Citrus Sinensis ID: 002119

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960----
MQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
ccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHccccccccEEEEEEccccccEEEEEEEEEEEccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccc
cccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccHHHHEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEEccccccccccccEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHcccEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHccccccccccHHHccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHccccccHHHHcccccccccccccccccccccccccHHcccHHccccccccccccccccccccccccccccHHHHHHHHccccHcccccccccccccHHcccccHHHHcccccHHHHHcccccccccccccccccccHHHHHccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHcccccccccccHHHHHcHccEcccccccccccccccccccccEccccccccccccccHHHHHcHcEEEEEEEcc
mqkendfipnypnlpsKLICMLHsvtlhadpetdEVYAQMTLQPVNKYEKEAILASDmglkqnrqpteFFCKtltasdtsthggfsvprraaekifppldysmqppaqeivardlhdttwtfrhiyrgqpkrhllttgWSVFVStkrlfagdsvlFIRDEKSQLLLGIRRAnrqqpalsssvissdsMHIGILAAAAHaaannspftifynpraspsefvipLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYmgtitsisdldplrwknsqwrnlqvgwdestagerpsrvslwetepvvtpfyicpppffrpkfpkqpgmpddesDIENAFKRampwlgddfgmkdatssifpglSLVQWMSMQqnnqfpaaqsgffpsmvsstglhsnfgtddpsklLNFQAsalaapnlqfskanpqnqvnqlpqspiaWTQQQQLQHLLQnplnqqqqqhpQLHQQRQQQQQLLHPQQSQQQQQQQQnhhhhnqqpppppqlqpsptpphsqsqsqspvpqrpqqqpqqqqqqpqqqiflpthvnngvlvpnanqnvqqptvysqlqqpqlltsntqapqgilsnnknsyqltslpqdsQFQQQMeqstgplqrqqQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLlspagsllqpQLLQQQLAHQQNqqlsqlppsqnhqqqlsnnlsasvlvqpqqlpmnqpqnqnrpltgtrahsnhtdgdapscstspssnncqispsnflnrnqqgpamlmgdsvvepssnLVQELHsksdarikhelpiskgpehlkyngsmtdqveasssgtsycldpgniqqnfslptycldgdtqshprnslpfvanidgmapdtllsrgydsQKDLHNLLsnyggtprdieTELStaaissqsfavpnipfkpacsnevgineagvlgnglwanqTQRMRTFTKVCYAIYSL
MQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLtasdtsthggfsvpRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIyrgqpkrhllttGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITsisdldplrwkNSQWRNLqvgwdestagerpsrvslwetepvvTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHsksdarikhelpiskgpehlkyNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLwanqtqrmrTFTKVCYAIYSL
MQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALsssvissdsMHIGILaaaahaaaNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICpppffrpkfpkqpGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTqqqqlqhllqnplnqqqqqhpqlhqqrqqqqqllhpqqsqqqqqqqqnhhhhnqqpppppqlqpsptpphsqsqsqspvpqrpqqqpqqqqqqpqqqIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPqdsqfqqqmeqSTGplqrqqqqsqlqqsslqflqqslaqraqqqpqvqqlaqqsmsdqqlqsqlqqklqqqqqqqllspagsllqpqllqqqlahqqnqqlsqlppsqnhqqqlsnnlsasvlvqpqqlpmnqpqnqnRPLTGTRAHSNHTDGDApscstspssnncQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
*******IPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILAS**********TEFFCKTLTA*****************KIFPPLDY*****AQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRR****************SMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTA****SRVSLWETEPVVTPFYICPPPFFR*******************FKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSM*********************************************************************************************************************************************************************************VL***********************************************************************************************************************************************************************************************************************************************************************************************YCLDPGNIQQNFSLPTYCLDG*********LPFVANIDGMAPDTLLS********LHNLLSNYG************AAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIY**
***********PNLPSKLICMLHSVTLHADPETDEVYAQMTLQPV************************FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRR******************HIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTP******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************L***TQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHN*************************FAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
MQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRA************SSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDE*********VSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPL**********************************************************************************QQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLP*****************************LQFLQ******************************************LSPAGSLLQPQLLQQ***********************SNNLSASVLVQPQQLPMNQPQ*******************************CQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
******FIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVN******ILASD*****NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQ***LS*S**SSD*MHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDD**DIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASA*************************************************************************************************************************************NGVL*******************************************************************************************************************************************************************************************************************************************SVV****N**QELH**SD**IK************K*NGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query964 2.2.26 [Sep-21-2011]
Q8RYC81086 Auxin response factor 19 yes no 0.442 0.393 0.833 0.0
P93022 1164 Auxin response factor 7 O no no 0.448 0.371 0.804 0.0
A3B9A01055 Auxin response factor 16 yes no 0.428 0.391 0.781 0.0
A2YAA51055 Auxin response factor 16 N/A no 0.428 0.391 0.779 0.0
Q6Z2W31142 Auxin response factor 5 O yes no 0.495 0.418 0.642 1e-165
Q0D9R7 1161 Auxin response factor 19 yes no 0.410 0.341 0.737 1e-158
Q6YZW01116 Auxin response factor 21 no no 0.432 0.373 0.665 1e-156
Q6H6V4908 Auxin response factor 6 O no no 0.406 0.431 0.617 1e-134
A2X1A1908 Auxin response factor 6 O N/A no 0.406 0.431 0.617 1e-134
Q9ZTX8935 Auxin response factor 6 O no no 0.367 0.378 0.678 1e-134
>sp|Q8RYC8|ARFS_ARATH Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2 Back     alignment and function desciption
 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/427 (83%), Positives = 393/427 (92%)

Query: 1   MQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGL 60
           MQK+ DFIPNYPNLPSKLIC+LHSVTLHAD ETDEVYAQMTLQPVNKY++EA+LASDMGL
Sbjct: 57  MQKQTDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGL 116

Query: 61  KQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTW 120
           K NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQEIVA+DLHDTTW
Sbjct: 117 KLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTW 176

Query: 121 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSS 180
           TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLF+RDEKSQL+LGIRRANRQ P LSS
Sbjct: 177 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSS 236

Query: 181 SVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRF 240
           SVISSDSMHIGILAAAAHA AN+SPFTIF+NPRASPSEFV+PLAKYNKA+Y QVSLGMRF
Sbjct: 237 SVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRF 296

Query: 241 RMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEP 300
           RMMFETE+ GVRRYMGT+T ISDLDP+RWK SQWRNLQVGWDESTAG+RPSRVS+WE EP
Sbjct: 297 RMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEP 356

Query: 301 VVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSL 360
           V+TPFYICPPPFFRPK+P+QPGMPDDE D+ENAFKRAMPW+G+DFGMKDA SS+FPGLSL
Sbjct: 357 VITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSL 416

Query: 361 VQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKAN 420
           VQWMSMQQNN    + +   PS +SS  L +NF ++DPSKLLNFQ+  L++ N QF+K N
Sbjct: 417 VQWMSMQQNNPLSGSATPQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANSQFNKPN 476

Query: 421 PQNQVNQ 427
             N ++Q
Sbjct: 477 TVNHISQ 483
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7.
Arabidopsis thaliana (taxid: 3702)
>sp|P93022|ARFG_ARATH Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2 Back     alignment and function description
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|A2YAA5|ARFP_ORYSI Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z2W3|ARFE_ORYSJ Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2 Back     alignment and function description
>sp|Q0D9R7|ARFS_ORYSJ Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2 Back     alignment and function description
>sp|Q6YZW0|ARFU_ORYSJ Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2 Back     alignment and function description
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function description
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query964
357479369 1120 Auxin response factor [Medicago truncatu 0.451 0.388 0.878 0.0
255550359 1119 Auxin response factor, putative [Ricinus 0.452 0.389 0.908 0.0
2240692041057 predicted protein [Populus trichocarpa] 0.463 0.422 0.897 0.0
297738525878 unnamed protein product [Vitis vinifera] 0.420 0.461 0.899 0.0
225444647 1084 PREDICTED: auxin response factor 19-like 0.450 0.400 0.891 0.0
356530459 1125 PREDICTED: uncharacterized protein LOC10 0.464 0.398 0.868 0.0
356556410 1122 PREDICTED: uncharacterized protein LOC10 0.462 0.397 0.867 0.0
356565674 1136 PREDICTED: uncharacterized protein LOC10 0.451 0.382 0.880 0.0
449488115 1097 PREDICTED: auxin response factor 19-like 0.450 0.395 0.889 0.0
356547962 1131 PREDICTED: uncharacterized protein LOC10 0.451 0.384 0.880 0.0
>gi|357479369|ref|XP_003609970.1| Auxin response factor [Medicago truncatula] gi|355511025|gb|AES92167.1| Auxin response factor [Medicago truncatula] Back     alignment and taxonomy information
 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/435 (87%), Positives = 408/435 (93%)

Query: 1   MQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGL 60
           MQK+ DFIP+YPNLPSKLICMLH+V LHADPETDEVYAQMTLQPVNKY+K+AILASD GL
Sbjct: 57  MQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDFGL 116

Query: 61  KQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTW 120
           KQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQE+VA+DLHD TW
Sbjct: 117 KQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTW 176

Query: 121 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSS 180
            FRHIYRGQPKRHLLTTGWSVF+STKRLFAGDSVLFIRDEK QLLLG+RRANRQQPALSS
Sbjct: 177 AFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSS 236

Query: 181 SVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRF 240
           SVISSDSMHIGILAAAAHAAANNSPFTI+YNPRASPSEFV+PLAKYNKAMYTQVSLGMRF
Sbjct: 237 SVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRF 296

Query: 241 RMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEP 300
           RMMFETEESGVRRYMGT+T ISDLDP+RWKNSQWRNLQVGWDESTAGERPSRVS+W+ EP
Sbjct: 297 RMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEP 356

Query: 301 VVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSL 360
           VVTPFYICPPPFFR  FP  PGMPDD SD+EN+FKRAMPWLGDDFGMKDA+SS+FPGLSL
Sbjct: 357 VVTPFYICPPPFFRQNFPGHPGMPDDGSDVENSFKRAMPWLGDDFGMKDASSSVFPGLSL 416

Query: 361 VQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKAN 420
           VQWMSMQQ NQF  AQSG FPSM+SS  LHSN  TDDPSKLL+FQA AL+APNLQF+K N
Sbjct: 417 VQWMSMQQKNQFSGAQSGCFPSMLSSNTLHSNLSTDDPSKLLSFQAPALSAPNLQFNKPN 476

Query: 421 PQNQVNQLPQSPIAW 435
             NQ+NQL QSP +W
Sbjct: 477 LPNQINQLQQSPTSW 491

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550359|ref|XP_002516230.1| Auxin response factor, putative [Ricinus communis] gi|223544716|gb|EEF46232.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224069204|ref|XP_002326300.1| predicted protein [Populus trichocarpa] gi|222833493|gb|EEE71970.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738525|emb|CBI27770.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444647|ref|XP_002276637.1| PREDICTED: auxin response factor 19-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530459|ref|XP_003533798.1| PREDICTED: uncharacterized protein LOC100804628 [Glycine max] Back     alignment and taxonomy information
>gi|356556410|ref|XP_003546519.1| PREDICTED: uncharacterized protein LOC100815277 [Glycine max] Back     alignment and taxonomy information
>gi|356565674|ref|XP_003551063.1| PREDICTED: uncharacterized protein LOC100816054 [Glycine max] Back     alignment and taxonomy information
>gi|449488115|ref|XP_004157943.1| PREDICTED: auxin response factor 19-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356547962|ref|XP_003542373.1| PREDICTED: uncharacterized protein LOC100805456 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query964
TAIR|locus:22022051086 ARF19 "auxin response factor 1 0.447 0.396 0.765 6.7e-245
TAIR|locus:2204237935 ARF6 "auxin response factor 6" 0.429 0.442 0.560 1.5e-119
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.419 0.498 0.545 1.6e-117
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.431 0.461 0.536 2.9e-116
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.307 0.344 0.501 2.3e-78
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.302 0.439 0.486 7.3e-75
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.295 0.446 0.479 4.7e-74
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.304 0.373 0.486 2e-72
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.297 0.461 0.486 7.6e-72
TAIR|locus:2057609608 ETT "ETTIN" [Arabidopsis thali 0.310 0.491 0.474 7.7e-71
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1774 (629.5 bits), Expect = 6.7e-245, Sum P(3) = 6.7e-245
 Identities = 330/431 (76%), Positives = 366/431 (84%)

Query:     1 MQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGL 60
             MQK+ DFIPNYPNLPSKLIC+LHSVTLHAD ETDEVYAQMTLQPVNKY++EA+LASDMGL
Sbjct:    57 MQKQTDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGL 116

Query:    61 KQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTW 120
             K NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQEIVA+DLHDTTW
Sbjct:   117 KLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTW 176

Query:   121 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXX 180
             TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLF+RDEKSQL+LGIRRANRQ P L  
Sbjct:   177 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSS 236

Query:   181 XXXXXXXMHIGILXXXXXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRF 240
                    MHIGIL        N+SPFTIF+NPRASPSEFV+PLAKYNKA+Y QVSLGMRF
Sbjct:   237 SVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRF 296

Query:   241 RMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEP 300
             RMMFETE+ GVRRYMGT+T ISDLDP+RWK SQWRNLQVGWDESTAG+RPSRVS+WE EP
Sbjct:   297 RMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEP 356

Query:   301 VVTPFYICXXXXXXXXXXXXXGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSL 360
             V+TPFYIC             GMPDDE D+ENAFKRAMPW+G+DFGMKDA SS+FPGLSL
Sbjct:   357 VITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSL 416

Query:   361 VQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKAN 420
             VQWMSMQQNN    + +   PS +SS  L +NF ++DPSKLLNFQ+  L++ N QF+K N
Sbjct:   417 VQWMSMQQNNPLSGSATPQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANSQFNKPN 476

Query:   421 PQNQVNQLPQS 431
               N ++Q  Q+
Sbjct:   477 TVNHISQQMQA 487
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0009733 "response to auxin stimulus" evidence=RCA;IMP;NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0048366 "leaf development" evidence=IGI
GO:0048527 "lateral root development" evidence=IGI;RCA
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0003677 "DNA binding" evidence=IDA
GO:0010311 "lateral root formation" evidence=IGI
GO:0007155 "cell adhesion" evidence=RCA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0046983 "protein dimerization activity" evidence=IDA
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057609 ETT "ETTIN" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A3B9A0ARFP_ORYSJNo assigned EC number0.78160.42840.3914yesno
Q8RYC8ARFS_ARATHNo assigned EC number0.83370.44290.3931yesno
Q0D9R7ARFS_ORYSJNo assigned EC number0.73770.41070.3410yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00280060
hypothetical protein (1057 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query964
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 5e-48
pfam0236297 pfam02362, B3, B3 DNA binding domain 7e-30
smart0101996 smart01019, B3, B3 DNA binding domain 2e-28
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 2e-22
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 6e-15
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 4e-14
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-12
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 3e-12
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 9e-12
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 6e-11
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-10
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 3e-09
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 7e-09
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 2e-08
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 6e-08
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 7e-08
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 2e-07
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 6e-07
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 8e-07
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 2e-06
TIGR00618 1042 TIGR00618, sbcc, exonuclease SbcC 2e-06
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 3e-06
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 4e-06
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 4e-06
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 6e-06
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 6e-06
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 9e-06
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 1e-05
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 2e-05
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 2e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 3e-05
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 4e-05
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 4e-05
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 5e-05
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 6e-05
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 8e-05
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 1e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 1e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 1e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 2e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 2e-04
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 2e-04
PRK102461047 PRK10246, PRK10246, exonuclease subunit SbcC; Prov 2e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 3e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 3e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 3e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 3e-04
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 3e-04
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 4e-04
COG5624505 COG5624, TAF61, Transcription initiation factor TF 4e-04
PRK10246 1047 PRK10246, PRK10246, exonuclease subunit SbcC; Prov 5e-04
PRK10927319 PRK10927, PRK10927, essential cell division protei 5e-04
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 7e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 8e-04
COG1570440 COG1570, XseA, Exonuclease VII, large subunit [DNA 8e-04
smart00935140 smart00935, OmpH, Outer membrane protein (OmpH-lik 9e-04
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 0.001
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.001
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.001
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.001
COG5624505 COG5624, TAF61, Transcription initiation factor TF 0.001
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.001
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.001
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.002
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.002
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 0.002
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
PRK10920390 PRK10920, PRK10920, putative uroporphyrinogen III 0.002
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.002
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.002
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 0.003
PRK10920390 PRK10920, PRK10920, putative uroporphyrinogen III 0.003
TIGR01000457 TIGR01000, bacteriocin_acc, bacteriocin secretion 0.003
pfam03157779 pfam03157, Glutenin_hmw, High molecular weight glu 0.003
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.004
pfam04652315 pfam04652, DUF605, Vta1 like 0.004
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 0.004
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  164 bits (417), Expect = 5e-48
 Identities = 55/83 (66%), Positives = 67/83 (80%)

Query: 196 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYM 255
           AAHAA+  SPF +FYNPRAS SEFV+P AKY KAM    S+GMRF+M FETE+S  RR+ 
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRFS 60

Query: 256 GTITSISDLDPLRWKNSQWRNLQ 278
           GTI+ +SDLDP+RW NS+WR+LQ
Sbjct: 61  GTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional Back     alignment and domain information
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory protein Back     alignment and domain information
>gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 964
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.78
KOG06441113 consensus Uncharacterized conserved protein, conta 99.53
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.17
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.74
KOG35982220 consensus Thyroid hormone receptor-associated prot 88.01
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=4.9e-36  Score=268.83  Aligned_cols=83  Identities=64%  Similarity=1.097  Sum_probs=81.7

Q ss_pred             HHHHHhcCCcEEEEEcCCCCCCccccchHhHhHHHhcccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCcc
Q 002119          196 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWR  275 (964)
Q Consensus       196 Aahaaatgs~FtV~Y~PRas~sEFVVp~~kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR  275 (964)
                      |+|||++|++|+|+||||++++|||||++||++||+++|++||||||.||+||+++++|+|||+||+++||+|||+|+||
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~WR   80 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKWR   80 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cee
Q 002119          276 NLQ  278 (964)
Q Consensus       276 ~Lq  278 (964)
                      |||
T Consensus        81 ~Lq   83 (83)
T PF06507_consen   81 MLQ   83 (83)
T ss_pred             cCc
Confidence            996

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query964
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 2e-07
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 69  FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRG 128
            F K +T SD        +P+  AEK FP    ++      +   D++   W FR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72
Query: 129 QPKRHLLTTGWSVFVSTKRLFAGDSVLFIRD--EKSQLLLG 167
             + ++LT GWS FV  K L AGD V F R   +  QL +G
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 113
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query964
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 3e-43
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-10
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-10
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-09
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-09
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 6e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3ghg_B461 Fibrinogen beta chain; triple-stranded coiled coil 1e-05
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 3e-05
3lj5_A725 Portal protein, protein GP1; DNA ejection, molecul 7e-05
1yvl_A 683 Signal transducer and activator of transcription 1 4e-04
3ghg_C411 Fibrinogen gamma chain; triple-stranded coiled coi 4e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  152 bits (385), Expect = 3e-43
 Identities = 39/125 (31%), Positives = 53/125 (42%)

Query: 61  KQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTW 120
              R     F K +T SD        +P+  AEK FP    ++      +   D++   W
Sbjct: 5   SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVW 64

Query: 121 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSS 180
            FR+ Y    + ++LT GWS FV  K L AGD V F R       L I   +R    L +
Sbjct: 65  RFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDA 124

Query: 181 SVISS 185
           S  SS
Sbjct: 125 SGPSS 129
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Length = 461 Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531 Back     alignment and structure
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725 Back     alignment and structure
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 Back     alignment and structure
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query964
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.96
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.82
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.66
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 96.76
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 95.85
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 94.64
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 88.51
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.96  E-value=1.5e-29  Score=239.48  Aligned_cols=113  Identities=31%  Similarity=0.511  Sum_probs=104.3

Q ss_pred             CCCCceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceecccchhh
Q 002119           63 NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVF  142 (964)
Q Consensus        63 ~~~~~~sF~KtLTaSDVs~~GrLsVPkr~AE~~FPpLD~s~~~PsqeLvakDlhGkeW~FRhiyRgqprRhlLTTGWS~F  142 (964)
                      .++..++|+|+||+|||+++++|+||+++|++|||.++.....++++|.++|.+|++|+|||+||+++++|+|++||+.|
T Consensus         7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F   86 (130)
T 1wid_A            7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF   86 (130)
T ss_dssp             -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred             CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence            46677899999999999999999999999999999999866667899999999999999999999989999999999999


Q ss_pred             hccCCCCCCCeEEEEEcC--CCcEEEEEEeccCCC
Q 002119          143 VSTKRLFAGDSVLFIRDE--KSQLLLGIRRANRQQ  175 (964)
Q Consensus       143 Vr~KkLvaGDsVVF~R~e--~GeL~VGIRRA~r~~  175 (964)
                      |++|+|++||+|+|+|++  ++.|+|+|||+.+..
T Consensus        87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            999999999999999986  467999999998754
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 964
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 4e-39
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-25
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 3e-15
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  138 bits (349), Expect = 4e-39
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 64  RQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFR 123
           R     F K +T SD        +P+  AEK FP    ++      +   D++   W FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 124 HIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKS--QLLLGIRRANRQQP 176
           + Y    + ++LT GWS FV  K L AGD V F R      QL +G +  +    
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 115
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query964
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.95
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.78
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.56
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=1.1e-27  Score=218.79  Aligned_cols=108  Identities=31%  Similarity=0.517  Sum_probs=101.7

Q ss_pred             ceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceecccchhhhccC
Q 002119           67 TEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTK  146 (964)
Q Consensus        67 ~~sF~KtLTaSDVs~~GrLsVPkr~AE~~FPpLD~s~~~PsqeLvakDlhGkeW~FRhiyRgqprRhlLTTGWS~FVr~K  146 (964)
                      .++|+|+||+|||+++|||+||+++|++|||+++.....++++|.++|.+|++|+|+|+||+..++|+|++||..||++|
T Consensus         4 ~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~~   83 (117)
T d1wida_           4 EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEK   83 (117)
T ss_dssp             EEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHT
T ss_pred             ceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHHc
Confidence            47999999999999999999999999999999999888889999999999999999999998888899999999999999


Q ss_pred             CCCCCCeEEEEEc--CCCcEEEEEEeccCC
Q 002119          147 RLFAGDSVLFIRD--EKSQLLLGIRRANRQ  174 (964)
Q Consensus       147 kLvaGDsVVF~R~--e~GeL~VGIRRA~r~  174 (964)
                      +|++||+|+|+|+  ++++|+|++||+...
T Consensus        84 ~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          84 NLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             CCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence            9999999999997  477999999998753
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure