Citrus Sinensis ID: 001946

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990--

MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEKSVSRTSSSLREGFSREASLDKNGGESVSALMNEEYAEEAESASFTDDDVSSRSSPTVSSTVEMNNGFPQNEEIRSVTLSDSAEGFKKEQALASKSHPDKSNIKAQISPHEHLKGGSSRSSSIDLSSELEGHVNCHAPVSNSPNSSPFISKKVIAHAVQSSSSFISNENGKEEDSPCLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIGSSNSSDSQVNGENDANGKTWRMGKVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQKEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALDSEVSPF

ccccccccccccccEEEEEEEEEEEEcccccccccccccEEEEEEEcccccccccccccccccccccccEEEEcccEEEEEEEEEEcccccccccccccccEEEEEEcccccccccEEEEEEccccccccccccEEccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccHHHcccHHHHccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccccc

cEEEEEEcccccccEEEEEEEEEEEccccccccccHcHHHEEEEEcccccccccccEEcccccccccccEEEEEccEEEEEEEEEccccccccccHHHHHHEEEEccccHHHHHcHccEEEEEHHHHcEEEEcEEEccccccccccccccccEEEEEEEEccccccccccccHHHcccccccccccccEHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccEEccccccccccccccccccccccEccHcccHHHcccccEEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccHHcccccccccccHHHHHHccccccccccccccccccccccEccccccccccccccccccccccccccccccccEccccccccccccccEHEEcccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHEEEHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHcccHHHHHHHcccccHHHHHHHHHcccccccccccccHHHHHHHHcccccc

mvlglsaknrkeasiHVDYQihiqdikpwppsqslRSLRSVMIQWqngdrnsgstktvgpslgsvigegkiefNESFRLRVTLLRDMNVKNKDADTFLKNClefnlyeprrdkTQLLATATIDladygivketlsvnapmnskrsfrntaqpvlfikiqpaeksvsrtssslregfsreasldknggeSVSALMNEEYaeeaesasftdddvssrssptvsstvemnngfpqneeirsvtlsdsaegfkKEQAlaskshpdksnikaqisphehlkggssrsssidlsseleghvnchapvsnspnsspfiSKKVIAHAVQssssfisnengkeedspclrgndheNLAEVQrklptgkpaisvnaEQNCEEVASNNFSAKLAslnekhpliqeigssnssdsqvngendangktwrmgkvsmeegaylDDYCNDFVKYRMEQEDNGLEREIFEkgrhsagdeplnfcsrnatrnqvslgsdspspiredpvnfgtkrnllksdrlknvrsvrsssdiarsngnqkeakengvlgdapnragsfgsperkdykvyprdtrsAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEhgssmskvhapARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKAcgndvprltfWLSNSIVLRAIISQAtgrleqpfaagqslernssqrgnnnitsplkwkesasrkkdnrnvmrgsfddwedphtlpSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERvmdrdigscsrknlertsssgdqeqINFSLDHWKKAFKDACERLcpvrarghecgclPLLARLIMEQCVARLDVAMFNAILREsadeiptdpvsdpisdskvlpipagkssfgaGAQLKNAIGNWSRWLSdlfgmddddsldnenehdadderqdssfkSFHLLNALSDLmmlpkdlllsrsirkevcptfgaplikrvldnfcpdefcpdpiprVVLEAldsevspf

mvlglsaknrkeaSIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWqngdrnsgstktvgpslgsvigegkiefnESFRLRVTLLRdmnvknkdadtFLKNCLEFNlyeprrdkTQLLATATIDLADYGIVKETlsvnapmnskrsfrntAQPVlfikiqpaeksvsrtssslregfsreasldknggeSVSALMNEEYAEEAesasftdddvssrssptvsstvemnngfpqneeIRSVTLSDSAEGFKKEQalaskshpdksnikaqisphehlkggsSRSSSIDLSSELEGHVNCHAPVSNSPNSSPFISKKVIAHAVQSsssfisnengkEEDSPCLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEigssnssdsqvngendangktwrmgkVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNqvslgsdspspiredpvnfgtkrnllksdrlknvrsvrsssdiarsngnqkeakengvlgdapnragsfgsperkdykvypRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGqslernssqrgnnnitsplkwkesasrkkdnrnvmrgsfddwedphtLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCSrknlertsssgdqeqINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILREsadeiptdpvsdpisDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHdadderqdssfKSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALDSEVSPF

MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEKSVSRTSSSLREGFSREASLDKNGGESVSALMNeeyaeeaesasFtdddvssrssptvsstvEMNNGFPQNEEIRSVTLSDSAEGFKKEQALASKSHPDKSNIKAQISPHehlkggssrsssidlsselegHVNCHAPVSNSPNSSPFISKKVIAHAVQSSSSFISNENGKEEDSPCLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIGSSNSSDSQVNGENDANGKTWRMGKVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQKEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQsrrasaarsaVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWlsdlfgmddddsldNENEHDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALDSEVSPF

**************IHVDYQIHIQDIKPW***********VMIQW*****************GSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVN*************QPVLFIKI*********************************************************************************************************************************************************************************************************************************************************************KVSMEEGAYLDDYCNDFVKYRM*************************************************************************************************************************************INMLETELREAAAIEASLYSVVAE************RRLSRLYLHACKEDFQ*****AARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATG********************************************************LPSALEKVEAWIFSRIVESIWWQTLTPH********************************INFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILR******************************GAGAQLKNAIGNWSRWLSDLFG*************************SFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEA********

**************IHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQN**************LGSVIGEGKIEFNESFRLRVT*****************NCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNA****************FI*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ARRLSRLYLHACKED**********SAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQA***********************************************GSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQ******************************INFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDD*********************KSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALDSEV*PF

********NRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPA***************SREASLDKNGGESVSALMNEE***************************EMNNGFPQNEEIRSVTLSDSAEGFKKE*************IKAQIS*******************ELEGHVNCHAPVSNSPNSSPFISKKVIAHAV******************CLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIG**************ANGKTWRMGKVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQKEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAE*********APARRLSRLYLHACKEDF***********VSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKW*********NRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCS*************EQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLD*************SSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALDSEVSPF

MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNG*****STKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEK***********************************AE**E**SF****************************************************************************************************************************************************************QNCEEVASNNFSAKLASLNEKHPLIQEIGS********************************************************************************************************************************K******VLGD***************YKVYPRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATG*********************************************GSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHM************************S*****QINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMD********************SFKSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALDSE****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEKSVSRTSSSLREGFSREASLDKNGGESVSALMNEEYAEEAESASFTDDDVSSRSSPTVSSTVEMNNGFPQNEEIRSVTLSDSAEGFKKEQALASKSHPDKSNIKAQISPHEHLKGGSSRSSSIDLSSELEGHVNCHAPVSNSPNSSPFISKKVIAHAVQSSSSFISNENGKEEDSPCLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIGSSNSSDSQVNGENDANGKTWRMGKVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQKEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALDSEVSPF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		992
225452142		1114	PREDICTED: uncharacterized protein LOC10	0.985	0.877	0.625	0.0
356571503		1057	PREDICTED: uncharacterized protein LOC10	0.930	0.873	0.546	0.0
356560501		1082	PREDICTED: uncharacterized protein LOC10	0.921	0.844	0.531	0.0
356573956		1054	PREDICTED: uncharacterized protein LOC10	0.946	0.890	0.531	0.0
359473569		1048	PREDICTED: uncharacterized protein LOC10	0.945	0.895	0.502	0.0
255536959		1002	conserved hypothetical protein [Ricinus	0.586	0.580	0.649	0.0
147861259		1060	hypothetical protein VITISV_042522 [Viti	0.930	0.870	0.473	0.0
296090238		911	unnamed protein product [Vitis vinifera]	0.480	0.523	0.734	0.0
449518035		988	PREDICTED: uncharacterized protein LOC10	0.491	0.493	0.657	0.0
449455954		988	PREDICTED: uncharacterized protein LOC10	0.491	0.493	0.657	0.0

>gi\|225452142\|ref\|XP_002270234.1\| PREDICTED: uncharacterized protein LOC100266440 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1020 (62%), Positives = 743/1020 (72%), Gaps = 42/1020 (4%)

Query: 1    MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGP 60
            MVLG+   NRK  S+HVDY IHIQ+IKPWPPSQSLRS R+V+IQW++GDR SGST +V P
Sbjct: 1    MVLGVRTNNRKSGSVHVDYLIHIQEIKPWPPSQSLRSQRAVLIQWEHGDRTSGSTSSVIP 60

Query: 61   SLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT---QLL 117
            +LGS IG+GKIEFNESFRL VTL+R+  +K+ DADTF KNCL+FNLYEPRRDKT   QLL
Sbjct: 61   ALGSGIGDGKIEFNESFRLSVTLVREFALKSGDADTFHKNCLDFNLYEPRRDKTVRGQLL 120

Query: 118  ATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEKSVSRTSSSLREGFS 177
             TA +DLADYGI++E  S++ PMN KRSFRNTAQPVLF+KIQP +K   RTSSS R+   
Sbjct: 121  GTAILDLADYGIIREISSISIPMNCKRSFRNTAQPVLFLKIQPVDKG--RTSSSSRDNLL 178

Query: 178  REASLDKNGGESVSALMNEEYAEEAESASFTDDDVSSRSSPTVSSTVEMNNGFP-QNEEI 236
            +EASL K GGESVSAL+NEEYAEEAE  S TDDDVSS SS  VS+ V+ N G P QNE+ 
Sbjct: 179  KEASLHKTGGESVSALINEEYAEEAEITSSTDDDVSSHSSLAVSTAVQSNGGLPHQNEKY 238

Query: 237  RSVTLS---------------DSAEGFKKEQALASKSHPDKSNIKAQISPHEHLKGGSSR 281
                L+               ++  G  +EQA  SK     S+    I PH  L+G SS 
Sbjct: 239  TKFLLNGKLAFEFQNGSERVNNNTGGGNEEQASDSKLRLTNSDTTPIIEPHPSLEGNSSC 298

Query: 282  SSSIDLSSELEGHVNCHAPVSNSPNSSPFISKKVIAHAVQSSSSFISNENGKEEDSPCLR 341
             SSIDLSS+L   VN H  + +SP SS    K+++  +  SSSS I  E  +EE +  +R
Sbjct: 299  MSSIDLSSDLGSPVNGHPSLPDSPESSTSTPKRILTLSSHSSSSSIVYERMEEESNTSIR 358

Query: 342  GNDHENLA-EVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIGSSNS 400
             NDHE+L  E   K+P+GK     NA+Q+  E  SN F AK+AS       ++++  +NS
Sbjct: 359  SNDHEDLPREAHEKVPSGKTETGGNAKQSTGEKISNGFLAKVASPGINSHAVEKLSFANS 418

Query: 401  SDSQVNGENDANGKTWRMGKVSMEEGAYLDDYCNDFVKYR--MEQEDNGLEREIFEKGRH 458
            ++SQ N E         + K  +EEG   D   N  ++ R   EQ++   ERE  E+  H
Sbjct: 419  ANSQANREEYEEEVRRPI-KNGLEEGVTTD---NGPMEDRDEKEQKEYRQERENLEEKEH 474

Query: 459  SAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDI 518
            S  +EP N  S +ATR Q S GSD+   +     N   K N+L SDRLK+V+SVRSSSD 
Sbjct: 475  SIEEEPSNRVSLDATRKQASSGSDT---LSFSWGNHELKSNILSSDRLKHVKSVRSSSDS 531

Query: 519  ARSN----GNQ--KEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLE 572
            ARSN    GNQ  +EAKE GVLGD  N A  F    RKD  +Y  +TR+  +E KIQQLE
Sbjct: 532  ARSNNLVGGNQFIEEAKEVGVLGDRQNGARGFIGSGRKDTIIY-TETRNTFSERKIQQLE 590

Query: 573  HKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASA 632
             KI MLE ELREAAAIEA+LYSVVAEHGSSM+KVHAPARRLSR+YLHAC+E  QSRRASA
Sbjct: 591  DKIKMLEGELREAAAIEAALYSVVAEHGSSMNKVHAPARRLSRMYLHACRESSQSRRASA 650

Query: 633  ARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQR 692
            ARSAVSGL LVAKACGNDVPRLTFWLSN++VLRAIISQA G   Q  +AG S ERN   +
Sbjct: 651  ARSAVSGLALVAKACGNDVPRLTFWLSNAVVLRAIISQAIGIPRQKLSAGSSNERNGIGK 710

Query: 693  GNNNITSPLKWKESASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQ 752
            GNN   SPLKWKE     K+N+N    S  DW+DP+TL SALEK+EAWIFSRI+ES+WWQ
Sbjct: 711  GNNQRLSPLKWKEFPPSSKENKNA--SSLGDWKDPYTLISALEKLEAWIFSRIIESVWWQ 768

Query: 753  TLTPHMQSAAERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVR 812
            TLTPHMQSAA + +  D  S SRK+  RTS S DQEQ+NF+LD WKKAFKDACERLCPVR
Sbjct: 769  TLTPHMQSAAMKEIYGDTDSDSRKSYGRTSGSSDQEQVNFALDLWKKAFKDACERLCPVR 828

Query: 813  ARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAG 872
            A GHECGCLP+LA L+MEQCV RLDVAMFNAILRES DEIPTDPVSDPISDSKVLPIPAG
Sbjct: 829  AGGHECGCLPVLASLVMEQCVVRLDVAMFNAILRESVDEIPTDPVSDPISDSKVLPIPAG 888

Query: 873  KSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHDADDERQDSSFKSFHLLNALS 932
            KSSFGAGAQLKN IGNWSRWL+DLFGMD+DD L+  N+ D +DERQD  FKSFHLLNALS
Sbjct: 889  KSSFGAGAQLKNVIGNWSRWLTDLFGMDEDDLLEEGND-DIEDERQDVLFKSFHLLNALS 947

Query: 933  DLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALDSEVSPF 992
            DLMMLPKD+LLSRSIRKEVCPTFGAPLI+RVLDNF PDEFCPDPIP VV EALDSE  PF
Sbjct: 948  DLMMLPKDMLLSRSIRKEVCPTFGAPLIRRVLDNFVPDEFCPDPIPGVVFEALDSE-DPF 1006

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356571503\|ref\|XP_003553916.1\| PREDICTED: uncharacterized protein LOC100783487 [Glycine max]	Back alignment and taxonomy information

>gi\|356560501\|ref\|XP_003548530.1\| PREDICTED: uncharacterized protein LOC100775183 [Glycine max]	Back alignment and taxonomy information

>gi\|356573956\|ref\|XP_003555120.1\| PREDICTED: uncharacterized protein LOC100818584 [Glycine max]	Back alignment and taxonomy information

>gi\|359473569\|ref\|XP_002265426.2\| PREDICTED: uncharacterized protein LOC100254476 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255536959\|ref\|XP_002509546.1\| conserved hypothetical protein [Ricinus communis] gi\|223549445\|gb\|EEF50933.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|147861259\|emb\|CAN81894.1\| hypothetical protein VITISV_042522 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296090238\|emb\|CBI40057.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449518035\|ref\|XP_004166049.1\| PREDICTED: uncharacterized protein LOC101224875 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449455954\|ref\|XP_004145715.1\| PREDICTED: uncharacterized protein LOC101208084 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		992
TAIR\|locus:2082319		921	AT3G01810 "AT3G01810" [Arabido	0.510	0.549	0.554	3.2e-210
TAIR\|locus:2169293		848	AT5G43230 "AT5G43230" [Arabido	0.264	0.308	0.579	1.7e-143
TAIR\|locus:2169349		723	AT5G06930 [Arabidopsis thalian	0.253	0.347	0.485	2e-90
TAIR\|locus:2053834		669	AT2G42320 "AT2G42320" [Arabido	0.316	0.469	0.507	2.8e-84

TAIR\|locus:2082319 AT3G01810 "AT3G01810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1385 (492.6 bits), Expect = 3.2e-210, Sum P(2) = 3.2e-210
 Identities = 292/527 (55%), Positives = 357/527 (67%)

Query:   466 NFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQ 525
             N  S+ A+  Q + G     P++ D  N     +   S   +++ S +    I   +   
Sbjct:   309 NESSKLASNGQHNNGEAKSVPLQID--NLSENASPRASVNSQDLTSDQEPESIVEKSRKV 366

Query:   526 KEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLEHKINMLETELREA 585
             K  + +  +  + +R   F   ERK+ KVYP  T     ESKI+ LE ++  LE EL EA
Sbjct:   367 KSVRSSLDINRSNSRLSLFS--ERKEAKVYPNSTHDTTLESKIKNLESRVKKLEGELCEA 424

Query:   586 AAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQXXXXXXXXXXVSGLVLVAK 645
             AAIEA+LYSVVAEHGSS SKVHAPARRL RLYLHAC+E             VSGLVLVAK
Sbjct:   425 AAIEAALYSVVAEHGSSSSKVHAPARRLLRLYLHACRETHLSRRANAAESAVSGLVLVAK 484

Query:   646 ACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKE 705
             ACGNDVPRLTFWLSN+IVLR IIS  +   E P +AG    +  ++R     +S LKWK+
Sbjct:   485 ACGNDVPRLTFWLSNTIVLRTIISDTSAEEELPVSAGPGPRKQKAERETEKRSS-LKWKD 543

Query:   706 SASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAE-- 763
             S   KKD +     SF  W+DP T  +ALEKVEAWIFSR+VESIWWQTLTP MQS+A   
Sbjct:   544 SPLSKKDIK-----SFGAWDDPVTFITALEKVEAWIFSRVVESIWWQTLTPRMQSSAAST 598

Query:   764 RVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPL 823
             R  D+  GS S+K   RT SS +QE  +FSL+ WKKAF++A ERLCP+R  GHECGCLP+
Sbjct:   599 REFDKGNGSASKKTFGRTPSSTNQELGDFSLELWKKAFREAHERLCPLRGSGHECGCLPI 658

Query:   824 LARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLK 883
              ARLIMEQCVARLDVAMFNAILR+S D  PTDPVSDPI+D +VLPIP+  SSFG+GAQLK
Sbjct:   659 PARLIMEQCVARLDVAMFNAILRDSDDNFPTDPVSDPIADLRVLPIPSRTSSFGSGAQLK 718

Query:   884 NAIGNWSRWXXXXXXXXXXXXXXNENEHDADDERQ--DSSFKSFHLLNALSDLMMLPKDL 941
             N+IGNWSRW              ++ + D+ DE    + SFK+F+LL ALSDLMMLPKD+
Sbjct:   719 NSIGNWSRWLTDLFGI-------DDEDDDSSDENSYVEKSFKTFNLLKALSDLMMLPKDM 771

Query:   942 LLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALDSE 988
             LL+ S+RKEVCP FGAPLIKRVL+NF PDEFCPDP+P  VL++L+SE
Sbjct:   772 LLNSSVRKEVCPMFGAPLIKRVLNNFVPDEFCPDPVPDAVLKSLESE 818

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR\|locus:2169293 AT5G43230 "AT5G43230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2169349 AT5G06930 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2053834 AT2G42320 "AT2G42320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020541001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (900 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		992
pfam10358		142	pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1	2e-13

>gnl\|CDD\|220715 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 proteins	Back alignment and domain information

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 19/144 (13%)

Query: 17  VDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNES 76
             + + I +++  P          + ++W+ GD+   S  T      +++  G+  +NE 
Sbjct: 7   FQFDLSIHELQNVPLVNG-----ELFVKWKRGDKKGNSGTTSK----ALVNNGRAVWNEE 57

Query: 77  FRLRVTLLRDMNVKNKDADTFLKNCLEFNLY-EPRRDKTQLLATATIDLADYGIVKETLS 135
           F +  TL  D     K    F    L F +Y   ++ K ++L  A IDLA+Y   KE  +
Sbjct: 58  FSIPCTLFVD-----KKGGKFEPKLLTFVVYKVTKKGKKKVLGKADIDLAEYANSKEPTT 112

Query: 136 VNAPMNSKRSFRNTAQPVLFIKIQ 159
               +             L I I 
Sbjct: 113 RRLLLKKCSK----KNATLSITIS 132

This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		992
PF10358		143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	99.58
PF01843		105	DIL: DIL domain; InterPro: IPR018444 Dilute encode	98.35
cd08373		127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	85.71
cd04022		127	C2A_MCTP_PRT_plant C2 domain first repeat found in	85.58
cd00275		128	C2_PLC_like C2 domain present in Phosphoinositide-	84.82
cd08682		126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	83.82
cd08690		155	C2_Freud-1 C2 domain found in 5' repressor element	82.46
cd08385		124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	82.46
cd08393		125	C2A_SLP-1_2 C2 domain first repeat present in Syna	81.46
cd04011		111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	80.39

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []	Back alignment and domain information

Probab=99.58  E-value=1.3e-14  Score=132.92  Aligned_cols=129  Identities=25%  Similarity=0.530  Sum_probs=104.6

Q ss_pred             ceeEEEEEEEeeeecCCCCcccccccceeEEEeecCCCC--CCCcccccCCCcccccCceEEeecceeeeEEEEeecccC
Q 001946           13 ASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRN--SGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVK   90 (992)
Q Consensus        13 ~sv~vdy~IhiqeIkPWPpSqSlrSlrSVllqWENGd~~--SGsT~~V~PSlgs~vG~GkiEFnEsFrL~vtl~~e~s~k   90 (992)
                      ..++++|.|+|++|..||+....     |.+.|.+|++.  +|.      +-...+.+|.+.|||.|.+++||+++.+. 
T Consensus         3 ~~~kf~~~l~i~~l~~~p~~~~~-----v~v~wkr~~~~~~~~~------t~~~~~~~~~v~w~e~~~~~~tl~~~~k~-   70 (143)
T PF10358_consen    3 KAVKFQFDLTIHELENLPSSNGK-----VFVKWKRGDKSKGSGT------TSRANVKNGKVQWNEEFSFPCTLYRDKKS-   70 (143)
T ss_pred             ceeeEEEEEEEEEeECcCCCCCE-----EEEEEEECCCCcccee------eeeeeccccEEEEeeEEEEEEEEEEcCCC-
Confidence            46899999999999999995444     99999999999  454      44466789999999999999999999222 


Q ss_pred             CCCcchhcccceeeeecccccccc-cccceeeeccccccccc-cceeeeeccccccccccCCCceEEEEeeec
Q 001946           91 NKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADYGIVK-ETLSVNAPMNSKRSFRNTAQPVLFIKIQPA  161 (992)
Q Consensus        91 g~~~~~F~KN~LEfnlye~RrdK~-QlLGtA~inLAd~gii~-e~~si~~p~n~krS~Rn~~qp~lyv~IqP~  161 (992)
                          ..|++..|+|.||.....+. +.||++.||||+|.-.. +..++..||.-+    ....+.|.|+|+-.
T Consensus        71 ----~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~  135 (143)
T PF10358_consen   71 ----KEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS  135 (143)
T ss_pred             ----CcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence                36999999999999854332 79999999999999995 788888888655    34456666666643

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains	Back alignment and domain information

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin	Back alignment and domain information

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)	Back alignment and domain information

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I	Back alignment and domain information

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)	Back alignment and domain information

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10	Back alignment and domain information

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2	Back alignment and domain information

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		992
2f6h_X		419	Myosin-2, type V myosin; mysoin V, cargo binding,	8e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Length = 419	Back alignment and structure

 Score = 76.8 bits (188), Expect = 8e-15
 Identities = 50/431 (11%), Positives = 122/431 (28%), Gaps = 94/431 (21%)

Query: 565 ESKIQQLEHKINMLETELREA--AAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACK 622
             ++ +L     +L  E+ E      E     V  +   S   V  PAR L  +     +
Sbjct: 6   NEELYRLLEDTEILNQEITEGLLKGFEVPDAGVAIQL--SKRDVVYPARILIIVLSEMWR 63

Query: 623 EDFQSRRASAARSAVSGLVLVAKACGND--VPRLTFWLSNSIVLRAIISQATGRLEQPFA 680
                +  S     ++ +  V      +  +P   FWL+N   L + +  A         
Sbjct: 64  FGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFA--------- 114

Query: 681 AGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAW 740
               L    ++    N  +  ++KE  S   + ++                   E +   
Sbjct: 115 ----LNSILTEETFKNGMTDEEYKEYVSLVTELKDD-----------------FEALSYN 153

Query: 741 IFSRIVESIWWQTLTPHMQSA--AERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWK 798
           I++  ++ +  + L     +A      +       +   L +  ++ ++  ++  L    
Sbjct: 154 IYNIWLKKLQ-KQLQKKAINAVVISESLPGFSAGETSGFLNKIFANTEEYTMDDILTF-- 210

Query: 799 KAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVS 858
                       +            +   ++   +  +D   FN ++             
Sbjct: 211 ---------FNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELI------------- 248

Query: 859 DPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHDADDERQ 918
                     +     S+  G QL   +     W                          
Sbjct: 249 ----------MKRNFLSWKRGLQLNYNVTRLEEW--------------------CKTHGL 278

Query: 919 DSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIP 978
               +    L   + L+ + K  +    I + +C +     +++++  +   ++   PIP
Sbjct: 279 TDGTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQVADY-ESPIP 337

Query: 979 RVVLEALDSEV 989
           + +L  +   V
Sbjct: 338 QEILRYVADIV 348

PyMOL of 2f6h

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		992
2f6h_X		419	Myosin-2, type V myosin; mysoin V, cargo binding,	98.97
3mmi_A		386	Myosin-4; globular tail, dilute domain, motor prot	98.63
1ugk_A		138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	89.02
2enp_A		147	B/K protein; C2 type 1,beta sandwich, structural g	87.02
3kwu_A		148	MUNC13-1; calcium binding protein, phospholipid bi	85.08
3f04_A		143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	84.27
3pyc_A		132	E3 ubiquitin-protein ligase smurf1; phospholipid b	84.15

>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=98.97  E-value=9.3e-10  Score=118.74  Aligned_cols=290  Identities=14%  Similarity=0.220  Sum_probs=184.8

Q ss_pred             ccccCchhhhhhHHHHHHhcccchhhhhHHHhhhccceEEEeecc-cCC-CCcchhhhhhHHHHHHHH--HHHhcCCCCC
Q 001946          603 MSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKAC-GND-VPRLTFWLSNSIVLRAII--SQATGRLEQP  678 (992)
Q Consensus       603 ~hKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKaC-GND-VpRLTFWlSN~iVLR~II--sqa~~~~~~~  678 (992)
                      .+-+-.||.=|-..-.|+.|.....++-+.--.++.++=-|.+.+ |+| +..|.|||||+.-|--.+  .|......  
T Consensus        44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~--  121 (419)
T 2f6h_X           44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTE--  121 (419)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhcc--
Confidence            455668888877666667776444443333333444443344445 467 588999999999999988  44431000  


Q ss_pred             CccccccccCcccCCCCCCCCccccccccccccccccccCCCCCCCCC----ccchHHHHhhhhhhhhhhhhhhhhhc--
Q 001946          679 FAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWED----PHTLPSALEKVEAWIFSRIVESIWWQ--  752 (992)
Q Consensus       679 ~~~~~~~~~ng~~~~~~~~~~~~~wk~~~~~k~~~~~~~~~~~~dW~d----~~tf~~ALekvEsWIFSRIVESVWWQ--  752 (992)
                                 ++..     .++                  ...+|.+    ...|...|+-+.-.||+.++..+-=.  
T Consensus       122 -----------~~~~-----~~~------------------~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~  167 (419)
T 2f6h_X          122 -----------ETFK-----NGM------------------TDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQ  167 (419)
T ss_dssp             -----------CC---------C------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------Cccc-----ccc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0000     000                  0112221    33456678888889999887554321  


Q ss_pred             -ccCcccccccccccccccCCccc-cccCCCCCCccccccchhHHHHHHHHHHHHHHccccCCCCCCCCchHHHHHHHHH
Q 001946          753 -TLTPHMQSAAERVMDRDIGSCSR-KNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIME  830 (992)
Q Consensus       753 -~lTPhMQs~~~~~~~~~~~s~s~-k~~~~~~~lgDq~Qg~fSI~LWK~AF~DA~eRLCP~Ra~ghECGCLpvLarlVME  830 (992)
                       .+.|-||.+..-  +  .....+ .++.+. ....  +...+++-=-+-|......|+       .|+==|.|.++++.
T Consensus       168 p~l~paIl~~~~~--~--~~~~~~~~~~~~k-~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fs  233 (419)
T 2f6h_X          168 KKAINAVVISESL--P--GFSAGETSGFLNK-IFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVT  233 (419)
T ss_dssp             HHHHHHHTTSCSS--T--TTTC------------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHH
T ss_pred             HHHHHHHhCcccc--c--ccccccccccccc-cccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHH
Confidence             233444433211  0  000000 011111 1111  112333333333344444332       34455899999999


Q ss_pred             HHHHHhHHHHHHHHhcccCCCCCCCCCCCCCCCCcccccCCCCccccchhhhhhhhhhhHHHHhhhcCCCCCCCcccCCC
Q 001946          831 QCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENE  910 (992)
Q Consensus       831 qcVaRLDVAMFNAILRESa~eiPTDPiSDPI~D~kVLPIPaG~lSFGaGAQLKnaIgnWSRwLtDlfGid~dds~~~~~~  910 (992)
                      |+..=+++-+||.||-.                       ++-.+|-.|+|+|.-|+..-.|+... |+.          
T Consensus       234 Qlf~~In~~lFN~LL~r-----------------------~~~cs~s~G~qIr~nls~Le~W~~~~-~l~----------  279 (419)
T 2f6h_X          234 TLLNYVDAICFNELIMK-----------------------RNFLSWKRGLQLNYNVTRLEEWCKTH-GLT----------  279 (419)
T ss_dssp             HHHHHHHHHHHHHHHTC-----------------------SSCCCHHHHHHHHHHHHHHHHHHHHT-TCT----------
T ss_pred             HHHHHHHHHHHHHHhcc-----------------------CcccchhhHHHHHhhHHHHHHHHHHc-CCh----------
Confidence            99999999999999852                       23589999999999999999999987 331          


Q ss_pred             CCccccccCCccchhhhhHhhhcccccchhhccCcccccccCCCCChhHHHHHhhccCCCCCCCCCCChHHHHhhc
Q 001946          911 HDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEFCPDPIPRVVLEALD  986 (992)
Q Consensus       911 ~~~~~~~~~~~~k~F~lLnalSDLlMLPKDML~d~SiRKEVCPs~~lpLIkRIL~NF~PDEFcPDPVP~~VlEALn  986 (992)
                               .....+.-|+.++.||.++|.-+.|-....++||.++..=|.|||..|.||+| .+|||+.|+.++.
T Consensus       280 ---------~a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~-e~~v~~~~i~~v~  345 (419)
T 2f6h_X          280 ---------DGTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQVADY-ESPIPQEILRYVA  345 (419)
T ss_dssp             ---------THHHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHCCCCTT-SCCCCHHHHHHHH
T ss_pred             ---------hHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhCCCccC-CCCCCHHHHHHHH
Confidence                     01235788999999999999988888888999999999999999999999999 9999999998875

PyMOL of 2f6h

>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}	Back alignment and structure

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*	Back alignment and structure

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*	Back alignment and structure

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		992
d1rlwa_		126	Domain from cytosolic phospholipase A2 {Human (Hom	89.47
d1wfma_		138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	82.31
d2ep6a1		126	Multiple C2 and transmembrane domain-containing pr	81.69
d1dqva2		145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	81.2

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.25  Score=41.38  Aligned_cols=101  Identities=17%  Similarity=0.137  Sum_probs=59.5

Q ss_pred             EEEEeeeecCCCCcccc--cc-cce-eEEEeecCC-CCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCC
Q 001946           19 YQIHIQDIKPWPPSQSL--RS-LRS-VMIQWQNGD-RNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKD   93 (992)
Q Consensus        19 y~IhiqeIkPWPpSqSl--rS-lrS-VllqWENGd-~~SGsT~~V~PSlgs~vG~GkiEFnEsFrL~vtl~~e~s~kg~~   93 (992)
                      +.|.|.+-+-+|.....  -+ .-. |.++- +|+ .....|.++--+       ..-.|||.|.+++.           
T Consensus         5 l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l-~~~~~~~~~T~~~~~t-------~nP~wne~f~f~i~-----------   65 (126)
T d1rlwa_           5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFI-STTPDSRKRTRHFNND-------INPVWNETFEFILD-----------   65 (126)
T ss_dssp             EEEEEEEEESCCSCHHHHHHCCCCEEEEEEC-TTSTTCCEECCCCTTC-------SSCEEEEEEEEEEC-----------
T ss_pred             EEEEEEEccCCCCccccccCCCCCcEEEEEE-CCcccceeEeeecCCC-------ccceeceeeeeccc-----------
Confidence            45677777777753221  11 111 44444 332 233444443222       23479999988761           


Q ss_pred             cchhcccceeeeecccccccccccceeeeccccccccccceeeeeccc
Q 001946           94 ADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMN  141 (992)
Q Consensus        94 ~~~F~KN~LEfnlye~RrdK~QlLGtA~inLAd~gii~e~~si~~p~n  141 (992)
                        .-+...|+|.+|+-.+-+-++||.+.|+|+++ ...+...+.+||+
T Consensus        66 --~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l-~~~~~~~~~~~L~  110 (126)
T d1rlwa_          66 --PNQENVLEITLMDANYVMDETLGTATFTVSSM-KVGEKKEVPFIFN  110 (126)
T ss_dssp             --TTSCCEEEEEEEECCSSCCEEEEEEEEEGGGS-CTTCEEEEEEEET
T ss_pred             --CcccCcEEEEEEECCCCCCCeEEEEEEEHHHc-cCCCeEEEEEEcc
Confidence              12345799999986443338999999999997 2344555667763

PyMOL of d1rlwa_

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure