 3356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 001911 714 SLIDRLFKDKRLDLALKVISKMLED----SYA--P-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY----PNVVTY 782 (997)
Q Consensus 714 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~ 782 (997)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6778889999999999999988753 221 2 2356677888999999999999999998764221 124567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 783 TAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-FVTYR-----VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 783 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
..+...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|..++++........
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~--------- 248 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN--------- 248 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc---------
Confidence 7888889999999999999999875311221 11122 23345779999999999998875432000
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--Ccc-hhhHHHHHHHHHhcC
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS--AAS-RNSTLLLIESLSLAR 933 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~g 933 (997)
.......+..++..+...|++++|.+.++++....+.. ... ...+..++.++...|
T Consensus 249 ---------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 249 ---------------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp ---------------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 00111245678899999999999999999987542110 112 236677888899999
Q ss_pred CHHHHHHHHHHHHH
Q 001911 934 KIDKAFELYVDMIR 947 (997)
Q Consensus 934 ~~~~A~~~~~~~~~ 947 (997)
++++|...++++.+
T Consensus 308 ~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 308 RKSDAQRVLLDALK 321 (373)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999876
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=112.99 Aligned_cols=214 Identities=10% Similarity=0.004 Sum_probs=155.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC-HHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPN---VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN-FVT 816 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~~ 816 (997)
.+...+-.+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|+..|++.++... .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566667777888888888888888888875322 3 56777788888899999999999999887521 122 556
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 817 YRVLINHCCA--------SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 817 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
+..+..++.. .|++++|...++++.... |......... ..+..+.. -....+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~------------~~~~~~~~----~~~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDAT------------QKIRELRA----KLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHH------------HHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHH------------HHHHHHHH----HHHHHHHHH
Confidence 7778888888 999999999999988764 2222111111 00000000 001125678
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC----H
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----------RKIDKAFELYVDMIRKDGSPE----L 954 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~----~ 954 (997)
+.+|...|++++|+..|+++.+..|........+..++.+|... |++++|+..|+++++ ..|+ .
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~ 232 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDSPLLR 232 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTCTHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCChHHH
Confidence 99999999999999999999988776555677889999999866 899999999999999 5676 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 001911 955 STFVHLIKGLIRVNKWEEALQ 975 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~ 975 (997)
.+...+..++.+.|+++++..
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHhhhhhH
Confidence 467778888888777766543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-09 Score=113.46 Aligned_cols=215 Identities=13% Similarity=0.011 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHH
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK----GCYPN-VVTYTAMIDGFGKVGKVDKC 798 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A 798 (997)
++++|...|++. +..|...|++++|.+.|.+..+. |-+++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777776665 33466678888888888776643 21111 45777888888888888888
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 799 LELLRQMSSK----GCAP-NFVTYRVLINHCCAS-GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 799 ~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
+..+++.++. |-.+ -..++..+..+|... |++++|+..+++..+.. ..
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--------------------------~~ 150 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--------------------------AQ 150 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--------------------------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--------------------------Hh
Confidence 8888887653 1111 145788899999996 99999999999876531 00
Q ss_pred hccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 873 MGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS----RNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 873 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+..+. ..++..++..|...|++++|++.|+++.+..|..... ...+..++.++...|++++|+..|+++++
T Consensus 151 ---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 151 ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred ---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 000011 2357889999999999999999999999877653211 12577888999999999999999999988
Q ss_pred cCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHhhccC
Q 001911 948 KDGSPEL------STFVHLIKGLI--RVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 948 ~~~~p~~------~~~~~l~~~y~--~~g~~~eA~~~~~~~~~~~ 984 (997)
+.|+. ..+..++..|. ..+++++|+..++++...+
T Consensus 228 --l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 228 --EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp --C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred --hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 66752 13455677665 5678999999998876644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-09 Score=108.56 Aligned_cols=172 Identities=15% Similarity=0.069 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-N---FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGY 852 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 852 (997)
.+...+..+...+.+.|++++|+..|+++++. .| + ...+..+..+|...|++++|...+++...... .
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~----- 84 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-I----- 84 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T-----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-C-----
Confidence 35677778888899999999999999999986 35 3 67889999999999999999999999877531 0
Q ss_pred HHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHh--------cCCHHHHHHHHHHHhcCCCCCCcchhhH-
Q 001911 853 RKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIK--------AGRLEVALELHEEMTSFSSNSAASRNST- 922 (997)
Q Consensus 853 ~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 922 (997)
.|. ..++..++.++.. .|++++|++.|+++.+..|+........
T Consensus 85 --------------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 138 (261)
T 3qky_A 85 --------------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ 138 (261)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred --------------------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH
Confidence 122 3467789999999 9999999999999999887633233332
Q ss_pred -------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CCHHHHHH
Q 001911 923 -------------LLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHLIKGLIRV----------NKWEEALQ 975 (997)
Q Consensus 923 -------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~y~~~----------g~~~eA~~ 975 (997)
..++.+|...|++++|+..|+++++ ..|+ ..++..++.+|... |++++|+.
T Consensus 139 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 139 KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 6779999999999999999999998 4564 46899999999977 99999999
Q ss_pred HHHHhhccC
Q 001911 976 LSYSICHTD 984 (997)
Q Consensus 976 ~~~~~~~~~ 984 (997)
.++++....
T Consensus 217 ~~~~~~~~~ 225 (261)
T 3qky_A 217 LYERLLQIF 225 (261)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 999987744
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.7e-09 Score=104.79 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=72.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhh--------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNS--------------TLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+...+...|++++|+..|+++.+..|++..-... ...++..+...|++++|+..|+++++ ..|+
T Consensus 102 ~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~ 179 (225)
T 2yhc_A 102 VDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPD 179 (225)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTT
T ss_pred cchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcC
Confidence 4445556789999999999999988764321111 14567788899999999999999999 5575
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 954 ----LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 954 ----~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
..++..++.+|.+.|++++|++.++.+...+
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 2689999999999999999999999887643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-08 Score=101.26 Aligned_cols=248 Identities=9% Similarity=0.013 Sum_probs=174.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
+-..-.|++..++.-...+ ..........-+.++|...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3445578998888743332 2122233444566788888887642 12334444444444433 322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001911 727 LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC-YPNVVTYTAMIDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 805 (997)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 788888887765 45666667888999999999999999999877654 225677788889999999999999999999
Q ss_pred HhCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccC
Q 001911 806 SSKGCAP-----NFVTYRVLINH--CCASG--LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKT 876 (997)
Q Consensus 806 ~~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 876 (997)
.+. .| +..+...++.+ ....| ++.+|..+|+++.+.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-------------------------------- 208 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-------------------------------- 208 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------------------------------
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------------------------------
Confidence 885 57 35666666666 33344 9999999999987653
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 877 DSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS-------AASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 877 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
|+......+.+++...|++++|.+.++.+.+..|.. +.++.++..++......|+ +|.++++++.+
T Consensus 209 ---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-- 281 (310)
T 3mv2_B 209 ---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-- 281 (310)
T ss_dssp ---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--
T ss_pred ---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--
Confidence 442222334448999999999999999877652110 1378888777777777787 89999999999
Q ss_pred CCCC
Q 001911 950 GSPE 953 (997)
Q Consensus 950 ~~p~ 953 (997)
..|+
T Consensus 282 ~~P~ 285 (310)
T 3mv2_B 282 LDHE 285 (310)
T ss_dssp TTCC
T ss_pred hCCC
Confidence 7787
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-09 Score=105.73 Aligned_cols=130 Identities=12% Similarity=0.005 Sum_probs=105.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
.+..+|...|++++|...+++..+.. +.+...+..++.+|...|++
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~lg~~~~~~g~~ 104 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA----------------------------------PNNVDCLEACAEMQVCRGQE 104 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC----------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 38899999999999999999987753 23456888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK--IDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQL 976 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~ 976 (997)
++|++.|+++.+..|+ +..++..++.+|...|+ .+.+...++++.. ..|...++..++.++...|++++|+..
T Consensus 105 ~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~ 179 (208)
T 3urz_A 105 KDALRMYEKILQLEAD---NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNS 179 (208)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999876 88999999999877654 5566777777654 233345677889999999999999999
Q ss_pred HHHhhccCCcc
Q 001911 977 SYSICHTDINW 987 (997)
Q Consensus 977 ~~~~~~~~~~~ 987 (997)
+++.+......
T Consensus 180 ~~~al~l~P~~ 190 (208)
T 3urz_A 180 LQKVILRFPST 190 (208)
T ss_dssp HHHHTTTSCCH
T ss_pred HHHHHHhCCCH
Confidence 99998876553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.2e-10 Score=103.97 Aligned_cols=144 Identities=10% Similarity=-0.019 Sum_probs=114.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhH
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREF 863 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 863 (997)
|...+...|++++|+..+++.... .| +...+..+...|...|++++|+..+++..+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------------------- 61 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------------------- 61 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Confidence 344566778899999999888764 45 35567788899999999999999999887643
Q ss_pred HHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHH-H
Q 001911 864 IVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFEL-Y 942 (997)
Q Consensus 864 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~ 942 (997)
+.+..+|..++.+|...|++++|+..|+++.+..|. +..++..++.+|...|++++|.+. +
T Consensus 62 ---------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 62 ---------------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT---QKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 223568888999999999999999999999988876 788899999999999998776655 5
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 943 VDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 943 ~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
+++++ +.|+ +.++...+.++...|+
T Consensus 124 ~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 124 ERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 88888 6785 7888888888888875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-09 Score=110.58 Aligned_cols=209 Identities=13% Similarity=-0.026 Sum_probs=125.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLED------S-YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-----GC-- 775 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-- 775 (997)
.++..+...+...|++++|...++++.+. + .+....++..+...|...|++++|.+.+.++.+. +.
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34445555555555555555555555432 1 1123456667777777777777777777776653 11
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 001911 776 YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK------GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTH 848 (997)
Q Consensus 776 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 848 (997)
+....++..+...|...|++++|++.+++..+. +-.| ...++..+..+|...|++++|..+++++....
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---- 199 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA---- 199 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----
Confidence 123556777888888888888888888887764 1133 35678889999999999999999999876521
Q ss_pred hhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCC------HHHHHHHHHHHhcCCCCCCcchhh
Q 001911 849 VAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGR------LEVALELHEEMTSFSSNSAASRNS 921 (997)
Q Consensus 849 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~ 921 (997)
.+.......+. ...+..+...+...+. +.++...++...... .....+
T Consensus 200 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 254 (283)
T 3edt_B 200 ----------------------HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS---PTVNTT 254 (283)
T ss_dssp ----------------------HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC---HHHHHH
T ss_pred ----------------------HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC---HHHHHH
Confidence 00000001122 2234444444443332 334444444333222 235677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 922 TLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 922 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+..++..|...|++++|...++++++
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999876
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-09 Score=128.00 Aligned_cols=173 Identities=14% Similarity=0.058 Sum_probs=113.0
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 001911 720 FKDKRLDLALKVISKML--------EDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK 791 (997)
Q Consensus 720 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 791 (997)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|.+.|+++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56777777777777776 322 334556666777777777777777777777765322 56667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLV 870 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 870 (997)
.|++++|++.|++.++. .| +...|..+..++...|++++ ...+++..+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------------------------- 530 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------------------------- 530 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------------------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------------------------
Confidence 77777777777777764 34 45666777777777777777 77776665532
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 871 NEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 871 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
+.+...|..++.+|.+.|++++|++.|+++.+..|. +..++..++.++...++
T Consensus 531 --------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 --------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH---FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT---HHHHHHHHHHHTC----
T ss_pred --------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc---cHHHHHHHHHHHHccCC
Confidence 123446667777777777777777777777766654 56666667766655554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-09 Score=102.55 Aligned_cols=138 Identities=16% Similarity=0.069 Sum_probs=105.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHh
Q 001911 784 AMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSRE 862 (997)
Q Consensus 784 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 862 (997)
.+...|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...+++..+..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------ 118 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE------------------ 118 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------
Confidence 3788889999999999999999886 46 68889999999999999999999999987643
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGR--LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
+.+..++..++.+|...|+ .+.+...++++.... +....+..++.++...|++++|+.
T Consensus 119 ----------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~g~~~~~~~~~~~A~~ 178 (208)
T 3urz_A 119 ----------------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT----KMQYARYRDGLSKLFTTRYEKARN 178 (208)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC----HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHccCHHHHHH
Confidence 2235578888888876654 455666666665422 344566677888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH
Q 001911 941 LYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 941 ~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
.|+++++ +.|+..+...|.++
T Consensus 179 ~~~~al~--l~P~~~~~~~l~~i 199 (208)
T 3urz_A 179 SLQKVIL--RFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHTT--TSCCHHHHHHHHHH
T ss_pred HHHHHHH--hCCCHHHHHHHHHH
Confidence 9999998 78987666555554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-08 Score=108.10 Aligned_cols=205 Identities=12% Similarity=-0.022 Sum_probs=132.8
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHH
Q 001911 719 LFKDKRLDLALKVISKMLED----SYAPN-VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY-PN----VVTYTAMIDG 788 (997)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~ 788 (997)
|...|++++|...|++..+. +.+++ ..+|+.+..+|.+.|++++|+..+++..+.... .+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666666555554432 21111 346667777777777777777777766542100 01 3467788888
Q ss_pred Hhcc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHh
Q 001911 789 FGKV-GKVDKCLELLRQMSSKGCA-PN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSRE 862 (997)
Q Consensus 789 ~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 862 (997)
|... |++++|+..|++.++.... .+ ..++..+...+...|++++|+..+++..........
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------- 193 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL------------- 193 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-------------
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-------------
Confidence 8886 9999999999998763100 11 457888999999999999999999998764310000
Q ss_pred HHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc--hhhHHHHHHHHH--hcCCHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS--RNSTLLLIESLS--LARKIDK 937 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~--~~g~~~~ 937 (997)
.... ...|..++.++...|++++|+..++++.+..|..... ...+..++..+. ..+++++
T Consensus 194 ---------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 194 ---------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp ---------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0000 1256778899999999999999999999887653221 123444555554 4578999
Q ss_pred HHHHHHHHHHcCCCCC
Q 001911 938 AFELYVDMIRKDGSPE 953 (997)
Q Consensus 938 A~~~~~~~~~~~~~p~ 953 (997)
|+..|+++.+ +.|+
T Consensus 259 A~~~~~~~~~--l~~~ 272 (292)
T 1qqe_A 259 HCKEFDNFMR--LDKW 272 (292)
T ss_dssp HHHHHTTSSC--CCHH
T ss_pred HHHHhccCCc--cHHH
Confidence 9999988776 5564
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-08 Score=98.68 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHH
Q 001911 728 ALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG----KVDKCLELLR 803 (997)
Q Consensus 728 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~~ 803 (997)
|++.|++..+.| ++..+..|...|...+++++|.+.|++..+.| ++..+..|...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555432 44445555555555555555555555555443 34444444444444 3 4555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 001911 804 QMSSKGCAPNFVTYRVLINHCCA----SGLLDEAHNLLEEMK 841 (997)
Q Consensus 804 ~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 841 (997)
+..+.| +...+..|...|.. .+++++|..++++..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 116 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA 116 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 554432 33444444444444 445555555554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.2e-08 Score=100.90 Aligned_cols=218 Identities=10% Similarity=0.010 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc---CC
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG--KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF----GKV---GK 794 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~ 794 (997)
..++|+++++.++... +-+...|+.-...+...| ++++++++++.+.....+ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3456777777776643 334556666666666667 788888888877776443 455555444444 334 67
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHH
Q 001911 795 VDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLD--EAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871 (997)
Q Consensus 795 ~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 871 (997)
+++++++++++.+. .| |..+|..-..++.+.|.++ +++.+++++.+..
T Consensus 126 ~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--------------------------- 176 (306)
T 3dra_A 126 PYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--------------------------- 176 (306)
T ss_dssp THHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---------------------------
Confidence 88888888888875 34 7788888877788888877 8888888887654
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH-HHHHHHHHH
Q 001911 872 EMGKTDSVPIVPAYRILIDHYIKAGR------LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI-DKAFELYVD 944 (997)
Q Consensus 872 ~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 944 (997)
.-+..+|+....++...|+ ++++++.+++++...|. |..+|..+...+.+.|+. +++..+.++
T Consensus 177 -------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~---n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 177 -------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ---NPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp -------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred -------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC---CccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 2334456666666666665 88888888888887776 888888888888888773 445556666
Q ss_pred HHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 945 MIRKD-GSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 945 ~~~~~-~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+++.+ ..| ++.++..|+++|.+.|+.++|++.++.+.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 65522 123 477888888888888888888888888765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-08 Score=91.85 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK 894 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 894 (997)
..|..++..+...|++++|..+++++.+.. +.+...+..++..+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~ 47 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PRSAEAWYNLGNAYYK 47 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC----------------------------------CcchhHHHHHHHHHHH
Confidence 356778889999999999999999887642 2345567889999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA 973 (997)
.|++++|...++++....|. +...+..++..+...|++++|.+.++++.+ ..| +..++..++.+|...|++++|
T Consensus 48 ~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 48 QGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp HTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred hcCHHHHHHHHHHHHHHCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHH
Confidence 99999999999999987664 677888999999999999999999999998 456 478899999999999999999
Q ss_pred HHHHHHhhccC
Q 001911 974 LQLSYSICHTD 984 (997)
Q Consensus 974 ~~~~~~~~~~~ 984 (997)
...++++...+
T Consensus 123 ~~~~~~~~~~~ 133 (136)
T 2fo7_A 123 IEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHccC
Confidence 99999887643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-07 Score=95.95 Aligned_cols=232 Identities=11% Similarity=0.004 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CCHH
Q 001911 691 DEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK--RLDLALKVISKMLEDSYAPNVVIYTEMIDGL----IKV---GKTE 761 (997)
Q Consensus 691 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 761 (997)
++|+..+++++..++. +..+|+.--..+...+ ++++++++++.++... +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3444555554444322 3333444444444444 5555555555555432 22333444433333 333 5566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC------HHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVD--KCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL------LDE 832 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~------~~~ 832 (997)
+++++++++.+...+ |..+|+.-...+.+.|.++ ++++.++++++. .| |...|+.-..++...|. +++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 666667666665433 5666666555566666666 777777777765 33 56666666666655555 666
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHhcC
Q 001911 833 AHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEV-ALELHEEMTSF 911 (997)
Q Consensus 833 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 911 (997)
++++++++.... +.+..+|+.+..++.+.|+..+ +.++.+++.+.
T Consensus 205 El~~~~~aI~~~----------------------------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 205 ELNYVKDKIVKC----------------------------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHHHHHHHHHC----------------------------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHHHHHHHHHhC----------------------------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 666666655432 2344566666777766666333 44566655543
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 001911 912 SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIK 962 (997)
Q Consensus 912 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 962 (997)
......++.++..++.++.+.|+.++|+++++.+.+. +.| +...|...+.
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHHHHh
Confidence 3111235667777777777777777777777777652 355 3555555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-07 Score=93.58 Aligned_cols=177 Identities=15% Similarity=0.045 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG----LLDEAHNLL 837 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 837 (997)
+|.+.|++..+.| ++..+..|...|...+++++|+++|++..+.| +...+..|...|.. | ++++|..++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666653 56666667667777777777777777777654 45566666666666 5 677777777
Q ss_pred HHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCC
Q 001911 838 EEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK----AGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 838 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 913 (997)
++..+. .+..++..|+.+|.. .+++++|++.|+++.+..+
T Consensus 77 ~~A~~~------------------------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 77 EKAVEA------------------------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHT------------------------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHC------------------------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 776542 234455666666666 7777777777777776663
Q ss_pred CCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHhhcc
Q 001911 914 NSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRV-N-----KWEEALQLSYSICHT 983 (997)
Q Consensus 914 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~-g-----~~~eA~~~~~~~~~~ 983 (997)
. ..+..++..|+..|.. .+++++|+..|+++.+. .++..++..|+.+|... | ++++|+.++++..+.
T Consensus 121 ~-~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 121 S-DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp S-HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred C-cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 1 0025666667777766 56677777777777763 23445666777776643 2 677777777766655
Q ss_pred C
Q 001911 984 D 984 (997)
Q Consensus 984 ~ 984 (997)
|
T Consensus 198 g 198 (212)
T 3rjv_A 198 G 198 (212)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-08 Score=98.62 Aligned_cols=208 Identities=10% Similarity=0.007 Sum_probs=118.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHH
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYA-P-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY-PNV-VTYTAM 785 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~~l 785 (997)
..+..+...+...|++++|+..|+++++.... + ....+..+..+|.+.|++++|...|+++.+.... +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34444555566666666666666666653211 1 1234555566666666666666666666654222 111 122223
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHH
Q 001911 786 IDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIV 865 (997)
Q Consensus 786 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (997)
..++...|.. .+ ..|..+...+...|++++|...++++.+.+ |...........
T Consensus 85 g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~-------- 138 (225)
T 2yhc_A 85 GLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKR-------- 138 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHH--------
T ss_pred HHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHH--------
Confidence 3333222210 00 112223334445789999999999998765 333322221100
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 866 SLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 866 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
+..+.. ........++..|.+.|++++|+..|+++.+..|+......++..++.++.+.|++++|.+.++.+
T Consensus 139 ----l~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 139 ----LVFLKD----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp ----HHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHHHH----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 000000 000123457889999999999999999999988764444578999999999999999999999999
Q ss_pred HHcCCCCC
Q 001911 946 IRKDGSPE 953 (997)
Q Consensus 946 ~~~~~~p~ 953 (997)
... .|+
T Consensus 211 ~~~--~~~ 216 (225)
T 2yhc_A 211 AAN--SSN 216 (225)
T ss_dssp HHC--CSC
T ss_pred Hhh--CCC
Confidence 884 454
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-08 Score=106.48 Aligned_cols=164 Identities=10% Similarity=-0.038 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV 855 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 855 (997)
.+...+..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|...++++...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~------------ 180 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ------------ 180 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG------------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh------------
Confidence 34556677778888899999999999998886 46 5778888899999999999999999876553
Q ss_pred HHhHhHhHHHHHHHHHHhccCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 856 IEGFSREFIVSLGLVNEMGKTDSVPIVPAY-RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 856 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
.|+.... ......+...++.++|++.++++....|+ +...+..++..+...|+
T Consensus 181 -----------------------~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~---~~~~~~~la~~l~~~g~ 234 (287)
T 3qou_A 181 -----------------------DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE---DAALATQLALQLHQVGR 234 (287)
T ss_dssp -----------------------GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTC
T ss_pred -----------------------hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc---cHHHHHHHHHHHHHccc
Confidence 2443322 23334467778888899999999888775 88889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 935 IDKAFELYVDMIRKDGSPE---LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 935 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+++|+..|+++++ ..|+ ..++..|+.+|...|+.++|...+++.+.
T Consensus 235 ~~~A~~~l~~~l~--~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 235 NEEALELLFGHLR--XDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHH--HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999998 4564 56888999999999999999988887643
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.8e-09 Score=100.54 Aligned_cols=159 Identities=9% Similarity=0.019 Sum_probs=117.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHh
Q 001911 782 YTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFS 860 (997)
Q Consensus 782 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 860 (997)
+..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|...+++.....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------- 70 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---------------- 70 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----------------
Confidence 445566777888888888888887764 45 57788888888888888888888887765432
Q ss_pred HhHHHHHHHHHHhccCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 001911 861 REFIVSLGLVNEMGKTDSVPIVPAYRILIDH-YIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAF 939 (997)
Q Consensus 861 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 939 (997)
|+...+..++.. +...+...+|++.++++.+..|+ +...+..++.++...|++++|+
T Consensus 71 -------------------p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~ 128 (176)
T 2r5s_A 71 -------------------QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPD---NFELACELAVQYNQVGRDEEAL 128 (176)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcccHHHHH
Confidence 322222222212 12223334578888888888775 7888889999999999999999
Q ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 940 ELYVDMIRKDGSPE---LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 940 ~~~~~~~~~~~~p~---~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..|+++++ ..|+ ..++..++.+|...|+.++|...+++.+.
T Consensus 129 ~~~~~~l~--~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 129 ELLWNILK--VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHT--TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHH--hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999988 4564 45888999999999999999999887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.3e-08 Score=89.17 Aligned_cols=129 Identities=18% Similarity=0.190 Sum_probs=80.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHh
Q 001911 781 TYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFS 860 (997)
Q Consensus 781 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 860 (997)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++....
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 34555566666666666666666666542 2245566666666666677777777666655432
Q ss_pred HhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 001911 861 REFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 861 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
+.+...+..++..+...|++++|++.++++....|. +...+..++.++...|++++|..
