Citrus Sinensis ID: 001931

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990-----
MACLCRATGFFASSWKPGCLLPSRPQRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
cccccccHHHHHHHccccccccccccEEEEEccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccEEEEEccccccccccccccccccHHHccccccccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHccccccccEEEEEEccccccEEEEEEEEEEEccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccHHcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccc
cccccccHHHHHHHccccccccccccEEEEccccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccHHHHEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHcccEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHcccccccccHHHccccccccccHHHHHHHHccccHccccccccccccccccccccccccccccccccccccHccccccHHHHccccccccccccccccccccccccHHHcccHHccccccccccccccccccccccccccccHHHHHHHHccccHcccccccccccccHHcccccHHHHcccccHHHHHcccccccccccccccccccHHHHHccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHcccccccccccHHHHHcHccEcccccccccccccccccccccEccccccccccccccHHHHHcHcEEEEEEEcc
maclcratgffasswkpgcllpsrpqRVAASMQKendfipnypnlpsKLICMLHsvtlhadpetdEVYAQMTLQPVNKYEKEAILASDmglkqnrqpteFFCKtltasdtsthggfsvprraaekifppldysmqppaqeivardlhdttwtfrhiyrgqpkrhllttgWSVFVStkrlfagdsvlFIRDEKSQLLLGIRRAnrqqpalsssvissdsMHIGILAAAAHaaannspftifynpraspsefvipLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYmgtitsisdldplrwknsqwrnlqvgwdestagerpsrvslwetepvvtpfyicpppffrpkfpkqpgmpddesDIENAFKRampwlgddfgmkdatssifpglSLVQWMSMQqnnqfpaaqsgffpsmvsstglhsnfgtddpsklLNFQAsalaapnlqfskanpqnqvnqlpqspiaWTQQQQLQHLLQnplnqqqqqhpQLHQQRQQQQQLLHPQQSQQQQQQQQnhhhhnqqpppppqlqpsptpphsqsqsqspvpqrpqqqpqqqqqqpqqqiflpthvnngvlvpnanqnvqqptvysqlqqpqlltsntqapqgilsnnknsyqltslpqdsQFQQQMeqstgplqrqqQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLlspagsllqpQLLQQQLAHQQNqqlsqlppsqnhqqqlsnnlsasvlvqpqqlpmnqpqnqnrpltgtrahsnhtdgdapscstspssnncqispsnflnrnqqgpamlmgdsvvepssnLVQELHsksdarikhelpiskgpehlkyngsmtdqveasssgtsycldpgniqqnfslptycldgdtqshprnslpfvanidgmapdtllsrgydsQKDLHNLLsnyggtprdieTELStaaissqsfavpnipfkpacsnevgineagvlgnglwanqTQRMRTFTKVCYAIYSL
maclcratgffasswkpgcllPSRPQRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLtasdtsthggfsvpRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIyrgqpkrhllttGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITsisdldplrwkNSQWRNLqvgwdestagerpsrvslwetepvvTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHsksdarikhelpiskgpehlkyNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLwanqtqrmrTFTKVCYAIYSL
MACLCRATGFFASSWKPGCLLPSRPQRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALsssvissdsMHIGILaaaahaaaNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICpppffrpkfpkqpGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTqqqqlqhllqnplnqqqqqhpqlhqqrqqqqqllhpqqsqqqqqqqqnhhhhnqqpppppqlqpsptpphsqsqsqspvpqrpqqqpqqqqqqpqqqIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPqdsqfqqqmeqSTGplqrqqqqsqlqqsslqflqqslaqraqqqpqvqqlaqqsmsdqqlqsqlqqklqqqqqqqllspagsllqpqllqqqlahqqnqqlsqlppsqnhqqqlsnnlsasvlvqpqqlpmnqpqnqnRPLTGTRAHSNHTDGDApscstspssnncQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
**CLCRATGFFASSWKPGCLLP**************DFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILAS**********TEFFCKTLTA*****************KIFPPLDY*****AQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRR****************SMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTA****SRVSLWETEPVVTPFYICPPPFFR*******************FKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSM*********************************************************************************************************************************************************************************VL***********************************************************************************************************************************************************************************************************************************************************************************************YCLDPGNIQQNFSLPTYCLDG*********LPFVANIDGMAPDTLLS********LHNLLSNYG************AAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIY**
***LCRATGFFASSWKPGCLLPSRPQRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPV***********************FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRA******************IGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVT************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHN*************************FAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
MACLCRATGFFASSWKPGCLLPSRPQRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRA************SSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDE*********VSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPL**********************************************************************************QQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLP*****************************LQFLQ******************************************LSPAGSLLQPQLLQQ***********************SNNLSASVLVQPQQLPMNQPQ*******************************CQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
MACLCRATGFFASSWKPGCLLPSRPQRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVN****************NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANR***************HIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDD**DIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASA*************************************************************************************************************************************NGVLV******************************************************************************************************************************************************************************************************************************************SVV****N**QELH**SD**IK************K*NGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
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MACLCRATGFFASSWKPGCLLPSRPQRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query995 2.2.26 [Sep-21-2011]
Q8RYC81086 Auxin response factor 19 yes no 0.435 0.398 0.831 0.0
P93022 1164 Auxin response factor 7 O no no 0.440 0.376 0.802 0.0
A3B9A01055 Auxin response factor 16 yes no 0.421 0.397 0.780 0.0
A2YAA51055 Auxin response factor 16 N/A no 0.421 0.397 0.777 0.0
Q6Z2W31142 Auxin response factor 5 O yes no 0.486 0.423 0.640 1e-167
Q0D9R7 1161 Auxin response factor 19 yes no 0.404 0.346 0.736 1e-160
Q6YZW01116 Auxin response factor 21 no no 0.433 0.386 0.656 1e-158
Q9ZTX8935 Auxin response factor 6 O no no 0.363 0.387 0.674 1e-136
Q6H6V4908 Auxin response factor 6 O no no 0.407 0.446 0.611 1e-135
A2X1A1908 Auxin response factor 6 O N/A no 0.407 0.446 0.611 1e-135
>sp|Q8RYC8|ARFS_ARATH Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2 Back     alignment and function desciption
 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/433 (83%), Positives = 399/433 (92%)

