Citrus Sinensis ID: 001950
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 992 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XGW1 | 988 | Protein argonaute 10 OS=A | yes | no | 0.984 | 0.988 | 0.834 | 0.0 | |
| Q69VD5 | 979 | Protein argonaute PNH1 OS | yes | no | 0.873 | 0.885 | 0.834 | 0.0 | |
| O04379 | 1048 | Protein argonaute 1 OS=Ar | no | no | 0.879 | 0.832 | 0.775 | 0.0 | |
| Q7XSA2 | 1118 | Protein argonaute 1B OS=O | yes | no | 0.878 | 0.779 | 0.764 | 0.0 | |
| Q6EU14 | 1082 | Protein argonaute 1A OS=O | yes | no | 0.878 | 0.804 | 0.752 | 0.0 | |
| Q6K972 | 1011 | Protein argonaute 1C OS=O | no | no | 0.877 | 0.860 | 0.739 | 0.0 | |
| Q5Z5B2 | 1038 | Protein argonaute 1D OS=O | no | no | 0.878 | 0.839 | 0.739 | 0.0 | |
| Q851R2 | 1058 | Protein argonaute MEL1 OS | no | no | 0.867 | 0.813 | 0.589 | 0.0 | |
| Q9SJK3 | 997 | Protein argonaute 5 OS=Ar | no | no | 0.858 | 0.854 | 0.575 | 0.0 | |
| Q7Y001 | 1049 | Protein argonaute 12 OS=O | no | no | 0.856 | 0.810 | 0.542 | 0.0 |
| >sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1678 bits (4346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 837/1003 (83%), Positives = 894/1003 (89%), Gaps = 26/1003 (2%)
Query: 1 MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQELQNSKPHNQTSPPTK- 59
MPIRQMKDSSE HLVIKT N PKT QNGK PP + T ++
Sbjct: 1 MPIRQMKDSSETHLVIKTQPLKHHN-----PKTVQNGKIPPPSPSPVTVTTPATVTQSQA 55
Query: 60 --------NRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNG 111
NR RRR RGGRKSDQ DV MRPSSRP + + A V
Sbjct: 56 SSPSPPSKNRSRRRNRGGRKSDQGDVCMRPSSRPRKPPPPSQTTSSAVSVATAGEIVAVN 115
Query: 112 RSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVA 171
+ +MG K+ +FAPRPG+G +GTKCIVKANHF A+LP KDLNQYDVTITPEV+
Sbjct: 116 HQM---QMGV---RKNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVS 169
Query: 172 SRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGI-N 230
S++VNRAI+AELVRLYKESDLG RLPAYDGRKSLYTAGELPF WKEF +K+VDE DGI N
Sbjct: 170 SKSVNRAIIAELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIIN 229
Query: 231 GPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRS 290
GPKR R YKV IKF ARANMHHLG+FLAGKRAD PQEA+QILDIVLRELS KR+CP+GRS
Sbjct: 230 GPKRERSYKVAIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRS 289
Query: 291 FFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 350
FFSP I+TPQRLG+GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK
Sbjct: 290 FFSPDIKTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 349
Query: 351 DVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK 410
DVLS+ LSDSDRVKIKK LRGVKVEVTHR VRRKYRV+GLT+QPTREL+FPVD+N TMK
Sbjct: 350 DVLSKPLSDSDRVKIKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMK 409
Query: 411 SVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLK 470
SV+EYFQEMYGFTIQHTHLPCLQVGNQKKA+YLPMEACKIVEGQRYTKRLNE+QITALLK
Sbjct: 410 SVIEYFQEMYGFTIQHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLK 469
Query: 471 VTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKE 530
VTCQRPRDRENDIL+TVQ NAYDQD YAKEFG+ ISEKLASVEARILPAPWLKYHENGKE
Sbjct: 470 VTCQRPRDRENDILRTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKE 529
Query: 531 KDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNP 590
KDCLPQVGQWNMMNKKMINGMTVSRWAC+NFSRSVQE+VARGFCNEL QMC+VSGMEFNP
Sbjct: 530 KDCLPQVGQWNMMNKKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNP 589
Query: 591 EPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDL 650
EPVIPI++ARPDQVEKALKHVYH+SM+KTKGKELELLLAILPDNNGSLYGDLKRICET+L
Sbjct: 590 EPVIPIYSARPDQVEKALKHVYHTSMNKTKGKELELLLAILPDNNGSLYGDLKRICETEL 649
Query: 651 GIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGAD 710
G+ISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVL+DAISCRIPLVSDIPTIIFGAD
Sbjct: 650 GLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGAD 709
Query: 711 VTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSG 770
VTHPENGE+SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTW DPVRGTVSG
Sbjct: 710 VTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSG 769
Query: 771 GMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVT 830
GMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVT
Sbjct: 770 GMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVT 829
Query: 831 FIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSR 890
FI+VQKRHHTRLFANNHRD++STDRSGNILPGTVVD+KICHPTEFDFYLCSHAGIQGTSR
Sbjct: 830 FIVVQKRHHTRLFANNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSR 889
Query: 891 PAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPD- 949
PAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFY+EP+
Sbjct: 890 PAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEI 949
Query: 950 MQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 992
MQ+NGS G +TK+T VG+ GV+PLPALKENVKRVMFYC
Sbjct: 950 MQDNGS---PGKKNTKTT-TVGDVGVKPLPALKENVKRVMFYC 988
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Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for reliable formation of primary and axillary shoot apical meristems. Specifies leaf adaxial identity by repressing the miR165 and miR166 microRNAs in the embryonic shoot apex, in the shoot apical meristem (SAM) and leaf. Represses the microRNA miR398 which targets CCS1 chaperone mRNAs for translational inhibition. Acts as a negative regulator of AGO1 protein level. Like AGO1, is required for stem cell function and organ polarity. Unlike AGO1, is not subjected to small RNA-mediated repression itself. Essential for multiple processes in development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 | Back alignment and function description |
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| >sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 | Back alignment and function description |
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| >sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 | Back alignment and function description |
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| >sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 992 | ||||||
| 255552031 | 986 | eukaryotic translation initiation factor | 0.990 | 0.996 | 0.916 | 0.0 | |
| 224102121 | 996 | argonaute protein group [Populus trichoc | 0.998 | 0.994 | 0.906 | 0.0 | |
| 225432808 | 995 | PREDICTED: protein argonaute 10-like [Vi | 1.0 | 0.996 | 0.914 | 0.0 | |
| 449432654 | 984 | PREDICTED: protein argonaute 10-like [Cu | 0.987 | 0.995 | 0.902 | 0.0 | |
| 356575891 | 974 | PREDICTED: protein argonaute 10-like [Gl | 0.980 | 0.998 | 0.889 | 0.0 | |
| 356535942 | 974 | PREDICTED: protein argonaute 10-like [Gl | 0.980 | 0.998 | 0.882 | 0.0 | |
| 297737118 | 953 | unnamed protein product [Vitis vinifera] | 0.960 | 1.0 | 0.894 | 0.0 | |
| 356501789 | 972 | PREDICTED: protein argonaute 10-like [Gl | 0.974 | 0.994 | 0.855 | 0.0 | |
| 409127973 | 959 | AGO10A splice variant 2 [Solanum lycoper | 0.966 | 1.0 | 0.871 | 0.0 | |
| 297795033 | 983 | hypothetical protein ARALYDRAFT_917259 [ | 0.975 | 0.984 | 0.834 | 0.0 |
| >gi|255552031|ref|XP_002517060.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223543695|gb|EEF45223.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1879 bits (4868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 912/995 (91%), Positives = 942/995 (94%), Gaps = 12/995 (1%)
Query: 1 MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPH-QELQNSKPHNQTSPPTK 59
MPIRQMK+SSEQHLV+KTHLQNTMNQ QK K AQNGKGPP QE NSKP NQTSPPTK
Sbjct: 1 MPIRQMKESSEQHLVLKTHLQNTMNQPQKHHKIAQNGKGPPQSQETHNSKPQNQTSPPTK 60
Query: 60 NRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNGRSLCATEM 119
NRGRRRGRGGRKSDQ DVF RPSSRPCTV HKPVNQ L+ + NG GN +C EM
Sbjct: 61 NRGRRRGRGGRKSDQGDVFTRPSSRPCTVVHKPVNQAGGLLANAPNGNSGN---ICEMEM 117
Query: 120 G--FPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNR 177
G FPTSSKSL++A RPGYGQ+GTKCIVKANHFFAEL DKDLNQYDVTITPEVASRT NR
Sbjct: 118 GLGFPTSSKSLTYARRPGYGQLGTKCIVKANHFFAELLDKDLNQYDVTITPEVASRTTNR 177
Query: 178 AIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVRE 237
AIMAELVRLYKESDLGMRLPAYDGRKSLYT+GELPF WKEF IKLVDE DG+NGPKR RE
Sbjct: 178 AIMAELVRLYKESDLGMRLPAYDGRKSLYTSGELPFAWKEFIIKLVDEDDGVNGPKRERE 237
Query: 238 YKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIR 297
YKVVIKF ARANMHHLGQFLAGKRADAPQEALQILDIVLRELST+RYCP+GRSFFSP IR
Sbjct: 238 YKVVIKFVARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTRRYCPVGRSFFSPDIR 297
Query: 298 TPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTL 357
PQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIE VAQLLGKDVLSR L
Sbjct: 298 APQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIELVAQLLGKDVLSRPL 357
Query: 358 SDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417
SD+DR+KIKKALRGVKVEVTHRG VRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ
Sbjct: 358 SDADRIKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417
Query: 418 EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR 477
EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR
Sbjct: 418 EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR 477
Query: 478 DRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQV 537
DRENDILQTVQ NAYDQD YAKEFGIKISEKLASVEARILPAPWLKYH+ GKEKDCLPQV
Sbjct: 478 DRENDILQTVQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQV 537
Query: 538 GQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIH 597
GQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFC+ELAQMCQVSGMEFNPEPVIPI+
Sbjct: 538 GQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIY 597
Query: 598 NARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCC 657
+ARP+QVEKALKHVYH+SM+KTKGKELELLLAILPDNNG+LYGDLKRICETDLG+ISQCC
Sbjct: 598 SARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGTLYGDLKRICETDLGLISQCC 657
Query: 658 LTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENG 717
LTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENG
Sbjct: 658 LTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENG 717
Query: 718 EDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLL 777
EDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTW DPVRGTVSGGMIRDLL
Sbjct: 718 EDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLL 777
Query: 778 ISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKR 837
+SFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFI+VQKR
Sbjct: 778 VSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKR 837
Query: 838 HHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVL 897
HHTRLFANNHRDRSSTD+SGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVL
Sbjct: 838 HHTRLFANNHRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVL 897
Query: 898 WDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTD 957
WDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEP+MQ+NGS
Sbjct: 898 WDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQDNGS-- 955
Query: 958 GSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 992
T T+ TRA GE+GVRPLPALKENVKRVMFYC
Sbjct: 956 ----TGTRGTRAAGETGVRPLPALKENVKRVMFYC 986
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102121|ref|XP_002312555.1| argonaute protein group [Populus trichocarpa] gi|222852375|gb|EEE89922.1| argonaute protein group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225432808|ref|XP_002279408.1| PREDICTED: protein argonaute 10-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449432654|ref|XP_004134114.1| PREDICTED: protein argonaute 10-like [Cucumis sativus] gi|449523115|ref|XP_004168570.1| PREDICTED: protein argonaute 10-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356575891|ref|XP_003556070.1| PREDICTED: protein argonaute 10-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356535942|ref|XP_003536500.1| PREDICTED: protein argonaute 10-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297737118|emb|CBI26319.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356501789|ref|XP_003519706.1| PREDICTED: protein argonaute 10-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|409127973|gb|AFV15389.1| AGO10A splice variant 2 [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|297795033|ref|XP_002865401.1| hypothetical protein ARALYDRAFT_917259 [Arabidopsis lyrata subsp. lyrata] gi|297311236|gb|EFH41660.1| hypothetical protein ARALYDRAFT_917259 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 992 | ||||||
| TAIR|locus:2170897 | 988 | AGO10 "ARGONAUTE 10" [Arabidop | 0.984 | 0.988 | 0.831 | 0.0 | |
| UNIPROTKB|Q69VD5 | 979 | PHN1 "Protein argonaute PNH1" | 0.873 | 0.885 | 0.834 | 0.0 | |
| UNIPROTKB|Q851R2 | 1058 | MEL1 "Protein argonaute MEL1" | 0.870 | 0.816 | 0.589 | 1.1e-284 | |
| TAIR|locus:2057851 | 997 | AGO5 "ARGONAUTE 5" [Arabidopsi | 0.858 | 0.854 | 0.576 | 9.7e-270 | |
| UNIPROTKB|F1P3Z0 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.622 | 0.718 | 0.382 | 1.3e-191 | |
| UNIPROTKB|F1MG44 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.622 | 0.718 | 0.381 | 5.6e-191 | |
| UNIPROTKB|Q9H9G7 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.622 | 0.718 | 0.381 | 5.6e-191 | |
| UNIPROTKB|F1LUS2 | 854 | Eif2c3 "Protein Eif2c3" [Rattu | 0.622 | 0.723 | 0.379 | 9.1e-191 | |
| MGI|MGI:2446634 | 860 | Ago3 "argonaute RISC catalytic | 0.622 | 0.718 | 0.381 | 1.2e-190 | |
| UNIPROTKB|Q5ZLG4 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.622 | 0.718 | 0.381 | 1.9e-190 |
| TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 4304 (1520.1 bits), Expect = 0., P = 0.
Identities = 834/1003 (83%), Positives = 890/1003 (88%)
Query: 1 MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQE--LQNSKPHNQT---- 54
MPIRQMKDSSE HLVIKT N PKT QNGK PP + + P T
Sbjct: 1 MPIRQMKDSSETHLVIKTQPLKHHN-----PKTVQNGKIPPPSPSPVTVTTPATVTQSQA 55
Query: 55 ---SPPTKNXXXXXXXXXXKSDQNDVFMRPSSRPCTVAHKPVNQVCDLXXXXXXXXXXXX 111
SPP+KN KSDQ DV MRPSSRP P +Q
Sbjct: 56 SSPSPPSKNRSRRRNRGGRKSDQGDVCMRPSSRPRKPP--PPSQTTSSAVSVATAGEIVA 113
Query: 112 RSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVA 171
+ +MG K+ +FAPRPG+G +GTKCIVKANHF A+LP KDLNQYDVTITPEV+
Sbjct: 114 VNH-QMQMGV---RKNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVS 169
Query: 172 SRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGI-N 230
S++VNRAI+AELVRLYKESDLG RLPAYDGRKSLYTAGELPF WKEF +K+VDE DGI N
Sbjct: 170 SKSVNRAIIAELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIIN 229
Query: 231 GPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRS 290
GPKR R YKV IKF ARANMHHLG+FLAGKRAD PQEA+QILDIVLRELS KR+CP+GRS
Sbjct: 230 GPKRERSYKVAIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRS 289
Query: 291 FFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 350
FFSP I+TPQRLG+GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK
Sbjct: 290 FFSPDIKTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 349
Query: 351 DVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK 410
DVLS+ LSDSDRVKIKK LRGVKVEVTHR VRRKYRV+GLT+QPTREL+FPVD+N TMK
Sbjct: 350 DVLSKPLSDSDRVKIKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMK 409
Query: 411 SVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLK 470
SV+EYFQEMYGFTIQHTHLPCLQVGNQKKA+YLPMEACKIVEGQRYTKRLNE+QITALLK
Sbjct: 410 SVIEYFQEMYGFTIQHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLK 469
Query: 471 VTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKE 530
VTCQRPRDRENDIL+TVQ NAYDQD YAKEFG+ ISEKLASVEARILPAPWLKYHENGKE
Sbjct: 470 VTCQRPRDRENDILRTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKE 529
Query: 531 KDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNP 590
KDCLPQVGQWNMMNKKMINGMTVSRWAC+NFSRSVQE+VARGFCNEL QMC+VSGMEFNP
Sbjct: 530 KDCLPQVGQWNMMNKKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNP 589
Query: 591 EPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDL 650
EPVIPI++ARPDQVEKALKHVYH+SM+KTKGKELELLLAILPDNNGSLYGDLKRICET+L
Sbjct: 590 EPVIPIYSARPDQVEKALKHVYHTSMNKTKGKELELLLAILPDNNGSLYGDLKRICETEL 649
Query: 651 GIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGAD 710
G+ISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVL+DAISCRIPLVSDIPTIIFGAD
Sbjct: 650 GLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGAD 709
Query: 711 VTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSG 770
VTHPENGE+SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTW DPVRGTVSG
Sbjct: 710 VTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSG 769
Query: 771 GMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVT 830
GMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVT
Sbjct: 770 GMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVT 829
Query: 831 FIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSR 890
FI+VQKRHHTRLFANNHRD++STDRSGNILPGTVVD+KICHPTEFDFYLCSHAGIQGTSR
Sbjct: 830 FIVVQKRHHTRLFANNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSR 889
Query: 891 PAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPD- 949
PAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFY+EP+
Sbjct: 890 PAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEI 949
Query: 950 MQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 992
MQ+NGS G +TK+T VG+ GV+PLPALKENVKRVMFYC
Sbjct: 950 MQDNGSP---GKKNTKTT-TVGDVGVKPLPALKENVKRVMFYC 988
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| UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P3Z0 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MG44 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9H9G7 EIF2C3 "Protein argonaute-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LUS2 Eif2c3 "Protein Eif2c3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2446634 Ago3 "argonaute RISC catalytic subunit 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ZLG4 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6EU14 | AGO1A_ORYSJ | No assigned EC number | 0.7522 | 0.8780 | 0.8049 | yes | no |
| Q5ZLG4 | AGO3_CHICK | No assigned EC number | 0.4368 | 0.8165 | 0.9418 | yes | no |
| O77503 | AGO2_RABIT | 3, ., 1, ., 2, 6, ., n, 2 | 0.4265 | 0.8054 | 0.9511 | yes | no |
| Q6K972 | AGO1C_ORYSJ | No assigned EC number | 0.7398 | 0.8770 | 0.8605 | no | no |
| Q7XSA2 | AGO1B_ORYSJ | No assigned EC number | 0.7644 | 0.8780 | 0.7790 | yes | no |
| Q9H9G7 | AGO3_HUMAN | No assigned EC number | 0.4368 | 0.8165 | 0.9418 | yes | no |
| O04379 | AGO1_ARATH | No assigned EC number | 0.7758 | 0.8790 | 0.8320 | no | no |
| A3KPK0 | AGO3_DANRE | No assigned EC number | 0.4372 | 0.8145 | 0.9395 | yes | no |
| Q5Z5B2 | AGO1D_ORYSJ | No assigned EC number | 0.7397 | 0.8780 | 0.8391 | no | no |
| Q69VD5 | PNH1_ORYSJ | No assigned EC number | 0.8340 | 0.8739 | 0.8855 | yes | no |
| Q9XGW1 | AGO10_ARATH | No assigned EC number | 0.8344 | 0.9848 | 0.9888 | yes | no |
| O74957 | AGO1_SCHPO | No assigned EC number | 0.3367 | 0.8145 | 0.9688 | yes | no |
| Q6T5B7 | AGO3_BOVIN | No assigned EC number | 0.4215 | 0.8377 | 0.9651 | yes | no |
| Q8CJF9 | AGO3_MOUSE | No assigned EC number | 0.4368 | 0.8165 | 0.9418 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AGO906 | argonaute protein group (996 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 992 | |||
| cd04657 | 426 | cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain | 0.0 | |
| PLN03202 | 900 | PLN03202, PLN03202, protein argonaute; Provisional | 0.0 | |
| pfam02171 | 296 | pfam02171, Piwi, Piwi domain | 1e-125 | |
| smart00950 | 301 | smart00950, Piwi, This domain is found in the prot | 1e-110 | |
| cd04658 | 448 | cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P | 6e-79 | |
| cd02826 | 393 | cd02826, Piwi-like, Piwi-like: PIWI domain | 3e-73 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 3e-39 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 2e-34 | |
| pfam08699 | 52 | pfam08699, DUF1785, Domain of unknown function (DU | 4e-21 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 5e-12 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 4e-08 |
| >gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
Score = 616 bits (1592), Expect = 0.0
Identities = 225/456 (49%), Positives = 290/456 (63%), Gaps = 37/456 (8%)
Query: 497 YAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRW 556
Y KEFGI +S+++ +V R+LP P LKY K P+ G WN+ KK + G + W
Sbjct: 2 YLKEFGISVSKEMITVPGRVLPPPKLKYG--DSSKTVPPRNGSWNLRGKKFLEGGPIRSW 59
Query: 557 ACINFSRSVQESVA----RGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVY 612
A +NF+ + R F ++L + +G+ + + +VE+
Sbjct: 60 AVLNFAGPRRSREERADLRNFVDQLVKTVIGAGI-----NITTAIASVEGRVEELFAK-- 112
Query: 613 HSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKI-SKQYLA 671
+ + KG+ +L+L ILP + +YG +KR+ +T+LGI +QC L K V K + QY A
Sbjct: 113 ---LKQAKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQYFA 169
Query: 672 NVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGE-DSSPSIAAVVAS 730
NV+LKIN+K+GG N L I PL++ PT++ GADVTHP G+ +PSIAAVVAS
Sbjct: 170 NVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVAS 226
Query: 731 QDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLR 790
DW +Y V Q+HRQE+I DL M+R+LL +F+KATG+ P R
Sbjct: 227 VDWHL-AQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPER 272
Query: 791 IIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDR 850
II+YRDGVSEGQF QVL EL AIRKACA L P Y+P +TFI+VQKRHHTR F + D
Sbjct: 273 IIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDA 332
Query: 851 SSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQS 910
++GN+ PGTVVD I HP EFDFYLCSHAGIQGT+RP HYHVLWDE FTAD +Q+
Sbjct: 333 DG--KNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQT 390
Query: 911 LTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYM 946
LT NLCYTYARCTRSVS+ PPAYYAHLAA RAR Y+
Sbjct: 391 LTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426
|
Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426 |
| >gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216915 pfam02171, Piwi, Piwi domain | Back alignment and domain information |
|---|
| >gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives | Back alignment and domain information |
|---|
| >gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) | Back alignment and domain information |
|---|
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 992 | |||
| PLN03202 | 900 | protein argonaute; Provisional | 100.0 | |
| KOG1041 | 876 | consensus Translation initiation factor 2C (eIF-2C | 100.0 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 100.0 | |
| cd04657 | 426 | Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut | 100.0 | |
| cd04658 | 448 | Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain | 100.0 | |
| cd02826 | 393 | Piwi-like Piwi-like: PIWI domain. Domain found in | 100.0 | |
| PF02171 | 302 | Piwi: Piwi domain; InterPro: IPR003165 This domain | 100.0 | |
| cd04659 | 404 | Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI | 100.0 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.88 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 99.82 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 99.81 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.7 | |
| PF08699 | 52 | DUF1785: Domain of unknown function (DUF1785); Int | 99.53 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.39 | |
| COG1431 | 685 | Argonaute homolog, implicated in RNA metabolism [T | 99.16 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 98.4 | |
| PF13032 | 138 | DUF3893: Domain of unknown function (DUF3893) | 89.85 | |
| PF08459 | 155 | UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I | 82.67 |
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-168 Score=1557.86 Aligned_cols=829 Identities=38% Similarity=0.668 Sum_probs=706.2
Q ss_pred CCCcccCCCCCCCCCCCCeEEEEeeEEEeec--CCCceeeEeEEEccC----CCChHHHHHHHHHHHHHhcccccCCCcc
Q 001950 124 SSKSLSFAPRPGYGQVGTKCIVKANHFFAEL--PDKDLNQYDVTITPE----VASRTVNRAIMAELVRLYKESDLGMRLP 197 (992)
Q Consensus 124 ~~~~~~~p~RP~~Gt~G~~i~l~tN~f~i~~--~~~~iy~YdV~i~p~----~~~k~~~r~i~~~l~~~~~~~~~~~~~~ 197 (992)
++....+++|||||+.|++|.|+||||+|.+ ++..||||||+|.|+ +.+++++++|++++++++.. .+.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCce
Confidence 4445578999999999999999999999997 467899999999963 44567788999999887644 3555578
Q ss_pred eeeCcceEEEecccCCCceeEEEEeeccccC-------------CCC--------CCcccEEEEEEEEeeeechhhHHHH
Q 001950 198 AYDGRKSLYTAGELPFVWKEFKIKLVDELDG-------------ING--------PKRVREYKVVIKFAARANMHHLGQF 256 (992)
Q Consensus 198 ~yDG~k~lys~~~Lp~~~~~f~V~l~~~~~~-------------~~~--------~~~~~~f~V~Ik~~~~i~l~~l~~~ 256 (992)
+|||+++|||+.+||.+..+|.|++.+++.. .+. ..+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 9999999999999998766788887643110 000 1246889999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHhhhcCC-ccccccccCCCCCCCCccCCCCEEEEeeeeeeeeeccceeEeeeeccccccc
Q 001950 257 LAGKRADAPQEALQILDIVLRELSTKR-YCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFI 335 (992)
Q Consensus 257 l~g~~~~~~~~~iq~LniIlr~~~~~~-~~~vGrsFF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~gl~LNIDvs~~aF~ 335 (992)
|.|...+.+.++||+||+|||+.++.. ++.+||+||.++.....++++|+|+|+||++|||+++++|+||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999988888999999999999998665 8999999998654444579999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCC--------C
Q 001950 336 EPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDN--------S 407 (992)
Q Consensus 336 ~~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~--------g 407 (992)
++++|+|+|.++.+..+ ....++.++.++|+|++|.++|++ +.|+|.||++.++++.+|++++. +
T Consensus 266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~~---k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~ 338 (900)
T PLN03202 266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPSN---QEYKITGLSEKPCKEQTFSLKQRNGNGNEVET 338 (900)
T ss_pred cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecCC---ceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence 99999999998765421 112356679999999999999973 56999999999999999986531 3
Q ss_pred cceeHHHHHHHHhCccccCC-CCCceeeCCCCccccccccceeecCCcccccCCCHHHHHHHHhhhcCCchhhHHHHHHH
Q 001950 408 TMKSVVEYFQEMYGFTIQHT-HLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQT 486 (992)
Q Consensus 408 ~~iSV~eYF~~~Y~i~L~~p-~lPll~~g~~~k~~ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~ 486 (992)
+.+||+|||+++|||+|+|| ++|||++|+..+++|||||||.|++||+++++|++.|+++||++|+.+|.+|.+.|.++
T Consensus 339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~ 418 (900)
T PLN03202 339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA 418 (900)
T ss_pred ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46899999999999999996 99999999988999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCccccccccceEEcccceEEEeEEcCCCceeccCCCCccccCCCCcccccccceeecCceeceeEEEEeCCCcc
Q 001950 487 VQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQ 566 (992)
Q Consensus 487 ~~~~~~~~~~~l~~fGi~I~~~~~~v~aRvLp~P~I~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~ 566 (992)
++.++++.+++|++|||+|+++|++|+|||||+|.|.|+++. .+.|++|+||+++++|+.++.+++|++|++.+.
T Consensus 419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~-- 493 (900)
T PLN03202 419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR-- 493 (900)
T ss_pred HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence 888888888999999999999999999999999999998753 246789999999999999999999999988653
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCcccccC------CChhHHHHHHHHHHHhhcccccCCCceEEEEEecCC-CCchh
Q 001950 567 ESVARGFCNELAQMCQVSGMEFNPEPVIPIHN------ARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDN-NGSLY 639 (992)
Q Consensus 567 ~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~-~~~~Y 639 (992)
..+++|++.|.+.|+.+||.+..+..+.... ...+.++..++.+.+. .+ ..++|||||||++ +.++|
T Consensus 494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~-~~~qlv~vIlp~~~~~~~Y 567 (900)
T PLN03202 494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSK----LP-GPPQFLLCILPERKNSDIY 567 (900)
T ss_pred -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHh----cc-CCCeEEEEEEcCCCCcchH
Confidence 2578999999999999999998754321111 0112344444443332 11 4689999999974 67899
Q ss_pred hhHHHHhhhccCceeeeEeeccccccchhhHHHHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCC
Q 001950 640 GDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGED 719 (992)
Q Consensus 640 ~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~ 719 (992)
+.||++||+++||+||||... +.++||+.|||||||+||||+||.+....+..+|++.+.+|||||+||+||+++..
T Consensus 568 ~~IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~ 644 (900)
T PLN03202 568 GPWKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQS 644 (900)
T ss_pred HHHHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCC
Confidence 999999999999999999654 34789999999999999999999887554455788777899999999999998864
Q ss_pred CCCceEEEEeccCCCCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHHHHc-CCCCceEEEEeCCC
Q 001950 720 SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKAT-GQKPLRIIFYRDGV 798 (992)
Q Consensus 720 ~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~-g~~P~~IIiyRDGV 798 (992)
..|||||+|||+|++.+++|++.++.|.+++|+|++|++...+ ..+++|+.++|+.|++.+ +.+|++||||||||
T Consensus 645 ~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGV 720 (900)
T PLN03202 645 DVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGV 720 (900)
T ss_pred CCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCC
Confidence 5799999999999767899999999999999999987421111 125889999999999865 69999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEE
Q 001950 799 SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFY 878 (992)
Q Consensus 799 SEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFy 878 (992)
|||||.+|+++|+++|++||++++++|+|+||||||+||||+|||+.+ +.+||+||||||++||||..||||
T Consensus 721 seGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFy 792 (900)
T PLN03202 721 SESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFY 792 (900)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEE
Confidence 999999999999999999999999899999999999999999999863 358999999999999999999999
Q ss_pred EeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhhhcCccccCCCCCCC
Q 001950 879 LCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDG 958 (992)
Q Consensus 879 L~Sh~~~qGTarPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~~~~~~~~~~~ 958 (992)
||||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||..+.++.+++++
T Consensus 793 L~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~ 872 (900)
T PLN03202 793 MCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSH 872 (900)
T ss_pred EecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999854322222211
Q ss_pred CCCCccccccccCCCCCCCcccccccccCCeeeC
Q 001950 959 SGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 992 (992)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~y~ 992 (992)
++ +++. +..+...++.||+||+++||||
T Consensus 873 ~~--~~~~----~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 873 GG--ITSA----GAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred cc--cCCC----CccccccccccchhhcCCeeeC
Confidence 11 1111 1111234678999999999998
|
|
| >KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >cd02826 Piwi-like Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] | Back alignment and domain information |
|---|
| >cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria | Back alignment and domain information |
|---|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO | Back alignment and domain information |
|---|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
| >PF13032 DUF3893: Domain of unknown function (DUF3893) | Back alignment and domain information |
|---|
| >PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 992 | ||||
| 4f3t_A | 861 | Human Argonaute-2 - Mir-20a Complex Length = 861 | 0.0 | ||
| 4ei1_A | 859 | Crystal Structure Of Human Argonaute2 Length = 859 | 0.0 | ||
| 3vna_A | 154 | Structural Insights Into Small Rna Sorting And Mrna | 3e-62 | ||
| 4g0p_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 2e-61 | ||
| 3vnb_A | 155 | Structural Insights Into Small Rna Sorting And Mrna | 5e-59 | ||
| 4g0x_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 2e-58 | ||
| 4f1n_A | 1046 | Crystal Structure Of Kluyveromyces Polysporus Argon | 6e-49 | ||
| 2yhb_A | 437 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 1e-46 | ||
| 4g0o_A | 139 | Crystal Structure Of Arabidopsis Thaliana Ago5 Mid | 5e-36 | ||
| 2yha_A | 388 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 2e-29 | ||
| 1r4k_A | 169 | Solution Structure Of The Drosophila Argonaute 1 Pa | 2e-28 | ||
| 1si2_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 5e-27 | ||
| 1si3_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 4e-26 | ||
| 3luc_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 2e-12 | ||
| 3luk_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 1e-11 | ||
| 4g0m_A | 150 | Crystal Structure Of Arabidopsis Thaliana Ago2 Mid | 5e-10 | ||
| 1vyn_A | 143 | Structure And Nucleic Acid Binding Of The Drosophil | 8e-08 | ||
| 1r6z_P | 509 | The Crystal Structure Of The Argonaute2 Paz Domain | 8e-08 | ||
| 3mj0_A | 124 | Crystal Structure Of Drosophia Ago-Paz Domain In Co | 8e-07 | ||
| 1t2r_A | 123 | Structural Basis For 3' End Recognition Of Nucleic | 9e-07 | ||
| 2xdy_A | 145 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do | 7e-05 |
| >pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 | Back alignment and structure |
|
| >pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 | Back alignment and structure |
| >pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 | Back alignment and structure |
| >pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 | Back alignment and structure |
| >pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 | Back alignment and structure |
| >pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 | Back alignment and structure |
| >pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 | Back alignment and structure |
| >pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 | Back alignment and structure |
| >pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 | Back alignment and structure |
| >pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 | Back alignment and structure |
| >pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 | Back alignment and structure |
| >pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 | Back alignment and structure |
| >pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 | Back alignment and structure |
| >pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
| >pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
| >pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 | Back alignment and structure |
| >pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 | Back alignment and structure |
| >pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 | Back alignment and structure |
| >pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 | Back alignment and structure |
| >pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 | Back alignment and structure |
|---|
Score = 874 bits (2259), Expect = 0.0
Identities = 355/878 (40%), Positives = 512/878 (58%), Gaps = 44/878 (5%)
Query: 122 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMA 181
P + PRP +G G ++AN F ++P D+ Y++ I PE R VNR I+
Sbjct: 19 PIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVE 78
Query: 182 ELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVV 241
+V+ +K G R P +DGRK+LYTA LP + ++++ +G + R +KV
Sbjct: 79 HMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEG-----KDRIFKVS 133
Query: 242 IKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQR 301
IK+ + ++ L L+G+ P E +Q LD+V+R L + RY P+GRSFF+ S
Sbjct: 134 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNP 193
Query: 302 LGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK---DVLSRTLS 358
LG G E W GF+QS+RP+ + LNID+++ AF + PVIEFV ++L + + L+
Sbjct: 194 LGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 253
Query: 359 DSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK---SVVEY 415
DS RVK K ++G+KVE+TH G ++RKYRV +T +P FP+ S +V +Y
Sbjct: 254 DSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQY 313
Query: 416 FQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQR 475
F++ + +++ HLPCLQVG ++K YLP+E C IV GQR K+L + Q + +++ T +
Sbjct: 314 FKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARS 373
Query: 476 PRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLP 535
DR+ +I + ++ +++ D Y +EFGI + +++ V R+L P + Y + P
Sbjct: 374 APDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYG-GRNKAIATP 432
Query: 536 QVGQWNMMNKKMINGMTVSRWACINFS--RSVQESVARGFCNELAQMCQVSGMEFNPEPV 593
G W+M NK+ G+ + WA F+ R E + F +L ++ + +GM +P
Sbjct: 433 VQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPC 492
Query: 594 IPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGII 653
+ D VE +H+ K L+L++ ILP +Y ++KR+ +T LG+
Sbjct: 493 FCKYAQGADSVEPMFRHL------KNTYAGLQLVVVILPGKT-PVYAEVKRVGDTVLGMA 545
Query: 654 SQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTH 713
+QC K+V + + Q L+N+ LKINVK+GG N +LL P V P I GADVTH
Sbjct: 546 TQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTH 602
Query: 714 PENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMI 773
P G+ PSIAAVV S D +Y V Q HRQE+IQDL M+
Sbjct: 603 PPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMV 648
Query: 774 RDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFII 833
R+LLI F K+T KP RIIFYRDGVSEGQF QVL +EL AIR+AC LE +YQP +TFI+
Sbjct: 649 RELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIV 708
Query: 834 VQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAH 893
VQKRHHTRLF + +R +SGNI GT VD+KI HPTEFDFYLCSHAGIQGTSRP+H
Sbjct: 709 VQKRHHTRLFCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSH 766
Query: 894 YHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQEN 953
YHVLWD+N F++D +Q LT LC+TY RCTRSVS+ PAYYAHL AFRAR+++ ++
Sbjct: 767 YHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 826
Query: 954 GSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFY 991
+ S + + ++ R M++
Sbjct: 827 AEGSHTSGQSNGR----DHQALAKAVQVHQDTLRTMYF 860
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 992 | |||
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 100.0 | |
| 4f1n_A | 1046 | Kpago; argonaute, RNAI, RNAse H, RNA binding prote | 100.0 | |
| 2yhb_A | 437 | QDE-2, post-transcriptional gene silencing protein | 100.0 | |
| 1yvu_A | 706 | Hypothetical protein AQ_1447; RNAse H fold, RNA bi | 100.0 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 100.0 | |
| 2yha_A | 388 | Post-transcriptional gene silencing protein QDE-2; | 100.0 | |
| 3ho1_A | 685 | Argonaute; argonaute, protein-DNA-RNA complex, nuc | 100.0 | |
| 2w42_A | 427 | PIWI, putative uncharacterized protein; RNAI, RISC | 100.0 | |
| 4g0x_A | 147 | Protein argonaute 1; MID domain, small RNA 5' nucl | 99.95 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 99.94 | |
| 4g0o_A | 139 | Protein argonaute 5; MID domain, small RNA 5' nucl | 99.94 | |
| 3luc_A | 138 | Protein argonaute-2; MID domain, ribonucleoprotein | 99.93 | |
| 4g0m_A | 150 | Protein argonaute 2; MID domain, small RNA 5' nucl | 99.92 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 99.9 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.89 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 99.85 | |
| 1r6z_P | 509 | Chimera of maltose-binding periplasmic protein AN | 99.8 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.79 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 98.35 |
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-179 Score=1652.66 Aligned_cols=835 Identities=42% Similarity=0.743 Sum_probs=714.4
Q ss_pred CCCCCCCcccCCCCCCCCCCCCeEEEEeeEEEeecCCCceeeEeEEEccCCCChHHHHHHHHHHHHHhcccccCCCccee
Q 001950 120 GFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAY 199 (992)
Q Consensus 120 ~~~~~~~~~~~p~RP~~Gt~G~~i~l~tN~f~i~~~~~~iy~YdV~i~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~y 199 (992)
+||++++.+.+|+|||+||.|++|.|+||||++++++..+|||||+|.|+..+++++|++++++++.++...|++..+||
T Consensus 17 ~~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~af 96 (861)
T 4f3t_A 17 PPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVF 96 (861)
T ss_dssp --------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEE
T ss_pred CCccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEE
Confidence 35667788999999999999999999999999999888999999999999888899999999999888666788777899
Q ss_pred eCcceEEEecccCCCceeEEEEeeccccCCCCCCcccEEEEEEEEeeeechhhHHHHhcCCCCCCchHHHHHHHHHHHhh
Q 001950 200 DGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLREL 279 (992)
Q Consensus 200 DG~k~lys~~~Lp~~~~~f~V~l~~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~l~~~l~g~~~~~~~~~iq~LniIlr~~ 279 (992)
||+++|||+.+||++...+++.+....+ .++++|+|+|++++++++++|.+||+|...+.+.++||+||||||+.
T Consensus 97 DG~~~l~s~~~L~~~~~~~~~~v~~~~~-----~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~ 171 (861)
T 4f3t_A 97 DGRKNLYTAMPLPIGRDKVELEVTLPGE-----GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHL 171 (861)
T ss_dssp CSSSEEEESSCCSCSSCEEEEECCC------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHH
T ss_pred cCcceEEECCcCCCCCcceEEEEecCCC-----CCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhh
Confidence 9999999999999865433333321111 24678999999999999999999999998888899999999999999
Q ss_pred hcCCccccccccCCCCCCCCccCCCCEEEEeeeeeeeeeccceeEeeeecccccccccccHHHHHHHHhcCCcc---CCC
Q 001950 280 STKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVL---SRT 356 (992)
Q Consensus 280 ~~~~~~~vGrsFF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~gl~LNIDvs~~aF~~~~~lld~i~~~~~~~~~---~r~ 356 (992)
+++++..+||+||+++.+...++++|+|+|+||++|||+++++|+||||+++++||++++|+|+|.++++.++. .++
T Consensus 172 ~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~ 251 (861)
T 4f3t_A 172 PSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKP 251 (861)
T ss_dssp HHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CC
T ss_pred ccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccc
Confidence 98899999999998765545689999999999999999999999999999999999999999999999875432 345
Q ss_pred CChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecC-CCC--cceeHHHHHHHHhCccccCCCCCcee
Q 001950 357 LSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVD-DNS--TMKSVVEYFQEMYGFTIQHTHLPCLQ 433 (992)
Q Consensus 357 l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~-~~g--~~iSV~eYF~~~Y~i~L~~p~lPll~ 433 (992)
+++.++.+++++|+|++|.++|.++.+|+|+|.||++.++.+.+|.++ ++| .++||+|||+++|||+|+||+||||+
T Consensus 252 ~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~ 331 (861)
T 4f3t_A 252 LTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQ 331 (861)
T ss_dssp CCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEE
T ss_pred cCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEE
Confidence 778889999999999999999976556789999999988989999753 233 36899999999999999999999999
Q ss_pred eCCCCccccccccceeecCCcccccCCCHHHHHHHHhhhcCCchhhHHHHHHHHHhccCCccccccccceEEcccceEEE
Q 001950 434 VGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVE 513 (992)
Q Consensus 434 ~g~~~k~~ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~I~~~~~~v~ 513 (992)
+|++++++|||||||.|+|||++.++|+++|+++|||+|+.+|.+|.+.|.++++.++++.+++|++|||+|+++|++|+
T Consensus 332 ~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~ 411 (861)
T 4f3t_A 332 VGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVT 411 (861)
T ss_dssp ESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEE
T ss_pred ecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEE
Confidence 99888899999999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred eEEcCCCceeccCCCCccccCCCCcccccccceeecCceeceeEEEEeCCC--cchHHHHHHHHHHHHHHHhcCcccCCC
Q 001950 514 ARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRS--VQESVARGFCNELAQMCQVSGMEFNPE 591 (992)
Q Consensus 514 aRvLp~P~I~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~--~~~~~~~~f~~~L~~~~~~~Gm~i~~~ 591 (992)
|||||||+|.|+++.+ ....|.+|+||+++++|+.++++++|++++++.. ..++.+++|++.|.+.|+.+||.+..+
T Consensus 412 gRvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~ 490 (861)
T 4f3t_A 412 GRVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQ 490 (861)
T ss_dssp EEECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSC
T ss_pred EEEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCC
Confidence 9999999999986432 2346789999999999999999999999998742 356789999999999999999999865
Q ss_pred CcccccCCChhHHHHHHHHHHHhhcccccCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchhhHH
Q 001950 592 PVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLA 671 (992)
Q Consensus 592 p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~ 671 (992)
|.+.......+.++..++.+.+.. .+++|||||||++ .++|+.||++||+++||+||||+.+++.|.++||+.
T Consensus 491 p~~~~~~~~~~~~~~~~~~l~~~~------~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ 563 (861)
T 4f3t_A 491 PCFCKYAQGADSVEPMFRHLKNTY------AGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLS 563 (861)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHS------TTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHH
T ss_pred CeEEEecCchHHHHHHHHHHHhhc------CCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccccHHHHH
Confidence 644222223345565555554321 3689999999965 578999999999999999999999999888999999
Q ss_pred HHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCCCCCceEEEEeccCCCCcceeeeEEEeeccchh
Q 001950 672 NVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQE 751 (992)
Q Consensus 672 Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E 751 (992)
||+||||+||||+||.+.+. ..|.+...+|||||+||+||+++....|||||||||+|+ ..++|.+.+++|.+++|
T Consensus 564 ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~E 639 (861)
T 4f3t_A 564 NLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDA-HPNRYCATVRVQQHRQE 639 (861)
T ss_dssp HHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECSS-SSCCEEEEEEEESTTCC
T ss_pred HHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcCC-CcceEEEEEEEcCCCcc
Confidence 99999999999999988643 234455679999999999999886678999999999997 79999999999999999
Q ss_pred hhhhhhccccCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEE
Q 001950 752 LIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF 831 (992)
Q Consensus 752 ~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~ 831 (992)
+|++| ++|+.++|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.++.++|+|+|||
T Consensus 640 ~i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~ 706 (861)
T 4f3t_A 640 IIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITF 706 (861)
T ss_dssp SCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred HHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCCccccccceeEEEEecCCCCCHHHHHHH
Q 001950 832 IIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSL 911 (992)
Q Consensus 832 Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de~~~~~d~Lq~l 911 (992)
|||+||||+|||+.+.++ ..++.+|++||||||++||||.+||||||||.++|||||||||+||+||+++++|+||+|
T Consensus 707 Ivv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~l 784 (861)
T 4f3t_A 707 IVVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQIL 784 (861)
T ss_dssp EEEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHH
T ss_pred EEEEccccceeeecCCcc--cccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHH
Confidence 999999999999987532 346789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccCCCccccchhhhHHHHHHHhhhhcCccccCCC--CCCCCCCCccccccccCCCCCCCcccccccccCCe
Q 001950 912 TNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENG--STDGSGHTSTKSTRAVGESGVRPLPALKENVKRVM 989 (992)
Q Consensus 912 Ty~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M 989 (992)
||+|||+|+|||++|||||||||||++|+|||+||.+...+++ ++.++++. +. ... +...+..||++++++|
T Consensus 785 ty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~--~~---~~~-~~~~~~~vh~~~~~~M 858 (861)
T 4f3t_A 785 TYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSN--GR---DHQ-ALAKAVQVHQDTLRTM 858 (861)
T ss_dssp HHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC------------------C---CST-THHHHTCCCHHHHTTT
T ss_pred HHHHhhhhhccCCCCCCchHHHHHHHHHHHHHHhhccccccCCccccccCCCc--cc---chh-hhhhhhhhhhhhccCc
Confidence 9999999999999999999999999999999999987553222 22111110 01 000 0012346999999999
Q ss_pred eeC
Q 001950 990 FYC 992 (992)
Q Consensus 990 ~y~ 992 (992)
|||
T Consensus 859 ~y~ 861 (861)
T 4f3t_A 859 YFA 861 (861)
T ss_dssp TTC
T ss_pred eeC
Confidence 997
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 992 | ||||
| d1yvua2 | 392 | c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 | 1e-105 | |
| d1w9ha1 | 316 | c.55.3.10 (A:93-408) Hypothetical protein AF1318 { | 3e-75 | |
| d1u04a2 | 447 | c.55.3.10 (A:324-770) Argonaute homologue PF0537 { | 6e-66 | |
| d1t2sa_ | 123 | b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila | 5e-44 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 6e-43 | |
| d1u04a1 | 322 | b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py | 9e-05 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Score = 331 bits (850), Expect = e-105
Identities = 64/410 (15%), Positives = 133/410 (32%), Gaps = 69/410 (16%)
Query: 553 VSRWACINFSRSVQ-ESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHV 611
V I+ S + E F EL + G++ + I ++ ++ L V
Sbjct: 37 VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPV 96
Query: 612 YHSSMSKTKGKELELLLAILPDNNGS-------LYGDLKRICETDLGIISQCCLTKHVFK 664
+ K K+++L++ L + LY +KR I SQ L + +
Sbjct: 97 IN------KIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKN 149
Query: 665 ISKQYLA-NVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPS 723
+ +++ NV+ ++ K G L + + G D++ + +
Sbjct: 150 ENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTVNA 201
Query: 724 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKA 783
+A E+ +Y L A ++L + I D+ K
Sbjct: 202 VAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK----------------AIGDVFSLLEKL 244
Query: 784 TGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLF 843
+K +I+ +RDG E+ A +K Y + + + KR++ R F
Sbjct: 245 GFKKGSKIVVHRDGRLYRD-------EVAAFKKYG----ELYGYSLELLEIIKRNNPRFF 293
Query: 844 ANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNF 903
+N + G + + +GT +P ++ E
Sbjct: 294 SN-----------EKFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGELPV 338
Query: 904 TADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQEN 953
+ + S +L + + + +Y+ +EP +E
Sbjct: 339 --EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEG 386
|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 | Back information, alignment and structure |
|---|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 992 | |||
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1u04a2 | 447 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1w9ha1 | 316 | Hypothetical protein AF1318 {Archaeoglobus fulgidu | 100.0 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 99.96 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 99.93 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 99.91 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=9.4e-63 Score=559.84 Aligned_cols=338 Identities=18% Similarity=0.150 Sum_probs=268.1
Q ss_pred eeceeEEEEeCCC-cchHHHHHHHHHHHHHHHhcCcccCCCCcccccCCChhHHHHHHHHHHHhhcccccCCCceEEEEE
Q 001950 552 TVSRWACINFSRS-VQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAI 630 (992)
Q Consensus 552 ~i~~W~vv~~~~~-~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vi 630 (992)
.+-.|.+|.+... ..+..+++|+++|.+.|+..||++...+.........++.+..+.+.++.. +.+++++||
T Consensus 36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~vi 109 (392)
T d1yvua2 36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKI------KDVDLVIVF 109 (392)
T ss_dssp SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTTT------SSCSEEEEE
T ss_pred ccccceEEEEEEeehhhhHHHHHHHHHHHHHHhcCceecCCCcCeeecCCccchHHHHHHHHhhc------cCCCEEEEE
Confidence 3556766654321 244567999999999999999999754544344444455556666665432 468999999
Q ss_pred ecCCCC-------chhhhHHHHhhhccCceeeeEeeccccccchh-hHHHHHHHHHhhcCCcccccccccccCCCcccCC
Q 001950 631 LPDNNG-------SLYGDLKRICETDLGIISQCCLTKHVFKISKQ-YLANVSLKINVKMGGRNTVLLDAISCRIPLVSDI 702 (992)
Q Consensus 631 lp~~~~-------~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q-~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~ 702 (992)
+|++.. ++|+.||++| .+.||+||||..+++.+.+.+ ++.||++|||+||||+||.|.+. | ..
T Consensus 110 ~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~---~~ 180 (392)
T d1yvua2 110 LEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----E---GK 180 (392)
T ss_dssp EC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----T---TC
T ss_pred EcCCCCcccccchhHHHHHHHHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCCC-----C---CC
Confidence 987654 6899999987 789999999999999765655 57899999999999999998541 2 35
Q ss_pred CeEEEEEeecCCCCCCCCCCceEEEEeccCCCCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHHH
Q 001950 703 PTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRK 782 (992)
Q Consensus 703 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~ 782 (992)
+|||||+||+|++++... ++++|++++.|......++.....|..++|++ .+++.++|..|++
T Consensus 181 ~tmiIGiDv~h~~~~~~~-~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~----------------~~~~~~~l~~~~~ 243 (392)
T d1yvua2 181 VDAFVGIDISRITRDGKT-VNAVAFTKIFNSKGELVRYYLTSYPAFGEKLT----------------EKAIGDVFSLLEK 243 (392)
T ss_dssp CSEEEEECEEECCCSSSC-CCEEEEEEEECTTSCEEEEEEEEECSCTTHHH----------------HHHHHHHHHHHHH
T ss_pred CeEEEEEEEEecCCCCCc-ccEEEEEEEEcCCCCEEEEEEEecCCccHHHH----------------HHHHHHHHHHHHH
Confidence 799999999999876544 44455554444323344455566777777765 5678889999999
Q ss_pred HcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcce
Q 001950 783 ATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPG 862 (992)
Q Consensus 783 ~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pG 862 (992)
.+|.+|++|||||||+.+ ++|+++|++||+++ .|+|+||+|+||||+|||+. +|+++|
T Consensus 244 ~~~~~P~rIIi~RdG~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~-----------~~~~~G 301 (392)
T d1yvua2 244 LGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSN-----------EKFIKG 301 (392)
T ss_dssp TTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECS-----------CSCCTT
T ss_pred hcCCCCceEEEEeCCCCc-------HHHHHHHHHHHHhc----CCcEEEEEEEecCCeeecCC-----------CCCCCC
Confidence 999999999999999865 57999999999876 58999999999999999974 356679
Q ss_pred eeecCccccCCcceEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHh
Q 001950 863 TVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRA 942 (992)
Q Consensus 863 TVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Ra 942 (992)
|+|+ .+..++|||+||.+.|||+||+||+|++||+ +.|+||++||+|||+|+|||++||+|+|+||||++|+|+
T Consensus 302 t~v~----~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~ 375 (392)
T d1yvua2 302 YFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLM 375 (392)
T ss_dssp EEEE----BSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHH
T ss_pred CEEe----CCCCeEEEEEcCCcCCCCCCCcEEEEECCCC--CHHHHHHHHHHHHhhccCcCCCCeeCHHHHHHHHHHHHH
Confidence 9874 5678899999999999999999999999986 469999999999999999999999999999999999999
Q ss_pred hhhcCcc
Q 001950 943 RFYMEPD 949 (992)
Q Consensus 943 r~~l~~~ 949 (992)
|.++++.
T Consensus 376 r~~~~p~ 382 (392)
T d1yvua2 376 LRGIEPI 382 (392)
T ss_dssp HTCSSCC
T ss_pred hhcCCcc
Confidence 9988753
|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|