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHccHHHHHH
Confidence 122335556666777777777777777776665543 45566667777777777777777
Q ss_pred HHHHHHH
Q 001911 941 LYVDMIR 947 (997)
Q Consensus 941 ~~~~~~~ 947 (997)
.++++++
T Consensus 125 ~~~~~~~ 131 (136)
T 2fo7_A 125 YYQKALE 131 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7777666
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-07 Score=96.59 Aligned_cols=243 Identities=10% Similarity=0.003 Sum_probs=168.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 683 GFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEE 762 (997)
Q Consensus 683 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 762 (997)
-..-.|++..++.-. .+...........-+.++|...|+++.. ..-.|....+..+...+ . ++
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~-~~--- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-D-TK--- 84 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-T-TT---
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-c-cc---
Confidence 344568888888733 3322232333444556778878876632 11234443444444433 3 22
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 763 AYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 763 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..|-.+ +...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788888887664 4567777788889999999999999999998765323 57788899999999999999999999997
Q ss_pred hcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHhcCC
Q 001911 842 QTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-----IVPAYRILIDH--YIKAG--RLEVALELHEEMTSFS 912 (997)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~ 912 (997)
+.. | +..+...|+.+ ....| ++++|..+|+++.+..
T Consensus 164 ~~~-----------------------------------~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 164 NAI-----------------------------------EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHS-----------------------------------CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred hcC-----------------------------------ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 642 4 23344445433 44444 9999999999998876
Q ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 913 SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK-----DG---SPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 913 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
| +......+..++.+.|++++|.+.++.+.+. .. .|+ +.++..++.++...|+ +|.++++++.+.
T Consensus 209 p----~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 P----TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp C----SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred C----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 4 2122222333788999999999999977662 11 365 7778788888888897 899999988765
Q ss_pred C
Q 001911 984 D 984 (997)
Q Consensus 984 ~ 984 (997)
.
T Consensus 283 ~ 283 (310)
T 3mv2_B 283 D 283 (310)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-08 Score=118.92 Aligned_cols=186 Identities=11% Similarity=-0.047 Sum_probs=143.0
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 685 CKVGKLDEAQMVFSKML--------EHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 685 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
...|++++|++.++++. +..+ .+...+..+...+...|++++|+..|+++++.. +.+...|..+...|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999988 4433 356678888888999999999999999988754 4467788888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 001911 757 VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHN 835 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 835 (997)
.|++++|.+.|+++.+.... +...|..+..++.+.|++++ ++.|++.++. .| +...|..+..++.+.|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998886433 66788888889999999999 9999998885 45 57888899999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCH-----HHHHHHHHHHh
Q 001911 836 LLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRL-----EVALELHEEMT 909 (997)
Q Consensus 836 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~ 909 (997)
.+++..+. .|+ ..++..++.++...++. ++..+..+...
T Consensus 556 ~~~~al~l-----------------------------------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 556 TLDEVPPT-----------------------------------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHTSCTT-----------------------------------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred HHHhhccc-----------------------------------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 99887653 355 34677788888776663 44444444444
Q ss_pred cC
Q 001911 910 SF 911 (997)
Q Consensus 910 ~~ 911 (997)
..
T Consensus 601 ~~ 602 (681)
T 2pzi_A 601 AL 602 (681)
T ss_dssp TS
T ss_pred hC
Confidence 44
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-09 Score=99.69 Aligned_cols=127 Identities=10% Similarity=0.006 Sum_probs=103.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRL 898 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 898 (997)
|...+...|++++|+..+++.... .|+ ...+..++.+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~-----------------------------------~p~~~~~~~~la~~y~~~~~~ 47 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS-----------------------------------PRQKSIKGFYFAKLYYEAKEY 47 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS-----------------------------------HHHHHTTHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc-----------------------------------CcccHHHHHHHHHHHHHcCCH
Confidence 344555667778887777765432 233 23567799999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH-
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQL- 976 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~- 976 (997)
++|++.|+++++..|+ +..+|..++.++...|++++|+..|+++++ +.|+ +.++..++.+|.+.|++++|.+.
T Consensus 48 ~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~ 122 (150)
T 4ga2_A 48 DLAKKYICTYINVQER---DPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYW 122 (150)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999999999999876 899999999999999999999999999999 7796 88999999999999999887765
Q ss_pred HHHhhccCCc
Q 001911 977 SYSICHTDIN 986 (997)
Q Consensus 977 ~~~~~~~~~~ 986 (997)
+++.......
T Consensus 123 ~~~al~l~P~ 132 (150)
T 4ga2_A 123 VERAAKLFPG 132 (150)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHhCcC
Confidence 5877765443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-08 Score=116.62 Aligned_cols=163 Identities=12% Similarity=-0.005 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 001911 757 VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHN 835 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 835 (997)
.|++++|.+.++++.+... -+...+..+...+...|++++|++.+++..+. .| +...+..+..+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788899999998887532 26788888888999999999999999999886 45 57888899999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 001911 836 LLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS 915 (997)
Q Consensus 836 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 915 (997)
.+++..+.. +.+...+..++.+|...|++++|++.++++.+..|.
T Consensus 79 ~~~~al~~~----------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 123 (568)
T 2vsy_A 79 LLQQASDAA----------------------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE- 123 (568)
T ss_dssp HHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHhcC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 998877642 223557888999999999999999999999888765
Q ss_pred CcchhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 916 AASRNSTLLLIESLSLA---RKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
+...+..++.++... |++++|.+.++++++ ..|+ ...+..++
T Consensus 124 --~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 124 --EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA--QGVGAVEPFAFLS 169 (568)
T ss_dssp --CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH--HTCCCSCHHHHTT
T ss_pred --CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh--cCCcccChHHHhC
Confidence 778888899999888 999999999999988 4464 44555555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-08 Score=91.23 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=94.7
Q ss_pred CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 001911 879 VPIV-PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LST 956 (997)
Q Consensus 879 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 956 (997)
.|+. ..+..++..|.+.|++++|++.|+++++..|. +..+|..++.++...|++++|+..++++++ +.|+ ..+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a 83 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKG 83 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHH
Confidence 4553 37888999999999999999999999998876 889999999999999999999999999999 6786 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
|..++.+|...|++++|++.+++.++...+..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999999988765543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=95.08 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=93.4
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 001911 879 VPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LST 956 (997)
Q Consensus 879 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 956 (997)
.|+ ...+..++..+.+.|++++|++.|+++...+|. +...|..++.+|...|++++|+..|+++++ +.|+ +.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~ 106 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTP 106 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHH
Confidence 454 347888999999999999999999999999886 899999999999999999999999999999 7786 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
|..++.+|...|++++|+..+++.+....
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-08 Score=88.31 Aligned_cols=115 Identities=15% Similarity=0.029 Sum_probs=95.7
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 810 CAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 810 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
+.|+ ...+......|.+.|++++|+..|++..+.. +.+...|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~~ 53 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----------------------------------PENAILYSNR 53 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHH
Confidence 4564 5677888889999999999999998877643 2345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+.+|.+.|++++|++.++++++.+|. +..+|..++.++...|++++|++.|+++++ +.|+ ..++..|+.+
T Consensus 54 ~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 54 AACLTKLMEFQRALDDCDTCIRLDSK---FIKGYIRKAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hhHHHhhccHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHh
Confidence 99999999999999999999988775 788899999999999999999999999999 6785 7777777765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.8e-08 Score=100.90 Aligned_cols=169 Identities=12% Similarity=-0.002 Sum_probs=133.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 001911 741 APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYR-V 819 (997)
Q Consensus 741 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-~ 819 (997)
+.+...+..+...+.+.|++++|...|+++.+.... +...+..+...+...|++++|+..++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 345566777888888999999999999998886433 6778888999999999999999999988775 46544333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
....+...++.++|...+++..... +.+...+..++..|...|+++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~----------------------------------P~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN----------------------------------PEDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC----------------------------------CccHHHHHHHHHHHHHcccHH
Confidence 3334667788888888888876643 234567888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+|++.++++....|+ ..+...+..++..+...|+.++|...|++.+.
T Consensus 237 ~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 237 EALELLFGHLRXDLT-AADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTT-GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999988765 12377888999999999999999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-07 Score=96.01 Aligned_cols=173 Identities=8% Similarity=-0.039 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRK 854 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 854 (997)
..+...+..+...|++++|++.+++..+...... ...+..+...+...|++++|...+++........
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------- 148 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------- 148 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-------
Confidence 3455567778899999999999998887532211 1234456677788899999999999887532110
Q ss_pred HHHhHhHhHHHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCC-cchhhHHHHHHH
Q 001911 855 VIEGFSREFIVSLGLVNEMGKTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTS---FSSNSA-ASRNSTLLLIES 928 (997)
Q Consensus 855 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~-~~~~~~~~l~~~ 928 (997)
..+. ..+++.++..|...|++++|++.++++.+ ..+... ....++..++.+
T Consensus 149 -----------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 149 -----------------------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp -----------------------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----------------------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 0111 33788999999999999999999999883 332211 122688899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHhhc
Q 001911 929 LSLARKIDKAFELYVDMIRKD----GSPE-LSTFVHLIKGLIRVNKWEEA-LQLSYSICH 982 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~y~~~g~~~eA-~~~~~~~~~ 982 (997)
|...|++++|+..++++++.. .... ..++..++.+|.+.|++++| ...+++...
T Consensus 206 y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 999999999999999998632 1111 57899999999999999999 777777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-07 Score=100.83 Aligned_cols=189 Identities=9% Similarity=0.057 Sum_probs=119.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEK----GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAPN--FVTYRVL 820 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~~~~~l 820 (997)
..|...|++++|...|.+..+. +-.+ -..+|+.+...|...|++++|+..|++.++. | .|. ..++..+
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~l 122 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRA 122 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 3455566666666666665542 1000 1335666777777778888888887776542 1 121 4567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 899 (997)
..+|.. |++++|+..+++..+.. .. .+..+ ...++..++.+|...|+++
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~--------------------------~~---~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVF--------------------------EN---EERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHH--------------------------HH---TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHH--------------------------Hh---CCChhHHHHHHHHHHHHHHHcCCHH
Confidence 888878 99999998888875421 00 00000 1235778889999999999
Q ss_pred HHHHHHHHHhcCCCCCCc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCH
Q 001911 900 VALELHEEMTSFSSNSAA---SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE------LSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~y~~~g~~ 970 (997)
+|++.|+++....+.... ....+..++.++...|++++|...|++++ . .|+ ......++.+| ..|+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDE 248 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCH
Confidence 999999998875432111 12356667777777899999999999987 3 343 22455666655 56776
Q ss_pred HHHHH
Q 001911 971 EEALQ 975 (997)
Q Consensus 971 ~eA~~ 975 (997)
+.+.+
T Consensus 249 ~~~~~ 253 (307)
T 2ifu_A 249 EQLLR 253 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.5e-08 Score=103.33 Aligned_cols=212 Identities=11% Similarity=0.001 Sum_probs=155.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 001911 721 KDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK-VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCL 799 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 799 (997)
..|++++|.+++++..+.. +.. +.+ .+++++|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567888888888776531 111 112 47888888887765 44677899999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhc
Q 001911 800 ELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMG 874 (997)
Q Consensus 800 ~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 874 (997)
+.|.+..+. |-.+ -..+|..+..+|...|++++|...+++..+.. .+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------------------------~~-- 108 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY--------------------------VE-- 108 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------------------------HT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--------------------------HH--
Confidence 999987763 2111 14578889999999999999999999876421 00
Q ss_pred cCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 875 KTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA---ASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 875 ~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
.+ .+. ..++..++.+|.. |++++|++.|+++....+... ....++..++.++...|++++|+..|+++++..
T Consensus 109 -~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 109 -NG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp -TT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -cC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 01 111 2467789999988 999999999999987543211 124678889999999999999999999998721
Q ss_pred ----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchh
Q 001911 950 ----GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 950 ----~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~ 990 (997)
..+. ..++..++.+|...|++++|+..+++.+ ....+...
T Consensus 186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 1111 2377888999999999999999999998 76666543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8e-08 Score=112.16 Aligned_cols=163 Identities=12% Similarity=-0.021 Sum_probs=117.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLEL 801 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 801 (997)
.|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+.+++..+... .+...+..+...|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999888753 34577888899999999999999999999988643 3678888899999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 802 LRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 802 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
+++..+. .| +...+..+..+|...|++++|...+++..+.. +.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~ 123 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----------------------------------PE 123 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TT
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CC
Confidence 9998886 45 57888899999999999999999998877643 22
Q ss_pred ChhhHHHHHHHHHhc---CCHHHHHHHHHHHhcCCCCCCcchhhHHHH
Q 001911 881 IVPAYRILIDHYIKA---GRLEVALELHEEMTSFSSNSAASRNSTLLL 925 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 925 (997)
+...+..++.++... |++++|.+.++++.+..|. +...+..+
T Consensus 124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 168 (568)
T 2vsy_A 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG---AVEPFAFL 168 (568)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC---CSCHHHHT
T ss_pred CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc---ccChHHHh
Confidence 355788899999999 9999999999999888765 33444444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=87.48 Aligned_cols=107 Identities=13% Similarity=-0.016 Sum_probs=93.6
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 810 CAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 810 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
+.| +...+..+...+...|++++|...|++..... +.+...|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----------------------------------P~~~~~~~~l 76 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----------------------------------FYNVDYIMGL 76 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHH
Confidence 456 46788889999999999999999999987653 2345688899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS 955 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 955 (997)
+.+|...|++++|++.|+++.+..|+ +...|..++.+|...|++++|+..|+++++ ..||..
T Consensus 77 g~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 77 AAIYQIKEQFQQAADLYAVAFALGKN---DYTPVFHTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSS---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 99999999999999999999999876 888999999999999999999999999999 568754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.4e-08 Score=92.32 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH-CC 825 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~-~~ 825 (997)
+..+...+.+.|++++|...|+++.+... .+...+..+...+...|++++|+..+++.... .|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 44555667777777888777777665422 25666777777777778888888877777664 3343333222211 11
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
..+...+|...+++..+. .|+ ...+..++.++...|++++|++.
T Consensus 86 ~~~~~~~a~~~~~~al~~-----------------------------------~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA-----------------------------------NPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH-----------------------------------STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh-----------------------------------CCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 222233455666555443 243 55777888888888888888888
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++++.+..|. ..+...+..++.++...|+.++|...|++.+.
T Consensus 131 ~~~~l~~~p~-~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 131 LWNILKVNLG-AQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHTTCTT-TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCcc-cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 8888887654 12355777888888888888888888888765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-06 Score=92.52 Aligned_cols=219 Identities=11% Similarity=0.041 Sum_probs=157.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-CHHHHH
Q 001911 723 KRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG-KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV-G-KVDKCL 799 (997)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~ 799 (997)
+..++|++++++++... +-+..+|+.-...+...| .+++++++++.+.....+ +..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 44456777777777653 345566777777777777 488888888888876544 777777766666665 6 788999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHH
Q 001911 800 ELLRQMSSKGCAP-NFVTYRVLINHCCASGLLD--------EAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLV 870 (997)
Q Consensus 800 ~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 870 (997)
++++++++. .| |..+|+.-..++.+.|.++ +++++++++.+..
T Consensus 146 ~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------------------------- 197 (349)
T 3q7a_A 146 EYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------------------------- 197 (349)
T ss_dssp HHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------------------------
Confidence 999998876 45 7778877777766666666 7888888777653
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH--------
Q 001911 871 NEMGKTDSVPIVPAYRILIDHYIKAGR-------LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI-------- 935 (997)
Q Consensus 871 ~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------- 935 (997)
.-+..+|+....++.+.++ ++++++.+++++...|+ |..+|..+.+.+.+.|+.
T Consensus 198 --------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~---n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 198 --------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH---NVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp --------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred --------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCCcccccccc
Confidence 2345578877777777776 79999999999998886 999999988888877653
Q ss_pred ------------HHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 936 ------------DKAFELYVDMIRKD----G-SPELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 936 ------------~~A~~~~~~~~~~~----~-~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+......++...+ . .+.+.++..|+++|.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 33333333333221 1 23577899999999999999999999998754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-07 Score=92.85 Aligned_cols=129 Identities=7% Similarity=-0.088 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
.+..+...+...|++++|...+++.. .|+...+..++.+|...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-------------------------------------~~~~~~~~~lg~~~~~~ 50 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-------------------------------------DPHSRICFNIGCMYTIL 50 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-------------------------------------SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-------------------------------------CCChHHHHHHHHHHHHc
Confidence 35556677778888888888886642 24556777888888888
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------------HHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-----------------LSTFV 958 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----------------~~~~~ 958 (997)
|++++|++.++++....|. +..++..++.++...|++++|++.++++++ ..|+ ..++.
T Consensus 51 g~~~~A~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (213)
T 1hh8_A 51 KNMTEAEKAFTRSINRDKH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALI--QLRGNQLIDYKILGLQFKLFACEVLY 125 (213)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCSEEECGGGTBCCEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCccHHHHHHhccccCccchHHHH
Confidence 8888888888888877665 677888888888888888888888888888 3342 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 959 HLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.++.+|...|++++|...+++.......
T Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 126 NIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888888888888888776553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-07 Score=90.88 Aligned_cols=132 Identities=10% Similarity=-0.082 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhH
Q 001911 782 YTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSR 861 (997)
Q Consensus 782 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 861 (997)
+..+...+...|++++|++.|++.. .|+...+..+..++...|++++|...+++.....
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence 3445556666777777777766553 4566667777777777777777777776665432
Q ss_pred hHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-------------cchhhHHHHHHH
Q 001911 862 EFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-------------ASRNSTLLLIES 928 (997)
Q Consensus 862 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~ 928 (997)
+.+...+..++.+|...|++++|++.++++.+..|... ....++..++.+
T Consensus 68 -----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 68 -----------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 12334566677777777777777777777766544311 123667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 929 LSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+...|++++|...++++++ ..|+
T Consensus 131 ~~~~g~~~~A~~~~~~al~--~~p~ 153 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATS--MKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCCS
T ss_pred HHHccCHHHHHHHHHHHHH--cCcc
Confidence 7777777777777777777 4564
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-05 Score=87.87 Aligned_cols=124 Identities=10% Similarity=0.103 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001911 711 TYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV-GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF 789 (997)
Q Consensus 711 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 789 (997)
.|...+....+.+..+.|..+|++. +.. ..+...|......-... ++.+.|.++|+...+.. +-++..+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 4444555555556666666666666 211 12222332222211122 24667777777666542 21344455555555
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
.+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++..
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677777777777652 1355566666655666777777776666653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.1e-06 Score=87.59 Aligned_cols=182 Identities=12% Similarity=0.012 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-HHHHHH
Q 001911 760 TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG--KVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL-LDEAHN 835 (997)
Q Consensus 760 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~-~~~A~~ 835 (997)
+++++.+++.+.....+ +..+|+.-...+.+.| .++++++++.++.+. .| |...|+.-..++...|. +++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 56777777777775444 6677776666666666 377888888888875 34 67777777777777777 578888
Q ss_pred HHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc--------------CCHHHH
Q 001911 836 LLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA--------------GRLEVA 901 (997)
Q Consensus 836 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A 901 (997)
+++++.+.. +-+..+|+....++... +.++++
T Consensus 167 ~~~~~I~~~----------------------------------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eE 212 (331)
T 3dss_A 167 FTDSLITRN----------------------------------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 212 (331)
T ss_dssp HHHHHHHHC----------------------------------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHH
T ss_pred HHHHHHHHC----------------------------------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHH
Confidence 887777654 12233444444443333 457889
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HH
Q 001911 902 LELHEEMTSFSSNSAASRNSTLLLIESLSLA-----------RKIDKAFELYVDMIRKDGSPELSTFVHLIKG-----LI 965 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-----y~ 965 (997)
++.++++....|+ |..+|+.+.+.+... +.++++++.++++++ ..||. .|..+..+ .-
T Consensus 213 le~~~~ai~~~P~---d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~ 286 (331)
T 3dss_A 213 LELVQNAFFTDPN---DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALD 286 (331)
T ss_dssp HHHHHHHHHHSTT---CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCC---CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhc
Confidence 9999998888876 888888777777665 458899999999998 67874 23332222 22
Q ss_pred hcCCHHHHHHHHHHhhccC
Q 001911 966 RVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~~~ 984 (997)
..|..+++...++++...+
T Consensus 287 ~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 287 PLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp TTTTHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHhC
Confidence 4677888888888877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=92.39 Aligned_cols=171 Identities=10% Similarity=0.008 Sum_probs=124.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHh
Q 001911 784 AMIDGFGKVGKVDKCLELLRQMSSKG-CAPNF----VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEG 858 (997)
Q Consensus 784 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 858 (997)
..+..+...|++++|.+++++..+.. ..|+. ..+..+...+...|++++|...+++.........
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~---------- 149 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---------- 149 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS----------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc----------
Confidence 34667788999999999999988742 12221 1333467777788899999999999876321110
Q ss_pred HhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCCcchhhHHHHHHHHHhcCC
Q 001911 859 FSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSF----SSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 859 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
...-...+++.++..|...|++++|++.++++.+. +........++..++.+|...|+
T Consensus 150 ------------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 150 ------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 00000225888999999999999999999998842 11112234578899999999999
Q ss_pred HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHhhc
Q 001911 935 IDKAFELYVDMIRK----DGSPE-LSTFVHLIKGLIRVNK-WEEALQLSYSICH 982 (997)
Q Consensus 935 ~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~y~~~g~-~~eA~~~~~~~~~ 982 (997)
+++|+..++++++. +..+. ..++..++.+|.+.|+ +++|++.+++...
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999998862 12222 5789999999999995 6999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-05 Score=87.08 Aligned_cols=124 Identities=10% Similarity=-0.030 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhhHHHHHHh
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG-LLDEAHNLLEEMKQTYWPTHVAGYRKVIEG 858 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 858 (997)
..|...+..+.+.+..+.|..+|++. ... ..+...|...+..-...| +.+.|..+|+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-------------- 350 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-------------- 350 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--------------
Confidence 34555566666667777788888777 321 123444443332222223 5777777777766542
Q ss_pred HhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHH
Q 001911 859 FSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDK 937 (997)
Q Consensus 859 ~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 937 (997)
|+ ...+...++.....|+.+.|..+|+++.+ ....|...+.--...|+.+.
T Consensus 351 ---------------------~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~ 402 (493)
T 2uy1_A 351 ---------------------PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMEL 402 (493)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHH
Confidence 22 22344455666677888888888888732 45566666655566688888
Q ss_pred HHHHHHHHHH
Q 001911 938 AFELYVDMIR 947 (997)
Q Consensus 938 A~~~~~~~~~ 947 (997)
+.++++++.+
T Consensus 403 ~r~v~~~~~~ 412 (493)
T 2uy1_A 403 FRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.8e-07 Score=90.61 Aligned_cols=101 Identities=8% Similarity=-0.101 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE--LSTFVHLI 961 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 961 (997)
..+.++..+.+.|+|++|+..++.....+.+ .....++..++.++...|++++|+..|+++......|. ..+++.++
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~g 215 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK-FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLA 215 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc-ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 3444555555555555555555544332100 00123455555555555555555555555554222142 33555555
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCC
Q 001911 962 KGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
.++.+.|+.++|...++++.....
T Consensus 216 laL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 216 MARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 555555555555555555554433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.4e-07 Score=86.05 Aligned_cols=130 Identities=10% Similarity=0.022 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..... +.+...+..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~~a~~~~ 58 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN----------------------------------PSNAIYYGNRSLAYL 58 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------------CCChHHHHHHHHHHH
Confidence 4567788888999999999999999887642 234567888999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH--HHHHHHHhcCCH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV--HLIKGLIRVNKW 970 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~--~l~~~y~~~g~~ 970 (997)
..|++++|++.++++.+..|. +...+..++.++...|++++|...++++++ ..|+ ..++. .++..+...|++
T Consensus 59 ~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 59 RTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765 788999999999999999999999999999 5574 55664 455558899999
Q ss_pred HHHHHHHHHhhc
Q 001911 971 EEALQLSYSICH 982 (997)
Q Consensus 971 ~eA~~~~~~~~~ 982 (997)
++|+..+++...
T Consensus 134 ~~A~~~~~~~~~ 145 (166)
T 1a17_A 134 ERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHcccchHH
Confidence 999999987644
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.1e-08 Score=89.95 Aligned_cols=98 Identities=13% Similarity=-0.014 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|+..|+++....|. +...|..++.++...|++++|+..|+++++ +.|+ +.++..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~l 95 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHH
Confidence 446788999999999999999999999998876 889999999999999999999999999999 6685 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+.+|...|++++|+..+++.+...