Query: 26  QRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAIL 85
           ++VAASMQK+ DFIPNYPNLPSKLIC+LHSVTLHAD ETDEVYAQMTLQPVNKY++EA+L
Sbjct: 51  EQVAASMQKQTDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALL 110

Query: 86  ASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARD 145
           ASDMGLK NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQEIVA+D
Sbjct: 111 ASDMGLKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKD 170

Query: 146 LHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQ 205
           LHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLF+RDEKSQL+LGIRRANRQ
Sbjct: 171 LHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQ 230

Query: 206 QPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQV 265
            P LSSSVISSDSMHIGILAAAAHA AN+SPFTIF+NPRASPSEFV+PLAKYNKA+Y QV
Sbjct: 231 TPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQV 290

Query: 266 SLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVS 325
           SLGMRFRMMFETE+ GVRRYMGT+T ISDLDP+RWK SQWRNLQVGWDESTAG+RPSRVS
Sbjct: 291 SLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVS 350

Query: 326 LWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSI 385
           +WE EPV+TPFYICPPPFFRPK+P+QPGMPDDE D+ENAFKRAMPW+G+DFGMKDA SS+
Sbjct: 351 IWEIEPVITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSM 410

Query: 386 FPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNL 445
           FPGLSLVQWMSMQQNN    + +   PS +SS  L +NF ++DPSKLLNFQ+  L++ N 
Sbjct: 411 FPGLSLVQWMSMQQNNPLSGSATPQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANS 470

