Citrus Sinensis ID: 002054

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970----
MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVWASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQSSKSTLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTEDGDEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVDS
cccccccccccccccccHHHHcccccEEEcccccccccccccccccccccccccccccEEEEEEEccEEEEEEccccccccccEEEEEEcccEEEEEEEcccccccccccccEEcccccccccccccccccccccccccccHHHHHcccccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHccccccccEEEEEEEEEccEEEEcccHHHHHcccccEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccccccccccccccHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHccccccccHHHHHccEEccccccccccccEEEEEccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccccHHHHHHHHHcccEEEECccEEEEEEccHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEcEEEEEEcccccCEEEEEccccccccccccccccccEEEEEEEEEccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEcccccEEEEEEccccccccccccEEEEEEccccccccCEEEcccc
**********LLNNLPPFLTWRALGFRTICSGRLGFAPCE**********AGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA***************************************************************************************************************************************************A*VS*KNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD*
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MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVWASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQSSKSTLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTEDGDEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVDS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Polyribonucleotide nucleotidyltransferase 2, mitochondrial Involved in the 3'-end maturation of mitochondrial mRNAs, rRNAs and tRNAs. Functions as a poly(A) mRNA 3'-5' degrading exonuclease.probableQ6KAI0
Polyribonucleotide nucleotidyltransferase 2, mitochondrial Involved in the 3'-end maturation of mitochondrial mRNAs, rRNAs and tRNAs. Functions as a poly(A) mRNA 3'-5' degrading exonuclease and is required for the degradation of highly expressed transcripts of non-coding regions.probableQ9S7G6

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
2.-.-.-Transferases.probable
2.7.-.-Transferring phosphorous-containing groups.probable
2.7.7.-Nucleotidyltransferases.probable
2.7.7.8Polyribonucleotide nucleotidyltransferase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3CDI, chain A
Confidence level:very confident
Coverage over the Query: 56-413,427-604
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Template: 1KL9, chain A
Confidence level:very confident
Coverage over the Query: 681-714,728-790
View the alignment between query and template
View the model in PyMOL
Template: 2EQS, chain A
Confidence level:very confident
Coverage over the Query: 901-973
View the alignment between query and template
View the model in PyMOL
Template: 3GO5, chain A
Confidence level:confident
Coverage over the Query: 682-718,729-806,863-973
View the alignment between query and template
View the model in PyMOL
Template: 3GO5, chain A
Confidence level:confident
Coverage over the Query: 680-787,804-839
View the alignment between query and template
View the model in PyMOL