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=83.57 Aligned_cols=99 Identities=11% Similarity=-0.085 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.+..++..+.+.|++++|+..++++.+..|. +...|..++.++...|++++|+..++++++ +.|+ ..++..|+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4677889999999999999999999998876 889999999999999999999999999999 6785 889999999
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 963 GLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
+|...|++++|+..+++++.....+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999999988765443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.6e-07 Score=98.14 Aligned_cols=164 Identities=10% Similarity=-0.030 Sum_probs=123.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLV 870 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 870 (997)
.+++++|++.++...+. .| +...+..+...|.+.|++++|...|++............. ..+..
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-----------~~~~~-- 190 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-----------EEAQK-- 190 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-----------HHHHH--
T ss_pred EeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-----------HHHHH--
Confidence 34455565555544432 34 4667888889999999999999999988764311100000 00000
Q ss_pred HHhccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 871 NEMGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 871 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
. .| ....|..++.+|.+.|++++|++.++++++..|. +..++..++.+|...|++++|+..|+++++
T Consensus 191 --~-----~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-- 258 (336)
T 1p5q_A 191 --A-----QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQ-- 258 (336)
T ss_dssp --H-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred --H-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 0 01 1357888999999999999999999999998876 889999999999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHhhc
Q 001911 950 GSPE-LSTFVHLIKGLIRVNKWEEA-LQLSYSICH 982 (997)
Q Consensus 950 ~~p~-~~~~~~l~~~y~~~g~~~eA-~~~~~~~~~ 982 (997)
+.|+ ..++..++.+|...|++++| ...+++|..
T Consensus 259 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6785 88999999999999999999 556666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.9e-07 Score=80.46 Aligned_cols=119 Identities=12% Similarity=0.002 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~ 56 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----------------------------------PANAVYFCNRAAAY 56 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----------------------------------CCCHHHHHHHHHHH
Confidence 45678888889999999999999998876542 22455778899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~ 970 (997)
...|++++|++.++++....|. +...+..++.++...|++++|...++++++ ..| +..++..++.++.+.|++
T Consensus 57 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 57 SKLGNYAGAVQDCERAICIDPA---YSKAYGRMGLALSSLNKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhhchHHHHHHHHHHHhcCcc---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999987765 678899999999999999999999999998 557 478899999999988875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-05 Score=83.49 Aligned_cols=233 Identities=9% Similarity=-0.004 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHH
Q 001911 690 LDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK-RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV-G-KTEEAYKV 766 (997)
Q Consensus 690 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~ 766 (997)
.++|++++++++..++. +..+|+.--..+...| .+++++++++.++... +.+..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34556666666655433 4444554444444555 3666666666666543 34555566555555554 5 56666777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-------H
Q 001911 767 MLMMEEKGCYPNVVTYTAMIDGFGKVGKVD--------KCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL-------L 830 (997)
Q Consensus 767 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~-------~ 830 (997)
++++.+...+ |...|+.-...+.+.|.++ ++++.++++.+. .| |...|+....++.+.++ +
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHH
Confidence 7666665333 5555555444444444444 888888888876 34 67788887777777765 6
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH------------
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL------------ 898 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~------------ 898 (997)
++++++++++.... +.+..+|+.+...+.+.|+.
T Consensus 225 ~eELe~~~~aI~~~----------------------------------P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 225 QDELIYILKSIHLI----------------------------------PHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 77777777776543 22334555555555554442
Q ss_pred --------HHHHHHHHHHhcCC---CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 001911 899 --------EVALELHEEMTSFS---SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIK 962 (997)
Q Consensus 899 --------~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 962 (997)
.+..++...+.... ......+.++..|+.+|...|+.++|.++++.+.+. ..| ....|...+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRRR 345 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHHH
Confidence 22333333332221 011357788888888888888888999998888653 455 3555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-07 Score=82.38 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
..+..++..+...|++++|++.|+++.+..|. +...|..++.++...|++++|+..++++++ ..|+ ..++..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 45778999999999999999999999998876 889999999999999999999999999999 6785 88999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccC
Q 001911 962 KGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.+|...|++++|+..+++.....
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999988765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.8e-07 Score=81.37 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~la~~~ 60 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----------------------------------PKDAKLYSNRAACY 60 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----------------------------------TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------------CCcHHHHHHHHHHH
Confidence 45667777777777777777777777765532 12344666777777
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
...|++++|++.++++.+..|. +...+..++.++...|++++|...++++++ ..|+ ..++..++.+|...|+
T Consensus 61 ~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 61 TKLLEFQLALKDCEECIQLEPT---FIKGYTRKAAALEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhcC
Confidence 7777777777777777776554 666777777777777788888887777777 4564 5667777777776653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-07 Score=83.95 Aligned_cols=97 Identities=10% Similarity=-0.053 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------H
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE--------L 954 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~ 954 (997)
.++..|+..+.+.|++++|++.|+++++..|. +..+|..++.+|...|++++|++.++++++ +.|+ .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHH
Confidence 36778999999999999999999999998876 889999999999999999999999999998 3342 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.++..++.+|...|++++|++.+++.+...
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 478899999999999999999999887643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-06 Score=77.94 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|..+++++.... +.+...+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~la~~~~ 54 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PNNAEAWYNLGNAYY 54 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------------cCcHHHHHHHHHHHH
Confidence 5677788888888899999998888876532 223456778888889
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN 968 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g 968 (997)
..|++++|+..++++....|. +...+..++.++...|++++|...++++.+ ..|+ ..++..++.++...|
T Consensus 55 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 55 KQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhcc
Confidence 999999999999998877654 677888888889999999999999999888 4574 777888888877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=88.09 Aligned_cols=204 Identities=10% Similarity=-0.009 Sum_probs=139.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHH------------CCCC-----
Q 001911 721 KDKRLDLALKVISKMLEDSYAPNVVIYTEM-------IDGLIKVGKTEEAYKVMLMMEE------------KGCY----- 776 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~g~~----- 776 (997)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+....+ .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677778888888777653 3345666666 4555555555555555555443 1110
Q ss_pred ---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 777 ---PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 777 ---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
--...+..+...+...|++++|.++|..+... .|+......+...+.+.|++++|+..|+..... +
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~------- 165 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P------- 165 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-------
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-------
Confidence 00223445667788899999999999888875 475446777777888999999999999754321 0
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL 931 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 931 (997)
.|. ...+..++.++...|++++|++.|+++...+.+.......+..++.++.+
T Consensus 166 -------------------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 166 -------------------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred -------------------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 111 23577799999999999999999999875321011145677888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 932 ARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 932 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
.|+.++|...|+++.+ ..|+..++..|.+-
T Consensus 221 lGr~deA~~~l~~a~a--~~P~~~~~~aL~~~ 250 (282)
T 4f3v_A 221 QGNESAAVALLEWLQT--THPEPKVAAALKDP 250 (282)
T ss_dssp HTCHHHHHHHHHHHHH--HSCCHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHh--cCCcHHHHHHHhCC
Confidence 9999999999999999 56875555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-07 Score=84.50 Aligned_cols=98 Identities=12% Similarity=-0.003 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|++.|+++....|. +...|..++.++...|++++|+..|+++++ ..|+ +.++..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 346778899999999999999999999998876 889999999999999999999999999999 6685 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+.+|...|++++|+..+++.+...
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.7e-06 Score=86.45 Aligned_cols=171 Identities=14% Similarity=0.061 Sum_probs=126.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKGC-YPNV----VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA-PN----FVTYR 818 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~ 818 (997)
..+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999999887422 2221 13345666777888999999999999884222 22 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCC
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGR 897 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 897 (997)
.+..+|...|++++|..+++++.+.. .... +..+. ..++..++..|.+.|+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~--------------------------~~~~--~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQL--------------------------EALH--DNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHSS--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------Hhcc--cchhHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999886421 1100 01122 2368889999999999
Q ss_pred HHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 001911 898 LEVALELHEEMTSFSSN---SAASRNSTLLLIESLSLARK-IDKAFELYVDMIR 947 (997)
Q Consensus 898 ~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 947 (997)
+++|++.++++.+..+. ...-..++..++.++...|+ +++|.+.++++++
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999998864321 11236788999999999994 7999999999876
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-07 Score=88.55 Aligned_cols=101 Identities=8% Similarity=0.071 Sum_probs=90.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH-HHhcCCH--HHHHHHHHHHHHcCCCCC-HHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES-LSLARKI--DKAFELYVDMIRKDGSPE-LST 956 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~p~-~~~ 956 (997)
+...|..++.+|...|++++|++.++++.+..|. +...+..++.+ +...|++ ++|+..++++++ ..|+ ..+
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 117 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQASQHMTAQTRAMIDKALA--LDSNEITA 117 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH--HCTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--hCCCcHHH
Confidence 4567889999999999999999999999988775 78889999999 7789998 999999999999 5675 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+..++.+|...|++++|...++++......
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999998876554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.7e-07 Score=83.90 Aligned_cols=112 Identities=10% Similarity=-0.020 Sum_probs=87.8
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 801 LLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 801 l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
.|+++... .| +...+..+...+...|++++|...|++..... +
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------p 52 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----------------------------------H 52 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------T
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----------------------------------c
Confidence 44555543 45 46677778888889999999999998876543 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+...|..++.+|...|++++|++.|+++....|. +...+..++.++...|++++|+..|+++++ ..|+
T Consensus 53 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 121 (148)
T 2vgx_A 53 YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EPRFPFHAAECLLQXGELAEAESGLFLAQE--LIAN 121 (148)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTT
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 34557788888999999999999999999888775 778888889999999999999999999888 4454
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.7e-06 Score=87.68 Aligned_cols=172 Identities=13% Similarity=0.051 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCC--H
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV------VTYTAMIDGFGKVGKVDKCLELLRQMSSKG---CAPN--F 814 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~ 814 (997)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++..+.. ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445666778888898988888887765322 22 223445566778899999999999988632 1222 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC--ChhhHHHHHHHH
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP--IVPAYRILIDHY 892 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~ 892 (997)
.+++.+...|...|++++|..++++..+.. ... ...+ ...+++.++..|
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~--------------------------~~~---~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQL--------------------------EAL---HDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHS---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------Hhc---CccccchHHHHHhHHHHH
Confidence 588999999999999999999999876320 000 0011 124788899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSN---SAASRNSTLLLIESLSLARKIDKA-FELYVDMIR 947 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 947 (997)
...|++++|++.++++.+..+. ...-..++..++.+|...|++++| ...+++++.
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 9999999999999998764311 111267888999999999999999 777888775
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-06 Score=85.92 Aligned_cols=98 Identities=13% Similarity=-0.036 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----H
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSF---SSNSA-ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDG-SPE----L 954 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~ 954 (997)
.+..++..|...|++++|++.++++... .+... ....++..++.++...|++++|...++++++... .++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444555555555555555555555433 11000 1223344555555555555555555555543110 011 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
.++..++.+|...|++++|...+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 234555555555555555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-06 Score=91.90 Aligned_cols=97 Identities=16% Similarity=-0.027 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLI 821 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~ 821 (997)
+...+..+...+.+.|++++|...|+++.+.... +...|..+...|.+.|++++|+..+++.++. .| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4566777788888888999999888888876322 7778888888888899999999999888875 45 577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 001911 822 NHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~ 842 (997)
.+|...|++++|...+++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999998888765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.6e-07 Score=85.88 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..|...|++++|++.|+++.+..|. +...|..++.+|...|++++|+..++++++ +.|+ ..+|..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 457888999999999999999999999998876 889999999999999999999999999999 6685 8899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
+.+|...|++++|+..+++.+......
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999988765544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-06 Score=80.32 Aligned_cols=130 Identities=9% Similarity=0.057 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGF 859 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 859 (997)
..+..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++.....
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------------- 77 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------------- 77 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 456666777778888888888888877752 2257778888888888888888888888776532
Q ss_pred hHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHH--HHHhcCCHHH
Q 001911 860 SREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIE--SLSLARKIDK 937 (997)
Q Consensus 860 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 937 (997)
+.+...+..++.+|...|++++|++.++++.+..|. +...+..+.. .+...|++++
T Consensus 78 -------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 78 -------------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 223456777888888888888888888888877664 4555543333 3667788888
Q ss_pred HHHHHHHHHH
Q 001911 938 AFELYVDMIR 947 (997)
Q Consensus 938 A~~~~~~~~~ 947 (997)
|++.+++...
T Consensus 136 A~~~~~~~~~ 145 (166)
T 1a17_A 136 AIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHcccchHH
Confidence 8888877654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-06 Score=76.54 Aligned_cols=113 Identities=10% Similarity=-0.091 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..... +.+...|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~~a~~~~ 49 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----------------------------------PEDARGYSNRAAALA 49 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------------CCChHHHHHHHHHHH
Confidence 4567888899999999999999999987643 234568889999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CC-HHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS------PE-LSTFVHLIKGLI 965 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------p~-~~~~~~l~~~y~ 965 (997)
+.|++++|++.++++.+..|. +...+..++.++...|++++|+..++++++ +. |+ ..++..+..+..
T Consensus 50 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 50 KLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhCHHHHHHHHHHHHH--hCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999998876 788999999999999999999999999998 56 65 556666666543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.2e-05 Score=79.24 Aligned_cols=228 Identities=10% Similarity=-0.012 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--C
Q 001911 692 EAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK----------RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG--K 759 (997)
Q Consensus 692 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~ 759 (997)
+|+..++.++..++. +..+|+.--..+...+ .+++++.+++.++... +.+..+|+.-...+.+.| .
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 566666666655433 3333333222222222 2577888888887654 457778887777777777 4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----------
Q 001911 760 TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK-VDKCLELLRQMSSKGCAP-NFVTYRVLINHCCAS---------- 827 (997)
Q Consensus 760 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~---------- 827 (997)
+++++.+++++.+...+ |...|+.-...+...|. ++++++.+.++++. .| |...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 78888999888887554 77777777777777787 58899999998886 45 677787777766655
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc--------
Q 001911 828 ----GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA-------- 895 (997)
Q Consensus 828 ----g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 895 (997)
+.++++++++++..... +.+..+|+-+-..+.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~----------------------------------P~d~SaW~Y~r~ll~~~~~~~~~~~ 248 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTD----------------------------------PNDQSAWFYHRWLLGAGSGRCELSV 248 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHSSSCGGGCCH
T ss_pred ccchHHHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHhccCccccch
Confidence 45677777777766543 22334555444444443
Q ss_pred ---CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 896 ---GRLEVALELHEEMTSFSSNSAASRNSTLLLIES---LSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 896 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+.++++++.++++.+..|+ +.-.+..++.. ....|..+++...+.++++ +.|. ..-|..+...
T Consensus 249 ~~~~~l~~el~~~~elle~~pd---~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 249 EKSTVLQSELESCKELQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCcc---cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHHH
Confidence 5689999999999998875 43333332221 1235788999999999999 7785 4555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=85.51 Aligned_cols=179 Identities=8% Similarity=-0.059 Sum_probs=111.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhH
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREF 863 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 863 (997)
.+......|++++|.+.+..-... .+ ....+..+...+...|++++|...+++...... .........+....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~--- 83 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKK--- 83 (198)
T ss_dssp ------------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHH---
T ss_pred hhhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHH---
Confidence 334445566666666665533321 12 355677888889999999999999998876421 00000000000000
Q ss_pred HHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 864 IVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 864 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
.. -....+..++.+|...|++++|+..++++.+..|. +..++..++.++...|++++|+..|+
T Consensus 84 -------~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 84 -------KN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp -------HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00 01256788999999999999999999999998775 78899999999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH-HHHHHhhccCCccc
Q 001911 944 DMIRKDGSPE-LSTFVHLIKGLIRVNKWEEAL-QLSYSICHTDINWL 988 (997)
Q Consensus 944 ~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~-~~~~~~~~~~~~~~ 988 (997)
++++ +.|+ ..++..++.++...|+.+++. ..+.++...+.-+.
T Consensus 147 ~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 191 (198)
T 2fbn_A 147 KAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYE 191 (198)
T ss_dssp HHHH--HSTTCHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 9999 6685 789999999999999999988 67777777666553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-06 Score=77.47 Aligned_cols=112 Identities=8% Similarity=0.070 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+.+.|++++|+..|++..+.. +.+...|..++.+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----------------------------------p~~~~~~~nlg~~~~ 53 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD----------------------------------PSNITFYNNKAAVYF 53 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHhHHHHHH
Confidence 4567788999999999999999999987643 223557889999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAAS----RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLI 961 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 961 (997)
..|++++|++.++++++..|..... ..++..++.++...|++++|++.|++.++ ..||+.....|.
T Consensus 54 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~ 123 (127)
T 4gcn_A 54 EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVK 123 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHH
Confidence 9999999999999998875532222 24677889999999999999999999998 568876554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=79.85 Aligned_cols=102 Identities=13% Similarity=-0.011 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc----c-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAA----S-----RNSTLLLIESLSLARKIDKAFELYVDMIRKDG--- 950 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 950 (997)
..+...+..+.+.|++++|++.|+++++..|..+. + ...|..++.++...|++++|+..++++++ +
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhc
Confidence 34667889999999999999999999998765211 2 33899999999999999999999999999 6
Q ss_pred ----CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 951 ----SPE-LSTF----VHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 951 ----~p~-~~~~----~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.|+ ..+| +.++.+|...|++++|+..|++.++...+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 897 7788 99999999999999999999998775433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=79.29 Aligned_cols=101 Identities=6% Similarity=-0.060 Sum_probs=91.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
.+...+..++..+...|++++|+..|+++....|. +...+..++.++...|++++|+..++++++ ..|+ ..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHH
Confidence 34567889999999999999999999999988775 788999999999999999999999999999 5675 88999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 959 HLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
.++.+|...|++++|+..++++.....
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 999999999999999999998876543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=76.33 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE---LSTFV 958 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~ 958 (997)
...+..++..+...|++++|+..++++.+..|. +..++..++.++...|++++|+..++++++ ..|+ ..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHH
Confidence 346778999999999999999999999988765 778899999999999999999999999999 4564 78999
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhhccCC
Q 001911 959 HLIKGLIRV-NKWEEALQLSYSICHTDI 985 (997)
Q Consensus 959 ~l~~~y~~~-g~~~eA~~~~~~~~~~~~ 985 (997)
.++.+|... |++++|++.++++.....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999999 999999999999887554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=78.41 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|++.++++.+..|. +..++..++.++...|++++|+..++++++ ..|+ ..++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l 90 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHHH
Confidence 457889999999999999999999999988765 788999999999999999999999999999 5675 8899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.+|...|++++|++.+++......
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999877544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=80.33 Aligned_cols=104 Identities=13% Similarity=-0.034 Sum_probs=82.4
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHH
Q 001911 811 AP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILI 889 (997)
Q Consensus 811 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 889 (997)
.| +...+..+...+...|++++|...|++..... +.+...|..++
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~lg 59 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD----------------------------------HYDARYFLGLG 59 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----------------------------------CccHHHHHHHH
Confidence 44 35566777788888899999998888876643 22455777888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+|...|++++|+..|+++....|. +...+..++.++...|++++|+..|+++++ ..|+
T Consensus 60 ~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 118 (142)
T 2xcb_A 60 ACRQSLGLYEQALQSYSYGALMDIN---EPRFPFHAAECHLQLGDLDGAESGFYSARA--LAAA 118 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 8889999999999999998888775 777888888888999999999999998888 4453
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=8e-07 Score=85.43 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=86.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
...|++++|+..+++..+.. +.+...|..+..+|...|++++|...+++.....
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------------- 74 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------------------------- 74 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence 45677777888887777652 2256777788888888888888888887765532
Q ss_pred HHHhccCCCCCChhhHHHHHHH-HHhcCCH--HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 870 VNEMGKTDSVPIVPAYRILIDH-YIKAGRL--EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 870 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
+.+...+..++.+ |...|++ ++|++.++++.+..|. +...+..++.++...|++++|...+++++
T Consensus 75 ---------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 75 ---------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp ---------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234466677777 6677887 8888888888777664 66777788888888888888888888888
Q ss_pred HcCCCCC
Q 001911 947 RKDGSPE 953 (997)
Q Consensus 947 ~~~~~p~ 953 (997)
+ ..|+
T Consensus 143 ~--~~p~ 147 (177)
T 2e2e_A 143 D--LNSP 147 (177)
T ss_dssp H--TCCT
T ss_pred h--hCCC
Confidence 7 4564
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-06 Score=75.41 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|++.++++....|. +...+..++.++...|++++|...++++++ ..|+ ..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 346778999999999999999999999988765 788899999999999999999999999999 5675 8899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+.+|...|++++|...+++....+..
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998876544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.7e-06 Score=72.67 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..... +.+...+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~ 49 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----------------------------------PHNHVLYSNRSAAYA 49 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----------------------------------CCcHHHHHHHHHHHH
Confidence 4567777888888888888888888876532 224556778888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
..|++++|++.++++.+..|. +...+..++.++...|++++|...++++++ ..|+ ..++..++.+.
T Consensus 50 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 50 KKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCHHHHHHHHHhh
Confidence 899999999999998887664 677888888888899999999999999888 5674 66666666553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-06 Score=91.36 Aligned_cols=129 Identities=12% Similarity=0.009 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN----------------FVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
..+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555555566666666666665553 232 478899999999999999999999998764
Q ss_pred CCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHH
Q 001911 844 YWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL 923 (997)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 923 (997)
. +.+..+|..++.+|...|++++|++.|+++.+..|. +..++.
T Consensus 226 ~----------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~a~~ 268 (336)
T 1p5q_A 226 D----------------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NKAAKT 268 (336)
T ss_dssp C----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHH
T ss_pred C----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 3 234568889999999999999999999999998876 788999
Q ss_pred HHHHHHHhcCCHHHH-HHHHHHHHH
Q 001911 924 LLIESLSLARKIDKA-FELYVDMIR 947 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A-~~~~~~~~~ 947 (997)
.++.++...|++++| ...|++|..
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 557777765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=8.6e-06 Score=72.33 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHh
Q 001911 779 VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEG 858 (997)
Q Consensus 779 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 858 (997)
...+..+...+...|++++|+++++++.... +.+..++..+..++...|++++|..+++++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------- 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------
Confidence 4456666666667777777777777766642 2246666677777777777777777777665432
Q ss_pred HhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh
Q 001911 859 FSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL 931 (997)
Q Consensus 859 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 931 (997)
+.+...+..++..|...|++++|.+.++++....|. +...+..++.++..
T Consensus 74 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 74 --------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAKQNLGNAKQK 123 (125)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred --------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHh
Confidence 123345666777777777777777777777766553 55555555555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.9e-06 Score=76.32 Aligned_cols=98 Identities=18% Similarity=0.116 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHL 960 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 960 (997)
+..++..+...|++++|++.++++.+..|+.......+..++.++...|++++|+..++++++ ..|+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHH
Confidence 556888999999999999999999987776333347888999999999999999999999998 4564 6789999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+.+|...|++++|+..++++....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-06 Score=89.20 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=69.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 708 NVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMID 787 (997)
Q Consensus 708 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 787 (997)
+...+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|...++++.+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34456666667777777777777777776643 33566777777777777777777777777776532 25667777777
Q ss_pred HHhccCCHHHHHHHHHHHHhC
Q 001911 788 GFGKVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~ 808 (997)
+|...|++++|+..|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777888888888887777653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.3e-06 Score=75.95 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..... +.+...+..++.+|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~la~~~~ 49 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD----------------------------------PTNMTYITNQAAVYF 49 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----------------------------------CccHHHHHHHHHHHH
Confidence 4567778888888899999988888876542 223456778888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAAS----RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRV 967 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~ 967 (997)
..|++++|+..++++....|...++ ..++..++.++...|++++|...++++++ ..|+......+..++...
T Consensus 50 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 50 EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 9999999999999888765432112 67788888888889999999999999888 457777677776665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-06 Score=79.58 Aligned_cols=102 Identities=16% Similarity=-0.054 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|+..|++..+.. +.+...|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~l~~~~ 55 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----------------------------------PANPIYLSNRAAAY 55 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CcCHHHHHHHHHHH
Confidence 46778889999999999999999999987643 22456788999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
...|++++|++.++++.+..|. +...|..++.++...|++++|+..|+++++ +.|+
T Consensus 56 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 111 (164)
T 3sz7_A 56 SASGQHEKAAEDAELATVVDPK---YSKAWSRLGLARFDMADYKGAKEAYEKGIE--AEGN 111 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHSS
T ss_pred HHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 9999999999999999998876 789999999999999999999999999999 5675
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=6.3e-06 Score=73.99 Aligned_cols=120 Identities=10% Similarity=-0.052 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIE 857 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 857 (997)
+...+..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...+++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------- 76 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID------------- 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-------------
Confidence 34556666777777788888888887777652 2256777777788888888888888887766532
Q ss_pred hHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH
Q 001911 858 GFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI 935 (997)
Q Consensus 858 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 935 (997)
+.+...+..++.+|...|++++|.+.++++.+..|. +...+..++.++...|++
T Consensus 77 ---------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 ---------------------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD---NETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTTC
T ss_pred ---------------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHhcC
Confidence 123446677788888888888888888888777654 666777777777666653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=80.77 Aligned_cols=103 Identities=10% Similarity=-0.018 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcC--------CCC-------CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSF--------SSN-------SAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..+...+..+.+.|++++|++.|++++.. .|. .+.+..+|..++.++...|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 46778999999999999999999999876 111 012567899999999999999999999999999
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 948 KDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 948 ~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
+.|+ ..+|..++.+|...|++++|+..+++.+....+.
T Consensus 92 --~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 92 --REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred --cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 6785 8899999999999999999999999988776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.6e-06 Score=75.93 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~l~~~~ 53 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----------------------------------PLVAVYYTNRALCY 53 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----------------------------------cCcHHHHHHHHHHH
Confidence 56777788888888888888888888776532 22345677788888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
...|++++|+..++++....|. +...+..++.++...|++++|+..++++++
T Consensus 54 ~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 54 LKMQQPEQALADCRRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888877665 677888888888888888888888888877
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.3e-06 Score=79.78 Aligned_cols=163 Identities=9% Similarity=-0.013 Sum_probs=113.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAP-NFVTYRVLINHCCASGL 829 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~ 829 (997)
...|++++|.+.++.+... .......+..+...+...|++++|+..+++..+. |..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3467888888855544432 2235667777888888888888888888887651 2222 35678888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 830 LDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP--IVPAYRILIDHYIKAGRLEVALELHEE 907 (997)
Q Consensus 830 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 907 (997)
+++|...+++..+.. .+ .+..| ....+..++..+...|++++|.+.+++
T Consensus 82 ~~~A~~~~~~al~~~--------------------------~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 82 WDAARRCFLEERELL--------------------------AS---LPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHH--------------------------HH---SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------------------------HH---cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999998876521 00 01011 123577899999999999999999999
Q ss_pred HhcCCC---CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 908 MTSFSS---NSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 908 ~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+....+ .......++..++.++...|++++|...++++++
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 875321 1111234567889999999999999999999887
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.7e-06 Score=75.87 Aligned_cols=104 Identities=12% Similarity=0.007 Sum_probs=90.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 959 (997)
+...+..++..+...|++++|++.|+++.+..|........+..++.++...|++++|+..++++++ ..|+ ..++..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHHHHH
Confidence 3557888999999999999999999999988764111178899999999999999999999999999 5674 889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 960 LIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 960 l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
++.+|...|++++|...+++.......
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999998876544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-05 Score=74.09 Aligned_cols=112 Identities=11% Similarity=-0.079 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC----hhhHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI----VPAYRIL 888 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l 888 (997)
+...+..+...+...|++++|...+++..+.. |+ ...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~~~~~~~~~~~ 71 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----------------------------------ATPQDQAVLHRNR 71 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----------------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----------------------------------ccchHHHHHHHHH
Confidence 56677777888888888888888888776532 33 3467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
+.+|...|++++|++.++++.+..|. +...+..++.++...|++++|...++++++ ..|+ ..++..+..+.
T Consensus 72 a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 72 AACHLKLEDYDKAETEASKAIEKDGG---DVKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCcc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHH
Confidence 88888888899998888888877654 677888888888888999999999988888 5575 56666666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=4e-06 Score=74.37 Aligned_cols=99 Identities=13% Similarity=-0.037 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
.+..+...+.+.|++++|...+++..+.. +.+...|..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------P~~~~a~~~lg~~~~~~ 64 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE----------------------------------PEREEAWRSLGLTQAEN 64 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------------CCCHHHHHHHHHHHHHc
Confidence 45667788899999999999999987753 23456888999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
|++++|+..++++.+..|. +...+..++.++...|++++|+..++++++ ..|+
T Consensus 65 g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 65 EKDGLAIIALNHARMLDPK---DIAVHAALAVSHTNEHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcC
Confidence 9999999999999999876 788999999999999999999999999998 5675
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.28 E-value=4.8e-06 Score=93.53 Aligned_cols=164 Identities=10% Similarity=0.004 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHH
Q 001911 793 GKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871 (997)
Q Consensus 793 g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 871 (997)
+++++|++.|+...+. .| ....|..+...|.+.|++++|...|++..+......... .....
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------~~~~~------ 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS---------EKESK------ 310 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC---------HHHHH------
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC---------hHHHH------
Confidence 3445555555443332 23 355677888888999999999999988765321000000 00000
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001911 872 EMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS 951 (997)
Q Consensus 872 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 951 (997)
+.. .-....|..++.+|.+.|++++|+..++++++..|. +..+|..++.+|...|++++|+..|+++++ +.
T Consensus 311 ~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~ 381 (457)
T 1kt0_A 311 ASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VN 381 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hC
Confidence 000 001357888999999999999999999999998876 889999999999999999999999999999 77
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHH-HHHHhhc
Q 001911 952 PE-LSTFVHLIKGLIRVNKWEEALQ-LSYSICH 982 (997)
Q Consensus 952 p~-~~~~~~l~~~y~~~g~~~eA~~-~~~~~~~ 982 (997)
|+ ..++..++.++.+.|++++|.+ .+.+|.+
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 86 7789999999999999998875 4455543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=86.05 Aligned_cols=156 Identities=12% Similarity=-0.042 Sum_probs=101.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC--------------HHHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN--------------FVTYRV 819 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~~~~~ 819 (997)
...|++++|.+.+..-.+.. ......+..+...+...|++++|+..|++.++... .|+ ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 33455555555554322110 01234556666677777778888777777776411 110 278888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
+..+|...|++++|+..+++..+.. +.+...+..++.+|...|+++
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~lg~~~~~~~~~~ 139 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKID----------------------------------KNNVKALYKLGVANMYFGFLE 139 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC----------------------------------cccHHHHHHHHHHHHHcccHH
Confidence 9999999999999999999887642 234567888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAF-ELYVDMIRK 948 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 948 (997)
+|++.|+++.+..|. +..++..++.++...++.+++. ..+..+...
T Consensus 140 ~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 140 EAKENLYKAASLNPN---NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999998775 7888888988888888877776 556666553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-05 Score=70.99 Aligned_cols=109 Identities=17% Similarity=0.079 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh----hhHHHHHHHH
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV----PAYRILIDHY 892 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~ 892 (997)
+..+...+...|++++|...++++.... |+. ..+..++.+|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------p~~~~~~~~~~~lg~~~ 49 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-----------------------------------PNGVYTPNALYWLGESY 49 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------SSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-----------------------------------CCCcccHHHHHHHHHHH
Confidence 3456778889999999999999887643 322 3677899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
...|++++|+..++++....|.......++..++.++...|++++|...++++++ ..|+ ..+......
T Consensus 50 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 50 YATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT--QYPGSDAARVAQER 118 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTSHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCChHHHHHHHH
Confidence 9999999999999999988776332377889999999999999999999999999 4576 444443333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-06 Score=97.01 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
.+...+.+.|++++|...+++..+.. +.+...|..++.+|.+.|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~----------------------------------p~~~~~~~~lg~~~~~~g~~ 56 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN----------------------------------PSNAIYYGNRSLAYLRTECY 56 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC----------------------------------CccHHHHHHHHHHHHHhcCH
Confidence 34455678899999999999887642 22356888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH--HHhcCCHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG--LIRVNKWEEALQ 975 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--y~~~g~~~eA~~ 975 (997)
++|++.++++.+..|. +..++..++.+|...|++++|++.|+++++ ..|+ ..++..++.+ +.+.|++++|++
T Consensus 57 ~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 57 GYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998875 788999999999999999999999999999 5675 5677777777 999999999999
Q ss_pred HHH
Q 001911 976 LSY 978 (997)
Q Consensus 976 ~~~ 978 (997)
.++
T Consensus 132 ~~~ 134 (477)
T 1wao_1 132 GDE 134 (477)
T ss_dssp ---
T ss_pred ccc
Confidence 998
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-06 Score=74.41 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-------H
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-E-------L 954 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-------~ 954 (997)
..+..++..+...|++++|+..++++.+..|. +...+..++.++...|++++|...++++++. .| + .
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 79 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--ccccchhHHHHH
Confidence 45778999999999999999999999988765 7888999999999999999999999999984 34 2 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
.++..++.+|...|++++|.+.++++.....
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999999887543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-05 Score=89.20 Aligned_cols=172 Identities=10% Similarity=-0.024 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 001911 759 KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK----------VDKCLELLRQMSSKGCAP-NFVTYRVLINHCCAS 827 (997)
Q Consensus 759 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~ 827 (997)
..++|++.++++.+.... +...|+.--..+...|+ ++++++.++++.+. .| +..+|..-..++.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 346778888888876433 56667666666666666 89999999999986 45 788899888888898
Q ss_pred C--CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHH
Q 001911 828 G--LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG-RLEVALEL 904 (997)
Q Consensus 828 g--~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~ 904 (997)
| ++++++.+++++.+.. +-+..+|+.....+.+.| .++++++.
T Consensus 121 ~~~~~~~el~~~~k~l~~d----------------------------------~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD----------------------------------ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhc----------------------------------cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 9 7799999999988754 234557888888888888 89999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLA--------------RKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
++++++..|. |..+|...+.++... +++++|++.++++++ ..|+ ..+|..+..++.+.|+
T Consensus 167 ~~~~I~~~p~---n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRNFS---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHTTTTTTCC---CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCC---CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 9999998876 889999988887763 568999999999999 6785 8899999999999998
Q ss_pred HHH
Q 001911 970 WEE 972 (997)
Q Consensus 970 ~~e 972 (997)
+++
T Consensus 242 ~~~ 244 (567)
T 1dce_A 242 HDV 244 (567)
T ss_dssp CSC
T ss_pred ccc
Confidence 665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.20 E-value=8.9e-06 Score=88.20 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...|..++.+|.+.|++++|++.++++++..|. +..++..++.+|...|++++|+..|+++++ +.|+ ..++..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l 347 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 347888999999999999999999999998875 889999999999999999999999999999 6785 7889999
Q ss_pred HHHHHhcCCHHHHHHH
Q 001911 961 IKGLIRVNKWEEALQL 976 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~ 976 (997)
+.++...++.+++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=4.8e-06 Score=75.93 Aligned_cols=111 Identities=9% Similarity=-0.065 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHY 892 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 892 (997)
...+......+.+.|++++|+..|++..+.... .... ......| +...|..++.++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~-~~~~----------------------~a~~~~~~~a~a~~n~g~al 67 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPE----------------------EAFDHAGFDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTT----------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-Ccch----------------------hhhhhccchHHHHHHHHHHH
Confidence 344666777888899999999999887653210 0000 0000001 122789999999
Q ss_pred HhcCCHHHHHHHHHHHhcC-------CCCCCcchhhH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 893 IKAGRLEVALELHEEMTSF-------SSNSAASRNST----LLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
.+.|++++|+..++++++. .|. +...| ...+.++...|++++|+..|+++++ +.|
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p 133 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIE 133 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCC
Confidence 9999999999999999998 875 88899 9999999999999999999999998 556
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=9e-06 Score=76.59 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTY-------WPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAY 885 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~ 885 (997)
...+......+.+.|++++|...|++..... .|.+... ..+ .|. ...|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-------------------~~~-----~~~~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-------------------VEL-----DRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-------------------HHH-----HHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-------------------HHH-----HHHHHHHH
Confidence 3455666677777777777777777665420 0000000 000 122 3478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-L-STFVHLIKG 963 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~ 963 (997)
..++.+|.+.|++++|+..+++++..+|. +..+|..++.++...|++++|+..|+++++ +.|+ . .+...|..+
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 88999999999999999999999998876 889999999999999999999999999999 6786 4 456566666
Q ss_pred HHhcC
Q 001911 964 LIRVN 968 (997)
Q Consensus 964 y~~~g 968 (997)
..+.+
T Consensus 142 ~~~~~ 146 (162)
T 3rkv_A 142 TERRA 146 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=75.62 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
..++..+...+...|++++|...+++..+.. .+.. ........+..++..|.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~--~~~~~~~~~~~l~~~~~ 60 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--------------------------KEFG--DKAAERIAYSNLGNAYI 60 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHHT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------------------------HHhC--CchHHHHHHHHHHHHHH
Confidence 4567788888999999999999998876421 0000 00000136778999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRKD----GSPE-LSTFVHLIKGLI 965 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~y~ 965 (997)
..|++++|++.++++....+.. .....++..++.++...|++++|...++++++.. ..+. ..++..++.+|.
T Consensus 61 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 61 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 9999999999999987643211 1125577889999999999999999999988631 1111 457889999999
Q ss_pred hcCCHHHHHHHHHHhhcc
Q 001911 966 RVNKWEEALQLSYSICHT 983 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~~ 983 (997)
..|++++|.+.+++....
T Consensus 141 ~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 999999999999987653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-06 Score=75.60 Aligned_cols=94 Identities=9% Similarity=-0.040 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------H
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-------L 954 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~ 954 (997)
...+..++..+...|++++|++.|+++.+..|. +..++..++.++...|++++|++.++++++ ..|+ .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 456788999999999999999999999998775 788999999999999999999999999999 6675 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
.++..++.++...|++++|+..++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 67889999999999988887766654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.2e-06 Score=75.70 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA 973 (997)
.|++++|++.|+++.+..+..+.+..++..++.++...|++++|+..++++++ ..|+ ..++..++.+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHHH
Confidence 35555555666555554210012445555555555555666666666666555 3453 55555566666666666666
Q ss_pred HHHHHHhhc
Q 001911 974 LQLSYSICH 982 (997)
Q Consensus 974 ~~~~~~~~~ 982 (997)
+..+++.+.
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.6e-05 Score=83.43 Aligned_cols=172 Identities=10% Similarity=0.017 Sum_probs=112.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNV----VTYTAMIDGFGKVGKVDKCLELLRQMSS----KGCAPN-FVT 816 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~~ 816 (997)
+..++..|.+.|++++|.+.+.++... +..++. ...+.+...+...|++++|++++++... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 566777888888888888888776542 111122 1223333344566888888888887654 233333 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhc
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKA 895 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 895 (997)
+..+...+...|++++|..++++....... .+..+. ...+..++..|...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKK-----------------------------LDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-----------------------------SSCSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHh-----------------------------cccchhHHHHHHHHHHHHHHh
Confidence 778888899999999999988876542110 011122 34677788889999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAA----SRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
|++++|...++++....+.... ....+..++..+...|++++|...+.++.+
T Consensus 189 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999998887754221111 134555666677778899999888887765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.4e-06 Score=89.62 Aligned_cols=98 Identities=9% Similarity=-0.003 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.|..++.+|.+.|++++|+..++++++..|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..++..|..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRA 306 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 6788999999999999999999999998775 889999999999999999999999999998 6785 677888888
Q ss_pred H-HHhcCCHHHHHHHHHHhhccCCc
Q 001911 963 G-LIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 963 ~-y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+ ....+..+++...++++.+....
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 7 44567788899999988775543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.2e-05 Score=68.01 Aligned_cols=99 Identities=12% Similarity=-0.045 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..+.. +.+...+..++.+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~~a~~~~ 51 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD----------------------------------PEESKYWLMKGKALY 51 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC----------------------------------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------------------------------cCCHHHHHHHHHHHH
Confidence 3445556666666666666666666655432 122345556666666
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA-RKIDKAFELYVDMIR 947 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 947 (997)
..|++++|++.++++.+..|. ..+...+..++.++... |++++|.+.++++++
T Consensus 52 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 52 NLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 666777777666666665432 11455666666666666 677777776666666
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.8e-06 Score=72.02 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=71.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
..|++++|+..+++..+... ..|+ ...+..++.+|...|++++|++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~--------------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 49 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL--------------------------------QGKDLAECYLGLGSTFRTLGEYRKAEAV 49 (117)
T ss_dssp -----CCCHHHHHHHHSSCC--------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC--------------------------------CCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35778888888888765320 0132 34788899999999999999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++++.+..|. +..++..++.++...|++++|+..++++++ ..|+
T Consensus 50 ~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~ 93 (117)
T 3k9i_A 50 LANGVKQFPN---HQALRVFYAMVLYNLGRYEQGVELLLKIIA--ETSD 93 (117)
T ss_dssp HHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCC
T ss_pred HHHHHHhCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 9999998876 788999999999999999999999999998 4564
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00012 Score=84.02 Aligned_cols=173 Identities=11% Similarity=0.004 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGK----------TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
..++|++.++++++.. +-+...|+.-...+.+.|+ ++++++.++++.+...+ +..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3456677777777653 3345566666666666666 88899999988887555 7778888777888888
Q ss_pred --CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 794 --KVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASG-LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 794 --~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
+++++++.++++.+. .| |..+|+.-..++.+.| .+++++++++++.+..
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~------------------------- 174 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------------------------- 174 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------------------------
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-------------------------
Confidence 679999999999886 34 7888888888888888 8888888888877643
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH
Q 001911 870 VNEMGKTDSVPIVPAYRILIDHYIKA--------------GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI 935 (997)
Q Consensus 870 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 935 (997)
+.+..+|+..+.++.+. +.+++|++.++++....|+ +..+|..+.+.+.+.+++
T Consensus 175 ---------p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~---~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 175 ---------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp ---------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS---CSHHHHHHHHHHSCCCCC
T ss_pred ---------CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC---CccHHHHHHHHHhcCCCc
Confidence 22344566666555542 5689999999999998886 899999999999888875
Q ss_pred HH
Q 001911 936 DK 937 (997)
Q Consensus 936 ~~ 937 (997)
++
T Consensus 243 ~~ 244 (567)
T 1dce_A 243 DV 244 (567)
T ss_dssp SC
T ss_pred cc
Confidence 55
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=84.56 Aligned_cols=152 Identities=14% Similarity=0.006 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH 823 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~ 823 (997)
...+..+...+.+.|++++|...|++..+. .|+.. .+...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344555555666666666666666666553 22221 1223333333332221 1378889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALE 903 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 903 (997)
|.+.|++++|+..+++..+.. +.+..+|..++.+|...|++++|++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE----------------------------------EKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987643 2345688899999999999999999
Q ss_pred HHHHHhcCCCCCCcchhhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 904 LHEEMTSFSSNSAASRNSTLLLIESL-SLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.|+++.+..|. +..++..+..+. ...+..+++.+.|+++.. ..|+
T Consensus 286 ~l~~al~l~p~---~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~--~~p~ 331 (338)
T 2if4_A 286 DFRKAQKYAPD---DKAIRRELRALAEQEKALYQKQKEMYKGIFK--GKDE 331 (338)
T ss_dssp HHHHTTC--------------------------------------------
T ss_pred HHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCC
Confidence 99999998775 677777777764 345778899999999988 5564
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0021 Score=71.45 Aligned_cols=197 Identities=11% Similarity=-0.003 Sum_probs=143.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC
Q 001911 646 IDGLCKVHKVREAHDLLDAMSVVGCEPN----------------NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN-PN 708 (997)
Q Consensus 646 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 708 (997)
...+.+.|++++|.+.|..+.+...... ...+..++..|...|++++|.+.+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3457889999999999999987542211 134778999999999999999999987763211 12
Q ss_pred HH----hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--
Q 001911 709 VY----TYGSLIDRLFKDKRLDLALKVISKMLE----DSYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GC-- 775 (997)
Q Consensus 709 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 775 (997)
.. +.+.+...+...|+.+.|..+++.... .+..+ -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 223333344467899999999988764 22222 2467788999999999999999999988753 11
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 776 YP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK--GC-AP-N--FVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 776 ~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
.+ ....+..++..|...|++++|..++++.... .+ .| . ...+..++..+...|++++|...+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2457888889999999999999999887652 11 22 1 45677778888899999999999888754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.7e-05 Score=71.19 Aligned_cols=139 Identities=11% Similarity=0.066 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRK 854 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 854 (997)
.++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|..++++.....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------- 79 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA---------- 79 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------
Confidence 3556666677777788888777777665310 011 2477888899999999999999998876421
Q ss_pred HHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCcchhhHHHHHHHHH
Q 001911 855 VIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSS---NSAASRNSTLLLIESLS 930 (997)
Q Consensus 855 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 930 (997)
... +..+ ....+..++..+...|++++|++.++++.+..+ ........+..++..+.
T Consensus 80 ----------------~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 80 ----------------RQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ----------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------HHh---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 000 0011 123577899999999999999999999876421 11123567788999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001911 931 LARKIDKAFELYVDMIR 947 (997)
Q Consensus 931 ~~g~~~~A~~~~~~~~~ 947 (997)
..|++++|...++++++
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 99999999999999886
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=90.42 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=67.6
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHH
Q 001911 787 DGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIV 865 (997)
Q Consensus 787 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (997)
..+.+.|++++|++.|++.++. .| +...|..+..+|.+.|++++|+..+++..+..
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------------------- 70 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------------------- 70 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------------------
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------
Confidence 3345566666666666666654 34 45666666666666666666666666655432
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH--HHhcCCHHHHHHHHH
Q 001911 866 SLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES--LSLARKIDKAFELYV 943 (997)
Q Consensus 866 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 943 (997)
+.+...+..++.+|...|++++|++.++++.+..|. +...+..++.+ +...|++++|++.++
T Consensus 71 -------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 71 -------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 122345566666666666666666666666665544 44455555554 555666666666666
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.93 E-value=6.6e-05 Score=84.21 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...|..+..+|.+.|++++|+..+++..+.. +.+..+|..++.+|.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD----------------------------------SANEKGLYRRGEAQL 362 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----------------------------------CccHHHHHHHHHHHH
Confidence 5788899999999999999999999987643 234568889999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE-LYVDMIR 947 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 947 (997)
..|++++|+..|+++++..|. +..++..++.++...+++++|.+ .|++|..
T Consensus 363 ~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 363 LMNEFESAKGDFEKVLEVNPQ---NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876 77899999999999999887764 5666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00013 Score=81.48 Aligned_cols=133 Identities=12% Similarity=0.043 Sum_probs=99.5
Q ss_pred HHhccCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHh
Q 001911 788 GFGKVGKVDKCLELLRQMSSK---GCAPN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFS 860 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 860 (997)
.+...|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 456789999999999887752 22232 568899999999999999999999987642
Q ss_pred HhHHHHHHHHHHhccCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCC
Q 001911 861 REFIVSLGLVNEMGKTDSVPIV-PAYRILIDHYIKAGRLEVALELHEEMTSF-----SSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 861 ~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
..+..... .|+. .+++.|+..|..+|++++|+.+++++.+. +++.+.-..+...+..++...++
T Consensus 381 ---------~~~~lG~~-Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 381 ---------YMKLYHHN-NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ---------HHHHSCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 11222111 2332 37889999999999999999999998753 44433344555677777788899
Q ss_pred HHHHHHHHHHHHH
Q 001911 935 IDKAFELYVDMIR 947 (997)
Q Consensus 935 ~~~A~~~~~~~~~ 947 (997)
+++|+.+|.++.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.92 E-value=6.6e-05 Score=62.16 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|++.++++....|. +..++..++.++...|++++|+..++++++ ..|+ ..++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 346788999999999999999999999988765 788899999999999999999999999999 5675 7889999
Q ss_pred HHHHHhcC
Q 001911 961 IKGLIRVN 968 (997)
Q Consensus 961 ~~~y~~~g 968 (997)
+.+|.+.|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99987765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.6e-05 Score=83.34 Aligned_cols=133 Identities=11% Similarity=-0.001 Sum_probs=101.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 901 (997)
.+..+|++++|+.++++..+..- +... ...|+ ..+++.|+..|..+|++++|
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~--------------------------~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA 370 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQE--------------------------PVFA-DTNLYVLRLLSIASEVLSYLQAYEEA 370 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHT--------------------------TTBC-TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH--------------------------HhcC-CCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 46688999999999988765310 0000 00122 23788999999999999999
Q ss_pred HHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCC
Q 001911 902 LELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK---DGSPE----LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 902 ~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~y~~~g~ 969 (997)
+.+++++++. +++.+.-..+++.|+..|...|++++|+.+|+++++- -+=|| ......|..++.+.|+
T Consensus 371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999998753 5554455678889999999999999999999998751 12244 3467789999999999
Q ss_pred HHHHHHHHHHhhc
Q 001911 970 WEEALQLSYSICH 982 (997)
Q Consensus 970 ~~eA~~~~~~~~~ 982 (997)
+++|..++.++.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.88 E-value=9.1e-05 Score=80.22 Aligned_cols=91 Identities=7% Similarity=-0.107 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...|..+..+|.+.|++++|+..+++..+.. +.+..+|..++.+|
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~a~~~lg~~~ 317 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID----------------------------------PSNTKALYRRAQGW 317 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC----------------------------------chhHHHHHHHHHHH
Confidence 46778888999999999999999999887642 22355788899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
...|++++|++.++++.+..|. +..++..+..++...++.+++.+
T Consensus 318 ~~~g~~~eA~~~l~~Al~l~P~---~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 318 QGLKEYDQALADLKKAQEIAPE---DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988775 77788888888888887777654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.4e-05 Score=66.83 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
...+..++..|...|++++|++.++++....|. +...|..++.++...|++++|...|+++++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666666666666666666666666665554 555666666666666666666666666665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-05 Score=72.53 Aligned_cols=89 Identities=9% Similarity=-0.024 Sum_probs=68.5
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK----------IDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
.+.+.+++|++.++++.+..|+ +...|..++.++...++ +++|+..|+++++ +.|+ ..+|+.++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 3556778888888888887775 77788888887777665 4588888888888 6786 77888888
Q ss_pred HHHHhcC-----------CHHHHHHHHHHhhccCCc
Q 001911 962 KGLIRVN-----------KWEEALQLSYSICHTDIN 986 (997)
Q Consensus 962 ~~y~~~g-----------~~~eA~~~~~~~~~~~~~ 986 (997)
.+|...| ++++|++.+++.++....
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 8888774 788888888887776554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00013 Score=66.17 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 793 GKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 793 g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
+++++|+++|++..+.| .|... +...|...+.+++|..++++..+.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-----------------------------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-----------------------------
Confidence 45566666666666655 33332 555555555666666666655442
Q ss_pred hccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHH
Q 001911 873 MGKTDSVPIVPAYRILIDHYIK----AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVD 944 (997)
Q Consensus 873 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 944 (997)
.+..++..|+.+|.. .+++++|++.|+++.+.. +...+..|+..|.. .+++++|...|++
T Consensus 55 -------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 55 -------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp -------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 233445556666665 566666666666666542 55566666666666 5666666666666
Q ss_pred HHHcC
Q 001911 945 MIRKD 949 (997)
Q Consensus 945 ~~~~~ 949 (997)
+.+.|
T Consensus 123 Aa~~g 127 (138)
T 1klx_A 123 ACRLG 127 (138)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 66643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00028 Score=63.93 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=81.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
|+..|...+..++|++.|+++.+.. +...+..|+..|.. .+++++|+..|+++.+.| ++.++..|+.+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~ 102 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYK 102 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHH
Confidence 8888988899999999999999874 78899999999988 789999999999999954 67889999999
Q ss_pred HHh----cCCHHHHHHHHHHhhccCCc
Q 001911 964 LIR----VNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 964 y~~----~g~~~eA~~~~~~~~~~~~~ 986 (997)
|.. .+++++|..++++..+.|-.
T Consensus 103 y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 103 QYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999 89999999999999887643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=7.8e-05 Score=67.76 Aligned_cols=72 Identities=8% Similarity=0.118 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhcCCH----------HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC-----------CHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRL----------EVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR-----------KIDKAF 939 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~ 939 (997)
+...|..++.++...+++ ++|+..|+++++.+|+ +..+|..++.+|...| ++++|+
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~ 111 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence 456888899888888764 6999999999999886 8899999999998874 899999
Q ss_pred HHHHHHHHcCCCCCHHHH
Q 001911 940 ELYVDMIRKDGSPELSTF 957 (997)
Q Consensus 940 ~~~~~~~~~~~~p~~~~~ 957 (997)
+.|+++++ +.|+...|
T Consensus 112 ~~~~kAl~--l~P~~~~y 127 (158)
T 1zu2_A 112 QFFQQAVD--EQPDNTHY 127 (158)
T ss_dssp HHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHH--hCCCCHHH
Confidence 99999999 78975444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00022 Score=60.40 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=65.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD-GSPELSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ 959 (997)
+...+..++.+|...|++++|++.|+++.+..|. +..+|..++.+|...|++++|++.|+++++.. ..++......
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 3457888999999999999999999999998876 77789999999999999999999999998731 1123444444
Q ss_pred HHHHHHhc
Q 001911 960 LIKGLIRV 967 (997)
Q Consensus 960 l~~~y~~~ 967 (997)
+...+.+.
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 44444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0002 Score=62.56 Aligned_cols=80 Identities=16% Similarity=0.012 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
+|++.++++.+..|. +...+..++.++...|++++|+..++++++ ..|+ ..++..++.+|...|++++|...++
T Consensus 3 ~a~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTD---NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578899999988775 788999999999999999999999999999 5675 7899999999999999999999999
Q ss_pred HhhccC
Q 001911 979 SICHTD 984 (997)
Q Consensus 979 ~~~~~~ 984 (997)
+.....
T Consensus 78 ~al~~~ 83 (115)
T 2kat_A 78 SGLAAA 83 (115)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=60.79 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=59.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 918 SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
+...+..++.++...|++++|+..++++++ ..|+ ..+|..++.+|...|++++|++.+++.+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 788999999999999999999999999999 6685 789999999999999999999999988754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=7.3e-05 Score=64.69 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~lg~~~ 48 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----------------------------------PQNPVGYSNKAMAL 48 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------------------CCCHHHHHHHHHHH
Confidence 45567777888888888888888888776532 22345677788888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcc---hhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAAS---RNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
...|++++|++.++++.+..|..... ...+..++.++...|++++|+..++
T Consensus 49 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 49 IKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 88888888888888888876641000 5556666666666666665555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00017 Score=60.81 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRN-STLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
..+..+...|++++|++.++++.+..|. +.. .+..++.++...|++++|++.|+++++ ..|+ ..++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~----- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE--LNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSTHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHH-----
Confidence 4678889999999999999999988765 677 899999999999999999999999999 5686 444422
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 001911 965 IRVNKWEEALQLSYSICH 982 (997)
Q Consensus 965 ~~~g~~~eA~~~~~~~~~ 982 (997)
+.+.+++..++++..
T Consensus 75 ---~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMY 89 (99)
T ss_dssp ---HHHHHHHHHHCCTTH
T ss_pred ---HHHHHHHHHHHHHhc
Confidence 567777777776544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0017 Score=53.29 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~l~~~~ 53 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PNNAEAWYNLGNAY 53 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----------------------------------CCCHHHHHHHHHHH
Confidence 35678888899999999999999999887642 22345788899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR 933 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 933 (997)
...|++++|++.++++.+..|. +...+..++.++...|
T Consensus 54 ~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 54 YKQGDYDEAIEYYQKALELDPN---NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcC
Confidence 9999999999999999988765 7778888887776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00088 Score=73.40 Aligned_cols=90 Identities=9% Similarity=-0.033 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK-----D-GSPE-LSTFVHLI 961 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~ 961 (997)
..|++++|+.+++++++. .++.+.-..+++.|+.+|...|++++|+.+++++++. | ..|+ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999887653 3433334577888999999999999999999998752 1 1333 35788999
Q ss_pred HHHHhcCCHHHHHHHHHHhhcc
Q 001911 962 KGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.+|..+|++++|..++++.+..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.002 Score=70.81 Aligned_cols=94 Identities=7% Similarity=-0.070 Sum_probs=73.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC---C-HHH
Q 001911 889 IDHYIKAGRLEVALELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK---DGSP---E-LST 956 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p---~-~~~ 956 (997)
+..+..+|++++|+++++++++. ++..+.-..+++.|+.+|...|++++|+.+++++++. -+-| + ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34566789999999999998764 2333334567888999999999999999999988752 1223 3 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
++.|+.+|..+|++++|..++++.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999988765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0022 Score=57.44 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR---KIDKAFELYVDMIRKDGSP-E-LSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~y~~~g~~~eA 973 (997)
..+.+.|++..+.++ ++..+...+++++.+.+ +.++++.+++++.+.+ .| + ...++.|+-+|.+.|++++|
T Consensus 15 ~~~~~~y~~e~~~~~---~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHTTC---CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 344555555544332 36666666777777766 4557777777777642 25 2 45667777777777777777
Q ss_pred HHHHHHhhccCCccch
Q 001911 974 LQLSYSICHTDINWLQ 989 (997)
Q Consensus 974 ~~~~~~~~~~~~~~~~ 989 (997)
+++++.+++....|.+
T Consensus 91 ~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCCCCHH
Confidence 7777777776666644
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0018 Score=70.94 Aligned_cols=95 Identities=11% Similarity=-0.063 Sum_probs=72.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
..|++++|+.++++..+... +.... ..|+ ..+++.|+.+|..+|++++|+.+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~--------------------------~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~ 362 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS--------------------------SVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKY 362 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT--------------------------TTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhh--------------------------CccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 45789999999988764210 00000 0122 23788999999999999999999
Q ss_pred HHHHhc-----CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 905 HEEMTS-----FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 905 ~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++++++ .+++.+.-...++.|+..|..+|++++|+.+|+++++
T Consensus 363 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 363 GQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 999875 3455455577888999999999999999999999976
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0059 Score=67.03 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=76.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcC
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI----VPAYRILIDHYIKAG 896 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 896 (997)
+..+..+|++++|+.++++..+..... +.|+ ..+++.|+..|..+|
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~------------------------------lg~~h~~~~~~~~~L~~~y~~~g 343 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSER------------------------------LPDINIYQLKVLDCAMDACINLG 343 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCC------------------------------CCTTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCc------------------------------CCccchHHHHHHHHHHHHHHhhc
Confidence 445667899999999999887543111 1122 237888999999999
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 897 RLEVALELHEEMTS-----FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 897 ~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++++|+.++++++. .++..+.-...++.|+..|...|++++|+.+|+++++
T Consensus 344 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 344 LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999875 3455445567888999999999999999999999876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0033 Score=51.83 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGR---LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+...+..++.++...++ .++|..+++++++.+|. +......++..+...|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455556655544433 56666666666666654 666666666666666666666666666666
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0054 Score=50.52 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=60.4
Q ss_pred cchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 917 ASRNSTLLLIESLSLARK---IDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.+...+..++.++...++ .++|..+++++++ ..|+ +.+...++..+++.|++++|+..|++++..+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 478889999998865544 7999999999999 7796 899999999999999999999999999987765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.016 Score=60.54 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=63.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHL 960 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 960 (997)
+...|..++..+...|++++|+..++++...+| +...|..+++.+...|++++|.+.|+++.. +.|...+|...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~----s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM----SWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 344677777777778999999999999999863 567788899999999999999999999999 78987665544
Q ss_pred HHH
Q 001911 961 IKG 963 (997)
Q Consensus 961 ~~~ 963 (997)
..+
T Consensus 350 ~~l 352 (372)
T 3ly7_A 350 ENG 352 (372)
T ss_dssp HHS
T ss_pred hCc
Confidence 433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0069 Score=50.62 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 001911 924 LLIESLSLARKIDKAFELYVDMIRKDGSPE-LS-TFVHLIKGLIRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
..+..+...|++++|+..++++++ ..|+ .. ++..++.+|...|++++|++.+++.+.......
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 467778899999999999999999 5685 77 999999999999999999999999988766543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.055 Score=56.59 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHH
Q 001911 811 APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILID 890 (997)
Q Consensus 811 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 890 (997)
..+..+|..+...+...|++++|...++++... .|+...|..++.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----------------------------------n~s~~a~~llG~ 318 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-----------------------------------EMSWLNYVLLGK 318 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------------------CCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------------------------------CCCHHHHHHHHH
Confidence 346778888877777779999999999888764 266667778888
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
.+.-.|++++|++.|+++...+|.
T Consensus 319 ~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 319 VYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC
Confidence 899999999999999998888763
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.025 Score=47.77 Aligned_cols=75 Identities=13% Similarity=-0.032 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCC----CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSS----NSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
-...|+..+.+.|+++.|+..++.+.+..+ .......++..|+.++.+.|++++|+..++++++ +.|+ ..+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~ 84 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHh
Confidence 456799999999999999999999886421 1235778899999999999999999999999999 7886 44444
Q ss_pred HH
Q 001911 959 HL 960 (997)
Q Consensus 959 ~l 960 (997)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.23 Score=60.12 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 001911 713 GSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV 792 (997)
Q Consensus 713 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 792 (997)
..++..+.+.|..+.|+++.+. |. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4445555556666665544421 10 0112233456666666554332 2455566666666666
Q ss_pred CCHHHHHHHHHHHH
Q 001911 793 GKVDKCLELLRQMS 806 (997)
Q Consensus 793 g~~~~A~~l~~~m~ 806 (997)
|+++.|.+.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 66666666665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.32 Score=58.85 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=103.3
Q ss_pred HHHHcCChHHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHH
Q 001911 209 KCCRNGFWNVALE-ELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWK 287 (997)
Q Consensus 209 ~y~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 287 (997)
.....+++++|.+ ++.. + |+......++..+.+.|..+.|..+.+.. ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345788888876 4421 1 11223377778888888888887665321 11234456789999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001911 288 EALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEG 367 (997)
Q Consensus 288 ~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 367 (997)
+|.++.+.. .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+....+.+.....|
T Consensus 670 ~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 670 LARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999998773 4678999999999999999999999998754 3445555555777776666655555554
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 368 CYPSPRIFHSLIHAYCRSGDYSYAYKLLSKM 398 (997)
Q Consensus 368 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (997)
-++.....|.+.|++++|.+++.++
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2344455566677777777766544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.035 Score=47.72 Aligned_cols=91 Identities=20% Similarity=0.159 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDK---AFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~ 970 (997)
..+..+.+.|++....++ ++..+-..++|++.+..+.+. ++.+++.+.+.+ .|+ ....+.|+-++.+.|+|
T Consensus 15 ~~l~~~~~~y~~e~~~~~---~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 344455555665554332 466777778888877765444 788888877742 242 45777888888888888
Q ss_pred HHHHHHHHHhhccCCccchh
Q 001911 971 EEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 971 ~eA~~~~~~~~~~~~~~~~~ 990 (997)
++|.++++.+++....|.+.
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 88888888888877776543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.066 Score=47.97 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=60.1
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHHHhcCC-CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAG---RLEVALELHEEMTSFS-SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++..+...++.++.+.+ +.++++.+++...+.. |. .+...+..|+-++.+.|++++|.++++.+++ ..|+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 67777788999999988 6779999999998765 31 2577888899999999999999999999999 7896
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.066 Score=45.08 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=56.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 918 SRNSTLLLIESLSLARKIDKAFELYVDMIRKD-----GSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+..-...++..+...|+++.|+..|+++++.- ..+ ...++..|+.+|.+.|++++|+.++++++.....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 34456678999999999999999999998742 112 3678999999999999999999999998765543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.08 E-value=1.2 Score=40.87 Aligned_cols=127 Identities=12% Similarity=0.120 Sum_probs=78.5
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
....|+++.|.++.+++ .+...|..|.+.....|+++-|...|.+...
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------------------- 62 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------------------- 62 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------------------------
Confidence 35678888888877665 3567788888888888888888888876532
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+..|.-.|.-.|+.+.-.++.+.+.... -++.-..++...|++++++++|.+.
T Consensus 63 ----------------~~~L~~Ly~~tg~~e~L~kla~iA~~~g--------~~n~af~~~l~lGdv~~~i~lL~~~--- 115 (177)
T 3mkq_B 63 ----------------FDKLSFLYLVTGDVNKLSKMQNIAQTRE--------DFGSMLLNTFYNNSTKERSSIFAEG--- 115 (177)
T ss_dssp ----------------HHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHHHHHHHHHT---
T ss_pred ----------------HHHHHHHHHHhCCHHHHHHHHHHHHHCc--------cHHHHHHHHHHcCCHHHHHHHHHHC---
Confidence 3456666777777766666555554432 1233333445678888888776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 949 DGSPELSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 949 ~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
|..|.. ..+++. -|-.+.|.++.+.+
T Consensus 116 ~r~~eA---~~~A~t---~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 116 GSLPLA---YAVAKA---NGDEAAASAFLEQA 141 (177)
T ss_dssp TCHHHH---HHHHHH---TTCHHHHHHHHHHT
T ss_pred CChHHH---HHHHHH---cCcHHHHHHHHHHh
Confidence 222321 112222 35566676666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.048 Score=54.50 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhc-----CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKA-----GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA-RKIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 947 (997)
.|..|+..|... |+.++|.+.|+++++..|+ .+..++..++..++.. |++++|.+.+++++.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~--~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA--HDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT--TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 455555555553 5666666666666665543 1244555555555553 566666666666665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.17 Score=43.66 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=55.0
Q ss_pred cchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchh
Q 001911 917 ASRNSTLLLIESLSLARK---IDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~ 990 (997)
+...+-..++|++.+..+ ..+++.+++.+.+.+ |+ ...++.|+-++.+.|+|++|.++.+.+++....+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 566777778888877754 567888888888743 63 5678888888888888888888888888887777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.12 Score=51.62 Aligned_cols=67 Identities=10% Similarity=0.002 Sum_probs=53.8
Q ss_pred chhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHhhccCCc
Q 001911 918 SRNSTLLLIESLSL-----ARKIDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRV-NKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 918 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~-g~~~eA~~~~~~~~~~~~~ 986 (997)
+...|..|+..|.. -|+.++|.++|+++++ +.|+ ..+++.+++.|+.. |++++|.+++++.+.....
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45577777777777 4899999999999999 7784 67888888988885 8899999999988876554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.23 Score=43.44 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=48.7
Q ss_pred cchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchh
Q 001911 917 ASRNSTLLLIESLSLARK---IDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~ 990 (997)
++..+-..++|++.+..+ ..+++.+++.+.+. .|+ ....+.|+-++.+.|+|++|.++.+.+++....|.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 466666667777776653 45677777777763 352 4567777777777777777777777777777666543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.17 Score=45.63 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=72.3
Q ss_pred CCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCC---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 877 DSVPIVP--AYRILIDHYIKAGRLEVALELHEEMTSFS---SNSA---ASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 877 ~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
|+.|.-. ++..-+..+...|.++.|+-+.+.+.... +... ....++..++.++...|+|..|...|++++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4455543 34455677888999999999988876542 1110 11236678899999999999999999997431
Q ss_pred C------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 949 D------------------------GSPELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 949 ~------------------------~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
. ..+|.+.-+.++.+|.+.|++++|+..++.|-.
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0 111246778899999999999999999996643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.82 E-value=8.8 Score=45.47 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCH--HhH
Q 001911 643 GALIDGLCKVHKVREAHDLLDAMSVVGC-------EPNNIVYDALIDGFCKVGK-LDEAQMVFSKMLEHGCNPNV--YTY 712 (997)
Q Consensus 643 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~--~~~ 712 (997)
..+.-++...|..+++.+++.......- .+....-.++.-++.-.|. -+++.+.+..++...- +.. ..-
T Consensus 415 AllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~Aa 493 (963)
T 4ady_A 415 SLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAA 493 (963)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 3344456666766677777776654321 0111112233333333342 2455666666555321 111 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH---HHHHH
Q 001911 713 GSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVV-TYT---AMIDG 788 (997)
Q Consensus 713 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~---~li~~ 788 (997)
.++...+...|+.+....++..+.+.. ..+..-.-.+.-++...|+.+.+..+.+.+... .++. -|. ++.-+
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglA 569 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALA 569 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHH
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 233334556677777777777766542 122222333334444678888888777777753 1322 222 23345
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLE 838 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 838 (997)
|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+..+++
T Consensus 570 yaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 570 YAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp TTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 667778766666887777641 1122222233333444555544444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.71 E-value=1 Score=41.45 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--H--
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS--T-- 956 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-- 956 (997)
+...|..|++....+|+++-|++.|++.... ..+...|...|+.+.-.++.+.+..+|- -+.. .
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------~~L~~Ly~~tg~~e~L~kla~iA~~~g~-~n~af~~~l 100 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHSF-----------DKLSFLYLVTGDVNKLSKMQNIAQTRED-FGSMLLNTF 100 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------HHHHHHHHHHTCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------HHHHHHHHHhCCHHHHHHHHHHHHHCcc-HHHHHHHHH
Confidence 3567999999999999999999999988753 3345556667877766666555555431 1110 0
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHH
Q 001911 957 ----FVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 957 ----~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
+..-++.|.+.|++.+|.-+.+
T Consensus 101 ~lGdv~~~i~lL~~~~r~~eA~~~A~ 126 (177)
T 3mkq_B 101 YNNSTKERSSIFAEGGSLPLAYAVAK 126 (177)
T ss_dssp HHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHCCChHHHHHHHH
Confidence 1123445556666666655543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.55 E-value=1.9 Score=36.95 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=87.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 001911 650 CKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLAL 729 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 729 (997)
.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+. .|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3457778888888777653 34555666665555555555555555554332 122 2344444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 730 KVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
..+-.+- .+.......++.+..+|+-++-.++...+.. +.+|++...-.+..+|.+.|+..+|.+++.+..++|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4443321 2344555666777788888888888877533 246677777788888888888888888888888877
Q ss_pred CC
Q 001911 810 CA 811 (997)
Q Consensus 810 ~~ 811 (997)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 53
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.27 E-value=17 Score=43.10 Aligned_cols=258 Identities=10% Similarity=0.064 Sum_probs=114.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 001911 493 LCDASEAEKAFLLFQEMKRNGLIPDV--YTYTILIDNFCKAGLIEQARNWFDEMVKEGC-------DPNVVTYTALIHAY 563 (997)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~ll~~~ 563 (997)
....|+.++++.++......+...+. ..-..+.-+....|..+++..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44556666666666554432101122 2233333444455555566666666554311 00111122222233
Q ss_pred HhcCC-hhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCce
Q 001911 564 LKARK-PSQANELFETMLSKGCIPNIVTFT--ALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVY 640 (997)
Q Consensus 564 ~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (997)
+-.|. -+++.+.+..++... .+...... ++.-.++..|+-+....++..+.+.. ..+..
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-----------------~e~vr 525 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-----------------HGNIT 525 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-----------------CHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-----------------cHHHH
Confidence 32332 234555555555432 11111111 22233445566666666666554321 11111
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYD---ALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLID 717 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 717 (997)
-...+.-++...|+.+.+..+++.+.... .|. .-|. ++.-+|+..|+......++..+.+.. ..++.....+.-
T Consensus 526 R~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaL 602 (963)
T 4ady_A 526 RGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIAL 602 (963)
T ss_dssp HHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHH
Confidence 11222223445677777777777666531 121 1222 23345666677666666777766542 112222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 001911 718 RLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT-EEAYKVMLMMEE 772 (997)
Q Consensus 718 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 772 (997)
++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|+. .+|.+++..+..
T Consensus 603 GlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 603 GFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 3334555555555655555433 34444444444444444443 456667776654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.00052 Score=72.66 Aligned_cols=264 Identities=19% Similarity=0.195 Sum_probs=142.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 001911 270 GFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLR 349 (997)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (997)
+.+|+-+..++...|++.+|++-|-+ ..|...|..+|....+.|++++-+.++...++..-.|.. =+.|+-+|++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHh
Confidence 34556666666666666666655544 234455666777777777777777776655544322322 2456666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHH
Q 001911 350 KRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVF 429 (997)
Q Consensus 350 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~ 429 (997)
.+++.+-++++ -.||..-...+.+-|...|.++.|.-+|..+.
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is------------------------------ 171 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------------------------------ 171 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------------------------------
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc------------------------------
Confidence 66655433222 13455455556666666666666666554432
Q ss_pred HHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 430 ELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEM 509 (997)
Q Consensus 430 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 509 (997)
.+..+..++.+.|++..|.+.-++ .-++.||-.+-.+|...+++..|.-.--.+
T Consensus 172 --------------------N~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLni 225 (624)
T 3lvg_A 172 --------------------NFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHI 225 (624)
T ss_dssp --------------------CCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchh
Confidence 223334445566666666553322 134567777777777777766665443333
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--
Q 001911 510 KRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPN-- 587 (997)
Q Consensus 510 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-- 587 (997)
+-.. | -...++.-|-..|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+-++..-.+=-.|.
T Consensus 226 Ivha---d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 226 VVHA---D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp HCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred cccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 3221 1 12235566667777777777777765321 23566777777777665 33433333332211100121
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHH
Q 001911 588 -----IVTFTALIDGHCKAGDIERAC 608 (997)
Q Consensus 588 -----~~~~~~li~~~~~~g~~~~A~ 608 (997)
...|.-++-.|++-.+++.|.
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 122455555566666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.59 E-value=1.1 Score=38.39 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=57.5
Q ss_pred CChhhHHHHHHHHHhcCCHHH---HHHHHHHHhcCC-CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAGRLEV---ALELHEEMTSFS-SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
|+..+-..++.++.+..+..+ ++.+++...... | .........|+-++.+.|+|++|.++.+.+++ ..|+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCC
Confidence 666777779999999887776 889999887754 2 12567777889999999999999999999999 7795
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.13 E-value=1.1 Score=52.08 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 929 LSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
|...|+++-|+++.++++. ..|+ ..+|..|+.+|...|+|+.|+-.++++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456888889998888888 6784 888999999999999999998888877
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=21 Score=40.55 Aligned_cols=84 Identities=10% Similarity=-0.004 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE------LST 956 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~ 956 (997)
...+.++.++...|+.++|..+|+++.... ..|..++.. +.|..-. .. ... ..+. ...
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~-------~fYg~lAa~--~Lg~~~~-~~----~~~--~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQLMQQR-------GFYPMVAAQ--RIGEEYE-LK----IDK--APQNVDSALTQGP 383 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------SHHHHHHHH--HTTCCCC-CC----CCC--CCSCCCCHHHHSH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-------ChHHHHHHH--HcCCCCC-CC----CCC--CChhHHhhhccCh
Confidence 345678888888888888888888887521 123333221 2221000 00 000 1111 012
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
....+..+...|...+|...+..+..
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 34556778889999999888877654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.61 E-value=0.00082 Score=71.21 Aligned_cols=223 Identities=11% Similarity=0.111 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 001911 166 PVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVF 245 (997)
Q Consensus 166 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 245 (997)
.+|..|.++....+...+|.+.+ ++..++. .|..+|....+.|.+++-+..+...++..-.|. .=+.|+.+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps----~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPS----SYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCC----SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHH
Confidence 34555555554444444443222 1222222 144555555555555555555544443322222 223455555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 001911 246 LRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLL 325 (997)
Q Consensus 246 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 325 (997)
++.+++.+-..+. -.||..-...+.+-|...|.++.|.-+|.. +..|..|...+.+.|++++|.+.-
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~------isN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN------VSNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG------SCCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544322211 124444444444445555555555444433 223444555555666666655433
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 326 NRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQP 405 (997)
Q Consensus 326 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (997)
.+ --+..||-.+-.+|...+++.-|...--.++-.. .-...++..|-..|-+++-+.+++.-.... ..
T Consensus 194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-rA 261 (624)
T 3lvg_A 194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE-RA 261 (624)
T ss_dssp TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TC
T ss_pred Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-ch
Confidence 22 2356788888888988888877765444443321 112345667888888888888888766321 24
Q ss_pred CHHHHHHHHHhhhcCC
Q 001911 406 GYVVYNILIGGICGNE 421 (997)
Q Consensus 406 ~~~~~~~li~~~~~~~ 421 (997)
....++-|--.|++..
T Consensus 262 HmGmFTELaILYsKY~ 277 (624)
T 3lvg_A 262 HMGMFTELAILYSKFK 277 (624)
T ss_dssp CHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHhcC
Confidence 5556665555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.40 E-value=8.4 Score=42.04 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=103.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 782 YTAMIDGFGKVGKVDKCLELLRQMSS--KGCAPN---FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 782 ~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
...|...+...|++.+|.+++.++.. .|..+. ...+..-++.|...+++..|..+++++.....
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~----------- 208 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF----------- 208 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc-----------
Confidence 34577788888999999999988864 333222 45677778889999999999999988743210
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhH----HHHHHHHH
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPIV--PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNST----LLLIESLS 930 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~ 930 (997)
.....|.. ..+...+..+...+++.+|.+.|.++...+. ...+...+ ..++.+..
T Consensus 209 ------------------~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~-~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 209 ------------------KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA-IKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp ------------------HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHH
T ss_pred ------------------ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc-ccCCHHHHHHHHHHHHHHHH
Confidence 00111221 2455677888889999999988888765321 11122211 11111112
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhccCCc
Q 001911 931 LARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRV--NKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 931 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~--g~~~eA~~~~~~~~~~~~~ 986 (997)
..+..++-..+..+.......++...+..|.++|... .+|+...+.++..+..+..
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 2221111112223333322234566788888888764 4688887777765554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.37 E-value=1.1 Score=40.49 Aligned_cols=128 Identities=11% Similarity=0.032 Sum_probs=76.4
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh--h
Q 001911 808 KGCAPN--FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV--P 883 (997)
Q Consensus 808 ~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~ 883 (997)
.|+.|. ..++..-+..+...|.++.|+.+.+.+.... +-.+.-..|.. .
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~---------------------------~~~~~~~sp~~~~~ 64 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLS---------------------------NNNPELFSPPQKYQ 64 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------------HHSTTSSCHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh---------------------------cCCcccccHHHHHH
Confidence 355563 3345555677778889998888877654310 00000111221 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC------CCC----------------CCcchhhHHHHHHHHHhcCCHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSF------SSN----------------SAASRNSTLLLIESLSLARKIDKAFEL 941 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 941 (997)
++..+++++...|++..|...|+++++. .+. ...+...-..++.+|.+.+++++|+..
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5667889999999999999999997542 110 011223445688889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH
Q 001911 942 YVDMIRKDGSPELSTFVHLIKGL 964 (997)
Q Consensus 942 ~~~~~~~~~~p~~~~~~~l~~~y 964 (997)
++.+..+.- .+.+-..|++.|
T Consensus 145 Le~Ip~k~R--t~kvnm~LakLy 165 (167)
T 3ffl_A 145 LDGIPSRQR--TPKINMLLANLY 165 (167)
T ss_dssp HHTSCGGGC--CHHHHHHHHHHC
T ss_pred HhcCCchhc--CHHHHHHHHHHh
Confidence 887544222 355566677665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=6 Score=42.29 Aligned_cols=77 Identities=16% Similarity=0.040 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR-----KDGSPELSTFVH 959 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 959 (997)
...++..+...|++++|+..++.+....|. +...|..++.++...|+..+|++.|+++.+ .|+.|.+..-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 455778888999999999999999988875 888999999999999999999999999754 589998765444
Q ss_pred HHHHH
Q 001911 960 LIKGL 964 (997)
Q Consensus 960 l~~~y 964 (997)
.-.++
T Consensus 251 ~~~il 255 (388)
T 2ff4_A 251 NERIL 255 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.0082 Score=57.72 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=47.1
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSA 85 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (997)
.-||.||.+.|++|+.+++.-++++|.++|+.....++...||. .|+.+.+++|...+..
T Consensus 86 D~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~---------eER~e~v~~~k~VD~V 145 (236)
T 3hl4_A 86 DLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNE---------NERYDAVQHCRYVDEV 145 (236)
T ss_dssp TTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCH---------HHHHHHHHTBTTCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCH---------HHHHHHHHHhCCCCeE
Confidence 45899999999999999987889999998874332333345666 9999999999865543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.79 E-value=1.8 Score=38.19 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHH-hHHHHHH------HHHhcCCHHHHHHHHHHHHhC
Q 001911 672 PNNIVYDALIDGFCKVGKL------DEAQMVFSKMLEHGCNPNVY-TYGSLID------RLFKDKRLDLALKVISKMLED 738 (997)
Q Consensus 672 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~~~~~ 738 (997)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455555555555555555 5566666666554 233221 1111110 012336667777777776554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 739 SYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP 777 (997)
Q Consensus 739 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 777 (997)
+ +.-...|-....--.++|++..|.+++.+.+..+.+|
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 2225555555555666777777777777777766554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.34 E-value=13 Score=40.56 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS---RNSTLLLIESLSLARKIDKAFELYVDMIR----KDGSPE--LS 955 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~ 955 (997)
...|+..|...|++.+|.++++.+.....+..+. ...+...+..|...+++.+|...++++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3568899999999999999999986432222222 35666778888889999999999998742 212233 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+...+..+...++|.+|-..|..+..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 567888999999999999988876643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.16 E-value=5.3 Score=46.39 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
..-++.+...|+++-|+++.+++....|. +-.+|..|+.+|...|+++.|+-.+..+
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs---eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALD---SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCch---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33446677789999999999999988765 8999999999999999999999988887
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.99 E-value=10 Score=32.61 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHG 704 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 704 (997)
++...-.+..+|.+.|+..+|.+++.++.+.|
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333333444444444444444444444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.95 E-value=5 Score=35.39 Aligned_cols=111 Identities=11% Similarity=0.040 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHccCCh------HHHHHHHHHHHhCCCCCcHH----hHHHHHH---HHHhcCChhHHHHHHHHHHHC
Q 001911 300 PDTVLYTKMISGLCEASLF------EEAMDLLNRMRARSCIPNVV----TFRILLC---GCLRKRQLGRCKRVLSMMITE 366 (997)
Q Consensus 300 p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----t~~~ll~---~~~~~g~~~~a~~~~~~m~~~ 366 (997)
.|..+|-..+.-+-+.|++ ++.+++|++.... ++|+.. .|.-+.- .+...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566666666666666777 7777788777653 355431 1211111 112347999999999999775
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 367 GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNI 412 (997)
Q Consensus 367 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 412 (997)
+-.- ..+|....+.-.+.|++..|++++...+..+..|....-.+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 2222 66777777777899999999999999999887665544333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.89 E-value=25 Score=35.72 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=67.4
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHH-HHHHHHHHH----HHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 471 IREMMSKGFIPDTSTYSKVIGYLCDASEAE-KAFLLFQEM----KRNG--LIPDVYTYTILIDNFCKAGLIEQARNWFDE 543 (997)
Q Consensus 471 l~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 543 (997)
++...+.+.+++......++..+.....-+ .=.++.+.+ .+.| ...++.....+...|.+.|++.+|...|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 344444555555555555555443322111 112222222 2332 234788899999999999999998887641
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 544 MVKEGCDPNVVTYTALIHAYLKA---RKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 544 m~~~g~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
|-.-+...+..++.-+... |...++--.. -.. +-.|...++...|..+|+....
T Consensus 160 ----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~Ra-VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 ----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRL-VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred ----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 1111344555555544443 4333322111 111 2235567888888888887654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=43 Score=38.03 Aligned_cols=122 Identities=9% Similarity=0.033 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001911 486 YSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLK 565 (997)
Q Consensus 486 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 565 (997)
|.....+ .+.|+...+..+...+...-+. .-..|..|...+ ......+....+++.... +.....-+.-+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHh
Confidence 4434433 3557777766665555322111 122333332222 122455554444443211 1111222344555666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001911 566 ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGN 617 (997)
Q Consensus 566 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 617 (997)
.+++......+.. .+.+...-.....+....|+..+|......+-..
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 7777666554332 1334444455666677778877776666665443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.28 E-value=4.2 Score=35.03 Aligned_cols=71 Identities=7% Similarity=0.005 Sum_probs=56.7
Q ss_pred CCChhhHHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 879 VPIVPAYRILIDHYIKAGRL---EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 879 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.|+..+-...++++.+..+. .+++.+++......|. .....+..|+-++.+.|+|++|.++.+.+++ ..|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 46666666788888887654 5688888888765431 3577788899999999999999999999999 7896
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.84 E-value=7.9 Score=33.85 Aligned_cols=71 Identities=7% Similarity=-0.017 Sum_probs=57.3
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 879 VPIVPAYRILIDHYIKAGR---LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 879 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.|+..+-...++++.+..+ ..+++.+++......|. ........|+-++.+.|+|++|.++.+.+++ ..|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 4666777778888888875 45688888888775542 3667777889999999999999999999999 7896
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.90 E-value=11 Score=30.22 Aligned_cols=85 Identities=20% Similarity=0.115 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 001911 250 RLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMR 329 (997)
Q Consensus 250 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (997)
..++|..+-+-+...|. ...+--+-+..+...|++++|..+.+... .||...|-+|-.+ +.|-.+++...+.++.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 35666666666655442 33333344556667778888877777654 7777777776544 4566666666666666
Q ss_pred hCCCCCcHHhH
Q 001911 330 ARSCIPNVVTF 340 (997)
Q Consensus 330 ~~~~~p~~~t~ 340 (997)
..| .|...+|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 4444333
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.77 E-value=15 Score=38.96 Aligned_cols=94 Identities=13% Similarity=-0.013 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH----HHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRK--DGSPEL----STF 957 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~ 957 (997)
-|+..|...|++.+|.++++++.+..... ..-..++..-+..|...+++.++.+.|.++... .+.|++ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 58899999999999999999987642221 112344555566777889999999999888642 232443 244
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHh
Q 001911 958 VHLIKGLI-RVNKWEEALQLSYSI 980 (997)
Q Consensus 958 ~~l~~~y~-~~g~~~eA~~~~~~~ 980 (997)
..-|..+. ..++|.+|...|-..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 45667777 799999998887554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.70 E-value=23 Score=34.89 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=41.1
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 787 DGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 787 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
..+.+.|++++|++....-++. .| |...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456778888888887777776 45 6777777888888888888888888776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.81 E-value=9 Score=40.91 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS-----KGCAPNFVTYRV 819 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~~ 819 (997)
...++..+...|+.++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4456677778888888888888887653 33777888888889999999999888888654 388888765443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.57 E-value=11 Score=30.24 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 001911 250 RLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMR 329 (997)
Q Consensus 250 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (997)
..++|..+-+-+...|. ...+--+-+..+...|++++|..+.+... .||...|-+|-.+ +.|-.+++...+.++.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 35566666665555442 33333334455666777777777766654 6777777666543 5566666666666666
Q ss_pred hCCCCCcHHhH
Q 001911 330 ARSCIPNVVTF 340 (997)
Q Consensus 330 ~~~~~p~~~t~ 340 (997)
..| .|...+|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 4443333
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.55 E-value=4.3 Score=39.96 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELY 942 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 942 (997)
...++..+....... +.|...-..|...+|-.|+|+.|..-++.+.+..|...+-...|..++. |+..-
T Consensus 13 L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~----------aE~~R 81 (273)
T 1zbp_A 13 LQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK----------AAQAR 81 (273)
T ss_dssp HHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH----------HHHHH
Confidence 445555444444332 2234445567788888888888888888888776542222333333332 33344
Q ss_pred HHHHHcCCCCC-----HHHHHHHHHHHH--hcCCHHHHHHHHHHhhcc
Q 001911 943 VDMIRKDGSPE-----LSTFVHLIKGLI--RVNKWEEALQLSYSICHT 983 (997)
Q Consensus 943 ~~~~~~~~~p~-----~~~~~~l~~~y~--~~g~~~eA~~~~~~~~~~ 983 (997)
+++...+-.|. ......|..++. ..|+.++|..+.+.+.+.
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 45555555552 233334555444 459999999999888554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.19 E-value=56 Score=33.46 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 514 LIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTA 593 (997)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 593 (997)
...|+.....+...|.+.+++.+|...|- .|-.++...+..++.-+...+...++ +...-..
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRa 193 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARA 193 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHH
Confidence 34578888899999999999999988772 23333446665555555444332222 1122222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 001911 594 LIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 594 li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
+-.|...+++..|..+++...+
T Consensus 194 -VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 -VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCHHHHHHHHHHHHH
Confidence 2345667888888887776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 997 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 3e-05
Identities = 47/341 (13%), Positives = 99/341 (29%), Gaps = 20/341 (5%)
Query: 277 AYSLCKAGRWKEALELIEK--EEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCI 334
A+ +AG ++ A + + +T + + S + + + A
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQN 63
Query: 335 PNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKL 394
P + L ++R + + +L A +GD A +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 395 LSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNF 454
+ V ++ A + A + A SN
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA--------WSNL 175
Query: 455 VQCLCGAGKYEKAYNVIREM--MSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRN 512
G+ A + + + F+ V+ A A+L + N
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Query: 513 GLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQA 572
+ L + + GLI+ A + + ++ Y L +A + ++A
Sbjct: 236 ----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEA 290
Query: 573 NELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYAR 613
+ + T L L + + G+IE A R+Y +
Sbjct: 291 EDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYRK 330
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 997 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.17 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.89 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.57 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.47 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.27 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.17 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.14 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.12 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.97 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.97 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.82 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.82 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.82 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.75 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.65 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.27 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.99 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.21 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.19 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.96 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.14 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.48 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 85.59 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=8.5e-22 Score=216.78 Aligned_cols=382 Identities=16% Similarity=0.112 Sum_probs=294.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001911 524 LIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGD 603 (997)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 603 (997)
+...+.+.|++++|++.++++.+..+. +...+..+...+.+.|++++|...|++.++.. +-+..++..+...+...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 344556677777777777777665432 56666677777777777777777777776653 3455667777777777777
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 001911 604 IERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDG 683 (997)
Q Consensus 604 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 683 (997)
+++|...+....... +.+..............+....+........... .............
T Consensus 83 ~~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 144 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-----------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred ccccccccccccccc-----------------cccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 777777777776543 3333444444445555566666666655555444 3344445555666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 684 FCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEA 763 (997)
Q Consensus 684 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 763 (997)
....+....+...+.......+. +...+..+...+...|++++|...+++.++.. +.+...+..+...+...|++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A 222 (388)
T d1w3ba_ 145 LKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred ccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHH
Confidence 67778888888888887776543 56677778888888999999999998887753 34567888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 764 YKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 764 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
...+++....+. .+...+..+...+.+.|++++|++.|++..+. .| +..++..+..++...|++++|...++....
T Consensus 223 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 299 (388)
T d1w3ba_ 223 VAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc
Confidence 999999887643 36778888889999999999999999999886 46 578899999999999999999999988765
Q ss_pred cCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhH
Q 001911 843 TYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNST 922 (997)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 922 (997)
.. +.+...+..++.++...|++++|++.++++.+..|+ +..++
T Consensus 300 ~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 342 (388)
T d1w3ba_ 300 LC----------------------------------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAH 342 (388)
T ss_dssp HC----------------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred cC----------------------------------CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHH
Confidence 43 334557788999999999999999999999998876 78899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 923 LLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
..++.++...|++++|+..|+++++ +.|+ ..++..|+.+|.+.|+
T Consensus 343 ~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 343 SNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999 7896 8899999999999885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.1e-20 Score=205.44 Aligned_cols=380 Identities=16% Similarity=0.087 Sum_probs=259.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 001911 492 YLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQ 571 (997)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 571 (997)
.+.+.|++++|.+.++++.+..+ -+..++..+...|.+.|++++|+..|+++.+..+. +..+|..+...|.+.|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccccc
Confidence 34455666666666666555432 14555566666666666666666666666655332 45556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHh
Q 001911 572 ANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCK 651 (997)
Q Consensus 572 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 651 (997)
|+..+....... +.+..............+....+........... ................
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 147 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-----------------PDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-----------------TTCTHHHHHHHHHHHT
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccc-----------------cccccccccccccccc
Confidence 666666665543 2333333333444444444444444443333221 3333344445555566
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 001911 652 VHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKV 731 (997)
Q Consensus 652 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 731 (997)
.+....+...+....... +.+...+..+...+...|++++|...+++..+..+. +..++..+...+...|++++|...
T Consensus 148 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~ 225 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHH
Confidence 667777777776666554 445666777777788888888888888887776543 566777778888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 001911 732 ISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA 811 (997)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 811 (997)
+++..... +.+...+..+...+.+.|++++|...|+++.+.... +..++..+...+...|++++|++.++...... +
T Consensus 226 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 302 (388)
T d1w3ba_ 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-P 302 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-T
T ss_pred HHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-C
Confidence 88877654 345667777888888888888888888888876332 57778888888888899999999888887752 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHH
Q 001911 812 PNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILID 890 (997)
Q Consensus 812 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 890 (997)
.+...+..+..++...|++++|+..+++..+.. |+ ..++..++.
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----------------------------------p~~~~~~~~la~ 347 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-----------------------------------PEFAAAHSNLAS 347 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-----------------------------------TTCHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHH
Confidence 467788888888999999999999988876542 43 456778889
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
+|.+.|++++|++.|+++.+..|+ +..+|..++.+|.+.||
T Consensus 348 ~~~~~g~~~~A~~~~~~al~l~P~---~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 348 VLQQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCC
Confidence 999999999999999999888776 77888888888887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.5e-13 Score=142.86 Aligned_cols=272 Identities=11% Similarity=-0.064 Sum_probs=193.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 001911 644 ALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK 723 (997)
Q Consensus 644 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 723 (997)
.....+.+.|++++|...|+++++.. +.+..+|..+..+|...|++++|...|.++.+..+. +...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 45556778888888888888888765 456778888888888888888888888888877544 5677777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
++++|.+.++++.... |+............. ..+.......+..+...+.+++|.+.+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 8888888888877642 222111000000000 0001111112223345566778888888
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh
Q 001911 804 QMSSKGC-APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV 882 (997)
Q Consensus 804 ~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 882 (997)
+...... .++..++..+...+...|++++|...+++..... +.+.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~ 206 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR----------------------------------PNDY 206 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc----------------------------------cccc
Confidence 8776421 2357788888999999999999999998876532 1235
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE--------- 953 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------- 953 (997)
..|..++.+|...|++++|++.|+++.+..|+ +..+|..++.+|...|++++|+..|+++++ +.|+
T Consensus 207 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~ 281 (323)
T d1fcha_ 207 LLWNKLGATLANGNQSEEAVAAYRRALELQPG---YIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRGEGG 281 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC------CC
T ss_pred cchhhhhhcccccccchhHHHHHHHHHHHhhc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCcChhhhhhhH
Confidence 57888999999999999999999999988776 788899999999999999999999999988 4443
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 954 ---LSTFVHLIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 954 ---~~~~~~l~~~y~~~g~~~eA~~~~ 977 (997)
..+|..+..++...|+.+.+...-
T Consensus 282 ~~~~~~~~~l~~al~~~~~~d~~~~~~ 308 (323)
T d1fcha_ 282 AMSENIWSTLRLALSMLGQSDAYGAAD 308 (323)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 135667788888888877665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.2e-13 Score=146.70 Aligned_cols=227 Identities=13% Similarity=0.058 Sum_probs=150.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKV 795 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 795 (997)
...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|...|.++.+.... +...+..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 344555566666666666655542 233455555556666666666666666655554222 445555555556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhH
Q 001911 796 DKCLELLRQMSSKGCAPNFVT----------------YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGF 859 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~p~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 859 (997)
++|++.+++.... .|+... ....+..+...+.+.+|...+.+....
T Consensus 104 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~---------------- 165 (323)
T d1fcha_ 104 RQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL---------------- 165 (323)
T ss_dssp HHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred cccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH----------------
Confidence 6666666655543 221100 011111222333444444444443321
Q ss_pred hHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 001911 860 SREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAF 939 (997)
Q Consensus 860 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 939 (997)
.+ ..++...+..++..+...|++++|+..++++....|. +..+|..++.++...|++++|+
T Consensus 166 --------------~p--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 166 --------------DP--TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---DYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp --------------ST--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------hh--cccccccchhhHHHHHHHHHHhhhhcccccccccccc---cccchhhhhhcccccccchhHH
Confidence 11 1234557788999999999999999999999988775 7889999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 940 ELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 940 ~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
+.|+++++ ..|+ ..++..++.+|.+.|++++|+..+++.++.
T Consensus 227 ~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 227 AAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999 6786 889999999999999999999999998764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=5.3e-10 Score=116.48 Aligned_cols=211 Identities=14% Similarity=0.076 Sum_probs=125.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 001911 712 YGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG-KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790 (997)
Q Consensus 712 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 790 (997)
++.+...+.+.+..++|+++++++++.. +-+...|+....++...| ++++|+..+++..+.... +..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 3344444555556666666666665543 334455666666655554 366666666666655333 5666666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 791 KVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 791 ~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
+.|++++|++.++++++. .| +...|..+..++...|++++|+..++++.+..
T Consensus 124 ~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~------------------------- 176 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------------------------- 176 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------------------------
T ss_pred hhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-------------------------
Confidence 667777777777776664 34 46666667777777777777777776665542
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 870 VNEMGKTDSVPIVPAYRILIDHYIKAGR------LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 870 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
+.+..+|+.++.++.+.+. +++|++.++++++..|. +...|..++..+...| .+++.+.++
T Consensus 177 ---------p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~---~~~~~~~l~~ll~~~~-~~~~~~~~~ 243 (315)
T d2h6fa1 177 ---------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH---NESAWNYLKGILQDRG-LSKYPNLLN 243 (315)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTTTC-GGGCHHHHH
T ss_pred ---------CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC---chHHHHHHHHHHHhcC-hHHHHHHHH
Confidence 1233455555555554443 56777777777776665 6667776666554433 466666666
Q ss_pred HHHHcCCCCC---HHHHHHHHHHHHh
Q 001911 944 DMIRKDGSPE---LSTFVHLIKGLIR 966 (997)
Q Consensus 944 ~~~~~~~~p~---~~~~~~l~~~y~~ 966 (997)
++.+ +.|+ ...+..++.+|..
T Consensus 244 ~~~~--l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 244 QLLD--LQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHH--HTTTCCCHHHHHHHHHHHHH
T ss_pred HHHH--hCCCcCCHHHHHHHHHHHHH
Confidence 6666 3342 4455566666654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.1e-09 Score=113.39 Aligned_cols=274 Identities=11% Similarity=-0.020 Sum_probs=188.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 001911 681 IDGFCKVGKLDEAQMVFSKMLEHGCNPN----VYTYGSLIDRLFKDKRLDLALKVISKMLED----SYAP-NVVIYTEMI 751 (997)
Q Consensus 681 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li 751 (997)
...+...|++++|+.++++.++..+..+ ..++..+...+...|++++|...+++..+. +..+ ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4456677788888888877776543322 235556677777888888888888776542 1111 123455666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCC--C-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC----CCCCHHHHHHH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEK----GCYP--N-VVTYTAMIDGFGKVGKVDKCLELLRQMSSKG----CAPNFVTYRVL 820 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~----g~~p--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~~~~~l 820 (997)
..+...|++..|...+.+.... +..+ . ...+..+...+...|+++.+...+....... .......+..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 7788889999888888776542 1111 1 2345566777888999999999998887632 11235566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 899 (997)
...+...|...++...+.+......... ...+. ...+..++..+...|+++
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGK----------------------------YHSDWISNANKVRVIYWQMTGDKA 230 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSC----------------------------CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhc----------------------------ccCchHHHHHHHHHHHHHhcccHH
Confidence 7788888999999888877644210000 00111 224566778889999999
Q ss_pred HHHHHHHHHhcCCCCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 001911 900 VALELHEEMTSFSSNS-AASRNSTLLLIESLSLARKIDKAFELYVDMIR----KDGSPE-LSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~y~~~g~~~eA 973 (997)
+|...+++.....+.. ......+..++.++...|++++|...+++++. .+..|+ ..++..++.+|.+.|++++|
T Consensus 231 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 231 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999988765432 22345566788899999999999999998874 234454 56889999999999999999
Q ss_pred HHHHHHhhc
Q 001911 974 LQLSYSICH 982 (997)
Q Consensus 974 ~~~~~~~~~ 982 (997)
.+.+++.+.
T Consensus 311 ~~~l~~Al~ 319 (366)
T d1hz4a_ 311 QRVLLDALK 319 (366)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988755
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=1e-10 Score=123.92 Aligned_cols=265 Identities=7% Similarity=-0.039 Sum_probs=142.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 001911 654 KVREAHDLLDAMSVVGCEPNNIVYDALIDGFC----------KVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK 723 (997)
Q Consensus 654 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 723 (997)
..++|+++++..+... |-+...|+..-..+. ..|.+++|+.+++...+..++ +...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhc
Confidence 3466666666666543 223333433222211 122344555555555554332 3344444444443332
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 001911 724 --RLDLALKVISKMLEDSYAPNVVIYT-EMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLE 800 (997)
Q Consensus 724 --~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 800 (997)
++++|+..++++.+.. +++...+. .....+...|+.++|+..++++.+..+. +...|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 2455555555554432 12233222 2233444445555555555555444322 44445555555555555544443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 801 LLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 801 l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
.+++.... .|+. ......+...+..+++...+....... ++
T Consensus 200 ~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~----------------------------------~~ 240 (334)
T d1dcea1 200 QGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR----------------------------------AE 240 (334)
T ss_dssp CCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC----------------------------------CC
T ss_pred HHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC----------------------------------cc
Confidence 33322221 1110 111122223333344443333332211 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 959 (997)
....+..++..+...|+.++|++.+.+.....|. +..++..++.++...|++++|+..|+++++ +.|+ ...|..
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~ 315 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKW---CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDD 315 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHH
Confidence 3334566778888899999999999999987764 788999999999999999999999999999 7896 667778
Q ss_pred HHHHHHh
Q 001911 960 LIKGLIR 966 (997)
Q Consensus 960 l~~~y~~ 966 (997)
|+..+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8777764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.2e-08 Score=108.73 Aligned_cols=304 Identities=14% Similarity=0.037 Sum_probs=215.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHH
Q 001911 643 GALIDGLCKVHKVREAHDLLDAMSVVGCEPN----NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN-PN----VYTYG 713 (997)
Q Consensus 643 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~ 713 (997)
......+...|++++|.+++++........+ ..++..+...|...|++++|...+++..+.... ++ ...+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345567889999999999999887642222 346777889999999999999999998764211 11 23456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 001911 714 SLIDRLFKDKRLDLALKVISKMLED----SYAP---NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK----GCYPNVVTY 782 (997)
Q Consensus 714 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~ 782 (997)
.+...+...|++..+...+...... .... ....+..+...+...|+++.|...+...... +.......+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 6677888999999999999886532 1111 1235666778899999999999999988764 222334566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 783 TAMIDGFGKVGKVDKCLELLRQMSSK--GCAP----NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 783 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
..+...+...|+..++...+.+.... .... ....+..+...+...|++++|...+++........
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 246 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN--------- 246 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT---------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc---------
Confidence 66777788899999999988876542 1111 13456667778889999999999998765432110
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCcchhhHHHHHHHHHhcC
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFS---SNSAASRNSTLLLIESLSLAR 933 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g 933 (997)
.......+..++..|...|++++|.+.++++.... +.......++..++.+|...|
T Consensus 247 ---------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 247 ---------------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp ---------------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 01122356678899999999999999999986421 111234567888999999999
Q ss_pred CHHHHHHHHHHHHHc----CCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 934 KIDKAFELYVDMIRK----DGSP----ELSTFVHLIKGLIRVNKWEEALQL 976 (997)
Q Consensus 934 ~~~~A~~~~~~~~~~----~~~p----~~~~~~~l~~~y~~~g~~~eA~~~ 976 (997)
++++|.+.++++++. |... ....+..+...+...|+.+++...
T Consensus 306 ~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 999999999998763 2111 123455666777778888877654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1e-09 Score=114.18 Aligned_cols=200 Identities=10% Similarity=0.016 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG-KVDKCLELLRQMSSKGCAP-NFVTYRVLI 821 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p-~~~~~~~l~ 821 (997)
...++.+...+.+.+++++|++.++++++..+. +...|+....++...| ++++|++.+++.++. .| +..+|..+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHh
Confidence 346677778888999999999999999997443 6778888888888776 599999999999886 56 689999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001911 822 NHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 901 (997)
.++.+.|++++|+..++++.+.. +.+..+|..++.++...|++++|
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~d----------------------------------p~n~~a~~~~~~~~~~~~~~~~A 165 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQD----------------------------------AKNYHAWQHRQWVIQEFKLWDNE 165 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHhhccHHHHHHHHhhhhhhh----------------------------------hcchHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999988753 23466899999999999999999
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001911 902 LELHEEMTSFSSNSAASRNSTLLLIESLSLARK------IDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEAL 974 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~ 974 (997)
++.++++++.+|. +..+|..++.++...+. +++|+..+.++++ ..|+ ..+|..++.++...| .+++.
T Consensus 166 l~~~~~al~~~p~---n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~ 239 (315)
T d2h6fa1 166 LQYVDQLLKEDVR---NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYP 239 (315)
T ss_dssp HHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCH
T ss_pred HHHHHHHHHHCCc---cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHH
Confidence 9999999999876 88899988888776554 7899999999999 6785 888999988876555 67888
Q ss_pred HHHHHhhccCCc
Q 001911 975 QLSYSICHTDIN 986 (997)
Q Consensus 975 ~~~~~~~~~~~~ 986 (997)
+.++........
T Consensus 240 ~~~~~~~~l~~~ 251 (315)
T d2h6fa1 240 NLLNQLLDLQPS 251 (315)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 888777654443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=4.4e-10 Score=118.93 Aligned_cols=259 Identities=8% Similarity=-0.069 Sum_probs=191.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH----------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 679 ALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDR----------LFKDKRLDLALKVISKMLEDSYAPNVVIYT 748 (997)
Q Consensus 679 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 748 (997)
.++......+..++|++++++.++..+. +...|+..-.. +...|++++|+.+++...+.. +.+...|.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3333333444568999999999987543 34444432222 233455789999999988764 45677788
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 001911 749 EMIDGLIKVG--KTEEAYKVMLMMEEKGCYPNVVTYTA-MIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHC 824 (997)
Q Consensus 749 ~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~ 824 (997)
.+..++...+ +.++|...+.++.+...+ +...+.. ....+...|.+++|++.++++.+. .| +...|..+..++
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 8877777765 489999999999886333 5555543 446677889999999999999886 45 688899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001911 825 CASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 825 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
...|++++|...+++..... |. .......+...+..++|...
T Consensus 189 ~~~~~~~~A~~~~~~~~~~~-----------------------------------~~---~~~~~~~~~~l~~~~~a~~~ 230 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENVL-----------------------------------LK---ELELVQNAFFTDPNDQSAWF 230 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHHH-----------------------------------HH---HHHHHHHHHHHCSSCSHHHH
T ss_pred HHhcCHHHHHHHHHHhHHhH-----------------------------------HH---HHHHHHHHHHhcchhHHHHH
Confidence 99999988765554432210 11 11233445566778889999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
+.+.....|. +...+..++..+...|++++|...+.+.++ ..|+ ..++..++.+|...|++++|++.++++...
T Consensus 231 ~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 231 YHRWLLGRAE---PLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHSCCC---CSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcc---hhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9998877654 566677778888889999999999999988 6685 789999999999999999999999999887
Q ss_pred CC
Q 001911 984 DI 985 (997)
Q Consensus 984 ~~ 985 (997)
+.
T Consensus 306 dP 307 (334)
T d1dcea1 306 DP 307 (334)
T ss_dssp CG
T ss_pred Cc
Confidence 54
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=3.7e-09 Score=106.98 Aligned_cols=96 Identities=11% Similarity=-0.133 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 001911 711 TYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790 (997)
Q Consensus 711 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 790 (997)
++..+...|.+.|++++|+..|++.++.. +.++.+|+.+..+|.+.|++++|.+.|+++.+.... +..++..+...|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 34444555555555555555555555432 234455555555555555555555555555554222 3444555555555
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 001911 791 KVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 791 ~~g~~~~A~~l~~~m~~~ 808 (997)
..|++++|++.|++.++.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 555555555555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=3.9e-09 Score=106.81 Aligned_cols=150 Identities=11% Similarity=-0.041 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 001911 654 KVREAHDLLDAMSVVGCEP---NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALK 730 (997)
Q Consensus 654 ~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 730 (997)
+.+.++..+++........ ...+|..+...|.+.|++++|+..|++.++..+. +..+|..+..++.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 3445555555555432111 1234555566666666666666666666665443 55566666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 731 VISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
.|+++++.. +.+..++..+..+|...|++++|.+.|++..+... .+......+..++.+.+..+.+..+.....
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 666666543 22345566666666666666666666666665422 133333333333344444444444333333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=1.6e-07 Score=97.27 Aligned_cols=189 Identities=11% Similarity=0.004 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
..++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+++.+.........|..++..+.+.|++++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677777877776544455666777777777888888888888887765433334567777777778888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh
Q 001911 804 QMSSKGCAPNFVTYRVLINH-CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV 882 (997)
Q Consensus 804 ~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 882 (997)
++++.+ +.+...|...+.. +...|+.+.|..+++.+.... +.+.
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~----------------------------------p~~~ 203 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY----------------------------------GDIP 203 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH----------------------------------TTCH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh----------------------------------hhhH
Confidence 877753 2234444444433 334577888888887776532 2234
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-ASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..|...++.+...|+.+.|..+|+++....|..+ .....|...+.--...|+.+.+..+++++.+
T Consensus 204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677777777888888888888888877654321 1234566666555667888888888888776
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=1.8e-07 Score=96.74 Aligned_cols=188 Identities=12% Similarity=0.047 Sum_probs=151.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLL 837 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 837 (997)
+..++|..++++..+...+.+...|..++..+...|++++|..+|++++..........|...+..+.+.|+.++|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45688999999998764555777888888889999999999999999998632223567899999999999999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCC
Q 001911 838 EEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDH-YIKAGRLEVALELHEEMTSFSSNSA 916 (997)
Q Consensus 838 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~ 916 (997)
+++.+.. +.+...|...+.. +...|+.+.|..+|+++....|.
T Consensus 158 ~~al~~~----------------------------------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-- 201 (308)
T d2onda1 158 KKAREDA----------------------------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-- 201 (308)
T ss_dssp HHHHTST----------------------------------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHhC----------------------------------CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh--
Confidence 9987643 1223344444443 34568999999999999988765
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 917 ASRNSTLLLIESLSLARKIDKAFELYVDMIRKD-GSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+...|..++..+...|++++|..+|+++++.. ..|+ ...|...+.--...|+.+.+.++.+++.+
T Consensus 202 -~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 202 -IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp -CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78899999999999999999999999999853 3443 45788888877888999999999998755
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=5.1e-08 Score=83.91 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+...++.+.+.|++++|+..|+++++..|. +...|..++.++...|++++|+..++++++ +.|+ +.+|..++.+
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~~ 80 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAA 80 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chhhhhcccccccccccccccchhhhhHHH--hccchhhHHHHHHHH
Confidence 345788999999999999999999999886 889999999999999999999999999999 6685 8999999999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCc
Q 001911 964 LIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
|...|++++|+..+++.......
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 81 LEFLNRFEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999998876543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=4.7e-08 Score=94.11 Aligned_cols=99 Identities=6% Similarity=-0.053 Sum_probs=91.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
|+...+...++.|.+.|++++|+..|+++++..|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~---~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHH
Confidence 56667788999999999999999999999998876 899999999999999999999999999998 7896 88999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 959 HLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.++.+|...|++++|+..+++++..
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.9e-07 Score=87.11 Aligned_cols=104 Identities=8% Similarity=-0.077 Sum_probs=85.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDG--------- 950 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------- 950 (997)
|+...|..++.+|...|++++|++.|+++++.+|+ +...|..++.++.+.|++++|+..|+++++...
T Consensus 34 ~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~---~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~ 110 (192)
T d1hh8a_ 34 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 110 (192)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh---hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence 55567888999999999999999999999998876 788999999999999999999999999886210
Q ss_pred -----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 951 -----SPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 951 -----~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.++ ..++..++.+|...|++++|.+.++........
T Consensus 111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 111 357788999999999999999999887765443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.65 E-value=4.7e-08 Score=83.30 Aligned_cols=93 Identities=12% Similarity=-0.100 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.+..++..+.+.|++++|+..++++....|. +..+|..++.++...|++++|+..++++++ +.|+ ..++..|+.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~ 92 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAV 92 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccc---cchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHH
Confidence 3456889999999999999999999998876 899999999999999999999999999999 7786 899999999
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 001911 963 GLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~~ 981 (997)
+|...|++++|++.+++.+
T Consensus 93 ~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 93 SHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 9999999999999999753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.9e-07 Score=79.03 Aligned_cols=107 Identities=14% Similarity=0.042 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
.-...+...|++++|+..|++..... +.+...|..++.+|.+.|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~----------------------------------p~~~~~~~~~a~~~~~~~~~ 53 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD----------------------------------PHNHVLYSNRSAAYAKKGDY 53 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC----------------------------------Ccchhhhhcccccccccccc
Confidence 34677889999999999999987643 23455799999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
++|++.++++.+..|+ +...|..++.++...|++++|+..|+++++ ..|+ +.++..+.++.
T Consensus 54 ~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 54 QKAYEDGCKTVDLKPD---WGKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred cccchhhhhHHHhccc---hhhHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHh
Confidence 9999999999998876 889999999999999999999999999999 7786 77777777664
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=6.3e-07 Score=91.61 Aligned_cols=215 Identities=13% Similarity=-0.000 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHH
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK----GCYP-NVVTYTAMIDGFGKVGKVDKC 798 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A 798 (997)
++++|.++|.++ ...|...|++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456666665543 55678889999999998887653 1111 235788888899999999999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 799 LELLRQMSSK----GCAP-NFVTYRVLINHCCA-SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 799 ~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
++.+++..+. |-.. ...++..+...|.. .|++++|...+++..+.. ..
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~--------------------------~~ 150 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--------------------------AQ 150 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--------------------------HH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH--------------------------Hh
Confidence 9999887652 1111 24566677777754 699999999998875421 00
Q ss_pred hccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 873 MGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS----RNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 873 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+..+. ..++..++..|...|++++|++.|+++....+..... ...+...+.++...|+++.|...++++.+
T Consensus 151 ---~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 151 ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred ---cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 011111 2357789999999999999999999998765432111 12345566677788999999999999988
Q ss_pred cCCCCC------HHHHHHHHHHHHh--cCCHHHHHHHHHHhhccC
Q 001911 948 KDGSPE------LSTFVHLIKGLIR--VNKWEEALQLSYSICHTD 984 (997)
Q Consensus 948 ~~~~p~------~~~~~~l~~~y~~--~g~~~eA~~~~~~~~~~~ 984 (997)
..|. ......|+.+|.. .+++++|+..++++...+
T Consensus 228 --~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 228 --EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp --C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred --hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 4553 2345567777665 456999999998876654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=5.7e-07 Score=82.28 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 896 (997)
+......|.+.|++++|...|++..+.. +.+...|..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~----------------------------------p~~~~~~~~lg~~~~~~~ 58 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN----------------------------------PSNAIYYGNRSLAYLRTE 58 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc----------------------------------hhhhhhhhhhHHHHHhcc
Confidence 3344667889999999999999987643 234568889999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH--hcCCHHHH
Q 001911 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLI--RVNKWEEA 973 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~--~~g~~~eA 973 (997)
++++|++.|+++++..|. +..+|..++.++...|++++|+..++++++ +.|+ ..++..+..+.. ..+.+++|
T Consensus 59 ~~~~A~~~~~kal~~~p~---~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~a 133 (159)
T d1a17a_ 59 CYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERA 133 (159)
T ss_dssp CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHccc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 888999999999999999999999999999 6685 777777766643 44456666
Q ss_pred HHH
Q 001911 974 LQL 976 (997)
Q Consensus 974 ~~~ 976 (997)
+..
T Consensus 134 ~~~ 136 (159)
T d1a17a_ 134 IAG 136 (159)
T ss_dssp HHH
T ss_pred HhC
Confidence 644
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.2e-07 Score=85.10 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+...++.|.+.|++++|+..|+++.+..|. +...|..++.++...|++++|+..|+++++ +.|+ ..+|..++.+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh---hhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHH
Confidence 556788999999999999999999999886 899999999999999999999999999999 6786 7899999999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCc
Q 001911 964 LIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
|...|++++|+..+++.......
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999876644
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.53 E-value=7.2e-05 Score=74.61 Aligned_cols=95 Identities=13% Similarity=-0.049 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK----DKRLDLALKVISKMLEDSYAPNVVIYTE 749 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 749 (997)
+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3344455555555666666666666666554 34444444444443 445555655555555543 2222333
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCC
Q 001911 750 MIDGLIK----VGKTEEAYKVMLMMEEKG 774 (997)
Q Consensus 750 li~~~~~----~g~~~~A~~~~~~m~~~g 774 (997)
+...+.. .++.+.|...++...+.|
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccccchhhHHHHHHHhhhhhhh
Confidence 3333322 234555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=1.8e-07 Score=89.87 Aligned_cols=100 Identities=11% Similarity=-0.039 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV 855 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 855 (997)
|+...+......|.+.|++++|+..|++.++. .| +...|..+..+|.+.|++++|+..+++..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l------------ 67 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------------ 67 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh------------
Confidence 56666667777777888888888888777775 57 4667777777788888888888887776653
Q ss_pred HHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 856 IEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 856 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
.|+ ..+|..++.+|...|++++|+..|+++.+..|
T Consensus 68 -----------------------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 68 -----------------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp -----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 243 44677777888888888888888877776544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.9e-06 Score=80.00 Aligned_cols=128 Identities=10% Similarity=-0.076 Sum_probs=91.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHH
Q 001911 786 IDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIV 865 (997)
Q Consensus 786 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (997)
...+...|++++|++.|.++ ..|+..+|..+..+|...|++++|+..|++..+..
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--------------------- 66 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------------- 66 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---------------------
Confidence 34456778888888887754 24677778888888888888888888888776542
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-------------cchhhHHHHHHHHHhc
Q 001911 866 SLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-------------ASRNSTLLLIESLSLA 932 (997)
Q Consensus 866 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~ 932 (997)
+.....|..++.+|.+.|++++|++.|+++....+... ....++..++.++...
T Consensus 67 -------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~ 133 (192)
T d1hh8a_ 67 -------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133 (192)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred -------------hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHC
Confidence 22345777788888888888888888888765422211 1135566788888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCC
Q 001911 933 RKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 933 g~~~~A~~~~~~~~~~~~~p~ 953 (997)
|++++|.+.++++++ ..|+
T Consensus 134 ~~~~~A~~~l~~A~~--~~~~ 152 (192)
T d1hh8a_ 134 EEWKKAEEQLALATS--MKSE 152 (192)
T ss_dssp TCHHHHHHHHHHHHT--TCCS
T ss_pred CCHHHHHHHHHHHHh--cCCC
Confidence 999999999998888 5554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.47 E-value=0.00012 Score=72.79 Aligned_cols=223 Identities=10% Similarity=-0.021 Sum_probs=133.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 709 VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTA 784 (997)
Q Consensus 709 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (997)
+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455666666777788888888888877765 44555556666665 457777777777777654 3333333
Q ss_pred HHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 785 MIDGFG----KVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC----ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 785 li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
+...+. ...+.+.|...+++..+.|.. .....+...+. .......|...+......
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~------------- 139 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------------- 139 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------------
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc-------------
Confidence 433332 245677777777777776421 22222322222 244566666666654432
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh-
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK----AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL- 931 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 931 (997)
.+...+..|+..|.. ..+...+...++...+.. +..+...++..+..
T Consensus 140 -----------------------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g-----~~~A~~~lg~~y~~g 191 (265)
T d1ouva_ 140 -----------------------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHG 191 (265)
T ss_dssp -----------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHT
T ss_pred -----------------------cccchhhhhhhhhccCCCcccccccchhhhhcccccc-----ccccccchhhhcccC
Confidence 233445556665554 456666666666666542 55666666666654
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccC
Q 001911 932 ---ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR----VNKWEEALQLSYSICHTD 984 (997)
Q Consensus 932 ---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~----~g~~~eA~~~~~~~~~~~ 984 (997)
..++++|+..|++..+.| ++.++..|+.+|.. ..++++|.+++++....|
T Consensus 192 ~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 192 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 356777777777777754 45566677777764 235777777777766555
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.7e-07 Score=80.58 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR---KIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
..+++.+...+++++|++.|++++..+|. +..++..+++++.+.+ ++++|+.+++++++.+..|+ ..+++.||
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~---~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 45778888999999999999999998875 8899999999998754 45679999999988442333 45899999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCccch
Q 001911 962 KGLIRVNKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
.+|.+.|++++|++.+++++..+..+.+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~ 107 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQ 107 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence 9999999999999999999998877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=2.3e-06 Score=87.26 Aligned_cols=188 Identities=14% Similarity=0.029 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 001911 759 KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAPN-FVTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 759 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A 833 (997)
++++|.+++.++ ...|...|++++|++.|.+..+. +-.++ ..+|..+..+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456676665554 56688999999999999998762 21222 46889999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhcCC
Q 001911 834 HNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK-AGRLEVALELHEEMTSFS 912 (997)
Q Consensus 834 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 912 (997)
...+++..... .... ........+..++..|.. .|++++|++.++++.+..
T Consensus 97 ~~~~~~a~~~~--------------------------~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~ 148 (290)
T d1qqea_ 97 VDSLENAIQIF--------------------------THRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY 148 (290)
T ss_dssp HHHHHHHHHHH--------------------------HHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHh--------------------------hhcc--cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 99998865421 0000 000112356677777755 699999999999987542
Q ss_pred C---CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 913 S---NSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE--------LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 913 ~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
+ .......++..++..+...|++++|+..|+++.+. .|+ ...+...+.++...|+++.|...+++..
T Consensus 149 ~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS--SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh--CccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11113456788999999999999999999999884 332 1345677888899999999999999999
Q ss_pred ccCCccchhh
Q 001911 982 HTDINWLQEE 991 (997)
Q Consensus 982 ~~~~~~~~~~ 991 (997)
.....|..++
T Consensus 227 ~~~~~~~~sr 236 (290)
T d1qqea_ 227 SEDPNFADSR 236 (290)
T ss_dssp CC--------
T ss_pred HhCCCccchH
Confidence 9888776543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=4.8e-06 Score=76.65 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.|..++.+|.+.|++++|++.+++++..+|. +..++..++.+|...|++++|+..|+++++ +.|+ ..+...+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc---chhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 5677999999999999999999999999886 899999999999999999999999999999 6784 888888888
Q ss_pred HHHhcCCHHHHH
Q 001911 963 GLIRVNKWEEAL 974 (997)
Q Consensus 963 ~y~~~g~~~eA~ 974 (997)
++.+.+...+..
T Consensus 139 ~~~~~~~~~~~e 150 (170)
T d1p5qa1 139 CQQRIRRQLARE 150 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887776665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2e-06 Score=74.92 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------HH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE--------LS 955 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~ 955 (997)
.+..+++.|...|++++|++.|+++++..|. +..++..++.+|...|++++|+..++++++ +.|+ ..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~ 80 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 3567999999999999999999999999876 889999999999999999999999999998 4442 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
++..++.++...+++++|+..+++....
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 7788999999999999999999887653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=3.5e-06 Score=72.16 Aligned_cols=110 Identities=11% Similarity=0.016 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-
Q 001911 818 RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG- 896 (997)
Q Consensus 818 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 896 (997)
..+++.+...+++++|.+.|++..... +.+..++..++.++.+.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~----------------------------------p~~~~~~~n~a~~L~~s~~ 48 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG----------------------------------SVSKSTQFEYAWCLVRTRY 48 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS----------------------------------CCCHHHHHHHHHHHTTSSS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC----------------------------------CCCHHHHHHHHHHHHHhcc
Confidence 457778888899999999999887753 345568888999998755
Q ss_pred --CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 897 --RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 897 --~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
++++|+++++++....|. .....++..++.+|...|++++|++.|+++++ +.|+ ..+...+..+.
T Consensus 49 ~~d~~~Ai~~l~~~l~~~~~-~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 49 NDDIRKGIVLLEELLPKGSK-EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHHHHHHHHHHTTTSCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHHHHH
Confidence 455799999999987643 11234788999999999999999999999999 7796 56665555444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.9e-06 Score=76.62 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSA------------ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS 951 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 951 (997)
.+...++.+.+.|++++|++.|++++...|... ....+|..++.+|.+.|++++|+..++++++ +.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~--~~ 92 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LD 92 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh--cc
Confidence 456788999999999999999999987543221 1235677789999999999999999999999 67
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 952 PE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 952 p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
|+ +.++..++.+|...|++++|+..+++++..+.+
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~ 128 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 128 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 85 899999999999999999999999999887654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=4.7e-06 Score=70.42 Aligned_cols=91 Identities=14% Similarity=-0.024 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcC
Q 001911 818 RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAG 896 (997)
Q Consensus 818 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 896 (997)
..+...+.+.|++++|...+++..... |+ ..+|..++.+|.+.|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------------------p~~~~a~~~lg~~~~~~~ 64 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-----------------------------------PEREEAWRSLGLTQAENE 64 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-----------------------------------cccchhhhhhhhhhhhhh
Confidence 346778889999999999999987653 43 568999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
++++|+..++++.+..|. +..+|..++.+|...|++++|++.+++.+
T Consensus 65 ~~~~A~~~~~~al~~~p~---~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 65 KDGLAIIALNHARMLDPK---DIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhcccccccccccc---cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999999999999876 89999999999999999999999999864
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=9e-06 Score=74.82 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
..|..++.+|.+.|++++|+..++++++..|. +..+|..++.++...|++++|+..|+++++ +.|+ ..+...|.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~---~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~ 152 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhhh---hhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 46778999999999999999999999999886 889999999999999999999999999999 6785 77888888
Q ss_pred HHHHhcCCHHHH
Q 001911 962 KGLIRVNKWEEA 973 (997)
Q Consensus 962 ~~y~~~g~~~eA 973 (997)
.++.+..+..++
T Consensus 153 ~~~~~l~~~~~~ 164 (169)
T d1ihga1 153 KVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887766655554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.16 E-value=2.2e-05 Score=71.93 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.|..++.+|.+.|++++|++.+++++..+|. +..+|..++.++...|++++|+..|+++++ +.|+ ..+...+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~---~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 5677899999999999999999999998876 889999999999999999999999999999 7785 778888888
Q ss_pred HHHhcCCHHH-HHHHHHHh
Q 001911 963 GLIRVNKWEE-ALQLSYSI 980 (997)
Q Consensus 963 ~y~~~g~~~e-A~~~~~~~ 980 (997)
+....+++.+ ..+.+.+|
T Consensus 141 ~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 141 CQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 8877776544 44444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.14 E-value=1.4e-05 Score=71.81 Aligned_cols=79 Identities=13% Similarity=0.005 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
.+|..++.+|.+.|++++|++.++++++.+|. +..+|..++.++...|++++|+..|+++++ +.|+ ..+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~---~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~ 142 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYE 142 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch---hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 35778999999999999999999999998876 889999999999999999999999999999 7785 67777776
Q ss_pred HHHHh
Q 001911 962 KGLIR 966 (997)
Q Consensus 962 ~~y~~ 966 (997)
.+.-+
T Consensus 143 ~~~~k 147 (153)
T d2fbna1 143 LCVNK 147 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.2e-06 Score=96.95 Aligned_cols=226 Identities=10% Similarity=-0.093 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 692 EAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV-IYTEMIDGLIKVGKTEEAYKVMLMM 770 (997)
Q Consensus 692 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 770 (997)
+|.+.|+++.+..+. ....+..+..++...+++++| |++++.. .|+.. ..+.. ..+.+ ..+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e-~~Lw~-~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE-QDLWN-HAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH-HHHHH-HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH-HHHHH-HHHHHHHHHHHHh
Confidence 677888888775322 233555666777777777765 5665543 23211 11111 11111 1234566666666
Q ss_pred HHCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001911 771 EEKGCYPNVVTYTAMIDG--FGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPT 847 (997)
Q Consensus 771 ~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 847 (997)
.+....++..-....... ....+.++.|+..+++... +.| +...+..+...+.+.|+.++|...+++....
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---- 149 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---- 149 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH----
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC----
Confidence 554333332222211111 1223444555544444333 234 4566777777777788888777766554321
Q ss_pred chhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 001911 848 HVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIE 927 (997)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 927 (997)
.| ..++..+++.+...|++++|+..|+++.+..|+ +...|+.|+.
T Consensus 150 -------------------------------~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~---~~~~~~~Lg~ 194 (497)
T d1ya0a1 150 -------------------------------IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS---NGQPYNQLAI 194 (497)
T ss_dssp -------------------------------HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---BSHHHHHHHH
T ss_pred -------------------------------CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---chHHHHHHHH
Confidence 01 124667888888889999999999998888776 7888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 001911 928 SLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN 968 (997)
Q Consensus 928 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g 968 (997)
.+...|+..+|+..|.+++. ..|. +.++..|+..+.+..
T Consensus 195 ~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence 88888999999999999888 4454 788888888876544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.12 E-value=1.3e-05 Score=72.03 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--c-----------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSA--A-----------SRNSTLLLIESLSLARKIDKAFELYVDMIRKDG 950 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 950 (997)
.+...++.+.+.|++++|+..|++++...+... + ...++..++.+|.+.|++++|+..++++++ +
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~--~ 96 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--I 96 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc--c
Confidence 456688899999999999999999886543221 1 124677899999999999999999999999 6
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 951 SPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 951 ~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.|+ ..+|..++.+|...|++++|+..+++.+..+..
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 785 899999999999999999999999999887643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.3e-06 Score=96.65 Aligned_cols=269 Identities=11% Similarity=0.013 Sum_probs=147.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 657 EAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNV-YTYGSLIDRLFKDKRLDLALKVISKM 735 (997)
Q Consensus 657 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 735 (997)
+|.+.|++..... +.....+..+..++...|++++| +++++... |+. ...+ +....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~--~e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKK--VEQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHT--HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHh--HHHHHHHHHHHHHHHHHHHh
Confidence 6888888887653 22344566677788888888776 67776653 221 1111 11111111245567777777
Q ss_pred HhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 001911 736 LEDSYAPNVVIYTEMIDG--LIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN 813 (997)
Q Consensus 736 ~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 813 (997)
.+....++..-....... +...+.++.|+..+....+.. .++...+..+...+.+.|+.++|...+++.... . .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~-~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I-C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--H-H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C-H
Confidence 665433443322222222 223345555555444443321 235566777888889999999999988877653 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh-hhHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV-PAYRILIDHY 892 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~ 892 (997)
..++..+.+.+...|++++|..++++..+.. |+. ..|+.|+.+|
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-----------------------------------P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-----------------------------------PSNGQPYNQLAILA 196 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----------------------------------CCchHHHHHHHHHH
Confidence 4678889999999999999999999987643 554 4899999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWE 971 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~ 971 (997)
...|+..+|+..|.+++...| |-..++.+|+..+.+..+..++.. .....++ ...+..+...++..+.++
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~---~~~~a~~nL~~~~~~~~~~~~~~~------~~~~~~~~~~~f~~~~~~l~~~~~~~ 267 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKF---PFPAASTNLQKALSKALESRDEVK------TKWGVSDFIKAFIKFHGHVYLSKSLE 267 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSB---CCHHHHHHHHHHHHHHTTSCCCCC------SSCCHHHHHHHHHHHHHHHHHTCCGG
T ss_pred HHcCCHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhhhhhhhhc------cccccchHHHHHHHHHHHHHhCCchh
Confidence 999999999999999998765 377888888776654332111100 0000011 234556666677777777
Q ss_pred HHHHHHHHhh
Q 001911 972 EALQLSYSIC 981 (997)
Q Consensus 972 eA~~~~~~~~ 981 (997)
+..++.+++.
T Consensus 268 ~~~~~~~~~~ 277 (497)
T d1ya0a1 268 KLSPLREKLE 277 (497)
T ss_dssp GHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 7777666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3.4e-05 Score=66.81 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
.+..+...+...|++++|+..|++..+.. +.+...+..++.+|.+.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~----------------------------------p~~~~~~~~~a~~~~~~ 51 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD----------------------------------PTNMTYITNQAAVYFEK 51 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------cccHHHHHhHHHHHHHc
Confidence 35567888999999999999999987643 23456788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAAS----RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHL 960 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 960 (997)
|++++|++.++++++..|..... ..+|..++..+...+++++|+..|++.+. ..|+......+
T Consensus 52 ~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 118 (128)
T d1elra_ 52 GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKC 118 (128)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCHHHHHHH
Confidence 99999999999998865532111 24666778888888999999999999988 45665544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=2.1e-05 Score=72.31 Aligned_cols=100 Identities=9% Similarity=0.117 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-------------CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSN-------------SAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS 951 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 951 (997)
+...+..+...|++++|++.|+++++..+. .+.....+..++.++.+.|++++|+..++++++ +.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~ 107 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--ID 107 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh--hh
Confidence 456778889999999999999988642100 012456778889999999999999999999999 77
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 952 PE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 952 p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
|+ +.+|..++.+|...|++++|+..++++++.+.+
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 86 899999999999999999999999999887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.97 E-value=3.1e-05 Score=70.93 Aligned_cols=102 Identities=14% Similarity=-0.000 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSA------------ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS 951 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 951 (997)
.+...++.+.+.|++++|+..|++++...+... ....++..++.+|.+.|++++|+..++++++ +.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~ 94 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LD 94 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh--cc
Confidence 466789999999999999999999875322111 1224566788899999999999999999999 67
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 952 PE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 952 p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
|+ ..++..++.+|...|++++|+..+++++..+.+.
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n 131 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 131 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 85 8899999999999999999999999998876543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.02 Score=57.42 Aligned_cols=293 Identities=12% Similarity=0.082 Sum_probs=147.3
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 232 KPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISG 311 (997)
Q Consensus 232 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~ 311 (997)
.||..--..+..-|.+.|.++.|..+|..+. -+.-++..|.+.++++.|.+.+.+. -+..+|..+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~---~~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH---TCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc---CCHHHHHHHHHH
Confidence 4555555566666777777777777777543 3456667777777777777777763 356677777777
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 312 LCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYA 391 (997)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 391 (997)
+.+.....-| .+.......+......++..|-..|.+++...+++...... ..+...++-++..|++.+.
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~---- 148 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP---- 148 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH----
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh----
Confidence 7766555432 22233334455555677777777888888877777765432 4566677788888877642
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHH
Q 001911 392 YKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVI 471 (997)
Q Consensus 392 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll 471 (997)
.++.+.+...+-.-|. ..++.. |... ..+..++..|.+.|.+++|..++
T Consensus 149 ~kl~e~l~~~s~~y~~---~k~~~~-c~~~---------------------------~l~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 149 QKMREHLELFWSRVNI---PKVLRA-AEQA---------------------------HLWAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HHHHHHHHHHSTTSCH---HHHHHH-HHTT---------------------------TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccccCCH---HHHHHH-HHHc---------------------------CChHHHHHHHHhcCCHHHHHHHH
Confidence 3344444331111111 111111 1110 11223444455666666665544
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 001911 472 REMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDP 551 (997)
Q Consensus 472 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 551 (997)
-. . .++.......+..+.+..+.+...++.....+. .| ...+.++......-+...
T Consensus 198 i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r--------------- 253 (336)
T d1b89a_ 198 MN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTR--------------- 253 (336)
T ss_dssp HH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHH---------------
T ss_pred HH---c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHH---------------
Confidence 22 1 233333444445555555554444444443332 11 122333333333333322
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 552 NVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIY 611 (997)
Q Consensus 552 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 611 (997)
++..+-+.++.......++...+.+ +....+++...|...++++.-.+..
T Consensus 254 -------~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 254 -------AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp -------HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3344445555666666666655544 3467778888888888865544333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.014 Score=58.43 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=95.6
Q ss_pred cccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001911 445 VLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTIL 524 (997)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 524 (997)
.+|......++..|.+.|.++.|..++..+. -|..++..+.+.++++.|.+.+.... +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 3445555566777778999999999997652 36778888889999999988877542 67788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 525 IDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDI 604 (997)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 604 (997)
...+.+.....-| .+.......++.....++..|-..|.+++...+++...... ..+...++-++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 8888887766554 22233334466667788999999999999999999876542 567778888988888764 3
Q ss_pred HHHHHHHH
Q 001911 605 ERACRIYA 612 (997)
Q Consensus 605 ~~A~~~~~ 612 (997)
++-.+.++
T Consensus 149 ~kl~e~l~ 156 (336)
T d1b89a_ 149 QKMREHLE 156 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.82 E-value=1.8e-05 Score=70.23 Aligned_cols=116 Identities=10% Similarity=0.047 Sum_probs=85.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc--------
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA-------- 895 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 895 (997)
|.+.+.+++|+..+++..+.. +.+..++..++.+|...
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~----------------------------------P~~~~~~~~~g~~l~~~~~~~~~~e 52 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN----------------------------------PLDADNLTRWGGVLLELSQFHSISD 52 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC----------------------------------CcchHHHHHHHHHHHHhhhhhhhhH
Confidence 456677888888888877643 23345777788777643
Q ss_pred --CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 896 --GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR-----------KIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 896 --g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
+.+++|++.|+++++.+|. +..+|..++.+|...| ++++|.+.|+++++ +.|+ ...+..|+
T Consensus 53 ~~~~~~~Ai~~~~kAl~l~P~---~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~ 127 (145)
T d1zu2a1 53 AKQMIQEAITKFEEALLIDPK---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 127 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcch---hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHH
Confidence 5568999999999999886 8899999999997754 37999999999999 7897 44555565
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCC
Q 001911 962 KGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
.. ..|.+++..+..+|+
T Consensus 128 ~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 128 MT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HH-------HTHHHHHHHHHHSSS
T ss_pred HH-------HHHHHHHHHHHHHhc
Confidence 55 355555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.82 E-value=2.2e-05 Score=70.87 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=80.5
Q ss_pred hHHHH--HHHHHhcCCHHHHHHHHHHHhcCCCCCCc---------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 001911 884 AYRIL--IDHYIKAGRLEVALELHEEMTSFSSNSAA---------SRNSTLLLIESLSLARKIDKAFELYVDMIRK---- 948 (997)
Q Consensus 884 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 948 (997)
+|..+ +..+...|++++|++.|+++++..|.... ...+|..++.+|...|++++|+..++++++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 45555 56778899999999999999986554321 2467889999999999999999999999862
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 949 -DGSPE-----LSTFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 949 -~~~p~-----~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
...++ ..+++.++.+|...|++++|+..+++.++...
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 12333 23678899999999999999999999876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=5.9e-05 Score=61.04 Aligned_cols=79 Identities=13% Similarity=-0.092 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNS----AASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
.+..++..+.+.|++++|+..|+++.+..|.. .....++..|+.++.+.|++++|+..|+++++ +.|+ ..++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~~a~~ 84 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCHHHHH
Confidence 35579999999999999999999998653321 22367889999999999999999999999999 7896 77777
Q ss_pred HHHHHH
Q 001911 959 HLIKGL 964 (997)
Q Consensus 959 ~l~~~y 964 (997)
.+....
T Consensus 85 Nl~~~~ 90 (95)
T d1tjca_ 85 NLKYFE 90 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=2.6e-05 Score=69.21 Aligned_cols=91 Identities=9% Similarity=-0.038 Sum_probs=77.4
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 892 YIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----------RKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 892 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
|.+.+.+++|++.|+++.+.+|+ +..++..++.++... +++++|+..|+++++ +.|+ ..+|+.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~---~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc---chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhH
Confidence 45677899999999999999887 899999999988753 456899999999999 7896 8899999
Q ss_pred HHHHHhcCC-----------HHHHHHHHHHhhccCCcc
Q 001911 961 IKGLIRVNK-----------WEEALQLSYSICHTDINW 987 (997)
Q Consensus 961 ~~~y~~~g~-----------~~eA~~~~~~~~~~~~~~ 987 (997)
+.+|...|+ +++|.+.+++.++.....
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~ 119 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 119 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence 999988764 688999999888766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=0.00024 Score=65.16 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc-------------------chhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAA-------------------SRNSTLLLIESLSLARKIDKAFELYVD 944 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 944 (997)
.....+......|++++|.+.|.+++...++... ....+..++..+...|++++|+..+++
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~ 92 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 92 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3456778889999999999999999987554321 114567788899999999999999999
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 945 MIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 945 ~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
+++ ..| +..+|..|+.+|.+.|++.+|++.|+++.
T Consensus 93 al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 93 LTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999 778 47899999999999999999999999873
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.0015 Score=59.65 Aligned_cols=73 Identities=16% Similarity=0.067 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR-----KDGSPELSTF 957 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 957 (997)
..+..++..+.+.|++++|+..++++....|. +...|..++.+|...|++++|++.|+++.+ .|+.|...+.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~---~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 45778999999999999999999999999886 999999999999999999999999999844 6899986543
Q ss_pred H
Q 001911 958 V 958 (997)
Q Consensus 958 ~ 958 (997)
.
T Consensus 145 ~ 145 (179)
T d2ff4a2 145 A 145 (179)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=9.1e-05 Score=72.82 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=90.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALE 903 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 903 (997)
..+.|++++|+..+++..+.. +.+...+..++.+|+..|++++|++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~----------------------------------P~d~~ar~~La~lL~~~G~~e~A~~ 51 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS----------------------------------PKDASLRSSFIELLCIDGDFERADE 51 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC----------------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 446799999999999987753 3345688899999999999999999
Q ss_pred HHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 904 LHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.++.+.+..|. +...+..++..+...+..+++...+.+.... ..|+ ...+...+..+...|++++|...++++.+
T Consensus 52 ~l~~a~~l~P~---~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 52 QLMQSIKLFPE---YLPGASQLRHLVKAAQARKDFAQGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HHHHHHHHCGG---GHHHHHHHHHHHHHHHHHHHHTTSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---cHHHHHHHHHHHHhccccHHHHHHhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999998765 6667777777666555555544332222211 1232 45566778889999999999999988765
Q ss_pred cC
Q 001911 983 TD 984 (997)
Q Consensus 983 ~~ 984 (997)
..
T Consensus 128 ~~ 129 (264)
T d1zbpa1 128 LR 129 (264)
T ss_dssp HC
T ss_pred cC
Confidence 43
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.27 E-value=0.0004 Score=68.10 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=39.4
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
..+.|++++|+..+++.++. .| |...+..++..|+..|++++|...++...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34567888888888887775 45 5777777888888888888888888777654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0025 Score=50.99 Aligned_cols=84 Identities=14% Similarity=0.010 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDH 891 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~ 891 (997)
+...+..+...+.+.|++++|..++++..+.... . ....++ ..++..|+.+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~---------------------------~-~~~~~~~~~~l~~Lg~~ 55 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDE---------------------------G-EISTIDKVSVLDYLSYA 55 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---------------------------T-CCCSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh---------------------------h-hccCccHHHHHHHHhhH
Confidence 4455667889999999999999999987643100 0 011223 3478889999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 001911 892 YIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIE 927 (997)
Q Consensus 892 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 927 (997)
|.+.|++++|++.++++++..|+ +..++..+..
T Consensus 56 ~~~~g~~~~A~~~y~~aL~l~P~---~~~a~~Nl~~ 88 (95)
T d1tjca_ 56 VYQQGDLDKALLLTKKLLELDPE---HQRANGNLKY 88 (95)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHhCcC---CHHHHHHHHH
Confidence 99999999999999999999886 6777777643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.99 E-value=0.0017 Score=57.87 Aligned_cols=108 Identities=13% Similarity=0.027 Sum_probs=75.3
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHhcC--CCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHH
Q 001911 815 VTYRVL--INHCCASGLLDEAHNLLEEMKQTY--WPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILI 889 (997)
Q Consensus 815 ~~~~~l--~~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~ 889 (997)
.+|..+ ...+...|++++|+..|++..+.. .+..... ...+ ....|+.++
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~-------------------------~~~~~~a~~~~nlg 62 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF-------------------------DHAGFDAFCHAGLA 62 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC-------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc-------------------------ccchhHHHHHHHHH
Confidence 345555 556678899999999999876531 1100000 0000 123678899
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCC---CC-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSN---SA-----ASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+|...|++++|++.+++++...+. .. ....++..++.+|...|++++|+..|+++++
T Consensus 63 ~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 63 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764221 00 1233577889999999999999999999987
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.33 E-value=0.033 Score=47.41 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR--- 966 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~--- 966 (997)
...+.++|++.++++.+.. ++.....|+..|.. ..++++|.+.|++..+.| ++.+...|+..|..
T Consensus 35 ~~~~~~~a~~~~~~aa~~g-----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~g 106 (133)
T d1klxa_ 35 SQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG 106 (133)
T ss_dssp TTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred cccCHHHHHHHHhhhhccc-----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCc
Confidence 4568889999999988764 67777778887765 357899999999998854 56677888888876
Q ss_pred -cCCHHHHHHHHHHhhccCC
Q 001911 967 -VNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 967 -~g~~~eA~~~~~~~~~~~~ 985 (997)
..+.++|..++++..+.|-
T Consensus 107 v~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 107 VVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHCCC
Confidence 4578899999998877664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.21 E-value=0.037 Score=47.07 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 001911 883 PAYRILIDHYIK----AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 883 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 949 (997)
.+...|+..|.. ..+.++|.+.|+++.+.. ++.....|+..|.. ..+.++|.+.|+++.+.|
T Consensus 56 ~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 56 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 445556666654 457888999999988764 66677778877766 357889999999988866
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.018 Score=47.30 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=46.4
Q ss_pred chhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccch
Q 001911 918 SRNSTLLLIESLSLAR---KIDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
...+-..++|++.+.. +.++|+.+++++.+. .|+ ...++.|+-+|.+.|++++|.++++++++....+.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 4556666777776653 356777777777763 353 356777777777777777777777777776666544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=2.2 Score=44.28 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 925 LIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 925 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
.+..+...|+...|...+..+.+. .+..-...++....+.|.++.|+....+.
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 455667789999999999888763 24555778899999999999999887764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.96 E-value=1.2 Score=35.65 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 921 STLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 921 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
....-+..+.++|+-++-.+++..+.+. -.|.++....++.+|.+.|...+|-+++.+.++.|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3344455667889989888898887775 467888999999999999999999999999988876
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.36 Score=39.26 Aligned_cols=70 Identities=7% Similarity=-0.017 Sum_probs=55.3
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAG---RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
|...+-...+.++.+.. ++++|+.+++.+....|. .....+..|+-+|.+.|++++|.+.++++++ +.|+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~--~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence 45555566777777664 567899999998876532 1346888899999999999999999999999 7896
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.48 E-value=19 Score=36.63 Aligned_cols=31 Identities=13% Similarity=-0.083 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001911 517 DVYTYTILIDNFCKAGLIEQARNWFDEMVKE 547 (997)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 547 (997)
+...-.....+..+.|+.++|...+..+-..
T Consensus 101 ~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 3444444555555666666665555544433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=85.59 E-value=7.3 Score=30.98 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=21.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 648 GLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHG 704 (997)
Q Consensus 648 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 704 (997)
.+.+.|+-++-.++++.+.+.+ .+++...-.+..+|.+.|...++-+++.++.+.|
T Consensus 95 ~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 95 ILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3333444444444444333322 3333333334444444444444444444444433
|