Query: 446 QFSKANPQNQVNQ 458
           QF+K N  N ++Q
Sbjct: 471 QFNKPNTVNHISQ 483
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7.
Arabidopsis thaliana (taxid: 3702)
>sp|P93022|ARFG_ARATH Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2 Back     alignment and function description
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|A2YAA5|ARFP_ORYSI Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z2W3|ARFE_ORYSJ Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2 Back     alignment and function description
>sp|Q0D9R7|ARFS_ORYSJ Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2 Back     alignment and function description
>sp|Q6YZW0|ARFU_ORYSJ Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function description
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query995
357479369 1120 Auxin response factor [Medicago truncatu 0.443 0.393 0.875 0.0
255550359 1119 Auxin response factor, putative [Ricinus 0.444 0.394 0.904 0.0
2240692041057 predicted protein [Populus trichocarpa] 0.455 0.428 0.894 0.0
297738525878 unnamed protein product [Vitis vinifera] 0.413 0.468 0.896 0.0
356530459 1125 PREDICTED: uncharacterized protein LOC10 0.456 0.403 0.865 0.0
2254446471084 PREDICTED: auxin response factor 19-like 0.442 0.405 0.888 0.0
356556410 1122 PREDICTED: uncharacterized protein LOC10 0.454 0.402 0.864 0.0
449488115 1097 PREDICTED: auxin response factor 19-like 0.442 0.401 0.886 0.0
356565674 1136 PREDICTED: uncharacterized protein LOC10 0.443 0.388 0.877 0.0
474966921081 auxin response factor 1 [Cucumis sativus 0.442 0.407 0.886 0.0
>gi|357479369|ref|XP_003609970.1| Auxin response factor [Medicago truncatula] gi|355511025|gb|AES92167.1| Auxin response factor [Medicago truncatula] Back     alignment and taxonomy information
 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/441 (87%), Positives = 414/441 (93%)

Query: 26  QRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAIL 85
           ++VAASMQK+ DFIP+YPNLPSKLICMLH+V LHADPETDEVYAQMTLQPVNKY+K+AIL
Sbjct: 51  EQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAIL 110

Query: 86  ASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARD 145
           ASD GLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQE+VA+D
Sbjct: 111 ASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKD 170

Query: 146 LHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQ 205
           LHD TW FRHIYRGQPKRHLLTTGWSVF+STKRLFAGDSVLFIRDEK QLLLG+RRANRQ
Sbjct: 171 LHDNTWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQ 230

Query: 206 QPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQV 265
           QPALSSSVISSDSMHIGILAAAAHAAANNSPFTI+YNPRASPSEFV+PLAKYNKAMYTQV
Sbjct: 231 QPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQV 290

Query: 266 SLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVS 325
           SLGMRFRMMFETEESGVRRYMGT+T ISDLDP+RWKNSQWRNLQVGWDESTAGERPSRVS
Sbjct: 291 SLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVS 350

Query: 326 LWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSI 385
           +W+ EPVVTPFYICPPPFFR  FP  PGMPDD SD+EN+FKRAMPWLGDDFGMKDA+SS+
Sbjct: 351 IWDIEPVVTPFYICPPPFFRQNFPGHPGMPDDGSDVENSFKRAMPWLGDDFGMKDASSSV 410

Query: 386 FPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNL 445
           FPGLSLVQWMSMQQ NQF  AQSG FPSM+SS  LHSN  TDDPSKLL+FQA AL+APNL
Sbjct: 411 FPGLSLVQWMSMQQKNQFSGAQSGCFPSMLSSNTLHSNLSTDDPSKLLSFQAPALSAPNL 470

Query: 446 QFSKANPQNQVNQLPQSPIAW 466
           QF+K N  NQ+NQL QSP +W
Sbjct: 471 QFNKPNLPNQINQLQQSPTSW 491

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550359|ref|XP_002516230.1| Auxin response factor, putative [Ricinus communis] gi|223544716|gb|EEF46232.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224069204|ref|XP_002326300.1| predicted protein [Populus trichocarpa] gi|222833493|gb|EEE71970.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738525|emb|CBI27770.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530459|ref|XP_003533798.1| PREDICTED: uncharacterized protein LOC100804628 [Glycine max] Back     alignment and taxonomy information
>gi|225444647|ref|XP_002276637.1| PREDICTED: auxin response factor 19-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556410|ref|XP_003546519.1| PREDICTED: uncharacterized protein LOC100815277 [Glycine max] Back     alignment and taxonomy information
>gi|449488115|ref|XP_004157943.1| PREDICTED: auxin response factor 19-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356565674|ref|XP_003551063.1| PREDICTED: uncharacterized protein LOC100816054 [Glycine max] Back     alignment and taxonomy information
>gi|47496692|dbj|BAD19061.1| auxin response factor 1 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query995
TAIR|locus:22022051086 ARF19 "auxin response factor 1 0.439 0.402 0.764 6.6e-247
TAIR|locus:2204237935 ARF6 "auxin response factor 6" 0.424 0.451 0.559 1.9e-121
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.414 0.508 0.541 4.1e-119
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.431 0.475 0.526 1.1e-116
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.307 0.356 0.491 8.7e-79
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.306 0.458 0.477 2.7e-75
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.304 0.474 0.464 3.7e-74
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.295 0.373 0.486 2e-72
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.301 0.482 0.480 3.7e-72
TAIR|locus:2057609608 ETT "ETTIN" [Arabidopsis thali 0.313 0.513 0.466 3.7e-71
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1793 (636.2 bits), Expect = 6.6e-247, Sum P(3) = 6.6e-247
 Identities = 334/437 (76%), Positives = 372/437 (85%)

Query:    26 QRVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAIL 85
             ++VAASMQK+ DFIPNYPNLPSKLIC+LHSVTLHAD ETDEVYAQMTLQPVNKY++EA+L
Sbjct:    51 EQVAASMQKQTDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALL 110

Query:    86 ASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARD 145
             ASDMGLK NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQEIVA+D
Sbjct:   111 ASDMGLKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKD 170

Query:   146 LHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQ 205
             LHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLF+RDEKSQL+LGIRRANRQ
Sbjct:   171 LHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQ 230

Query:   206 QPALXXXXXXXXXMHIGILXXXXXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQV 265
              P L         MHIGIL        N+SPFTIF+NPRASPSEFV+PLAKYNKA+Y QV
Sbjct:   231 TPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQV 290

Query:   266 SLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVS 325
             SLGMRFRMMFETE+ GVRRYMGT+T ISDLDP+RWK SQWRNLQVGWDESTAG+RPSRVS
Sbjct:   291 SLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVS 350

Query:   326 LWETEPVVTPFYICXXXXXXXXXXXXXGMPDDESDIENAFKRAMPWLGDDFGMKDATSSI 385
             +WE EPV+TPFYIC             GMPDDE D+ENAFKRAMPW+G+DFGMKDA SS+
Sbjct:   351 IWEIEPVITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSM 410

Query:   386 FPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNL 445
             FPGLSLVQWMSMQQNN    + +   PS +SS  L +NF ++DPSKLLNFQ+  L++ N 
Sbjct:   411 FPGLSLVQWMSMQQNNPLSGSATPQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANS 470

Query:   446 QFSKANPQNQVNQLPQS 462
             QF+K N  N ++Q  Q+
Sbjct:   471 QFNKPNTVNHISQQMQA 487
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0009733 "response to auxin stimulus" evidence=RCA;IMP;NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0048366 "leaf development" evidence=IGI
GO:0048527 "lateral root development" evidence=IGI;RCA
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0003677 "DNA binding" evidence=IDA
GO:0010311 "lateral root formation" evidence=IGI
GO:0007155 "cell adhesion" evidence=RCA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0046983 "protein dimerization activity" evidence=IDA
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057609 ETT "ETTIN" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A3B9A0ARFP_ORYSJNo assigned EC number0.78000.42110.3971yesno
Q8RYC8ARFS_ARATHNo assigned EC number0.83140.43510.3987yesno
Q0D9R7ARFS_ORYSJNo assigned EC number0.73670.40400.3462yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00280060
hypothetical protein (1057 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query995
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 1e-47
pfam0236297 pfam02362, B3, B3 DNA binding domain 9e-30
smart0101996 smart01019, B3, B3 DNA binding domain 2e-28
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 2e-22
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 2e-15
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-14
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 6e-13
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-12
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 6e-12
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 4e-11
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 5e-11
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 3e-09
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 4e-09
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 8e-09
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 5e-08
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 6e-08
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 1e-07
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 5e-07
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 8e-07
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-06
TIGR00618 1042 TIGR00618, sbcc, exonuclease SbcC 1e-06
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-06
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 3e-06
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 3e-06
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 3e-06
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 4e-06
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 7e-06
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 9e-06
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 1e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 2e-05
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 2e-05
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 4e-05
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 4e-05
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 5e-05
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 6e-05
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 8e-05
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 1e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 1e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 1e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 1e-04
PRK102461047 PRK10246, PRK10246, exonuclease subunit SbcC; Prov 1e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 2e-04
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 2e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 2e-04
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 3e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 3e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 3e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 3e-04
PRK10246 1047 PRK10246, PRK10246, exonuclease subunit SbcC; Prov 3e-04
COG5624505 COG5624, TAF61, Transcription initiation factor TF 3e-04
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 3e-04
PRK10927319 PRK10927, PRK10927, essential cell division protei 4e-04
smart00935140 smart00935, OmpH, Outer membrane protein (OmpH-lik 6e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 7e-04
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 7e-04
COG5624505 COG5624, TAF61, Transcription initiation factor TF 7e-04
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 8e-04
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 8e-04
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 8e-04
COG1570440 COG1570, XseA, Exonuclease VII, large subunit [DNA 8e-04
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.001
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.001
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.001
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
PRK10920390 PRK10920, PRK10920, putative uroporphyrinogen III 0.001
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.001
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.002
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.002
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 0.002
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.002
TIGR01000457 TIGR01000, bacteriocin_acc, bacteriocin secretion 0.002
pfam03157779 pfam03157, Glutenin_hmw, High molecular weight glu 0.002
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 0.003
PRK10920390 PRK10920, PRK10920, putative uroporphyrinogen III 0.003
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 0.003
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.004
TIGR00618 1042 TIGR00618, sbcc, exonuclease SbcC 0.004
pfam04652315 pfam04652, DUF605, Vta1 like 0.004
pfam02948174 pfam02948, Amelogenin, Amelogenin 0.004
pfam03938157 pfam03938, OmpH, Outer membrane protein (OmpH-like 0.004
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  163 bits (416), Expect = 1e-47
 Identities = 55/83 (66%), Positives = 67/83 (80%)

Query: 227 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYM 286
           AAHAA+  SPF +FYNPRAS SEFV+P AKY KAM    S+GMRF+M FETE+S  RR+ 
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRFS 60

Query: 287 GTITSISDLDPLRWKNSQWRNLQ 309
           GTI+ +SDLDP+RW NS+WR+LQ
Sbjct: 61  GTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional Back     alignment and domain information
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory protein Back     alignment and domain information
>gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin Back     alignment and domain information
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 995
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.77
KOG06441113 consensus Uncharacterized conserved protein, conta 99.54
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.2
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.77
KOG35982220 consensus Thyroid hormone receptor-associated prot 89.61
KOG35982220 consensus Thyroid hormone receptor-associated prot 84.27
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=8.4e-36  Score=268.08  Aligned_cols=83  Identities=64%  Similarity=1.097  Sum_probs=81.7

Q ss_pred             HHHHHhcCCcEEEEEcCCCCCCccccchHhHHHHHhcccccCceeeeeeeeccCcccceeeEEEEeccCCCCCCCCCCcc
Q 001931          227 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWR  306 (995)
Q Consensus       227 Aahaaat~~~FtV~Y~PRas~sEFVVp~~kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR  306 (995)
                      |+|||+++++|+|+||||++++|||||++||++||+++|++||||||.||+||+++++|+|||+||+++||+|||+|+||
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~WR   80 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKWR   80 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cee
Q 001931          307 NLQ  309 (995)
Q Consensus       307 ~Lq  309 (995)
                      |||
T Consensus        81 ~Lq   83 (83)
T PF06507_consen   81 MLQ   83 (83)
T ss_pred             cCc
Confidence            996

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query995
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 2e-07
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 100 FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRG 159
            F K +T SD        +P+  AEK FP    ++      +   D++   W FR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72
Query: 160 QPKRHLLTTGWSVFVSTKRLFAGDSVLFIRD--EKSQLLLG 198
             + ++LT GWS FV  K L AGD V F R   +  QL +G
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 113
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query995
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 4e-43
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-10
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-09
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-09
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
3ghg_B461 Fibrinogen beta chain; triple-stranded coiled coil 9e-06
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 2e-05
3lj5_A725 Portal protein, protein GP1; DNA ejection, molecul 4e-05
1yvl_A 683 Signal transducer and activator of transcription 1 2e-04
1yvl_A 683 Signal transducer and activator of transcription 1 7e-04
3ghg_C411 Fibrinogen gamma chain; triple-stranded coiled coi 4e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  152 bits (384), Expect = 4e-43
 Identities = 39/125 (31%), Positives = 53/125 (42%)

Query: 92  KQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTW 151
              R     F K +T SD        +P+  AEK FP    ++      +   D++   W
Sbjct: 5   SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVW 64

Query: 152 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSS 211
            FR+ Y    + ++LT GWS FV  K L AGD V F R       L I   +R    L +
Sbjct: 65  RFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDA 124

Query: 212 SVISS 216
           S  SS
Sbjct: 125 SGPSS 129
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Length = 461 Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531 Back     alignment and structure
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725 Back     alignment and structure
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 Back     alignment and structure
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 Back     alignment and structure
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query995
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.96
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.79
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.65
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 96.95
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 96.08
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 94.93
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 89.49
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.96  E-value=1.6e-29  Score=239.88  Aligned_cols=113  Identities=31%  Similarity=0.511  Sum_probs=104.6

Q ss_pred             CCCCceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeecccchhh
Q 001931           94 NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVF  173 (995)
Q Consensus        94 ~~~~~~sF~KtLTaSDVs~~GrfsVPKr~AE~~FPpLD~s~~~PsQeLvakDlhGkeW~FRhiyRgqprRhlLTtGWS~F  173 (995)
                      .++..++|+|+||+|||+++++|+||+++|++|||.++.+..+++++|.++|.+|++|+|||+||+++++|+|++||+.|
T Consensus         7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F   86 (130)
T 1wid_A            7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF   86 (130)
T ss_dssp             -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred             CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence            46678899999999999999999999999999999999876678899999999999999999999999999999999999


Q ss_pred             hccCCCCCCCeEEEEecC--CCcEEEEEEeccCCC
Q 001931          174 VSTKRLFAGDSVLFIRDE--KSQLLLGIRRANRQQ  206 (995)
Q Consensus       174 VreKkLvaGDsVVF~R~e--~GeL~VGIRRA~r~~  206 (995)
                      |++|+|++||+|+|+|.+  +++|+|+|||+.+..
T Consensus        87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            999999999999999986  467999999998754
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 995
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 6e-39
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-25
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 4e-15
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 0.004
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  138 bits (349), Expect = 6e-39
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 95  RQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFR 154
           R     F K +T SD        +P+  AEK FP    ++      +   D++   W FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 155 HIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKS--QLLLGIRRANRQQP 207
           + Y    + ++LT GWS FV  K L AGD V F R      QL +G +  +    
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 115
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query995
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.94
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.79
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.56
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=1.9e-27  Score=217.83  Aligned_cols=109  Identities=31%  Similarity=0.513  Sum_probs=102.1

Q ss_pred             CceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeecccchhhhcc
Q 001931           97 PTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVST  176 (995)
Q Consensus        97 ~~~sF~KtLTaSDVs~~GrfsVPKr~AE~~FPpLD~s~~~PsQeLvakDlhGkeW~FRhiyRgqprRhlLTtGWS~FVre  176 (995)
                      ..++|.|+||+|||+++|||+||+++|++|||+++.....++++|.++|.+|++|+|+|+||+..++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHH
Confidence            35799999999999999999999999999999999988888999999999999999999999888899999999999999


Q ss_pred             CCCCCCCeEEEEec--CCCcEEEEEEeccCC
Q 001931          177 KRLFAGDSVLFIRD--EKSQLLLGIRRANRQ  205 (995)
Q Consensus       177 KkLvaGDsVVF~R~--e~GeL~VGIRRA~r~  205 (995)
                      ++|++||+|+|+|+  ++++|+|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             cCCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence            99999999999997  467999999998753
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure