Citrus Sinensis ID: 001961
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 990 | 2.2.26 [Sep-21-2011] | |||||||
| O04379 | 1048 | Protein argonaute 1 OS=Ar | yes | no | 0.898 | 0.849 | 0.819 | 0.0 | |
| Q6EU14 | 1082 | Protein argonaute 1A OS=O | yes | no | 0.984 | 0.901 | 0.751 | 0.0 | |
| Q7XSA2 | 1118 | Protein argonaute 1B OS=O | no | no | 0.867 | 0.768 | 0.842 | 0.0 | |
| Q5Z5B2 | 1038 | Protein argonaute 1D OS=O | no | no | 0.879 | 0.839 | 0.766 | 0.0 | |
| Q6K972 | 1011 | Protein argonaute 1C OS=O | no | no | 0.803 | 0.786 | 0.813 | 0.0 | |
| Q9XGW1 | 988 | Protein argonaute 10 OS=A | no | no | 0.801 | 0.802 | 0.789 | 0.0 | |
| Q69VD5 | 979 | Protein argonaute PNH1 OS | no | no | 0.805 | 0.814 | 0.784 | 0.0 | |
| Q851R2 | 1058 | Protein argonaute MEL1 OS | no | no | 0.919 | 0.860 | 0.544 | 0.0 | |
| Q9SJK3 | 997 | Protein argonaute 5 OS=Ar | no | no | 0.852 | 0.846 | 0.564 | 0.0 | |
| Q7Y001 | 1049 | Protein argonaute 12 OS=O | no | no | 0.791 | 0.747 | 0.568 | 0.0 |
| >sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1516 bits (3925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/902 (81%), Positives = 803/902 (89%), Gaps = 12/902 (1%)
Query: 89 EYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSG 148
EYQGRGRGGPP G G G G GG S GP + +PELHQAT +P
Sbjct: 79 EYQGRGRGGPPH---------QGGRGGYGGGRGGGPSSGPPQRQSVPELHQAT-SPTYQA 128
Query: 149 VMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRG 208
V +QPT S+ S + PE + ++QQF+QLS+ E+ + SQ IQP P SSK+ +FP+RPG+G
Sbjct: 129 VSSQPTLSEV-SPTQVPEPTVLAQQFEQLSV-EQGAPSQAIQPIPSSSKAFKFPMRPGKG 186
Query: 209 STGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLP 268
+G RCIVKANHFFAELPDKDLH YDVTITPEVTSRGVNRAVM+QLV YR+SHLG RLP
Sbjct: 187 QSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLP 246
Query: 269 AYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFL 328
AYDGRKSLYTAGPLPF SKEFRI LLD++ G GGQRREREFKVVIKL ARADLHHLG+FL
Sbjct: 247 AYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQRREREFKVVIKLVARADLHHLGMFL 306
Query: 329 QGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIR 388
+G+Q+DAPQEALQVLDIVLRELPT+RY PVGRSFYSPD+G++Q LG+GLESWRGFYQSIR
Sbjct: 307 EGKQSDAPQEALQVLDIVLRELPTSRYIPVGRSFYSPDIGKKQSLGDGLESWRGFYQSIR 366
Query: 389 PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448
PTQMGLSLNIDMSSTAFIE PVI FV LLNRD+SSRPLSDADRVKIKKALRGV+VEVT
Sbjct: 367 PTQMGLSLNIDMSSTAFIEANPVIQFVCDLLNRDISSRPLSDADRVKIKKALRGVKVEVT 426
Query: 449 HRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ 508
HRGNMRRKYRISGLT+ T ELTFPVDE T KSVVEYF+ETYGF IQHTQ PCLQVGN
Sbjct: 427 HRGNMRRKYRISGLTAVATRELTFPVDERNTQKSVVEYFHETYGFRIQHTQLPCLQVGNS 486
Query: 509 QRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPY 568
RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRP +RE+DI+QTV N Y +D Y
Sbjct: 487 NRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIDREKDILQTVQLNDYAKDNY 546
Query: 569 AREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWI 628
A+EFGIKIS LASVEARILP PWLKYH++G+E CLPQVGQWNMMNKKM+NGGTVN+WI
Sbjct: 547 AQEFGIKISTSLASVEARILPPPWLKYHESGREGTCLPQVGQWNMMNKKMINGGTVNNWI 606
Query: 629 CINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMT 688
CINFSR VQD++AR FC ELAQMCY+SGMAFNPEPV+PP+SARPE VEKVLKTRYHDA +
Sbjct: 607 CINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATS 666
Query: 689 KLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALK 748
KL QGKE+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKHVFKMSKQYMANVALK
Sbjct: 667 KLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALK 726
Query: 749 INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEV 808
INVKVGGRNTVLVDA+SRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPE+
Sbjct: 727 INVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEI 786
Query: 809 TKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRD 868
TKYAGLVCAQAHRQELIQDLFK W+DP +G V+GGMIKELLI+FRR+TG KP RIIFYRD
Sbjct: 787 TKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRD 846
Query: 869 GVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRS 928
GVSEGQFYQVLLYELDAIRKACASLE YQPPVTFVVVQKRHHTRLFA NH+DR++VDRS
Sbjct: 847 GVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDRS 906
Query: 929 GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLC 988
GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADGLQSLTNNLC
Sbjct: 907 GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLC 966
Query: 989 YT 990
YT
Sbjct: 967 YT 968
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Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 | Back alignment and function description |
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| >sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 990 | ||||||
| 255570639 | 1063 | eukaryotic translation initiation factor | 0.985 | 0.918 | 0.866 | 0.0 | |
| 225464279 | 1085 | PREDICTED: protein argonaute 1-like [Vit | 0.995 | 0.908 | 0.832 | 0.0 | |
| 296088013 | 1038 | unnamed protein product [Vitis vinifera] | 0.971 | 0.926 | 0.824 | 0.0 | |
| 224120474 | 1062 | argonaute protein group [Populus trichoc | 0.864 | 0.806 | 0.905 | 0.0 | |
| 356531036 | 1058 | PREDICTED: protein argonaute 1-like [Gly | 0.979 | 0.916 | 0.848 | 0.0 | |
| 449439225 | 1064 | PREDICTED: protein argonaute 1A-like [Cu | 0.984 | 0.916 | 0.849 | 0.0 | |
| 356560055 | 1053 | PREDICTED: protein argonaute 1-like [Gly | 0.976 | 0.918 | 0.830 | 0.0 | |
| 409127948 | 1054 | AGO1A [Solanum lycopersicum] gi|40989306 | 0.970 | 0.911 | 0.813 | 0.0 | |
| 84688906 | 1052 | AGO1-1, partial [Nicotiana benthamiana] | 0.973 | 0.916 | 0.814 | 0.0 | |
| 298676333 | 1061 | ARGONAUTE 1 [Nicotiana tabacum] | 0.979 | 0.914 | 0.809 | 0.0 |
| >gi|255570639|ref|XP_002526275.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223534406|gb|EEF36112.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1683 bits (4358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/993 (86%), Positives = 901/993 (90%), Gaps = 17/993 (1%)
Query: 1 MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGP 60
MVRK+RTE P++GGESSE E ++GG SQRP ER+A G G GR WGP
Sbjct: 1 MVRKRRTEAPASGGESSEPHEAASGG---SQRPYERNA----PPQQGPGGPYQGGRSWGP 53
Query: 61 PSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGG 120
SQQGGRGG G GR G QQQ YGG EYQGRGRG G G G G S
Sbjct: 54 QSQQGGRGGGGRGRSGGMSQQQQYGGGPEYQGRGRGP------PQQGGRGGYGGGRSSSN 107
Query: 121 RGGH-SGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEV--SQQFQQL 177
RGG S GP+R +PELHQAT P+ +GV Q S+ SSS PE S V +QQ Q+L
Sbjct: 108 RGGPPSVGPSRPP-VPELHQATLAPYQAGVSPQLMPSEGSSSSGPPEPSPVVVAQQMQEL 166
Query: 178 SLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTI 237
S+ +EVSSSQ IQ PPSSKS+RFPLRPG+GSTG RCIVKANHFFAELPDKDLHQYDVTI
Sbjct: 167 SIQQEVSSSQPIQAPPPSSKSMRFPLRPGKGSTGIRCIVKANHFFAELPDKDLHQYDVTI 226
Query: 238 TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDD 297
TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF+SKEF+ITL+D+D
Sbjct: 227 TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFKITLIDED 286
Query: 298 DGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 357
DG GGQRREREF+VVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP
Sbjct: 287 DGSGGQRREREFRVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 346
Query: 358 VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQ 417
VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFV Q
Sbjct: 347 VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVNQ 406
Query: 418 LLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES 477
LLNRDVSSRPLSDADRVKIKKALRGV+VEVTHRGNMRRKYRISGLTSQ T ELTFPVDE
Sbjct: 407 LLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDER 466
Query: 478 GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQIT 537
GT+KSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCK+VEGQRYSKRLNERQIT
Sbjct: 467 GTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKVVEGQRYSKRLNERQIT 526
Query: 538 ALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHD 597
ALLKVTCQRP ERERDIMQTVHHNAY DPYA+EFGIKISEKLASVEARILPAPWLKYHD
Sbjct: 527 ALLKVTCQRPQERERDIMQTVHHNAYGNDPYAKEFGIKISEKLASVEARILPAPWLKYHD 586
Query: 598 TGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGM 657
TG+EKDCLPQVGQWNMMNKKMVNGGTVN+WICINFSR+VQDS+ARGFC+ELAQMCYISGM
Sbjct: 587 TGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDSVARGFCYELAQMCYISGM 646
Query: 658 AFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRI 717
AFNPEPV+PP+SARPE VEKVLKTRYHDAMTKL QGKELDLLIVILPDNNGSLYG+LKRI
Sbjct: 647 AFNPEPVLPPVSARPEQVEKVLKTRYHDAMTKLQQGKELDLLIVILPDNNGSLYGELKRI 706
Query: 718 CETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTI 777
CETDLGLVSQCCLTKHVF+M+KQY+ANVALKINVKVGGRNTVLVDA+SRRIPLVSDRPTI
Sbjct: 707 CETDLGLVSQCCLTKHVFRMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTI 766
Query: 778 IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVR 837
IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFK WQDPVR
Sbjct: 767 IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKEWQDPVR 826
Query: 838 GAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY 897
G V+GGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY
Sbjct: 827 GRVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY 886
Query: 898 QPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI 957
QPPVTFVVVQKRHHTRLFANNH+DRNAVD+SGNILPGTVVDSKICHPTEFDFYLCSHAGI
Sbjct: 887 QPPVTFVVVQKRHHTRLFANNHNDRNAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGI 946
Query: 958 QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 990
QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT
Sbjct: 947 QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 979
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464279|ref|XP_002271225.1| PREDICTED: protein argonaute 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296088013|emb|CBI35296.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224120474|ref|XP_002318338.1| argonaute protein group [Populus trichocarpa] gi|222859011|gb|EEE96558.1| argonaute protein group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356531036|ref|XP_003534084.1| PREDICTED: protein argonaute 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449439225|ref|XP_004137387.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] gi|449523970|ref|XP_004168996.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356560055|ref|XP_003548311.1| PREDICTED: protein argonaute 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|409127948|gb|AFV15377.1| AGO1A [Solanum lycopersicum] gi|409893066|gb|AFV46190.1| argonaute1-1, partial [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|84688906|gb|ABC61502.1| AGO1-1, partial [Nicotiana benthamiana] | Back alignment and taxonomy information |
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| >gi|298676333|dbj|BAJ09698.1| ARGONAUTE 1 [Nicotiana tabacum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 990 | ||||||
| TAIR|locus:2170897 | 988 | AGO10 "ARGONAUTE 10" [Arabidop | 0.801 | 0.802 | 0.779 | 0.0 | |
| UNIPROTKB|Q69VD5 | 979 | PHN1 "Protein argonaute PNH1" | 0.809 | 0.818 | 0.775 | 0.0 | |
| UNIPROTKB|Q851R2 | 1058 | MEL1 "Protein argonaute MEL1" | 0.801 | 0.749 | 0.611 | 3.7e-270 | |
| TAIR|locus:2057851 | 997 | AGO5 "ARGONAUTE 5" [Arabidopsi | 0.838 | 0.832 | 0.566 | 3e-252 | |
| UNIPROTKB|F1P3Z0 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.629 | 0.724 | 0.384 | 1.2e-175 | |
| UNIPROTKB|F1MG44 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.613 | 0.705 | 0.390 | 2e-175 | |
| UNIPROTKB|Q9H9G7 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.613 | 0.705 | 0.390 | 2e-175 | |
| UNIPROTKB|B0JYP5 | 860 | EIF2C2 "Protein argonaute-2" [ | 0.623 | 0.717 | 0.377 | 2e-175 | |
| UNIPROTKB|F1LUS2 | 854 | Eif2c3 "Protein Eif2c3" [Rattu | 0.613 | 0.710 | 0.388 | 2.5e-175 | |
| UNIPROTKB|Q6QME8 | 860 | EIF2C2 "Protein argonaute-2" [ | 0.623 | 0.717 | 0.377 | 4.1e-175 |
| TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3330 (1177.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 620/795 (77%), Positives = 699/795 (87%)
Query: 197 KSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVK 256
K+ F RPG G+ GT+CIVKANHF A+LP KDL+QYDVTITPEV+S+ VNRA++ +LV+
Sbjct: 124 KNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVSSKSVNRAIIAELVR 183
Query: 257 LYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLXXXXXXXXX-XXXXXFKVVIKL 315
LY+ES LG+RLPAYDGRKSLYTAG LPF KEF + ++ +KV IK
Sbjct: 184 LYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPKRERSYKVAIKF 243
Query: 316 AARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGE 375
ARA++HHLG FL G++AD PQEA+Q+LDIVLREL R+CPVGRSF+SPD+ Q LGE
Sbjct: 244 VARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRSFFSPDIKTPQRLGE 303
Query: 376 GLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVK 435
GLESW GFYQSIRPTQMGLSLNIDM+S AFIEPLPVI+FV QLL +DV S+PLSD+DRVK
Sbjct: 304 GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSKPLSDSDRVK 363
Query: 436 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVI 495
IKK LRGV+VEVTHR N+RRKYR++GLT+Q T EL FPVDE+ T+KSV+EYF E YGF I
Sbjct: 364 IKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMKSVIEYFQEMYGFTI 423
Query: 496 QHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIM 555
QHT PCLQVGNQ++ +YLPME CKIVEGQRY+KRLNE+QITALLKVTCQRP +RE DI+
Sbjct: 424 QHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDIL 483
Query: 556 QTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMN 615
+TV HNAY +DPYA+EFG+ ISEKLASVEARILPAPWLKYH+ GKEKDCLPQVGQWNMMN
Sbjct: 484 RTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMN 543
Query: 616 KKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHV 675
KKM+NG TV+ W C+NFSR VQ+++ARGFC EL QMC +SGM FNPEPVIP SARP+ V
Sbjct: 544 KKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNPEPVIPIYSARPDQV 603
Query: 676 EKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVF 735
EK LK YH +M K +GKEL+LL+ ILPDNNGSLYGDLKRICET+LGL+SQCCLTKHVF
Sbjct: 604 EKALKHVYHTSMNKT-KGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVF 662
Query: 736 KMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPS 795
K+SKQY+ANV+LKINVK+GGRNTVLVDAIS RIPLVSD PTIIFGADVTHP GE+SSPS
Sbjct: 663 KISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPS 722
Query: 796 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 855
IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL+KTWQDPVRG VSGGMI++LLISFR+A
Sbjct: 723 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKA 782
Query: 856 TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 915
TGQKP RIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF+VVQKRHHTRLF
Sbjct: 783 TGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLF 842
Query: 916 ANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKF 975
ANNH D+N+ DRSGNILPGTVVD+KICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN F
Sbjct: 843 ANNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNF 902
Query: 976 TADGLQSLTNNLCYT 990
TADG+QSLTNNLCYT
Sbjct: 903 TADGIQSLTNNLCYT 917
|
|
| UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P3Z0 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MG44 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9H9G7 EIF2C3 "Protein argonaute-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B0JYP5 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LUS2 Eif2c3 "Protein Eif2c3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6QME8 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6EU14 | AGO1A_ORYSJ | No assigned EC number | 0.751 | 0.9848 | 0.9011 | yes | no |
| O04379 | AGO1_ARATH | No assigned EC number | 0.8192 | 0.8989 | 0.8492 | yes | no |
| Q69VD5 | PNH1_ORYSJ | No assigned EC number | 0.7844 | 0.8050 | 0.8140 | no | no |
| Q9XGW1 | AGO10_ARATH | No assigned EC number | 0.7899 | 0.8010 | 0.8026 | no | no |
| Q5Z5B2 | AGO1D_ORYSJ | No assigned EC number | 0.7667 | 0.8797 | 0.8391 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00000886001 | SubName- Full=Chromosome undetermined scaffold_109, whole genome shotgun sequence; (1080 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 990 | |||
| PLN03202 | 900 | PLN03202, PLN03202, protein argonaute; Provisional | 0.0 | |
| cd04657 | 426 | cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain | 0.0 | |
| pfam02171 | 296 | pfam02171, Piwi, Piwi domain | 1e-111 | |
| smart00950 | 301 | smart00950, Piwi, This domain is found in the prot | 2e-96 | |
| cd04658 | 448 | cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P | 1e-70 | |
| cd02826 | 393 | cd02826, Piwi-like, Piwi-like: PIWI domain | 3e-66 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 9e-43 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 1e-36 | |
| pfam12764 | 102 | pfam12764, Gly-rich_Ago1, Glycine-rich region of a | 4e-27 | |
| pfam08699 | 52 | pfam08699, DUF1785, Domain of unknown function (DU | 4e-23 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 2e-12 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 2e-11 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 6e-08 | |
| pfam12810 | 248 | pfam12810, Gly_rich, Glycine rich protein | 1e-07 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 2e-07 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 3e-06 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 5e-06 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 1e-05 | |
| pfam05268 | 261 | pfam05268, GP38, Phage tail fibre adhesin Gp38 | 1e-05 | |
| pfam06682 | 317 | pfam06682, DUF1183, Protein of unknown function (D | 1e-05 | |
| pfam02084 | 239 | pfam02084, Bindin, Bindin | 1e-05 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 3e-05 | |
| pfam06682 | 317 | pfam06682, DUF1183, Protein of unknown function (D | 1e-04 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-04 | |
| smart00157 | 218 | smart00157, PRP, Major prion protein | 2e-04 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 8e-04 | |
| pfam07466 | 280 | pfam07466, DUF1517, Protein of unknown function (D | 0.002 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| pfam04959 | 211 | pfam04959, ARS2, Arsenite-resistance protein 2 | 0.002 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 0.003 | |
| pfam06273 | 496 | pfam06273, eIF-4B, Plant specific eukaryotic initi | 0.003 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 0.004 |
| >gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional | Back alignment and domain information |
|---|
Score = 610 bits (1575), Expect = 0.0
Identities = 319/858 (37%), Positives = 470/858 (54%), Gaps = 82/858 (9%)
Query: 178 SLPEEVSSSQVIQPAPPSSKSVRFPL-RPGRGSTGTRCIVKANHFFAEL--PDKDLHQYD 234
+P V ++ +P SK R P+ R G GS G + + NHF + PD Y
Sbjct: 10 VVPPNVVPIKL-EPTKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYS 68
Query: 235 VTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFR 290
V++T E V +G+ R V++++ + Y GK AYDG KSL+T G LP EF
Sbjct: 69 VSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDF-AYDGEKSLFTVGALPQNKLEFT 127
Query: 291 ITL---------------LDDDDGQGGQRRER------EFKVVIKLAARADLHHLGLFLQ 329
+ L + G ++R R FKV I AA+ + + L+
Sbjct: 128 VVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALR 187
Query: 330 GRQADAPQEALQVLDIVLRELPTTRYCPVGR-SFYSPDLGRRQPLGEGLESWRGFYQSIR 388
G++++ Q+AL+VLDI+LR+ + C + R SF+ D LG G+ RGF+ S R
Sbjct: 188 GQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFR 247
Query: 389 PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448
TQ GLSLNID+S+T ++P PV+DF+ + N++V P D K K+ L+ +RV+V+
Sbjct: 248 TTQGGLSLNIDVSTTMIVQPGPVVDFL--IANQNVRD-PFQ-IDWSKAKRMLKNLRVKVS 303
Query: 449 HRGNMRRKYRISGLTSQTTGELTFPV-------DESGTLK-SVVEYFYETYGFVIQHT-Q 499
N +Y+I+GL+ + E TF + +E T++ +V +YF + G ++++
Sbjct: 304 PS-NQ--EYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGD 360
Query: 500 WPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVH 559
PC+ VG +RP Y P+E+C +V QRY+K L+ Q ++L++ + Q+P ER + + +
Sbjct: 361 LPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALK 420
Query: 560 HNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMV 619
+ Y DP R GI IS + VE R+LPAP LK G +D P+ G+WN NKK+V
Sbjct: 421 SSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLK---VGNGEDFFPRNGRWNFNNKKLV 477
Query: 620 NGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAF-NPEPVIP--PISAR---PE 673
+ W +NFS R +L + + G+ P V P R P
Sbjct: 478 EPTKIERWAVVNFSARCD---IRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPV 534
Query: 674 HVEKVLKTRYHDAMTKLGQGKELDLLIVILPD-NNGSLYGDLKRICETDLGLVSQCCLTK 732
VEK+ + +KL + L+ ILP+ N +YG K+ ++ G+V+QC
Sbjct: 535 RVEKMFEQ----IQSKLPGPPQF--LLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAP- 587
Query: 733 HVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS 792
+++ QY+ NV LKIN K+GG N++L S IPLVS PTII G DV+H PG+
Sbjct: 588 --TRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSD 645
Query: 793 SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852
PSIAAVV+S+ WP +++Y V Q+ + E+I LFK PV G+I+ELL+ F
Sbjct: 646 VPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFK----PVGDKDDDGIIRELLLDF 701
Query: 853 RRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHH 911
++G+ KP++II +RDGVSE QF QVL ELD I +AC L+ ++ P T +V QK HH
Sbjct: 702 YTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHH 761
Query: 912 TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWD 971
T+ F D N+ PGTVVD+KICHP DFY+C+HAG+ GT+RP HYHVL D
Sbjct: 762 TKFFQAGSPD--------NVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLD 813
Query: 972 ENKFTADGLQSLTNNLCY 989
E F+AD LQ L ++L Y
Sbjct: 814 EIGFSADDLQELVHSLSY 831
|
Length = 900 |
| >gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|216915 pfam02171, Piwi, Piwi domain | Back alignment and domain information |
|---|
| >gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives | Back alignment and domain information |
|---|
| >gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|221759 pfam12764, Gly-rich_Ago1, Glycine-rich region of argonaut | Back alignment and domain information |
|---|
| >gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) | Back alignment and domain information |
|---|
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein | Back alignment and domain information |
|---|
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38 | Back alignment and domain information |
|---|
| >gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) | Back alignment and domain information |
|---|
| >gnl|CDD|216868 pfam02084, Bindin, Bindin | Back alignment and domain information |
|---|
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
| >gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|197548 smart00157, PRP, Major prion protein | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517) | Back alignment and domain information |
|---|
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2 | Back alignment and domain information |
|---|
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B | Back alignment and domain information |
|---|
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 990 | |||
| PLN03202 | 900 | protein argonaute; Provisional | 100.0 | |
| KOG1041 | 876 | consensus Translation initiation factor 2C (eIF-2C | 100.0 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 100.0 | |
| cd04657 | 426 | Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut | 100.0 | |
| cd04658 | 448 | Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain | 100.0 | |
| cd02826 | 393 | Piwi-like Piwi-like: PIWI domain. Domain found in | 100.0 | |
| PF02171 | 302 | Piwi: Piwi domain; InterPro: IPR003165 This domain | 100.0 | |
| cd04659 | 404 | Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI | 100.0 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.89 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 99.84 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 99.83 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.75 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.47 | |
| PF08699 | 52 | DUF1785: Domain of unknown function (DUF1785); Int | 99.47 | |
| PF12764 | 104 | Gly-rich_Ago1: Glycine-rich region of argonaut; In | 99.32 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 98.7 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 98.7 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 98.58 | |
| COG1431 | 685 | Argonaute homolog, implicated in RNA metabolism [T | 98.27 | |
| PF12764 | 104 | Gly-rich_Ago1: Glycine-rich region of argonaut; In | 96.49 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.3 | |
| COG4371 | 334 | Predicted membrane protein [Function unknown] | 90.09 | |
| smart00157 | 217 | PRP Major prion protein. The prion protein is a ma | 88.71 | |
| PF05642 | 727 | Sporozoite_P67: Sporozoite P67 surface antigen; In | 85.22 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 81.53 |
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-154 Score=1420.62 Aligned_cols=766 Identities=38% Similarity=0.654 Sum_probs=660.4
Q ss_pred CCCCCccCcCCCCCCCCCCcceEeeceEEEecC--CCceEEEEEEecC----CCCchhhHHHHHHHHHHHHHhhccCCcc
Q 001961 194 PSSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITP----EVTSRGVNRAVMEQLVKLYRESHLGKRL 267 (990)
Q Consensus 194 ~~~~~~~~p~RP~~Gt~G~~i~l~tN~f~i~~~--~~~iy~YdV~i~p----e~~~k~~~r~i~~~l~~~~~~~~~g~~~ 267 (990)
+..+...+++||++||.|++|.|+||||+|+++ +..||||||+|+| ++.+++++++|++++++++... +.+..
T Consensus 26 ~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~ 104 (900)
T PLN03202 26 PSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKD 104 (900)
T ss_pred ccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCc
Confidence 344444678899999999999999999999974 6789999999996 3455778899999888766443 44446
Q ss_pred ceEeCCceEEecCCCCCCcceEEEEEecCCCCC------------C---------CCCCCcEEEEEEEEeeEechhhHHH
Q 001961 268 PAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQ------------G---------GQRREREFKVVIKLAARADLHHLGL 326 (990)
Q Consensus 268 ~~yDG~k~lys~~~L~~~~~~~~v~l~~~~~~~------------~---------~~~~~~~~~V~Ik~~~~~~l~~l~~ 326 (990)
+||||+++|||+.+||++..+|.|++.+++++. . ...+.+.|+|+|++++++++.+|.+
T Consensus 105 ~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~ 184 (900)
T PLN03202 105 FAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIAN 184 (900)
T ss_pred eeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHH
Confidence 799999999999999987677888775421110 0 0124688999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHhcCCCCC-ccccCccccCCCCCCcccCCCcEEEEeeeeeeeeeccCceEEeeecccccc
Q 001961 327 FLQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAF 405 (990)
Q Consensus 327 ~l~g~~~~~~~~~iq~Lniilr~~~~~~-~~~~gr~ff~~~~~~~~~lg~g~e~~~G~~~Svr~~~~~l~LniD~s~~~F 405 (990)
||.+.....+.++||+||||||+.++.. ++.+||+||.++.....+++.|+|+|+||++|||+++++|+||||+++++|
T Consensus 185 ~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F 264 (900)
T PLN03202 185 ALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 264 (900)
T ss_pred HHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeee
Confidence 9999877788999999999999987655 889999999865444567899999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcccEEEEeecCCccceEEEecccCCCCcceeeeecCC--------
Q 001961 406 IEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES-------- 477 (990)
Q Consensus 406 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~-------- 477 (990)
|++++|+|+|.++.+... ....++.++.++|+|++|.++|+ +++|+|.+|++.++++.+|++++.
T Consensus 265 ~~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~ 337 (900)
T PLN03202 265 VQPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVE 337 (900)
T ss_pred ecCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCC
Confidence 999999999998764321 11234567999999999999998 479999999999999999986421
Q ss_pred CceeeHHHHHHHHcCCcccCC-CCceEEeccCCcCccccccceeeccCcccccCCCHHHHHHHHHhhcCCchHHHHHHHH
Q 001961 478 GTLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQ 556 (990)
Q Consensus 478 g~~iSV~eYf~~~Y~i~L~~p-~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~i~~ 556 (990)
+++|||+|||+++|||+|+|| +||||++++..+++|||||||.|+++|+++++|++.|+++||++|+.+|.+|.+.|.+
T Consensus 338 ~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~ 417 (900)
T PLN03202 338 TVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTD 417 (900)
T ss_pred cceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHH
Confidence 358999999999999999996 9999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCccccccCeEEcccceEeeeEEeCCCceeeccCCCccccCCcCccccccCceeeeCceeceeEEEEecCCc
Q 001961 557 TVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHV 636 (990)
Q Consensus 557 ~~~~~~~~~~~~l~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~l~~W~vv~~~~~~ 636 (990)
+++.++++.+++|++|||+|+++|++|+|||||+|+|.|+++. .+.|.+|+||+++++|+.++++++|+||+|.+.
T Consensus 418 ~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~- 493 (900)
T PLN03202 418 ALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR- 493 (900)
T ss_pred HHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc-
Confidence 9988888889999999999999999999999999999998642 245789999999999999999999999988644
Q ss_pred chHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCC--chhHHHHHHHHHHHHHhhcCCCCCccEEEEEecCC-CCchhHH
Q 001961 637 QDSIARGFCFELAQMCYISGMAFNPEPVIPPISAR--PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGD 713 (990)
Q Consensus 637 ~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~--~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ilp~~-~~~~Y~~ 713 (990)
..++.|++.|.+.|+.+||.+..++.+.....+ ....+..++..++++.++++ ..++|||||||++ +.++|+.
T Consensus 494 --~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~ 569 (900)
T PLN03202 494 --CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGP 569 (900)
T ss_pred --hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHH
Confidence 257899999999999999999764322111110 01112334455544444332 4689999999974 6789999
Q ss_pred HHHHhhhccCeeeeeeeeccccccchhHHHHHHHHHHHhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCC
Q 001961 714 LKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSS 793 (990)
Q Consensus 714 iK~~~~~~~gI~TQci~~~t~~k~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~~ 793 (990)
||++||+++||+||||... +.++||++|||||||+||||+||.+..+.+..+|++.+.+|||||+||+||+++....
T Consensus 570 IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~ 646 (900)
T PLN03202 570 WKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDV 646 (900)
T ss_pred HHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCC
Confidence 9999999999999999654 3478999999999999999999988765445678888889999999999999886557
Q ss_pred CceeEEEEeecCCCccceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHHHHHh-CCCCceEEEEecCCCc
Q 001961 794 PSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRAT-GQKPQRIIFYRDGVSE 872 (990)
Q Consensus 794 pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f~~~~-g~~P~~IIiyRDGVse 872 (990)
|||||||||+||+++++|++.+++|.+++|+|++|+.+..+ ..+++||+++|+.|++.+ +.+|++||||||||||
T Consensus 647 pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVse 722 (900)
T PLN03202 647 PSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSE 722 (900)
T ss_pred CceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCH
Confidence 99999999999888999999999999999999988533221 235799999999999876 6899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCcceeeccccCCCcccEEEe
Q 001961 873 GQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLC 952 (990)
Q Consensus 873 gq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~ 952 (990)
|||.+|+++|+++|++||++++++|+|+||||||+||||||||+.+ +.+||+||||||++||||.+||||||
T Consensus 723 GQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~ 794 (900)
T PLN03202 723 SQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMC 794 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEe
Confidence 9999999999999999999998899999999999999999999853 35899999999999999999999999
Q ss_pred eccCccccccCCeeEEEecCCCCCHHHHHHHHHHhhcC
Q 001961 953 SHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 990 (990)
Q Consensus 953 Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~LC~~ 990 (990)
||+++|||||||||+||+||+++++|+||+|||+|||+
T Consensus 795 Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~ 832 (900)
T PLN03202 795 AHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYV 832 (900)
T ss_pred cccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999996
|
|
| >KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >cd02826 Piwi-like Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] | Back alignment and domain information |
|---|
| >cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria | Back alignment and domain information |
|---|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO | Back alignment and domain information |
|---|
| >PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
| >COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins | Back alignment and domain information |
|---|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4371 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00157 PRP Major prion protein | Back alignment and domain information |
|---|
| >PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens | Back alignment and domain information |
|---|
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 990 | ||||
| 4f3t_A | 861 | Human Argonaute-2 - Mir-20a Complex Length = 861 | 1e-176 | ||
| 4ei1_A | 859 | Crystal Structure Of Human Argonaute2 Length = 859 | 1e-175 | ||
| 3vna_A | 154 | Structural Insights Into Small Rna Sorting And Mrna | 2e-77 | ||
| 4g0p_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 3e-76 | ||
| 3vnb_A | 155 | Structural Insights Into Small Rna Sorting And Mrna | 3e-74 | ||
| 4g0x_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 3e-72 | ||
| 4f1n_A | 1046 | Crystal Structure Of Kluyveromyces Polysporus Argon | 4e-40 | ||
| 4g0o_A | 139 | Crystal Structure Of Arabidopsis Thaliana Ago5 Mid | 3e-37 | ||
| 2yhb_A | 437 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 2e-36 | ||
| 1r4k_A | 169 | Solution Structure Of The Drosophila Argonaute 1 Pa | 8e-29 | ||
| 1si2_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 1e-26 | ||
| 1si3_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 3e-25 | ||
| 2yha_A | 388 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 6e-20 | ||
| 4g0m_A | 150 | Crystal Structure Of Arabidopsis Thaliana Ago2 Mid | 8e-12 | ||
| 3luc_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 5e-09 | ||
| 3luk_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 6e-08 | ||
| 1r6z_P | 509 | The Crystal Structure Of The Argonaute2 Paz Domain | 4e-07 | ||
| 1vyn_A | 143 | Structure And Nucleic Acid Binding Of The Drosophil | 6e-07 | ||
| 1t2r_A | 123 | Structural Basis For 3' End Recognition Of Nucleic | 8e-06 | ||
| 3mj0_A | 124 | Crystal Structure Of Drosophia Ago-Paz Domain In Co | 9e-06 | ||
| 2xdy_A | 145 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do | 1e-04 |
| >pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 | Back alignment and structure |
|
| >pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 | Back alignment and structure |
| >pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 | Back alignment and structure |
| >pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 | Back alignment and structure |
| >pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 | Back alignment and structure |
| >pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 | Back alignment and structure |
| >pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 | Back alignment and structure |
| >pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 | Back alignment and structure |
| >pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 | Back alignment and structure |
| >pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 | Back alignment and structure |
| >pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 | Back alignment and structure |
| >pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 | Back alignment and structure |
| >pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 | Back alignment and structure |
| >pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 | Back alignment and structure |
| >pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
| >pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
| >pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 | Back alignment and structure |
| >pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 | Back alignment and structure |
| >pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 | Back alignment and structure |
| >pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 | Back alignment and structure |
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 990 | |||
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 100.0 | |
| 4f1n_A | 1046 | Kpago; argonaute, RNAI, RNAse H, RNA binding prote | 100.0 | |
| 1yvu_A | 706 | Hypothetical protein AQ_1447; RNAse H fold, RNA bi | 100.0 | |
| 2yhb_A | 437 | QDE-2, post-transcriptional gene silencing protein | 100.0 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 100.0 | |
| 3ho1_A | 685 | Argonaute; argonaute, protein-DNA-RNA complex, nuc | 100.0 | |
| 2yha_A | 388 | Post-transcriptional gene silencing protein QDE-2; | 100.0 | |
| 2w42_A | 427 | PIWI, putative uncharacterized protein; RNAI, RISC | 100.0 | |
| 4g0x_A | 147 | Protein argonaute 1; MID domain, small RNA 5' nucl | 99.96 | |
| 4g0o_A | 139 | Protein argonaute 5; MID domain, small RNA 5' nucl | 99.95 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 99.95 | |
| 3luc_A | 138 | Protein argonaute-2; MID domain, ribonucleoprotein | 99.94 | |
| 4g0m_A | 150 | Protein argonaute 2; MID domain, small RNA 5' nucl | 99.94 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 99.91 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.9 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 99.89 | |
| 1r6z_P | 509 | Chimera of maltose-binding periplasmic protein AN | 99.82 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.81 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 98.53 |
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-163 Score=1508.10 Aligned_cols=766 Identities=43% Similarity=0.766 Sum_probs=669.8
Q ss_pred CCCCCCCccCcCCCCCCCCCCcceEeeceEEEecCCCceEEEEEEecCCCCchhhHHHHHHHHHHHHHhhccCCccceEe
Q 001961 192 APPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYD 271 (990)
Q Consensus 192 ~p~~~~~~~~p~RP~~Gt~G~~i~l~tN~f~i~~~~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~g~~~~~yD 271 (990)
+|.+++.+.+|.||++||.|++|.|+||||+|+++++.||||||+|+|+..+++++|+||+++++.++...+++..+|||
T Consensus 18 ~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 18 PPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred CccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEc
Confidence 34556678899999999999999999999999999889999999999999889999999999988775555777777999
Q ss_pred CCceEEecCCCCCCcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeEechhhHHHHhcCCCCCChHHHHHHHHHHHhcCC
Q 001961 272 GRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELP 351 (990)
Q Consensus 272 G~k~lys~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~iq~Lniilr~~~ 351 (990)
|+++|||+.+||+++..+++.+.... ..+++.|+|+|++++++++++|.+||.|.....+.++||+||||||+.+
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~~-----~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~ 172 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLPG-----EGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLP 172 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHH
T ss_pred CcceEEECCcCCCCCcceEEEEecCC-----CCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhc
Confidence 99999999999986654444442211 1356789999999999999999999999988888999999999999988
Q ss_pred CCCccccCccccCCCCCCcccCCCcEEEEeeeeeeeeeccCceEEeeeccccccccCccHHHHHHHHhcCCCC---CCCC
Q 001961 352 TTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVS---SRPL 428 (990)
Q Consensus 352 ~~~~~~~gr~ff~~~~~~~~~lg~g~e~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~~~~~~~~~~~---~~~~ 428 (990)
+++|..+||+||++..+...++++|+|+|+||++|||+++++|+||||+++++|++++||+|+|.++++..+. .+++
T Consensus 173 ~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~ 252 (861)
T 4f3t_A 173 SMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPL 252 (861)
T ss_dssp HHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCC
T ss_pred cccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhcccc
Confidence 8899999999998765445678999999999999999999999999999999999999999999999875432 3457
Q ss_pred ChHHHHHHHHHhcccEEEEeecCCccceEEEecccCCCCcceeeeec-CCC--ceeeHHHHHHHHcCCcccCCCCceEEe
Q 001961 429 SDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESG--TLKSVVEYFYETYGFVIQHTQWPCLQV 505 (990)
Q Consensus 429 ~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~-~~g--~~iSV~eYf~~~Y~i~L~~p~lP~l~~ 505 (990)
++.++.+++++|+|++|.++|.+..+|+|+|.+|++.++++.+|.++ ++| ++|||+|||+++|||+|+||+||||++
T Consensus 253 ~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~ 332 (861)
T 4f3t_A 253 TDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQV 332 (861)
T ss_dssp CHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEE
T ss_pred CHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEe
Confidence 78889999999999999999976557899999999988899999753 334 379999999999999999999999999
Q ss_pred ccCCcCccccccceeeccCcccccCCCHHHHHHHHHhhcCCchHHHHHHHHHHHhccCCCCccccccCeEEcccceEeee
Q 001961 506 GNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEA 585 (990)
Q Consensus 506 g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~a 585 (990)
|++++++|||||||.|+|||++.++|+++|+++|||+|+.+|.+|.+.|.++++.+.++.+++|++|||+|+++|++|+|
T Consensus 333 g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~g 412 (861)
T 4f3t_A 333 GQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTG 412 (861)
T ss_dssp SCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEE
T ss_pred cCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEEE
Confidence 98888999999999999999999999999999999999999999999999999888888889999999999999999999
Q ss_pred EEeCCCceeeccCCCccccCCcCccccccCceeeeCceeceeEEEEecC--CcchHHHHHHHHHHHHHHHhcCcccCCCC
Q 001961 586 RILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSR--HVQDSIARGFCFELAQMCYISGMAFNPEP 663 (990)
Q Consensus 586 rvL~~P~i~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~l~~W~vv~~~~--~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p 663 (990)
||||+|+|.|+++++ ..+.|.+|+|||++++|++++++++|+|++|.. .+..+.++.|++.|.+.|+.+||.+..+|
T Consensus 413 RvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p 491 (861)
T 4f3t_A 413 RVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQP 491 (861)
T ss_dssp EECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCC
T ss_pred EEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence 999999999986432 235688999999999999999999999999863 34577899999999999999999997656
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCccEEEEEecCCCCchhHHHHHHhhhccCeeeeeeeeccccccchhHHH
Q 001961 664 VIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMA 743 (990)
Q Consensus 664 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~~~q~~~ 743 (990)
.+.......+.++..++.+.+. ..++||||||||++ .++|+.||++||+++||+||||+.+++.|.++||+.
T Consensus 492 ~~~~~~~~~~~~~~~~~~l~~~-------~~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ 563 (861)
T 4f3t_A 492 CFCKYAQGADSVEPMFRHLKNT-------YAGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLS 563 (861)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH-------STTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHH
T ss_pred eEEEecCchHHHHHHHHHHHhh-------cCCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccccHHHHH
Confidence 5432222345566555544321 14689999999965 578999999999999999999999999988999999
Q ss_pred HHHHHHHHhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCccceeeEEEEccCChh
Q 001961 744 NVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQE 823 (990)
Q Consensus 744 Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E 823 (990)
|||||||+||||+||.+.+. ..|.+...+|||||+||+||+++....|||||||||+| .++++|.+.+++|.+++|
T Consensus 564 ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E 639 (861)
T 4f3t_A 564 NLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQE 639 (861)
T ss_dssp HHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCC
T ss_pred HHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCCcc
Confidence 99999999999999988653 23445568999999999999988667899999999999 789999999999999999
Q ss_pred hhhhhhccccCCCcccchhHHHHHHHHHHHHHhCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEE
Q 001961 824 LIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF 903 (990)
Q Consensus 824 ~i~~l~~~~~~~~~~~~~~~m~~~~L~~f~~~~g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~ 903 (990)
+|++| .+|++++|+.|+++++.+|++|||||||||||||.+|+++|+++|++||.+++.+|+|+|||
T Consensus 640 ~i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~ 706 (861)
T 4f3t_A 640 IIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITF 706 (861)
T ss_dssp SCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred HHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 99998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccccccCCCCCCCCCCCCCCCCcceeeccccCCCcccEEEeeccCccccccCCeeEEEecCCCCCHHHHHHH
Q 001961 904 VVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSL 983 (990)
Q Consensus 904 Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~l 983 (990)
|||+||||||||+.+.++ ..++.+||+||||||++||||.+||||||||+++|||||||||+||+||+++++|+||+|
T Consensus 707 Ivv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~l 784 (861)
T 4f3t_A 707 IVVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQIL 784 (861)
T ss_dssp EEEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHH
T ss_pred EEEEccccceeeecCCcc--cccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHH
Confidence 999999999999986532 235789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC
Q 001961 984 TNNLCYT 990 (990)
Q Consensus 984 t~~LC~~ 990 (990)
||+|||+
T Consensus 785 ty~Lc~~ 791 (861)
T 4f3t_A 785 TYQLCHT 791 (861)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 9999996
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 990 | ||||
| d1yvua2 | 392 | c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 | 4e-88 | |
| d1w9ha1 | 316 | c.55.3.10 (A:93-408) Hypothetical protein AF1318 { | 1e-66 | |
| d1u04a2 | 447 | c.55.3.10 (A:324-770) Argonaute homologue PF0537 { | 3e-59 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 3e-46 | |
| d1t2sa_ | 123 | b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila | 8e-46 | |
| d1u04a1 | 322 | b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py | 1e-13 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Score = 285 bits (731), Expect = 4e-88
Identities = 59/376 (15%), Positives = 120/376 (31%), Gaps = 70/376 (18%)
Query: 624 VNHWICINFSRHVQDSI-ARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTR 682
V I+ S + + F EL G+ + ++ E ++ L
Sbjct: 37 VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPV 96
Query: 683 YHDAMTKLGQGKELDLLIVILPDNNGS-------LYGDLKRICETDLGLVSQCCLTKHVF 735
+ K++DL+IV L + LY +KR + SQ L + +
Sbjct: 97 INKI-------KDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLK 148
Query: 736 KMSKQYMA-NVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP 794
+ +++ NVA ++ K G L + + + G D++ +
Sbjct: 149 NENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTVN 200
Query: 795 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR 854
++A E+ +Y L A ++L + I ++ +
Sbjct: 201 AVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK----------------AIGDVFSLLEK 243
Query: 855 ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRL 914
+K +I+ +RDG E+ A +K Y + + + KR++ R
Sbjct: 244 LGFKKGSKIVVHRDGRLYRD-------EVAAFKKYG----ELYGYSLELLEIIKRNNPRF 292
Query: 915 FANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENK 974
F+N + G + + +GT +P ++ E
Sbjct: 293 FSN-----------EKFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGELP 337
Query: 975 FTADGLQSLTNNLCYT 990
+ L S +L
Sbjct: 338 V--EVLCSQILSLTLM 351
|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 | Back information, alignment and structure |
|---|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 990 | |||
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1u04a2 | 447 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1w9ha1 | 316 | Hypothetical protein AF1318 {Archaeoglobus fulgidu | 100.0 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 99.97 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 99.93 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 99.93 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=1.6e-53 Score=481.61 Aligned_cols=307 Identities=18% Similarity=0.159 Sum_probs=238.2
Q ss_pred eeceeEEEEecC-CcchHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCccEEEE
Q 001961 623 TVNHWICINFSR-HVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIV 701 (990)
Q Consensus 623 ~l~~W~vv~~~~-~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ 701 (990)
.+..|.+|.+.. ...+..+++|+++|.+.|+..||++..+|..........+.+..|.+.+++ .+++++++|
T Consensus 36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~v 108 (392)
T d1yvua2 36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINK-------IKDVDLVIV 108 (392)
T ss_dssp SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTT-------TSSCSEEEE
T ss_pred ccccceEEEEEEeehhhhHHHHHHHHHHHHHHhcCceecCCCcCeeecCCccchHHHHHHHHhh-------ccCCCEEEE
Confidence 355677665421 123456799999999999999999975444433333344555555555432 256899999
Q ss_pred EecCCCC-------chhHHHHHHhhhccCeeeeeeeeccccccchh-HHHHHHHHHHHhcCccccccccccccCCCccCC
Q 001961 702 ILPDNNG-------SLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ-YMANVALKINVKVGGRNTVLVDAISRRIPLVSD 773 (990)
Q Consensus 702 ilp~~~~-------~~Y~~iK~~~~~~~gI~TQci~~~t~~k~~~q-~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~ 773 (990)
|++++.. ++|..||+.| ++.||+||||+.+|+.+.+.+ ++.||++|||+||||+||.|.+. | .
T Consensus 109 i~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~---~ 179 (392)
T d1yvua2 109 FLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----E---G 179 (392)
T ss_dssp EEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----T---T
T ss_pred EEcCCCCcccccchhHHHHHHHHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCCC-----C---C
Confidence 9987654 6899999998 789999999999999866655 57899999999999999988542 2 3
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCccceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFR 853 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f~ 853 (990)
.+|||||+||+|++++... ++++|++++.|......|+.....|..++|++. +++.++|..|+
T Consensus 180 ~~tmiIGiDv~h~~~~~~~-~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~----------------~~~~~~l~~~~ 242 (392)
T d1yvua2 180 KVDAFVGIDISRITRDGKT-VNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTE----------------KAIGDVFSLLE 242 (392)
T ss_dssp CCSEEEEECEEECCCSSSC-CCEEEEEEEECTTSCEEEEEEEEECSCTTHHHH----------------HHHHHHHHHHH
T ss_pred CCeEEEEEEEEecCCCCCc-ccEEEEEEEEcCCCCEEEEEEEecCCccHHHHH----------------HHHHHHHHHHH
Confidence 6899999999999876543 444555555551233445555667777777664 46889999999
Q ss_pred HHhCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCC
Q 001961 854 RATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILP 933 (990)
Q Consensus 854 ~~~g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~p 933 (990)
+.++.+|++|||||||+.+ ++|+++|++||+++ .|+||||+|+||||+|||+. .|+++
T Consensus 243 ~~~~~~P~rIIi~RdG~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~-----------~~~~~ 300 (392)
T d1yvua2 243 KLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSN-----------EKFIK 300 (392)
T ss_dssp HTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECS-----------CSCCT
T ss_pred HhcCCCCceEEEEeCCCCc-------HHHHHHHHHHHHhc----CCcEEEEEEEecCCeeecCC-----------CCCCC
Confidence 9999999999999999865 56999999999876 58999999999999999973 25677
Q ss_pred cceeeccccCCCcccEEEeeccCccccccCCeeEEEecCCCCCHHHHHHHHHHhhcC
Q 001961 934 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 990 (990)
Q Consensus 934 GTvVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~LC~~ 990 (990)
||+|+ .+..++|||+||.++|||+||+||+||+||+ +.|+||+|||+|||+
T Consensus 301 Gt~v~----~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l 351 (392)
T d1yvua2 301 GYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLM 351 (392)
T ss_dssp TEEEE----BSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGG
T ss_pred CCEEe----CCCCeEEEEEcCCcCCCCCCCcEEEEECCCC--CHHHHHHHHHHHHhh
Confidence 99985 4678899999999999999999999999996 569999999999996
|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|