Citrus Sinensis ID: 002001
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 983 | 2.2.26 [Sep-21-2011] | |||||||
| O81644 | 976 | Villin-2 OS=Arabidopsis t | yes | no | 0.985 | 0.992 | 0.727 | 0.0 | |
| O81645 | 965 | Villin-3 OS=Arabidopsis t | no | no | 0.981 | 1.0 | 0.739 | 0.0 | |
| O65570 | 974 | Villin-4 OS=Arabidopsis t | no | no | 0.974 | 0.983 | 0.480 | 0.0 | |
| O81643 | 909 | Villin-1 OS=Arabidopsis t | no | no | 0.789 | 0.853 | 0.412 | 1e-176 | |
| Q5ZIV9 | 717 | Adseverin OS=Gallus gallu | yes | no | 0.695 | 0.953 | 0.343 | 1e-110 | |
| Q29261 | 827 | Villin-1 OS=Sus scrofa GN | yes | no | 0.685 | 0.814 | 0.352 | 1e-110 | |
| Q27319 | 754 | Gelsolin, cytoplasmic OS= | N/A | no | 0.701 | 0.915 | 0.344 | 1e-109 | |
| O93510 | 778 | Gelsolin OS=Gallus gallus | no | no | 0.691 | 0.874 | 0.353 | 1e-108 | |
| P20305 | 772 | Gelsolin (Fragment) OS=Su | no | no | 0.695 | 0.886 | 0.348 | 1e-107 | |
| Q62468 | 827 | Villin-1 OS=Mus musculus | yes | no | 0.691 | 0.822 | 0.350 | 1e-107 |
| >sp|O81644|VILI2_ARATH Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1457 bits (3771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/986 (72%), Positives = 828/986 (83%), Gaps = 17/986 (1%)
Query: 4 SAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLY 63
S K LDPAFQGAGQ+ GTEIWRIENF+ VP+PKSEHGKFYMGD YIVLQTT KGGAYL+
Sbjct: 2 STKVLDPAFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLF 61
Query: 64 DIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEG 123
DIHFWIGKDTSQDEAGTAA+KTVELDAVLGGRAVQHRE+QGHESDKFLSYFKPCIIPLEG
Sbjct: 62 DIHFWIGKDTSQDEAGTAAVKTVELDAVLGGRAVQHREIQGHESDKFLSYFKPCIIPLEG 121
Query: 124 GVASGFRKTEEEEFETRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGAN 183
GVASGF+ EEE FETRLY CKGKR +R+KQVPFARSSLNHDDVFILDT++KIYQFNGAN
Sbjct: 122 GVASGFKTVEEEVFETRLYTCKGKRAIRLKQVPFARSSLNHDDVFILDTEEKIYQFNGAN 181
Query: 184 SNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVAT 243
SNIQERAKALEV+Q+LK+KYH+G C+VAIVDDGKLDTESDSG FWVLFGGFAPIG+KVA
Sbjct: 182 SNIQERAKALEVVQYLKDKYHEGTCDVAIVDDGKLDTESDSGAFWVLFGGFAPIGRKVAN 241
Query: 244 EDDVIAETTPPKLYSIEDSQVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEER 303
+DD++ E+TPPKLY I D +++ ++G+LSKSMLEN KCYLLD G+E+++WVGRVTQV+ER
Sbjct: 242 DDDIVPESTPPKLYCITDGKMEPIDGDLSKSMLENTKCYLLDCGAEIYIWVGRVTQVDER 301
Query: 304 KAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGRGKVAAL 363
KAASQ+AEEF++S+NRPK+ +TRVIQGYE+++FKSNFDSWPSGS PG EEGRGKVAAL
Sbjct: 302 KAASQSAEEFLASENRPKATHVTRVIQGYESHSFKSNFDSWPSGSATPGNEEGRGKVAAL 361
Query: 364 LKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIV 423
LKQQGVG+KG+ KS P NE++PPLLE GGK+EVW +NG KT LPKEDIGK YSGDCY+V
Sbjct: 362 LKQQGVGLKGIAKSAPVNEDIPPLLESGGKLEVWYVNGKVKTPLPKEDIGKLYSGDCYLV 421
Query: 424 LYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQF 483
LYTYHSG+RK++YFL CWFGK SI EDQ A RLANTM NSLKGRPVQGRI++G+EPPQF
Sbjct: 422 LYTYHSGERKDEYFLSCWFGKKSIPEDQDTAIRLANTMSNSLKGRPVQGRIYEGKEPPQF 481
Query: 484 VALFQPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVAT 543
VALFQPMVV+KGGL SGYK S+ + TDETYT +SIAL+++SGT +HNNK QV+ VAT
Sbjct: 482 VALFQPMVVLKGGLSSGYKSSMGESESTDETYTPESIALVQVSGTGVHNNKAVQVETVAT 541
Query: 544 SLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFP 603
SLNS ECFLLQSG++MF WHGNQST EQ +LA KVAEFLKPG+ +KHAKEGTESS FWF
Sbjct: 542 SLNSYECFLLQSGTSMFLWHGNQSTHEQLELATKVAEFLKPGITLKHAKEGTESSTFWFA 601
Query: 604 LGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNFSQDDLLTEDILILDTHAEVF 663
LGGKQ++TSKK S E +RDPHLF+F+FN+GKF+VEE+YNF+QDDLLTEDI LDTHAEVF
Sbjct: 602 LGGKQNFTSKKASSETIRDPHLFSFAFNRGKFQVEEIYNFAQDDLLTEDIYFLDTHAEVF 661
Query: 664 VWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPCFCTTFFSWDPTK 723
VWVGQ V+ KEKQ+ FE GQ YID+A SLEGL PKVP+YK+ EGNEPCF TT+FSWD TK
Sbjct: 662 VWVGQCVEPKEKQTVFEIGQKYIDLAGSLEGLHPKVPIYKINEGNEPCFFTTYFSWDATK 721
Query: 724 ATVQGNSFQKKVALLFGASHAAEDKSHANQGGPTQRASALAALSSAFNPSSERSTSPSHD 783
A VQGNSFQKK +LLFG H EDKS+ G QRA ALAAL+SAFN SS R S D
Sbjct: 722 AIVQGNSFQKKASLLFGTHHVVEDKSNGGNQGLRQRAEALAALNSAFNSSSNRPAYSSQD 781
Query: 784 RSNGSNQGGPTQRASALAALSSAFKSSPGTKASAPKTS--GSGQGSQRAAAVAALSQVLS 841
R N S+ GP QRA ALAALSSAF SS + S P G+ Q SQRAAAVAALSQVL
Sbjct: 782 RLNESHD-GPRQRAEALAALSSAFNSSSSSTKSPPPPRPVGTSQASQRAAAVAALSQVLV 840
Query: 842 AEKKRSPDTSPTR--TSGSPTAETSLSSEPKAEYAHSESEASEQVG-DVKETEEVVPVSE 898
AE K+SPDTSPTR TS +P + L+ A E EASE G + KE EEV P +
Sbjct: 841 AENKKSPDTSPTRRSTSSNPADDIPLTE------AKDEEEASEVAGLEAKEEEEVSPAA- 893
Query: 899 SNGDDSETKQVT-EQDENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLSDEEFQTV 957
D++E KQ T EQ ++ + S +TF+Y+QL+A+S+NPVTGIDFKRREAYLS+EEFQ+V
Sbjct: 894 ---DETEAKQETEEQGDSEIQPSGATFTYEQLRAKSENPVTGIDFKRREAYLSEEEFQSV 950
Query: 958 FGMMKEAFYKLPKWKQDMQKKKFDLF 983
FG+ KEAF LP+WKQD+ KKKFDLF
Sbjct: 951 FGIEKEAFNNLPRWKQDLLKKKFDLF 976
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Ca(2+)-regulated actin-binding protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O81645|VILI3_ARATH Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=2 | Back alignment and function description |
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| >sp|O65570|VILI4_ARATH Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1 | Back alignment and function description |
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| >sp|O81643|VILI1_ARATH Villin-1 OS=Arabidopsis thaliana GN=VLN1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5ZIV9|ADSV_CHICK Adseverin OS=Gallus gallus GN=SCIN PE=2 SV=2 | Back alignment and function description |
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| >sp|Q29261|VILI_PIG Villin-1 OS=Sus scrofa GN=VIL1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q27319|GELS_HOMAM Gelsolin, cytoplasmic OS=Homarus americanus PE=1 SV=1 | Back alignment and function description |
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| >sp|O93510|GELS_CHICK Gelsolin OS=Gallus gallus GN=GSN PE=2 SV=1 | Back alignment and function description |
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| >sp|P20305|GELS_PIG Gelsolin (Fragment) OS=Sus scrofa GN=GSN PE=1 SV=1 | Back alignment and function description |
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| >sp|Q62468|VILI_MOUSE Villin-1 OS=Mus musculus GN=Vil1 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 983 | ||||||
| 224138062 | 975 | predicted protein [Populus trichocarpa] | 0.982 | 0.990 | 0.815 | 0.0 | |
| 224090123 | 954 | predicted protein [Populus trichocarpa] | 0.968 | 0.997 | 0.819 | 0.0 | |
| 297739645 | 952 | unnamed protein product [Vitis vinifera] | 0.962 | 0.993 | 0.787 | 0.0 | |
| 225441852 | 952 | PREDICTED: villin-2-like [Vitis vinifera | 0.962 | 0.993 | 0.787 | 0.0 | |
| 449437631 | 986 | PREDICTED: villin-2-like [Cucumis sativu | 1.0 | 0.996 | 0.777 | 0.0 | |
| 356534770 | 973 | PREDICTED: villin-2-like isoform 1 [Glyc | 0.988 | 0.998 | 0.771 | 0.0 | |
| 356500511 | 964 | PREDICTED: villin-2-like [Glycine max] | 0.979 | 0.998 | 0.773 | 0.0 | |
| 356534772 | 964 | PREDICTED: villin-2-like isoform 2 [Glyc | 0.979 | 0.998 | 0.768 | 0.0 | |
| 356572028 | 984 | PREDICTED: villin-2-like [Glycine max] | 0.995 | 0.994 | 0.762 | 0.0 | |
| 356504781 | 984 | PREDICTED: villin-2-like [Glycine max] | 0.995 | 0.994 | 0.762 | 0.0 |
| >gi|224138062|ref|XP_002322720.1| predicted protein [Populus trichocarpa] gi|222867350|gb|EEF04481.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1630 bits (4220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/992 (81%), Positives = 882/992 (88%), Gaps = 26/992 (2%)
Query: 1 MSTSAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGA 60
MS+SAK+LDPAFQG GQR GTEIWRIENFQPVPLPKS+HGKFYMGD YIVLQTT GKGGA
Sbjct: 1 MSSSAKALDPAFQGVGQRPGTEIWRIENFQPVPLPKSDHGKFYMGDSYIVLQTTTGKGGA 60
Query: 61 YLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIP 120
YLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIP
Sbjct: 61 YLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIP 120
Query: 121 LEGGVASGFRKTEEEEFETRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFN 180
LEGGVA+GF+K EEE FE RLYVC+GKRVVR+KQVPFARSSLNHDDVFILDT+ KIYQFN
Sbjct: 121 LEGGVATGFKKVEEEAFEIRLYVCRGKRVVRLKQVPFARSSLNHDDVFILDTEKKIYQFN 180
Query: 181 GANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKK 240
GANSNIQER KALEVIQFLKEKYH+G C+VAIVDDGKLDTESDSGEFWVLFGGFAPIGKK
Sbjct: 181 GANSNIQERGKALEVIQFLKEKYHEGTCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKK 240
Query: 241 VATEDDVIAETTPPKLYSIEDSQVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQV 300
VA EDD+I ETTP KLYSI D +VKIVEGELSK +LENNKCYLLD G+E+FVWVGRVTQV
Sbjct: 241 VANEDDIIPETTPAKLYSITDGEVKIVEGELSKGLLENNKCYLLDCGAEIFVWVGRVTQV 300
Query: 301 EERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGRGKV 360
EERKAASQAAEEF++SQNRPK+ ++TR+IQGYET +FK+NFDSWP+GS APGAEEGRGKV
Sbjct: 301 EERKAASQAAEEFVASQNRPKTTQLTRLIQGYETRSFKTNFDSWPAGSAAPGAEEGRGKV 360
Query: 361 AALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYSGDC 420
AALLKQQGVG+KGM KS P NEEVPPLLEGGGKMEVW INGS+KT LPKED+GKFYSGDC
Sbjct: 361 AALLKQQGVGLKGMTKSAPVNEEVPPLLEGGGKMEVWCINGSSKTPLPKEDVGKFYSGDC 420
Query: 421 YIVLYTYHSGDRKEDYFLCCWFGKDS-------IEEDQKMATRLANTMCNSLKGRPVQGR 473
YI+LYTYHSGDRKEDY LCCWFG DS I+EDQKMA RLANTM NSLKGRPVQGR
Sbjct: 421 YIILYTYHSGDRKEDYLLCCWFGNDSSEIHGHPIQEDQKMAARLANTMSNSLKGRPVQGR 480
Query: 474 IFQGREPPQFVALFQPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNN 533
IFQG+EPPQFVALFQP+V++KGGL SGYKKS+A+KGL+DETYTADS+AL RISGTS+HN+
Sbjct: 481 IFQGKEPPQFVALFQPIVILKGGLSSGYKKSIAEKGLSDETYTADSVALFRISGTSVHND 540
Query: 534 KTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKE 593
K QVDAVATSLNS+ECFLLQSGS++FTWHGNQSTFEQQQLAAK+AEFLKPGVA+KHAKE
Sbjct: 541 KAVQVDAVATSLNSAECFLLQSGSSIFTWHGNQSTFEQQQLAAKIAEFLKPGVALKHAKE 600
Query: 594 GTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNFSQDDLLTEDI 653
GTESSAFWF LGGKQSYTSKK SPE VRDPHLFTFSFNKGKF+VEEVYNFSQDDLLTEDI
Sbjct: 601 GTESSAFWFALGGKQSYTSKKFSPETVRDPHLFTFSFNKGKFQVEEVYNFSQDDLLTEDI 660
Query: 654 LILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPCFC 713
LILDTHAEVFVWVGQ VD KEKQ+ F+ GQ YI+MA SL+GLSP VPLYKVTEGNEP F
Sbjct: 661 LILDTHAEVFVWVGQYVDPKEKQNVFDIGQKYIEMAVSLDGLSPNVPLYKVTEGNEPSFF 720
Query: 714 TTFFSWDPTKATVQGNSFQKKVALLFG-ASHAAEDKSHANQGGPTQRASALAALSSAFNP 772
TT+FSWD TKATVQGNSFQKK ALLFG H E++S+ NQGGPTQRASALAALSSAFNP
Sbjct: 721 TTYFSWDLTKATVQGNSFQKKAALLFGLGHHVVEERSNGNQGGPTQRASALAALSSAFNP 780
Query: 773 SSERSTSPSHDRSNGSNQGGPTQRASALAALSSAFKSSPGTKASAPKTSGSGQGSQRAAA 832
SS +S+ DRSNGSNQGG TQRASALAALSSAF SSPG+K +A + SG+GQGSQR AA
Sbjct: 781 SSGKSS--LLDRSNGSNQGGTTQRASALAALSSAFNSSPGSKTTASRPSGTGQGSQRRAA 838
Query: 833 VAALSQVLSAEKKRSPDTSPTRTSGSPTAETSLSSEPKAEYAHSESEASEQVGDVKETEE 892
VAALS VL+AEKK++P+TSP+R SP +ET+L E SE V +VKE EE
Sbjct: 839 VAALSSVLTAEKKQTPETSPSR---SPPSETNL------------PEGSEGVAEVKEMEE 883
Query: 893 VVPVSESN-GDDSETKQVTEQDENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLSD 951
VSESN G+DSE KQ TE E+ +STF YDQLKA SDNPV GIDFKRREAYLSD
Sbjct: 884 TASVSESNGGEDSERKQDTEHGESDDGNGQSTFCYDQLKAHSDNPVKGIDFKRREAYLSD 943
Query: 952 EEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
EEFQT+FG+ KEAFYK+PKWKQDMQKKKFDLF
Sbjct: 944 EEFQTIFGVTKEAFYKMPKWKQDMQKKKFDLF 975
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090123|ref|XP_002308941.1| predicted protein [Populus trichocarpa] gi|222854917|gb|EEE92464.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297739645|emb|CBI29827.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225441852|ref|XP_002284163.1| PREDICTED: villin-2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449437631|ref|XP_004136595.1| PREDICTED: villin-2-like [Cucumis sativus] gi|449520821|ref|XP_004167431.1| PREDICTED: villin-2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356534770|ref|XP_003535925.1| PREDICTED: villin-2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356500511|ref|XP_003519075.1| PREDICTED: villin-2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356534772|ref|XP_003535926.1| PREDICTED: villin-2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356572028|ref|XP_003554172.1| PREDICTED: villin-2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356504781|ref|XP_003521173.1| PREDICTED: villin-2-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 983 | ||||||
| TAIR|locus:2054401 | 976 | VLN2 "villin 2" [Arabidopsis t | 0.986 | 0.993 | 0.670 | 0.0 | |
| TAIR|locus:2082523 | 965 | VLN3 "villin 3" [Arabidopsis t | 0.920 | 0.937 | 0.678 | 0.0 | |
| TAIR|locus:2165570 | 962 | VLN5 "villin 5" [Arabidopsis t | 0.758 | 0.775 | 0.501 | 1.4e-229 | |
| RGD|1307048 | 827 | Vil1 "villin 1" [Rattus norveg | 0.692 | 0.823 | 0.342 | 1e-109 | |
| UNIPROTKB|F1SRY3 | 827 | VIL1 "Villin-1" [Sus scrofa (t | 0.694 | 0.825 | 0.343 | 1.2e-108 | |
| UNIPROTKB|P02640 | 826 | VIL1 "Villin-1" [Gallus gallus | 0.690 | 0.822 | 0.331 | 1.2e-108 | |
| UNIPROTKB|Q29261 | 827 | VIL1 "Villin-1" [Sus scrofa (t | 0.694 | 0.825 | 0.343 | 1.5e-108 | |
| UNIPROTKB|F1ND31 | 828 | VIL1 "Villin-1" [Gallus gallus | 0.695 | 0.826 | 0.333 | 3.9e-108 | |
| MGI|MGI:98930 | 827 | Vil1 "villin 1" [Mus musculus | 0.692 | 0.823 | 0.335 | 1.3e-107 | |
| UNIPROTKB|E2RPX1 | 827 | VIL1 "Uncharacterized protein" | 0.694 | 0.825 | 0.336 | 2.7e-107 |
| TAIR|locus:2054401 VLN2 "villin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3504 (1238.5 bits), Expect = 0., P = 0.
Identities = 660/985 (67%), Positives = 770/985 (78%)
Query: 4 SAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLY 63
S K LDPAFQGAGQ+ GTEIWRIENF+ VP+PKSEHGKFYMGD YIVLQTT KGGAYL+
Sbjct: 2 STKVLDPAFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLF 61
Query: 64 DIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEG 123
DIHFWIGKDTSQDEAGTAA+KTVELDAVLGGRAVQHRE+QGHESDKFLSYFKPCIIPLEG
Sbjct: 62 DIHFWIGKDTSQDEAGTAAVKTVELDAVLGGRAVQHREIQGHESDKFLSYFKPCIIPLEG 121
Query: 124 GVASGFRKTXXXXXXTRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGAN 183
GVASGF+ TRLY CKGKR +R+KQVPFARSSLNHDDVFILDT++KIYQFNGAN
Sbjct: 122 GVASGFKTVEEEVFETRLYTCKGKRAIRLKQVPFARSSLNHDDVFILDTEEKIYQFNGAN 181
Query: 184 SNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVAT 243
SNIQERAKALEV+Q+LK+KYH+G C+VAIVDDGKLDTESDSG FWVLFGGFAPIG+KVA
Sbjct: 182 SNIQERAKALEVVQYLKDKYHEGTCDVAIVDDGKLDTESDSGAFWVLFGGFAPIGRKVAN 241
Query: 244 EDDVIAETTPPKLYSIEDSQVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEER 303
+DD++ E+TPPKLY I D +++ ++G+LSKSMLEN KCYLLD G+E+++WVGRVTQV+ER
Sbjct: 242 DDDIVPESTPPKLYCITDGKMEPIDGDLSKSMLENTKCYLLDCGAEIYIWVGRVTQVDER 301
Query: 304 KAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGRGKVAAL 363
KAASQ+AEEF++S+NRPK+ +TRVIQGYE+++FKSNFDSWPSGS PG EEGRGKVAAL
Sbjct: 302 KAASQSAEEFLASENRPKATHVTRVIQGYESHSFKSNFDSWPSGSATPGNEEGRGKVAAL 361
Query: 364 LKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIV 423
LKQQGVG+KG+ KS P NE++PPLLE GGK+EVW +NG KT LPKEDIGK YSGDCY+V
Sbjct: 362 LKQQGVGLKGIAKSAPVNEDIPPLLESGGKLEVWYVNGKVKTPLPKEDIGKLYSGDCYLV 421
Query: 424 LYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQF 483
LYTYHSG+RK++YFL CWFGK SI EDQ A RLANTM NSLKGRPVQGRI++G+EPPQF
Sbjct: 422 LYTYHSGERKDEYFLSCWFGKKSIPEDQDTAIRLANTMSNSLKGRPVQGRIYEGKEPPQF 481
Query: 484 VALFQPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVAT 543
VALFQPMVV+KGGL SGYK S+ + TDETYT +SIAL+++SGT +HNNK QV+ VAT
Sbjct: 482 VALFQPMVVLKGGLSSGYKSSMGESESTDETYTPESIALVQVSGTGVHNNKAVQVETVAT 541
Query: 544 SLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFP 603
SLNS ECFLLQSG++MF WHGNQST EQ +LA KVAEFLKPG+ +KHAKEGTESS FWF
Sbjct: 542 SLNSYECFLLQSGTSMFLWHGNQSTHEQLELATKVAEFLKPGITLKHAKEGTESSTFWFA 601
Query: 604 LGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVF 663
LGGKQ++TSKK S E +RDPHLF+F+FN+GKF+VEE+YNF+Q HAEVF
Sbjct: 602 LGGKQNFTSKKASSETIRDPHLFSFAFNRGKFQVEEIYNFAQDDLLTEDIYFLDTHAEVF 661
Query: 664 VWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPCFCTTFFSWDPTK 723
VWVGQ V+ KEKQ+ FE GQ YID+A SLEGL PKVP+YK+ EGNEPCF TT+FSWD TK
Sbjct: 662 VWVGQCVEPKEKQTVFEIGQKYIDLAGSLEGLHPKVPIYKINEGNEPCFFTTYFSWDATK 721
Query: 724 ATVQGNSFQKKVALLFGASHAAEDKSHANQGGPTQRXXXXXXXXXXFNPSSERSTSPSHD 783
A VQGNSFQKK +LLFG H EDKS+ G QR FN SS R S D
Sbjct: 722 AIVQGNSFQKKASLLFGTHHVVEDKSNGGNQGLRQRAEALAALNSAFNSSSNRPAYSSQD 781
Query: 784 RSNGSNQGGPTQRXXXXXXXXXXX-XXXPGTKASAP-KTXXXXXXXXXXXXXXXXXXXXX 841
R N S+ G P QR TK+ P +
Sbjct: 782 RLNESHDG-PRQRAEALAALSSAFNSSSSSTKSPPPPRPVGTSQASQRAAAVAALSQVLV 840
Query: 842 XEKKRSPDTSPTR--TSGSPTAETSLSSEPKXXXXXXXXXXXXQVGDVKETEEVVPVSES 899
E K+SPDTSPTR TS +P + L+ E K + KE EEV P +
Sbjct: 841 AENKKSPDTSPTRRSTSSNPADDIPLT-EAKDEEEASEVAGL----EAKEEEEVSPAA-- 893
Query: 900 NGDDSETKQVTE-QDENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLSDEEFQTVF 958
D++E KQ TE Q ++ + S +TF+Y+QL+A+S+NPVTGIDFKRREAYLS+EEFQ+VF
Sbjct: 894 --DETEAKQETEEQGDSEIQPSGATFTYEQLRAKSENPVTGIDFKRREAYLSEEEFQSVF 951
Query: 959 GMMKEAFYKLPKWKQDMQKKKFDLF 983
G+ KEAF LP+WKQD+ KKKFDLF
Sbjct: 952 GIEKEAFNNLPRWKQDLLKKKFDLF 976
|
|
| TAIR|locus:2082523 VLN3 "villin 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2165570 VLN5 "villin 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| RGD|1307048 Vil1 "villin 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SRY3 VIL1 "Villin-1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P02640 VIL1 "Villin-1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29261 VIL1 "Villin-1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1ND31 VIL1 "Villin-1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:98930 Vil1 "villin 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RPX1 VIL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O81644 | VILI2_ARATH | No assigned EC number | 0.7271 | 0.9857 | 0.9928 | yes | no |
| O81645 | VILI3_ARATH | No assigned EC number | 0.7395 | 0.9816 | 1.0 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 983 | |||
| cd11290 | 113 | cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-l | 1e-64 | |
| cd11293 | 101 | cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-l | 1e-41 | |
| cd11291 | 99 | cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l | 4e-38 | |
| cd11289 | 92 | cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l | 2e-32 | |
| cd11293 | 101 | cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-l | 5e-29 | |
| cd11288 | 92 | cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l | 2e-28 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 4e-28 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 1e-24 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 7e-21 | |
| cd11290 | 113 | cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-l | 1e-20 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 4e-17 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 2e-15 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 8e-15 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 8e-15 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 9e-14 | |
| smart00153 | 36 | smart00153, VHP, Villin headpiece domain | 5e-13 | |
| pfam02209 | 36 | pfam02209, VHP, Villin headpiece domain | 5e-13 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 6e-13 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 9e-13 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 2e-11 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 3e-11 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 9e-11 | |
| cd11291 | 99 | cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l | 1e-10 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 2e-09 | |
| cd11288 | 92 | cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l | 3e-09 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 2e-07 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 5e-07 | |
| cd11291 | 99 | cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l | 1e-06 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 1e-06 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 4e-06 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 4e-06 | |
| cd11289 | 92 | cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l | 1e-05 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 6e-05 | |
| PRK13108 | 460 | PRK13108, PRK13108, prolipoprotein diacylglyceryl | 7e-05 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 1e-04 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 2e-04 | |
| cd11289 | 92 | cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l | 5e-04 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 7e-04 | |
| cd11288 | 92 | cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l | 0.001 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.001 |
| >gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 1e-64
Identities = 75/113 (66%), Positives = 91/113 (80%)
Query: 12 FQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGK 71
F+G GQ+ G +IWRIENF+ VP+P+S +GKFY GD YIVL+TT G+ YDIH+W+GK
Sbjct: 1 FEGVGQKPGLQIWRIENFELVPVPESFYGKFYEGDSYIVLKTTLDPSGSLSYDIHYWLGK 60
Query: 72 DTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGG 124
+ SQDEAG AAIK VELD LGGR VQHRE+QGHES++FLSYFK II +EGG
Sbjct: 61 EASQDEAGAAAIKAVELDDYLGGRPVQHREVQGHESEEFLSYFKKGIIYIEGG 113
|
Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin_like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 113 |
| >gnl|CDD|200449 cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200449 cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|128458 smart00153, VHP, Villin headpiece domain | Back alignment and domain information |
|---|
| >gnl|CDD|202157 pfam02209, VHP, Villin headpiece domain | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 983 | |||
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0445 | 919 | consensus Actin regulatory protein supervillin (ge | 100.0 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0445 | 919 | consensus Actin regulatory protein supervillin (ge | 100.0 | |
| PF02209 | 36 | VHP: Villin headpiece domain; InterPro: IPR003128 | 99.67 | |
| smart00153 | 36 | VHP Villin headpiece domain. | 99.66 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 99.65 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 99.64 | |
| KOG1044 | 670 | consensus Actin-binding LIM Zn-finger protein Lima | 99.49 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 99.32 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 99.29 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 96.3 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 95.88 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 95.0 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 93.72 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 92.7 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 92.54 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 92.04 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 80.88 |
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-221 Score=1892.40 Aligned_cols=817 Identities=52% Similarity=0.908 Sum_probs=755.5
Q ss_pred CCCccccCChhhhcCCccccEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecCCCCCceEEEEEEecCCCChhhhhh
Q 002001 1 MSTSAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGT 80 (983)
Q Consensus 1 ~~~~~~~~d~~f~~~g~~~gl~IWrIe~~~~v~vp~~~~G~Fy~gD~YIVL~t~~~~~~~~~~~Ih~W~G~~ss~de~g~ 80 (983)
|+.+|.++|++|+++|+++||+|||||||+++|||++.||+||+|||||||+|+.++++.+.|+||||||+++|+||+|+
T Consensus 1 ~s~~~~~ld~af~~ag~~pGl~IWRIe~f~lv~VP~s~~G~Fy~GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~ 80 (827)
T KOG0443|consen 1 MSMSMLDLDPAFQGAGQKPGLEIWRIENFELVPVPKSSHGKFYTGDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGA 80 (827)
T ss_pred CCccccccCHHHHhcccCCceEEEEeccCeeeecchhccCceecCceEEEEehhhccCCccceeEEEEecCccchhhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcceEEEeeccCCCHHHHhhcCCcEEEecCcccCCCccccccccccEEEEEecceeEEEEEecCCcC
Q 002001 81 AAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFRKTEEEEFETRLYVCKGKRVVRMKQVPFARS 160 (983)
Q Consensus 81 AA~~aveLd~~Lgg~~vq~Re~QG~Es~~FLs~Fk~~ii~~~Gg~~sgf~~~e~~~~~~rLy~vkGk~~v~~~eV~~s~s 160 (983)
||++|+|||++|||++|||||||||||+.||+|||+||||++||++|||+||+.+.+.+|||||||+|+||++|||++|+
T Consensus 81 aAiktveLD~~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~GGv~Sg~khv~~~~~~~rL~~~KGkr~vr~~eV~~~~s 160 (827)
T KOG0443|consen 81 AAIKTVELDDYLGGRAVQHREVQGHESEKFLSYFKPGIIYQEGGVASGFKHVETEEYQVRLFHCKGKRNVRVKEVPFSWS 160 (827)
T ss_pred eeeeeEehhhhhCCCcceeehhcccchHHHHhhccCCceecccccccCcccccccceeeEEEEEccceeEEEEEEEeehh
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred CcCCCCceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHHHHhCCCCC-CCC
Q 002001 161 SLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAP-IGK 239 (983)
Q Consensus 161 SLNs~DvFILd~~~~Iy~W~G~~Sn~~Er~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~-~~~ 239 (983)
|||++||||||++++||||+|++||++||+||+++|+.|+|.+|.|+|+|.+||+|+++.+++.++||..+||.++ ++.
T Consensus 161 S~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~ 240 (827)
T KOG0443|consen 161 SLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVLGFAPALPK 240 (827)
T ss_pred hcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhcCcCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 666
Q ss_pred CCCCcccccccCCCCeEEEEe--CCceeEEEc--c-ccccccCCCcEEEeeCC-CeEEEEEcCCCCHHHHHHHHHHHHHH
Q 002001 240 KVATEDDVIAETTPPKLYSIE--DSQVKIVEG--E-LSKSMLENNKCYLLDRG-SEVFVWVGRVTQVEERKAASQAAEEF 313 (983)
Q Consensus 240 ~~~~~d~~~~~~~~~rLy~v~--~G~l~~~e~--~-l~q~~L~~d~vyILD~g-~eIyVWiGk~as~~eRk~A~~~A~~y 313 (983)
.....++.......++||+|+ .|.+.+..+ . |+|++|++++||||||| .+||||+|++++.+||++||..|++|
T Consensus 241 ~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~AeeF 320 (827)
T KOG0443|consen 241 KSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEEF 320 (827)
T ss_pred CCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 655555555667889999999 466665443 2 99999999999999998 99999999999999999999999999
Q ss_pred HHhcCCCCCceEEEecCCCCChhhhhcccCCccCCCCCCCcccchhhHhhhhhccccccccCCCCCCCCCCCCcccCCcc
Q 002001 314 ISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGK 393 (983)
Q Consensus 314 i~~~~rp~~t~v~~V~eG~Ep~~FK~~F~~W~~~~~~~~~~~~rgkva~~~~~~~~dv~~l~~~~p~~~e~~~~~d~sG~ 393 (983)
|++++||.||+|++|.||+|++.||++|.+|++...+.+.+.+||++|++++++++||..|.+..+++++.+|+|||+|+
T Consensus 321 lk~k~yP~~TqV~rv~EG~Esa~FKq~F~~W~~~~~t~~~~~~rG~va~l~q~~~~Dv~~L~~~~~~aa~~~mvddg~G~ 400 (827)
T KOG0443|consen 321 LKKKKYPPNTQVVRVLEGAESAPFKQLFDSWPDKDQTNGKEEGRGKVAALLQVKGFDVTGLHKSPKMAAQPQMVDDGSGK 400 (827)
T ss_pred HHhccCCCCceEEEecCCCcchhHHHHHhhCccccccccccccccccceeeeecccchhhcccCccccccccceecCCCc
Confidence 99999999999999999999999999999999998887888999999999988999999997777789999999999999
Q ss_pred EEEEEEeCCccccCCCCccceeeeCcEEEEEEeeecCCCCcceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEE
Q 002001 394 MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGR 473 (983)
Q Consensus 394 l~VWRIe~~~~~~v~~~~~G~FysgDcYIVlytY~~~~~~~~~~iy~W~G~~ss~de~~~aa~~a~eld~~l~g~~vq~R 473 (983)
++||||++.++++||..++|+||+||||||+|||..++++.+|+||.|+|++|+++|+++|+.+|++|+++++|.|+|+|
T Consensus 401 ~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~r 480 (827)
T KOG0443|consen 401 LQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVR 480 (827)
T ss_pred EEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEE
Confidence 99999999999999999999999999999999995356689999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhhcCC-eEEEeCccccCCccccccCCCCCccccCCceeEEEEEecCCCceEEEEeccCcCCCCCCCeEE
Q 002001 474 IFQGREPPQFVALFQP-MVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFL 552 (983)
Q Consensus 474 v~QGkEp~~Fl~iF~~-~iI~~Gg~~s~~~~~~~e~~~~~~~y~~~~~~Lf~V~G~~~~~~~aveV~~~assLnS~d~FI 552 (983)
|+|||||+|||+||++ |||++||++. .+++|+.++++||||+|++++|++|+||++.++||||+||||
T Consensus 481 v~~GkEP~hF~~iFqgkliifkgg~s~-----------~g~~~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fv 549 (827)
T KOG0443|consen 481 IYEGKEPPHFLAIFQGKLIIFKGGTSE-----------EGNTYPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFV 549 (827)
T ss_pred eecCCCChHHHHhhCCceEEEecCcCC-----------CCCccCCCceEEEEEeccCcccceeEeeccccccccccceEE
Confidence 9999999999999998 9999999973 245677888999999999999999999999999999999999
Q ss_pred eeeCCeEEEEECCCCCHHHHHHHHHHHHHhCCCceEEeeecCCCccccccccCCCcCCCCCCC-CCCCCCCCcEEEEEec
Q 002001 553 LQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKV-SPEIVRDPHLFTFSFN 631 (983)
Q Consensus 553 L~~~~~iyvW~G~~ss~~er~~A~~va~~l~~~~~~~~v~EG~E~~~FW~~LGgk~~y~~~~~-~~~~~~~prLF~~S~~ 631 (983)
|++++++|+|||++|+++||+||++++..|+ ..+...+.||+||++||++|||+.+|+++++ .....++||||.||+.
T Consensus 550 L~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-~~~~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~ 628 (827)
T KOG0443|consen 550 LKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-RCQSTAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNK 628 (827)
T ss_pred EecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-cCChhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEec
Confidence 9999999999999999999999999999997 3577889999999999999999999999984 4456799999999999
Q ss_pred CCceeEeeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHHHHHHHhhhcccCCCCCCCcEEEecCCCCCc
Q 002001 632 KGKFEVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPC 711 (983)
Q Consensus 632 ~G~~~v~EI~~FsQdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~r~~~~pI~~V~eG~EP~ 711 (983)
+|+|+++||++|+||||+++||||||||++||||||++++++||..|+.+|++||+++ ..+||++.|||++|+||+||+
T Consensus 629 ~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~-~p~gr~~~TPI~vV~qG~EPp 707 (827)
T KOG0443|consen 629 TGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETD-LPEGRDPRTPIYVVKQGHEPP 707 (827)
T ss_pred CCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhcc-CcccCCCCCceEEecCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 445999999999999999999
Q ss_pred cccccee-cCCCcccccCchHHHHHHHHhcCCCccccccccCCCCCccchhhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002001 712 FCTTFFS-WDPTKATVQGNSFQKKVALLFGASHAAEDKSHANQGGPTQRASALAALSSAFNPSSERSTSPSHDRSNGSNQ 790 (983)
Q Consensus 712 ~Ft~~F~-Wd~~k~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (983)
+||+||. ||+.| +||++++++|++..
T Consensus 708 ~Ftg~F~~WD~~k-----wS~~~~~~~l~~~~------------------------------------------------ 734 (827)
T KOG0443|consen 708 FFTGFFLSWDPSK-----WSFQKKLKDLKNKV------------------------------------------------ 734 (827)
T ss_pred hhhccccccCCcc-----cccchHHHHHhccc------------------------------------------------
Confidence 9999999 99998 57899999998661
Q ss_pred CCCCCcchhHHHhhhcccCCCCCCCCCCCCCCCCCCchHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCccccCCCCcc
Q 002001 791 GGPTQRASALAALSSAFKSSPGTKASAPKTSGSGQGSQRAAAVAALSQVLSAEKKRSPDTSPTRTSGSPTAETSLSSEPK 870 (983)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (983)
.+++.+++++++.++|. +.+- +. +
T Consensus 735 ---~~~~~~~~~~~a~~~sk----~~~~---~~---------------------------~------------------- 758 (827)
T KOG0443|consen 735 ---TYNARAISEISADVRSK----LYPD---SL---------------------------N------------------- 758 (827)
T ss_pred ---ccchhhccchhhhhhcc----cccc---cC---------------------------C-------------------
Confidence 24444555666665552 1100 00 0
Q ss_pred ccccccccccccccCCcccccccccccCCCCCCCccccccccccCCCCCCCcccChHHHhhccCCCCCCCCccccccCCC
Q 002001 871 AEYAHSESEASEQVGDVKETEEVVPVSESNGDDSETKQVTEQDENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLS 950 (983)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~vd~~~~E~yLs 950 (983)
+ + .. ....+|||++|+.++.++.++|||+|||.|||
T Consensus 759 ------------------------~---------~-------~~----~p~~~~~~e~l~~~~~~~~~~id~~rrE~yLs 794 (827)
T KOG0443|consen 759 ------------------------P---------D-------SE----APRPAFPYEQLLTQSEDPVPDIDPTRREAYLS 794 (827)
T ss_pred ------------------------C---------C-------cc----CcccCCCHHHHhccccCcCCCCChhHhhhhcc
Confidence 0 0 00 11248999999966666555599999999999
Q ss_pred HHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002001 951 DEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 951 ~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
++||+.+||||++|||+||+|||++|||+++||
T Consensus 795 ~~dF~~~Fgmtk~eF~~LPkWKq~~lKk~~~LF 827 (827)
T KOG0443|consen 795 EEEFVSVFGMTKEEFYALPKWKQNKLKKQFGLF 827 (827)
T ss_pred HHHHHHHhCcCHHHHhhcchhHHHHHhhhhccC
Confidence 999999999999999999999999999999999
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia | Back alignment and domain information |
|---|
| >smart00153 VHP Villin headpiece domain | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 983 | ||||
| 1d0n_A | 729 | The Crystal Structure Of Calcium-Free Equine Plasma | 1e-100 | ||
| 2fgh_A | 731 | Atp Bound Gelsolin Length = 731 | 1e-100 | ||
| 3ffn_A | 782 | Crystal Structure Of Calcium-Free Human Gelsolin Le | 2e-99 | ||
| 3ffk_A | 377 | Crystal Structure Of Human Gelsolin Domains G1-G3 B | 8e-62 | ||
| 3ffk_A | 377 | Crystal Structure Of Human Gelsolin Domains G1-G3 B | 8e-18 | ||
| 1rgi_G | 346 | Crystal Structure Of Gelsolin Domains G1-G3 Bound T | 2e-61 | ||
| 1rgi_G | 346 | Crystal Structure Of Gelsolin Domains G1-G3 Bound T | 2e-15 | ||
| 1j72_A | 347 | Crystal Structure Of Mutant Macrophage Capping Prot | 1e-49 | ||
| 1j72_A | 347 | Crystal Structure Of Mutant Macrophage Capping Prot | 2e-17 | ||
| 1jhw_A | 347 | Ca2+-Binding Mimicry In The Crystal Structure Of Th | 4e-49 | ||
| 1jhw_A | 347 | Ca2+-Binding Mimicry In The Crystal Structure Of Th | 2e-17 | ||
| 3fg7_A | 398 | The Crystal Structure Of Villin Domain 6 Length = 3 | 1e-41 | ||
| 1nph_A | 329 | Gelsolin Domains 4-6 In Active, Actin Free Conforma | 9e-36 | ||
| 1p8x_A | 344 | The Calcium-activated C-terminal Half Of Gelsolin L | 1e-34 | ||
| 1h1v_G | 331 | Gelsolin G4-G6ACTIN COMPLEX Length = 331 | 2e-34 | ||
| 3fg6_A | 371 | Structure Of The C-terminus Of Adseverin Length = 3 | 2e-34 | ||
| 3tu5_B | 297 | Actin Complex With Gelsolin Segment 1 Fused To Cobl | 2e-32 | ||
| 3tu5_B | 297 | Actin Complex With Gelsolin Segment 1 Fused To Cobl | 1e-08 | ||
| 1t44_G | 147 | Structural Basis Of Actin Sequestration By Thymosin | 4e-32 | ||
| 1t44_G | 147 | Structural Basis Of Actin Sequestration By Thymosin | 1e-09 | ||
| 1p8z_G | 136 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 5e-32 | ||
| 1p8z_G | 136 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 3e-09 | ||
| 1d4x_G | 126 | Crystal Structure Of Caenorhabditis Elegans Mg-Atp | 5e-32 | ||
| 1d4x_G | 126 | Crystal Structure Of Caenorhabditis Elegans Mg-Atp | 4e-09 | ||
| 2ff3_A | 150 | Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Mo | 9e-32 | ||
| 2ff3_A | 150 | Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Mo | 6e-09 | ||
| 1yag_G | 125 | Structure Of The Yeast Actin-human Gelsolin Segment | 1e-31 | ||
| 1yag_G | 125 | Structure Of The Yeast Actin-human Gelsolin Segment | 1e-08 | ||
| 2vik_A | 126 | Refined Structure Of The Actin-Severing Domain Vill | 1e-31 | ||
| 2vik_A | 126 | Refined Structure Of The Actin-Severing Domain Vill | 4e-11 | ||
| 3ci5_G | 126 | Complex Of Phosphorylated Dictyostelium Discoideum | 1e-31 | ||
| 3ci5_G | 126 | Complex Of Phosphorylated Dictyostelium Discoideum | 1e-08 | ||
| 3cip_G | 128 | Complex Of Dictyostelium Discoideum Actin With Gels | 1e-31 | ||
| 3cip_G | 128 | Complex Of Dictyostelium Discoideum Actin With Gels | 1e-08 | ||
| 1c0f_S | 127 | Crystal Structure Of Dictyostelium Caatp-Actin In C | 2e-31 | ||
| 1c0f_S | 127 | Crystal Structure Of Dictyostelium Caatp-Actin In C | 5e-08 | ||
| 1eqy_S | 125 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 2e-31 | ||
| 1eqy_S | 125 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 6e-08 | ||
| 1svy_A | 114 | Severin Domain 2, 1.75 Angstrom Crystal Structure L | 1e-10 | ||
| 1svy_A | 114 | Severin Domain 2, 1.75 Angstrom Crystal Structure L | 2e-06 | ||
| 1svq_A | 114 | Structure Of Severin Domain 2 In Solution Length = | 2e-10 | ||
| 1svq_A | 114 | Structure Of Severin Domain 2 In Solution Length = | 2e-06 | ||
| 1kcq_A | 104 | Human Gelsolin Domain 2 With A Cd2+ Bound Length = | 2e-10 | ||
| 2rjv_A | 67 | Crystal Structure Of The H41y Mutant Of Villin Head | 2e-07 | ||
| 1yu5_X | 67 | Crystal Structure Of The Headpiece Domain Of Chicke | 5e-07 | ||
| 3myc_A | 67 | Crystal Structure Of Hp67 H41f - P212121 Length = 6 | 6e-07 | ||
| 1yu8_X | 67 | Crystal Structure Of The R37a Mutant Of Villin Head | 3e-06 | ||
| 1yu7_X | 67 | Crystal Structure Of The W64y Mutant Of Villin Head | 5e-06 | ||
| 2llf_A | 107 | Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 | 5e-06 | ||
| 2llf_A | 107 | Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 | 2e-05 | ||
| 3nkj_A | 67 | Crystal Structure Of Hp67 L61g Length = 67 | 5e-06 | ||
| 3mye_X | 68 | Crystal Structure Of Hp67 L61gl Length = 68 | 1e-05 | ||
| 1zv6_A | 68 | Nmr Structure Of The Human Dematin Headpiece S74e M | 3e-04 | ||
| 2l3x_A | 67 | Villin Head Piece Domain Of Human Ablim2 Length = 6 | 4e-04 | ||
| 1qzp_A | 68 | Nmr Structure Of The Human Dematin Headpiece Domain | 5e-04 | ||
| 2ppz_A | 36 | Nmr Solution Structure Of The Villin Headpiece Muta | 8e-04 |
| >pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma Gelsolin. Length = 729 | Back alignment and structure |
|
| >pdb|2FGH|A Chain A, Atp Bound Gelsolin Length = 731 | Back alignment and structure |
| >pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin Length = 782 | Back alignment and structure |
| >pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To Actin Length = 377 | Back alignment and structure |
| >pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To Actin Length = 377 | Back alignment and structure |
| >pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin Length = 346 | Back alignment and structure |
| >pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin Length = 346 | Back alignment and structure |
| >pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein (Cap G) With Actin-Severing Activity In The Ca2+-Free Form Length = 347 | Back alignment and structure |
| >pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein (Cap G) With Actin-Severing Activity In The Ca2+-Free Form Length = 347 | Back alignment and structure |
| >pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G Length = 347 | Back alignment and structure |
| >pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G Length = 347 | Back alignment and structure |
| >pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6 Length = 398 | Back alignment and structure |
| >pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation Identifies Sites Of Regulatory Calcium Ions Length = 329 | Back alignment and structure |
| >pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin Length = 344 | Back alignment and structure |
| >pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX Length = 331 | Back alignment and structure |
| >pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin Length = 371 | Back alignment and structure |
| >pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl Segment Length = 297 | Back alignment and structure |
| >pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl Segment Length = 297 | Back alignment and structure |
| >pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 147 | Back alignment and structure |
| >pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 147 | Back alignment and structure |
| >pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Residues Val26-Glu156 Length = 136 | Back alignment and structure |
| >pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Residues Val26-Glu156 Length = 136 | Back alignment and structure |
| >pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 126 | Back alignment and structure |
| >pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 126 | Back alignment and structure |
| >pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif Hybrid In Complex With Actin Length = 150 | Back alignment and structure |
| >pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif Hybrid In Complex With Actin Length = 150 | Back alignment and structure |
| >pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 125 | Back alignment and structure |
| >pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 125 | Back alignment and structure |
| >pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t, Determined By Solution Nmr, Minimized Average Structure Length = 126 | Back alignment and structure |
| >pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t, Determined By Solution Nmr, Minimized Average Structure Length = 126 | Back alignment and structure |
| >pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 126 | Back alignment and structure |
| >pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 126 | Back alignment and structure |
| >pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin Length = 128 | Back alignment and structure |
| >pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin Length = 128 | Back alignment and structure |
| >pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 127 | Back alignment and structure |
| >pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 127 | Back alignment and structure |
| >pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 125 | Back alignment and structure |
| >pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 125 | Back alignment and structure |
| >pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure Length = 114 | Back alignment and structure |
| >pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure Length = 114 | Back alignment and structure |
| >pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution Length = 114 | Back alignment and structure |
| >pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution Length = 114 | Back alignment and structure |
| >pdb|1KCQ|A Chain A, Human Gelsolin Domain 2 With A Cd2+ Bound Length = 104 | Back alignment and structure |
| >pdb|2RJV|A Chain A, Crystal Structure Of The H41y Mutant Of Villin Headpiece, P 21 21 21 Space Group Length = 67 | Back alignment and structure |
| >pdb|1YU5|X Chain X, Crystal Structure Of The Headpiece Domain Of Chicken Villin Length = 67 | Back alignment and structure |
| >pdb|3MYC|A Chain A, Crystal Structure Of Hp67 H41f - P212121 Length = 67 | Back alignment and structure |
| >pdb|1YU8|X Chain X, Crystal Structure Of The R37a Mutant Of Villin Headpiece Length = 67 | Back alignment and structure |
| >pdb|1YU7|X Chain X, Crystal Structure Of The W64y Mutant Of Villin Headpiece Length = 67 | Back alignment and structure |
| >pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 Length = 107 | Back alignment and structure |
| >pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 Length = 107 | Back alignment and structure |
| >pdb|3NKJ|A Chain A, Crystal Structure Of Hp67 L61g Length = 67 | Back alignment and structure |
| >pdb|3MYE|X Chain X, Crystal Structure Of Hp67 L61gl Length = 68 | Back alignment and structure |
| >pdb|1ZV6|A Chain A, Nmr Structure Of The Human Dematin Headpiece S74e Mutant Length = 68 | Back alignment and structure |
| >pdb|2L3X|A Chain A, Villin Head Piece Domain Of Human Ablim2 Length = 67 | Back alignment and structure |
| >pdb|1QZP|A Chain A, Nmr Structure Of The Human Dematin Headpiece Domain Length = 68 | Back alignment and structure |
| >pdb|2PPZ|A Chain A, Nmr Solution Structure Of The Villin Headpiece Mutant G34l Length = 36 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729 | Back alignment and structure |
|---|
Score = 630 bits (1625), Expect = 0.0
Identities = 241/748 (32%), Positives = 378/748 (50%), Gaps = 41/748 (5%)
Query: 9 DPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFW 68
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W
Sbjct: 3 HPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYW 62
Query: 69 IGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASG 128
+G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASG
Sbjct: 63 LGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASG 122
Query: 129 FRKTEEEEFET-RLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQ 187
F+ E RL KG+RVVR +VP + S N+ D FILD + IYQ+ G+ SN
Sbjct: 123 FKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRF 182
Query: 188 ERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKK-VATEDD 246
ER KA +V + +++ G V++ ++G + + G + + T +
Sbjct: 183 ERLKATQVSKGIRDNERSGRAQVSVFEEGA-----EPEAMLQVLGPKPTLPEATEDTVKE 237
Query: 247 VIAETTPPKLYSIEDSQVKIV------EGELSKSMLENNKCYLLDRGSE--VFVWVGRVT 298
A KLY + + +V E ++ L + C++LD G + +FVW G+
Sbjct: 238 DAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQA 297
Query: 299 QVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGA-EEGR 357
+EERKAA + A +FIS + PK +++ + +G ET F+ F +W G
Sbjct: 298 NMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYL 357
Query: 358 GKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYS 417
A +++ + ST + +G G+ ++WR+ GS K + G+FY
Sbjct: 358 SSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQFYG 417
Query: 418 GDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQG 477
GD YI+LY Y G R+ + W G S +++ + L + L G PVQ R+ QG
Sbjct: 418 GDSYIILYNYRHGSRQG-QIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQG 476
Query: 478 REPPQFVALF--QPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKT 535
+EP ++LF +PM+V KGG + S L ++ +S +
Sbjct: 477 KEPAHLMSLFGGKPMIVYKGGTSREGGQ-----------TAPASTRLFQVRASSSGATRA 525
Query: 536 EQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGT 595
++ A +LNS++ F+L++ S + W G ++ ++ A ++ L+ EG+
Sbjct: 526 VEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRA--QPVQVAEGS 583
Query: 596 ESSAFWFPLGGKQSYTSKKVSPEIVRDPH---LFTFSFNKGKFEVEEVY-NFSQDDLLTE 651
E +FW LGGK +Y + + D H LF S G+F +EEV F Q+DL T+
Sbjct: 584 EPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATD 643
Query: 652 DILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPC 711
D+++LDT +VFVWVG+ +EK A + YID + + P+ V +G EP
Sbjct: 644 DVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPA--HRDRRTPITVVKQGFEPP 701
Query: 712 FCTTFF-SWDPTKATVQGNSFQKKVALL 738
+F WD + +V + + +A L
Sbjct: 702 SFVGWFLGWDDSYWSV--DPLDRALAEL 727
|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347 | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347 | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398 | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398 | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344 | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344 | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* Length = 128 | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* Length = 128 | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Length = 150 | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Length = 150 | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Length = 147 | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Length = 147 | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A Length = 126 | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A Length = 126 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A Length = 67 | Back alignment and structure |
|---|
| >1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A Length = 68 | Back alignment and structure |
|---|
| >1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A Length = 67 | Back alignment and structure |
|---|
| >1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A Length = 88 | Back alignment and structure |
|---|
| >1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1 Length = 37 | Back alignment and structure |
|---|
| >1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B* Length = 35 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 983 | |||
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 100.0 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 100.0 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 100.0 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 100.0 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 100.0 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 100.0 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 100.0 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 100.0 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 100.0 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 100.0 | |
| 3tu5_B | 297 | Gelsolin, protein cordon-BLeu, thymosin beta-4; un | 100.0 | |
| 2ff3_A | 150 | Gelsolin; protein-protein complex, structural prot | 100.0 | |
| 3cip_G | 128 | Gelsolin; actin, dictyostelium discoideum, actin-a | 100.0 | |
| 1t44_G | 147 | Chimera of gelsolin domain 1 and C-terminal domain | 100.0 | |
| 3tu5_B | 297 | Gelsolin, protein cordon-BLeu, thymosin beta-4; un | 100.0 | |
| 2vik_A | 126 | Villin 14T; actin-binding protein, capping protein | 100.0 | |
| 2vik_A | 126 | Villin 14T; actin-binding protein, capping protein | 100.0 | |
| 3cip_G | 128 | Gelsolin; actin, dictyostelium discoideum, actin-a | 100.0 | |
| 1t44_G | 147 | Chimera of gelsolin domain 1 and C-terminal domain | 100.0 | |
| 2ff3_A | 150 | Gelsolin; protein-protein complex, structural prot | 100.0 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 99.93 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 99.91 | |
| 1yu8_X | 67 | Villin; alpha helix, 3-10 helix, structural protei | 99.91 | |
| 1qzp_A | 68 | Dematin; villin headpiece, actin binding domain, p | 99.91 | |
| 2k6m_S | 67 | Supervillin; SVHP, HP, headpiece, archvillin, acti | 99.9 | |
| 1ujs_A | 88 | Actin-binding LIM protein homologue; VHP domain, s | 99.89 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 99.86 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 99.86 | |
| 1und_A | 37 | Advillin, P92; actin binding, F-actin binding, cyt | 99.69 | |
| 1wy3_A | 35 | Villin; structural protein; HET: NLE; 0.95A {Synth | 99.64 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 94.7 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 94.4 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 94.25 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 93.79 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 93.71 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 93.03 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 92.44 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 89.33 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 89.25 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 88.74 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 88.56 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 88.39 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 86.2 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 85.2 |
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-168 Score=1531.91 Aligned_cols=708 Identities=33% Similarity=0.598 Sum_probs=645.0
Q ss_pred cCChhhhcCCccccEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecCCCCCceEEEEEEecCCCChhhhhhHHHHHH
Q 002001 7 SLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTV 86 (983)
Q Consensus 7 ~~d~~f~~~g~~~gl~IWrIe~~~~v~vp~~~~G~Fy~gD~YIVL~t~~~~~~~~~~~Ih~W~G~~ss~de~g~AA~~av 86 (983)
++||+|+++|+++|++|||||||+++|||++.||+||+||||||||||..+++.+.|+||||+|++||+||+|+||++|+
T Consensus 1 ~~~~~f~~~g~~~g~~iWrIe~~~~~~v~~~~~G~Fy~gdsYivL~t~~~~~~~~~~~i~~W~G~~ss~de~g~aA~~tv 80 (729)
T 1d0n_A 1 VEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTV 80 (729)
T ss_dssp CCCTTGGGTTSSSEEEEEEECSSSEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CcchhhhhcccCCCeEEEEEcCCEEEeCChHhcCcccCCCEEEEEEeccCCCCccceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999987788899999999999999999999999999
Q ss_pred HHHHHhCCcceEEEeeccCCCHHHHhhcCCcEEEecCcccCCCccccccc-cccEEEEEecceeEEEEEecCCcCCcCCC
Q 002001 87 ELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFRKTEEEE-FETRLYVCKGKRVVRMKQVPFARSSLNHD 165 (983)
Q Consensus 87 eLd~~Lgg~~vq~Re~QG~Es~~FLs~Fk~~ii~~~Gg~~sgf~~~e~~~-~~~rLy~vkGk~~v~~~eV~~s~sSLNs~ 165 (983)
|||++|||.||||||+|||||++||+||+++|+|++||++|||+|++.+. ..+|||||||+++++++|||++++|||++
T Consensus 81 eLd~~lgg~~vq~Re~Qg~Es~~Fl~~Fk~~i~~~~Gg~~sgf~~v~~~~~~~~rL~~vkG~~~v~~~eV~~s~~SLns~ 160 (729)
T 1d0n_A 81 QLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNG 160 (729)
T ss_dssp HHHHHTTSCCEEEEEETTCCCHHHHHTCSSCEEEESCCTTTTCCCCCCSSCCCCEEEEEECSSSCEEEEECSSGGGCCSS
T ss_pred HHHHHcCCcceEEEEecCCCCHHHHHhccCCcEEeeCCcccCcccccccCCCCcEEEEEECCCcEEEEEEeccHHHcCCC
Confidence 99999999999999999999999999999999999999999999998766 48999999999999999999999999999
Q ss_pred CceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHHHHhCCCCCCCCCCCCcc
Q 002001 166 DVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATED 245 (983)
Q Consensus 166 DvFILd~~~~Iy~W~G~~Sn~~Er~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~~~~~~~~~d 245 (983)
||||||++++||+|+|++||..||.||+++|+.|++.+|+|+|+|++|+||. |+.+||++|||..+++.....+.
T Consensus 161 DvFILd~g~~iy~W~G~~s~~~Er~kA~~~a~~i~~~er~g~~~i~~v~Eg~-----e~~eFw~~LGg~~~~~~~~~~~~ 235 (729)
T 1d0n_A 161 DCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGA-----EPEAMLQVLGPKPTLPEATEDTV 235 (729)
T ss_dssp SEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHSGGGCSEEEEEETTC-----CCHHHHHHHCSCCCCCCCCGGGS
T ss_pred CeEEEEcCCEEEEEECCCCCHHHHHHHHHHHHHHhhhhcCCCccEEEecCCC-----ChHHHHHHcCCCcccCCCCcchh
Confidence 9999999999999999999999999999999999988888999999999995 67899999999877754322110
Q ss_pred c-ccccCCCCeEEEEe--CCceeEEEc----cccccccCCCcEEEeeCC-Ce-EEEEEcCCCCHHHHHHHHHHHHHHHHh
Q 002001 246 D-VIAETTPPKLYSIE--DSQVKIVEG----ELSKSMLENNKCYLLDRG-SE-VFVWVGRVTQVEERKAASQAAEEFISS 316 (983)
Q Consensus 246 ~-~~~~~~~~rLy~v~--~G~l~~~e~----~l~q~~L~~d~vyILD~g-~e-IyVWiGk~as~~eRk~A~~~A~~yi~~ 316 (983)
. .......+|||+|+ +|++++.++ .|+|+||++++||||||| .+ ||||+|++++..+|+.||.+|++|++.
T Consensus 236 ~~~~~~~~~~rLy~vs~~~G~l~~~ev~~~~~~~q~~L~~~dv~ILD~g~~~~ifVW~Gk~a~~~er~~A~~~A~~y~~~ 315 (729)
T 1d0n_A 236 KEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISK 315 (729)
T ss_dssp CCCCCCCCCCEEEEEECSSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHHHTTHHHHHHHHHHH
T ss_pred hhhhccccCcEEEEEECCCCCEEEEEeccCCCCCHHHcCCCCEEEEecCCccEEEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 0 12235678999998 789988876 399999999999999999 44 999999999999999999999999999
Q ss_pred cCCCCCceEEEecCCCCChhhhhcccCCccCCCCC--CCcccchhhHhhhhhccccccccCCCCCCCCCCCCcccCCccE
Q 002001 317 QNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAP--GAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKM 394 (983)
Q Consensus 317 ~~rp~~t~v~~V~eG~Ep~~FK~~F~~W~~~~~~~--~~~~~rgkva~~~~~~~~dv~~l~~~~p~~~e~~~~~d~sG~l 394 (983)
.+||.||+|++|.||.||.+||++|.+|++...+. ......+++| .++++++|+..|+...+++++.+++||++|++
T Consensus 316 ~~~p~~t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~~~~~~~~~~~~~a-~~~~~~~d~~~l~~~p~~~~~~~~~d~g~g~l 394 (729)
T 1d0n_A 316 MDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYLSSHIA-HVERVPFDAATLHTSTAMAAQHGMDDDGTGQK 394 (729)
T ss_dssp TTCCTTCEEEEEETTCCCHHHHTTBTTCCCTTCSSSSSCSCCCGGGT-TCCCCCCCTTTGGGCHHHHHHHTCSSCSCSCE
T ss_pred ccCCCCCeEEEEeCCCCCHHHHHHHhcCCCccccccccccccccccc-cccccccChHHhccCcccccccccccCCCCcE
Confidence 99999999999999999999999999999865432 1222223454 35688999999854433566778999999999
Q ss_pred EEEEEeCCccccCCCCccceeeeCcEEEEEEeeecCCCCcceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEe
Q 002001 395 EVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRI 474 (983)
Q Consensus 395 ~VWRIe~~~~~~v~~~~~G~FysgDcYIVlytY~~~~~~~~~~iy~W~G~~ss~de~~~aa~~a~eld~~l~g~~vq~Rv 474 (983)
+||||+++.+++||++.||+||+|||||||||| ..+++.+|+||||||++|+++|+++||++|++||+.|+|.|+|+||
T Consensus 395 ~vWrIe~~~~~~vp~~~~G~Fy~gd~Yivl~ty-~~~g~~~~~iyfW~G~~ss~de~g~aa~~~veLd~~lgg~~vq~R~ 473 (729)
T 1d0n_A 395 QIWRVEGSNKVPVDPATYGQFYGGDSYIILYNY-RHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRV 473 (729)
T ss_dssp EEEEEETTEEEECCGGGTTEEETTSEEEEEEEE-EETTEEEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTSCSEEEEE
T ss_pred EEEEEeCCEEEECChhhccEEcCCcEEEEEEEE-ecCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCceEEec
Confidence 999999999999999999999999999999999 5788999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhcC-C-eEEEeCccccCCccccccCCCCCccccCCceeEEEEEecCCCceEEEEeccCcCCCCCCCeEE
Q 002001 475 FQGREPPQFVALFQ-P-MVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFL 552 (983)
Q Consensus 475 ~QGkEp~~Fl~iF~-~-~iI~~Gg~~s~~~~~~~e~~~~~~~y~~~~~~Lf~V~G~~~~~~~aveV~~~assLnS~d~FI 552 (983)
+||+||+|||+||+ + |+|++||+++. + ..+....+|||||+|+.+.+++++||++.++||||+||||
T Consensus 474 ~Qg~E~~~Fl~~F~g~~~ii~~Gg~~~~--~---------~~~~~~~~rLf~vrg~~~~~~~~~eV~~~~ssLns~d~fI 542 (729)
T 1d0n_A 474 VQGKEPAHLMSLFGGKPMIVYKGGTSRE--G---------GQTAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFV 542 (729)
T ss_dssp ETTCCCHHHHTTSTTSCEEEESSCCCSS--C---------CCCCCCSSEEEEEEECTTSCEEEEEECCCGGGCCSSSEEE
T ss_pred ccCCCCHHHHHhcCCCeEEEEeCCcccc--C---------ccCCCCCCEEEEEECCCCCceEEEEecCChhhcCcCCeEE
Confidence 99999999999998 5 89999998752 1 1123346899999999888999999999999999999999
Q ss_pred eeeCCeEEEEECCCCCHHHHHHHHHHHHHhCCCceEEeeecCCCccccccccCCCcCCCCCCCC-CC--CCCCCcEEEEE
Q 002001 553 LQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVS-PE--IVRDPHLFTFS 629 (983)
Q Consensus 553 L~~~~~iyvW~G~~ss~~er~~A~~va~~l~~~~~~~~v~EG~E~~~FW~~LGgk~~y~~~~~~-~~--~~~~prLF~~S 629 (983)
|+++++||+|+|++|+.+||++|+.+|+.|.. ++.++.||+||++||.+|||+.+|++.... ++ ....||||+||
T Consensus 543 L~~~~~iyvW~G~~s~~~er~~A~~~a~~l~~--~~~~v~EG~E~~~FW~~LGg~~~y~~~~~~~~~~~~~~~~rLf~~s 620 (729)
T 1d0n_A 543 LKTPSAAYLWVGAGASEAEKTGAQELLRVLRA--QPVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACS 620 (729)
T ss_dssp EECSSCCBCEECTTCCHHHHHHHHHHHHHHTC--CCCCEETTCCCHHHHHTTTSCCCCCCCCCCSTTHHHHSCCEEEEEE
T ss_pred EecCCeEEEEECCCCCHHHHHHHHHHHHHhcc--CcEEEeCCCChHHHHHhcCCCCccCcccccccccccccCCeEEEEE
Confidence 99999999999999999999999999999984 478899999999999999999999987654 22 15789999999
Q ss_pred ecCCceeEeeec-ccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHHHHHHHhhhcccCCCCCCCcEEEecCCC
Q 002001 630 FNKGKFEVEEVY-NFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGN 708 (983)
Q Consensus 630 ~~~G~~~v~EI~-~FsQdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~r~~~~pI~~V~eG~ 708 (983)
+.+|+|.++||. +|+|+||+++|||||||+++||||||+.|+..||+.||.+|++||++++. +|++.+||++|.+|+
T Consensus 621 ~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~er~~al~~A~~Y~~~~~~--~r~~~~pi~~V~~G~ 698 (729)
T 1d0n_A 621 NKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPA--HRDRRTPITVVKQGF 698 (729)
T ss_dssp CTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHHHHSSHHHHHHHHHHHCTT--CCCTTCCEEEEETTC
T ss_pred cCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhCcc--cCCCCCcEEEEeCCC
Confidence 999999999999 99999999999999999999999999999999999999999999999775 688889999999999
Q ss_pred CCccccccee-cCCCcccccCchHHHHHHHH
Q 002001 709 EPCFCTTFFS-WDPTKATVQGNSFQKKVALL 738 (983)
Q Consensus 709 EP~~Ft~~F~-Wd~~k~~~~~~s~~~~~~~~ 738 (983)
||+.||++|+ ||+.+|. +++|+++.++|
T Consensus 699 Ep~~F~~~F~~Wd~~~~~--~~~~~~~~~~~ 727 (729)
T 1d0n_A 699 EPPSFVGWFLGWDDSYWS--VDPLDRALAEL 727 (729)
T ss_dssp CCHHHHTTCTTCCGGGGT--SCHHHHHHHHH
T ss_pred CCHHHHhhhhhcCccccC--CccHHHHHHhh
Confidence 9999999999 9999975 57899998877
|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A | Back alignment and structure |
|---|
| >1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A | Back alignment and structure |
|---|
| >2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A | Back alignment and structure |
|---|
| >1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1 | Back alignment and structure |
|---|
| >1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B* | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 983 | ||||
| d3cipg1 | 124 | d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) | 2e-55 | |
| d3cipg1 | 124 | d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) | 2e-36 | |
| d1j72a1 | 114 | d.109.1.1 (A:11-124) Macrophage capping protein Ca | 4e-51 | |
| d1j72a1 | 114 | d.109.1.1 (A:11-124) Macrophage capping protein Ca | 2e-31 | |
| d2vika_ | 126 | d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chic | 9e-47 | |
| d2vika_ | 126 | d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chic | 2e-32 | |
| d2fh1a1 | 121 | d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapien | 1e-44 | |
| d2fh1a1 | 121 | d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapien | 1e-34 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 2e-31 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 2e-18 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 2e-15 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 9e-13 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 0.003 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 3e-31 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 4e-16 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 3e-15 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 6e-14 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 7e-04 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 1e-29 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 2e-16 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 1e-15 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 5e-10 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 0.002 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 3e-25 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 5e-20 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 5e-15 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 1e-05 | |
| d1yu5x1 | 67 | a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) | 3e-22 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 4e-22 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 1e-21 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 2e-12 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 6e-09 | |
| d1qzpa_ | 68 | a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId | 4e-22 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 2e-20 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 2e-19 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 4e-14 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 1e-10 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 7e-07 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 6e-04 | |
| d1ujsa_ | 88 | a.14.1.1 (A:) Actin-binding LIM protein homologue | 2e-19 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 1e-18 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 3e-18 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 4e-13 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 3e-11 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 1e-10 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 4e-04 | |
| d1unda_ | 36 | a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxI | 5e-15 | |
| d1yu8x1 | 35 | a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) | 2e-14 | |
| d1pd0a4 | 173 | d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha | 0.003 |
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Gelsolin-like superfamily: Actin depolymerizing proteins family: Gelsolin-like domain: Gelsolin species: Human (Homo sapiens) [TaxId: 9606]
Score = 185 bits (471), Expect = 2e-55
Identities = 63/120 (52%), Positives = 83/120 (69%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 5 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 64
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 65 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 124
|
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 126 | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 126 | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 67 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]} Length = 36 | Back information, alignment and structure |
|---|
| >d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 35 | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 983 | |||
| d3cipg1 | 124 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1j72a1 | 114 | Macrophage capping protein Cap G {Human (Homo sapi | 100.0 | |
| d2vika_ | 126 | Villin, domain 1 (res. 1-126) {Chicken (Gallus gal | 100.0 | |
| d2fh1a1 | 121 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3cipg1 | 124 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1j72a1 | 114 | Macrophage capping protein Cap G {Human (Homo sapi | 100.0 | |
| d2vika_ | 126 | Villin, domain 1 (res. 1-126) {Chicken (Gallus gal | 100.0 | |
| d2fh1a1 | 121 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1qzpa_ | 68 | Dematin {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1yu5x1 | 67 | Villin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.91 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 99.9 | |
| d1ujsa_ | 88 | Actin-binding LIM protein homologue KIAA0843 {Huma | 99.9 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 99.87 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 99.87 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 99.86 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 99.83 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 99.83 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 99.79 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 99.77 | |
| d1unda_ | 36 | Advillin {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1yu8x1 | 35 | Villin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.67 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.28 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.26 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.89 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 81.67 |
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Gelsolin-like superfamily: Actin depolymerizing proteins family: Gelsolin-like domain: Gelsolin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-41 Score=320.49 Aligned_cols=121 Identities=52% Similarity=0.952 Sum_probs=118.7
Q ss_pred ChhhhcCCccccEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecCCCCCceEEEEEEecCCCChhhhhhHHHHHHHH
Q 002001 9 DPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVEL 88 (983)
Q Consensus 9 d~~f~~~g~~~gl~IWrIe~~~~v~vp~~~~G~Fy~gD~YIVL~t~~~~~~~~~~~Ih~W~G~~ss~de~g~AA~~aveL 88 (983)
-|+|.++|+++||+||||+++++++||++.||+||+||||||||||..++++.+|+||||+|++||++++++||++|++|
T Consensus 4 ~p~~~~~g~~~Gl~VWrIe~~~~~~vp~~~~G~Fy~gd~YIil~ty~~~~g~~~~~iy~W~G~~ss~~e~~~aa~~aveL 83 (124)
T d3cipg1 4 HPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQL 83 (124)
T ss_dssp CHHHHHTTSSSEEEEEEEETTEEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred chhhhcCCCCCceEEEEEeCCEEEECCHHHccEEeCCCEEEEEEEEEcCCCCEeEEEEEEECCCCChhHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHhCCcceEEEeeccCCCHHHHhhcCCcEEEecCcccCCC
Q 002001 89 DAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129 (983)
Q Consensus 89 d~~Lgg~~vq~Re~QG~Es~~FLs~Fk~~ii~~~Gg~~sgf 129 (983)
|++|+|+++|+||+||+||++||+||+++|||++||++|||
T Consensus 84 d~~l~g~~vq~R~~Qg~Ep~~Fl~lF~~~~ii~~GG~~sgf 124 (124)
T d3cipg1 84 DDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 124 (124)
T ss_dssp HHHTTTCEEEEEEETTCCCHHHHTTCTTCCEEESCCCCCCC
T ss_pred HHHcCCCccEEEEecCCCCHHHHHHhCCCeEEeeCCcccCC
Confidence 99999999999999999999999999999999999999997
|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|