Citrus Sinensis ID: 002140
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 960 | 2.2.26 [Sep-21-2011] | |||||||
| Q54NP8 | 1922 | Kinesin-related protein 4 | yes | no | 0.354 | 0.176 | 0.432 | 1e-74 | |
| Q6S001 | 685 | Kinesin-related protein 1 | no | no | 0.370 | 0.519 | 0.417 | 3e-72 | |
| Q6RT24 | 2474 | Centromere-associated pro | yes | no | 0.392 | 0.152 | 0.417 | 1e-70 | |
| Q02224 | 2701 | Centromere-associated pro | yes | no | 0.401 | 0.142 | 0.413 | 1e-70 | |
| O15066 | 747 | Kinesin-like protein KIF3 | no | no | 0.364 | 0.468 | 0.387 | 2e-60 | |
| Q61771 | 747 | Kinesin-like protein KIF3 | no | no | 0.364 | 0.468 | 0.385 | 3e-60 | |
| P46869 | 786 | Kinesin-like protein FLA1 | N/A | no | 0.365 | 0.446 | 0.371 | 1e-59 | |
| P46871 | 742 | Kinesin-II 95 kDa subunit | no | no | 0.371 | 0.481 | 0.363 | 6e-58 | |
| Q4R628 | 702 | Kinesin-like protein KIF3 | N/A | no | 0.361 | 0.494 | 0.367 | 7e-57 | |
| P46872 | 699 | Kinesin-II 85 kDa subunit | no | no | 0.366 | 0.503 | 0.359 | 8e-57 |
| >sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1 | Back alignment and function desciption |
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Score = 282 bits (721), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/365 (43%), Positives = 230/365 (63%), Gaps = 25/365 (6%)
Query: 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSA-YTFDRVFWGDCS 82
KI V +R+RPL+ +E+ D+ W DT L +N P+ +T+D VF D +
Sbjct: 22 KIKVAIRVRPLNSRELGIDQKIPWSISKDTISLSQN--------PNINFTYDYVFGIDSN 73
Query: 83 TTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------TGITECTVADIFDYIH 136
T VY AK I S ++GIN +IFAYGQTSSGKT++M GI + ++ DIF I
Sbjct: 74 TIDVYNAIAKSIVNSSLNGINGTIFAYGQTSSGKTFSMRGTESIPGIIKLSIKDIFKSIE 133
Query: 137 RH-EERAFVLKFSAMEIYNEAIRDLLS---TDNTPLRLLDDPEKGVVVEKVTEEILKDWN 192
E+ ++LK S +EIYNE I+DLL+ ++ L++ +D KGVVV + EEI+ +
Sbjct: 134 DSILEKDYLLKVSYLEIYNEEIKDLLNPTISNKKKLKIHEDIYKGVVVANLKEEIVISPD 193
Query: 193 HLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252
+ L++ E +R IG T++N+ SSRSH I R+ I+S+ K+N T +++ VDL
Sbjct: 194 QIFALMNFGEERRHIGSTMMNDSSSRSHTIFRMQIQSTC-----KQNGTIQMSTLTLVDL 248
Query: 253 AGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQPCL 311
AGSER S + G RLKEG HIN+SL+TLS VI KLS+ + H+ YRDSKLTR+LQP L
Sbjct: 249 AGSERVSSTGAEGVRLKEGTHINKSLMTLSKVISKLSEEKTQQHVPYRDSKLTRILQPSL 308
Query: 312 GGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELAR 371
GGN++TAI+CT++PA +H E++ +TL FA AK V T ++N V ++K + E+
Sbjct: 309 GGNSKTAILCTITPATTHQEESISTLQFAKRAKRVKTNYKINQVADANTMLKKYESEILE 368
Query: 372 LESEL 376
L+++L
Sbjct: 369 LQNQL 373
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Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end (By similarity). Cooperates with dynein in organizing spindle assembly during cell division. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6S001|KIF11_DICDI Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1 | Back alignment and function description |
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| >sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2 | Back alignment and function description |
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| >sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1 | Back alignment and function description |
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| >sp|P46869|FLA10_CHLRE Kinesin-like protein FLA10 OS=Chlamydomonas reinhardtii GN=FLA10 PE=1 SV=1 | Back alignment and function description |
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| >sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1 | Back alignment and function description |
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| >sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP85 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 960 | ||||||
| 359474911 | 957 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.988 | 0.707 | 0.0 | |
| 147775817 | 969 | hypothetical protein VITISV_029516 [Viti | 0.986 | 0.977 | 0.699 | 0.0 | |
| 224105297 | 945 | predicted protein [Populus trichocarpa] | 0.923 | 0.938 | 0.661 | 0.0 | |
| 449461619 | 930 | PREDICTED: kinesin-like protein KIN12B-l | 0.954 | 0.984 | 0.649 | 0.0 | |
| 356544453 | 885 | PREDICTED: uncharacterized protein LOC10 | 0.903 | 0.979 | 0.623 | 0.0 | |
| 356541062 | 898 | PREDICTED: uncharacterized protein LOC10 | 0.918 | 0.982 | 0.616 | 0.0 | |
| 356509547 | 897 | PREDICTED: uncharacterized protein LOC10 | 0.910 | 0.974 | 0.600 | 0.0 | |
| 42569214 | 862 | ATP binding microtubule motor family pro | 0.884 | 0.984 | 0.589 | 0.0 | |
| 297824981 | 862 | kinesin motor family protein [Arabidopsi | 0.882 | 0.982 | 0.587 | 0.0 | |
| 357473571 | 853 | Kinesin-related protein [Medicago trunca | 0.867 | 0.976 | 0.597 | 0.0 |
| >gi|359474911|ref|XP_002275329.2| PREDICTED: uncharacterized protein LOC100250389 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1332 bits (3447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 687/971 (70%), Positives = 785/971 (80%), Gaps = 25/971 (2%)
Query: 1 MGAVGAEELMKMEKMQAPSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNT 60
MGA+ EEL + EKMQA +AREEKILVLVRLRPLSEKEI +E +DWECIN+ T+L+RN+
Sbjct: 1 MGALSGEELARWEKMQAATAREEKILVLVRLRPLSEKEIARNEVSDWECINENTVLFRNS 60
Query: 61 LREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120
L+E S FP+AY+FD+VF GDC+T QVYE+ AKEIALSVV+GINSSIFAYGQTSSGKTYTM
Sbjct: 61 LQERSMFPTAYSFDKVFRGDCTTRQVYEEAAKEIALSVVNGINSSIFAYGQTSSGKTYTM 120
Query: 121 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVV 180
GITE TVADI+DYI HEERAFVLKFSAMEIYNEA+RDLLSTDN PLRLLDDPE+G +V
Sbjct: 121 IGITEYTVADIYDYIQNHEERAFVLKFSAMEIYNEAVRDLLSTDNLPLRLLDDPERGTIV 180
Query: 181 EKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240
EK+TEE L+DW+HLK LLSICEAQR+IGET LNE SSRSHQI+RL IESSAREFLGK NS
Sbjct: 181 EKLTEETLRDWSHLKNLLSICEAQRQIGETSLNETSSRSHQILRLTIESSAREFLGKGNS 240
Query: 241 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 300
TTL+ASVNFVDLAGSERASQA+S GARLKEGCHINRSLLTL TVIRKLSKGR GH+NYRD
Sbjct: 241 TTLAASVNFVDLAGSERASQAMSAGARLKEGCHINRSLLTLGTVIRKLSKGRQGHVNYRD 300
Query: 301 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKA 360
SKLTR+LQP LGGNARTAIICTLSPARSHVEQ+RNTLLFA CAKEVTTKAQVNVVMSDKA
Sbjct: 301 SKLTRILQPSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTKAQVNVVMSDKA 360
Query: 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRV 420
LVKHLQKELARLESELRSPAPASSTCD+ ALLRKKDLQI KME+EIRELTK RD+A+SRV
Sbjct: 361 LVKHLQKELARLESELRSPAPASSTCDHTALLRKKDLQIDKMEKEIRELTKLRDIAESRV 420
Query: 421 EDLLRMVGCDQDSRQETGRNHNSHKQVSDIWEDEYSESEAS-GVADLHRMKNGVKKSNTT 479
EDLL+M+G DQ S Q TG ++ QV WED+ S SEA G D+ GV+ NTT
Sbjct: 421 EDLLQMIGNDQSSSQWTGIRNDPKSQVGIKWEDDCSVSEADPGCRDI-----GVRSFNTT 475
Query: 480 RFYDTESENNSEYLYH--PENNEDPTLSDCTSSPLPIGKKVVRSYSGKSLEENAGATTED 537
++ S +N++ YH P+ +E + D SSP+ +G VR EE A ED
Sbjct: 476 QYSGRGSGSNTQEKYHQLPQYSEGHSPFDGPSSPISVGNGFVRPDPRCGQEEIALEAGED 535
Query: 538 SDEYCREVQCIEMEGSSRFKNFESHALSNGENEGTLALTYEDGDVTGQEMISTPVNGDRE 597
D+ +EV+CIE+E SS+ KN +S S GENEG +A++ +GDVT E+IS P G+RE
Sbjct: 536 PDDLYKEVRCIEIEESSKHKNLKSLDTSTGENEG-MAVS-GNGDVTDGEIISAPTKGERE 593
Query: 598 ERRIQNGFTYGALEQRLNNVQKTIESLVSPYPDAGESSLRSLAEDMSSSRSLSLARSRSC 657
IQNGFTYGALEQ++ +VQKTIESLVSPYPD E S +L D SSRSL+L RS SC
Sbjct: 594 VSHIQNGFTYGALEQKIQDVQKTIESLVSPYPD--EPSPWALDADTPSSRSLTLTRSWSC 651
Query: 658 RAKLMAGSSSPSLEKGEQIESTPPNGFEKNFPGRPEGFQKK--LFSYGTNTSSLSRNDSL 715
RA LM GSSSP EK EQ STPP+GFEK+FPGRPE F+++ +YG N LSR DS
Sbjct: 652 RANLMTGSSSP-CEKVEQRLSTPPSGFEKDFPGRPESFRRRHPPLNYGANMPRLSRTDSQ 710
Query: 716 SSLESASI------KTSADEDITSIQTFVAGLNKMAKNQETGLQADNSEKNVKDVGLDPM 769
SS SA + KTSADEDITSIQTFVAGL +MAK QETG +AD EKNVKDVGLDPM
Sbjct: 711 SSFGSAFVDELKAEKTSADEDITSIQTFVAGLKEMAK-QETGTRADKLEKNVKDVGLDPM 769
Query: 770 HEALETPENWPVEFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLS 829
E T +WP+EFERQ+RE+ +LWQTCNVSL+HRTYFFLLFRGDP DSIYM VEL+RLS
Sbjct: 770 QEG--TLPDWPLEFERQQREIIELWQTCNVSLIHRTYFFLLFRGDPMDSIYMEVELRRLS 827
Query: 830 FLKESFSQGNMAMQDGRVLSLASSERALRRERETLSKLMRRRLSADERNKLYQKWGIGLN 889
FLKE+FSQGN +++DGR L+ ASS RALRRERETLSKLM +R S ERN+L+QKWGI L+
Sbjct: 828 FLKETFSQGNQSLEDGRTLTQASSIRALRRERETLSKLMHKRFSEGERNRLFQKWGIKLD 887
Query: 890 SKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPLTTPRRRS 949
SKRRRLQLA LWSN+ DM+ + ESAAI+AKLI+FVEQG ALK MFGLSFTP T RRRS
Sbjct: 888 SKRRRLQLAQRLWSNTTDMSHVNESAAIVAKLIKFVEQGQALKEMFGLSFTPHRT-RRRS 946
Query: 950 LGWKHSMASLL 960
GWKHSM SLL
Sbjct: 947 YGWKHSMGSLL 957
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147775817|emb|CAN75924.1| hypothetical protein VITISV_029516 [Vitis vinifera] gi|297744725|emb|CBI37987.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224105297|ref|XP_002313758.1| predicted protein [Populus trichocarpa] gi|222850166|gb|EEE87713.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449461619|ref|XP_004148539.1| PREDICTED: kinesin-like protein KIN12B-like [Cucumis sativus] gi|449520157|ref|XP_004167100.1| PREDICTED: kinesin-like protein KIN12B-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356544453|ref|XP_003540665.1| PREDICTED: uncharacterized protein LOC100820012 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356541062|ref|XP_003539002.1| PREDICTED: uncharacterized protein LOC100788096 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356509547|ref|XP_003523509.1| PREDICTED: uncharacterized protein LOC100799379 [Glycine max] | Back alignment and taxonomy information |
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| >gi|42569214|ref|NP_179726.2| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|79322634|ref|NP_001031385.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|330252063|gb|AEC07157.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|330252064|gb|AEC07158.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297824981|ref|XP_002880373.1| kinesin motor family protein [Arabidopsis lyrata subsp. lyrata] gi|297326212|gb|EFH56632.1| kinesin motor family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357473571|ref|XP_003607070.1| Kinesin-related protein [Medicago truncatula] gi|355508125|gb|AES89267.1| Kinesin-related protein [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 960 | ||||||
| TAIR|locus:2050115 | 862 | AT2G21300 [Arabidopsis thalian | 0.551 | 0.613 | 0.688 | 5.8e-255 | |
| TAIR|locus:2120272 | 836 | AT4G38950 [Arabidopsis thalian | 0.576 | 0.661 | 0.645 | 1.6e-241 | |
| TAIR|locus:2155051 | 1063 | AT5G66310 [Arabidopsis thalian | 0.570 | 0.515 | 0.547 | 1.3e-206 | |
| TAIR|locus:2135006 | 1004 | AT4G24170 [Arabidopsis thalian | 0.456 | 0.436 | 0.634 | 2.2e-176 | |
| TAIR|locus:2084701 | 938 | TES "TETRASPORE" [Arabidopsis | 0.414 | 0.424 | 0.580 | 2.6e-157 | |
| UNIPROTKB|Q8S950 | 959 | nack1 "Kinesin-like protein NA | 0.415 | 0.416 | 0.594 | 3.7e-156 | |
| TAIR|locus:2014069 | 974 | HIK "HINKEL" [Arabidopsis thal | 0.423 | 0.417 | 0.565 | 9.9e-156 | |
| TAIR|locus:2162351 | 1087 | AT5G42490 [Arabidopsis thalian | 0.282 | 0.249 | 0.643 | 2.2e-131 | |
| UNIPROTKB|O42263 | 2954 | cenpe "Kinesin-related protein | 0.458 | 0.148 | 0.380 | 1.2e-71 | |
| DICTYBASE|DDB_G0291039 | 685 | kif11 "kinesin-7" [Dictyosteli | 0.375 | 0.525 | 0.406 | 2.6e-69 |
| TAIR|locus:2050115 AT2G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1821 (646.1 bits), Expect = 5.8e-255, Sum P(2) = 5.8e-255
Identities = 372/540 (68%), Positives = 430/540 (79%)
Query: 1 MGAVGAEELMKMEKMQAPSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNT 60
MGA+ EEL KMEK Q AREEKILVLVRLRPL+EKEI A+EA DWECINDTT+LYRNT
Sbjct: 1 MGAIAGEELKKMEKTQVHVAREEKILVLVRLRPLNEKEILANEAADWECINDTTVLYRNT 60
Query: 61 LREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120
LREGSTFPSAY+FDRV+ G+C T QVYEDG KE+ALSVV GINSSIFAYGQTSSGKTYTM
Sbjct: 61 LREGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGINSSIFAYGQTSSGKTYTM 120
Query: 121 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 180
+GITE VADIFDYI +HE+RAFV+KFSA+EIYNEAIRDLLS D+TPLRL DDP
Sbjct: 121 SGITEFAVADIFDYIFKHEDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKGAAV 180
Query: 181 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240
L+DWNHLKEL+S+CEAQR+IGET LNE+SSRSHQII+L +ESSAREFLGKENS
Sbjct: 181 EKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENS 240
Query: 241 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 300
TTL ASVNF+DLAGSERASQALS GARLKEGCHINRSLLTL TVIRKLS GR GHINYRD
Sbjct: 241 TTLMASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYRD 300
Query: 301 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKA 360
SKLTR+LQPCLGGNARTAI+CTLSPARSHVEQTRNTLLFACCAKEVTTKAQ+NVVMSDKA
Sbjct: 301 SKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQINVVMSDKA 360
Query: 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRV 420
LVK LQ+ELARLESELR+PAPA+S+CD LRKKDLQIQKME+++ E+TKQRD+AQSR+
Sbjct: 361 LVKQLQRELARLESELRNPAPATSSCDCGVTLRKKDLQIQKMEKQLAEMTKQRDIAQSRL 420
Query: 421 EDLLRMVGCDQDSRQETGRNHNSHKQVSDIWEDEYSESEASGVADLHR---MKNGVKKS- 476
ED ++MV + D+ + G H ++ ++ WED S SE SGV D R + +G
Sbjct: 421 EDFMKMV--EHDASSKAGTPHFRNR--TNKWEDG-SVSEISGVVDPDRTSFISDGTSTPL 475
Query: 477 NTTRFY-DTESENNSEYLYHPENNEDPTLSDCTSSPLPIGKKVVRSYSGKSLEENAGATT 535
+T R + + S+++ E P ++ D + C ++ R + S EE A T
Sbjct: 476 STARAHVRSHSDDDLEEEMSPRHSGDQSEEYCKEVQCIEMEESTRDINNDS-EERTDAET 534
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| TAIR|locus:2120272 AT4G38950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155051 AT5G66310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2135006 AT4G24170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2084701 TES "TETRASPORE" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8S950 nack1 "Kinesin-like protein NACK1" [Nicotiana tabacum (taxid:4097)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014069 HIK "HINKEL" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2162351 AT5G42490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O42263 cenpe "Kinesin-related protein" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0291039 kif11 "kinesin-7" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_IX0407 | hypothetical protein (946 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 960 | |||
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 1e-156 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-120 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-117 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 4e-98 | |
| pfam11995 | 162 | pfam11995, DUF3490, Domain of unknown function (DU | 4e-86 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 2e-85 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 9e-81 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 9e-80 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 3e-78 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 5e-78 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 5e-75 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 1e-71 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 2e-70 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 8e-65 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 3e-63 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 3e-59 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 9e-55 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 2e-52 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 8e-51 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 2e-27 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 5e-06 |
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
Score = 462 bits (1192), Expect = e-156
Identities = 176/330 (53%), Positives = 217/330 (65%), Gaps = 16/330 (4%)
Query: 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCST 83
KI V VR+RPL+ +E +E W ND TI E ST ++TFDRVF G+ +
Sbjct: 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISL-----EESTPGQSFTFDRVFGGESTN 54
Query: 84 TQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHR 137
+VYE AK + S + G N +IFAYGQTSSGKT+TM+ GI V DIF I
Sbjct: 55 REVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQD 114
Query: 138 HEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKEL 197
+R F+L+ S +EIYNE I+DLLS LR+ +DP KGVVV +TEEI+ HL +L
Sbjct: 115 TPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQL 174
Query: 198 LSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSER 257
++ E R +GET NE+SSRSH I +L IES R E+ T +++N +DLAGSER
Sbjct: 175 IARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS--ESGTVRVSTLNLIDLAGSER 232
Query: 258 ASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN-GHINYRDSKLTRMLQPCLGGNAR 316
ASQ G R KEG IN+SLLTL TVI KLS+G+N GHI YRDSKLTR+LQP L GNAR
Sbjct: 233 ASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNAR 291
Query: 317 TAIICTLSPARSHVEQTRNTLLFACCAKEV 346
TAIICT+SPA SHVE+T NTL FA AK+V
Sbjct: 292 TAIICTISPASSHVEETLNTLKFASRAKKV 321
|
This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|221365 pfam11995, DUF3490, Domain of unknown function (DUF3490) | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 960 | |||
| PF11995 | 161 | DUF3490: Domain of unknown function (DUF3490); Int | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 97.7 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 94.72 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.51 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.43 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 91.32 | |
| PRK06620 | 214 | hypothetical protein; Validated | 89.21 | |
| PRK12377 | 248 | putative replication protein; Provisional | 88.84 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 88.67 | |
| PRK08116 | 268 | hypothetical protein; Validated | 87.24 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 86.7 | |
| PRK09087 | 226 | hypothetical protein; Validated | 86.57 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 86.55 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 86.27 | |
| PRK06526 | 254 | transposase; Provisional | 86.15 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 86.13 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 85.45 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 84.82 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 84.81 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 83.83 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 83.42 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 83.33 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 82.24 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 81.71 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 80.76 | |
| PRK08727 | 233 | hypothetical protein; Validated | 80.62 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 80.62 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 80.01 |
| >PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=661.76 Aligned_cols=161 Identities=66% Similarity=1.107 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhhhcccceeeeheeeeeecCCCCCceeEEeeehhhhhHHHHhhcCCCccCCCccccHHHHHHHHHHHH
Q 002140 782 EFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRER 861 (960)
Q Consensus 782 ~f~~~~~~iieLW~~C~vslvHRtyFfllfkGd~~D~iYmevElrrL~~l~~~~~~~~~~~~~~~~~~~~ss~~~l~~er 861 (960)
+||+||++||||||+|||||||||||||||||||+|+||||||||||+|||+||++++++++|++++|++||+|||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER 80 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER 80 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhCCCCCcccchhhhhhhccCCcccchhHHHHHHHHHHHhhhccccccccccccccccC
Q 002140 862 ETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTP 941 (960)
Q Consensus 862 ~~l~~~~~~~l~~~ere~ly~kw~i~l~~k~r~lql~~~lw~~~~d~~hv~esa~~vaklv~~~~~~~~~kemf~l~f~~ 941 (960)
+||||||++|||.+|||+||.||||||+||||||||||+|||||+||+||+|||+||||||||||||+|+||||||||+|
T Consensus 81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~ 160 (161)
T PF11995_consen 81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP 160 (161)
T ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 002140 942 L 942 (960)
Q Consensus 942 ~ 942 (960)
|
T Consensus 161 ~ 161 (161)
T PF11995_consen 161 P 161 (161)
T ss_pred C
Confidence 6
|
This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA. |
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 960 | ||||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-62 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 6e-55 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 2e-48 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 3e-48 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 6e-48 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 7e-48 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 2e-47 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 1e-45 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 3e-44 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 4e-44 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 6e-44 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 4e-43 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 5e-43 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 5e-43 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 2e-42 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 3e-42 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 1e-41 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 1e-41 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 3e-41 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 3e-41 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 4e-41 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 4e-41 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 4e-41 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 4e-41 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 5e-41 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 3e-39 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 3e-39 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-38 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 8e-38 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 1e-37 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 3e-37 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 8e-36 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 1e-35 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 1e-35 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 6e-35 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 7e-35 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 8e-34 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 3e-33 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 9e-33 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 1e-32 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 1e-32 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 5e-31 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 5e-31 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 2e-30 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-30 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-30 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-30 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-30 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 1e-29 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 2e-29 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 3e-28 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 6e-28 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 7e-28 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 1e-25 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 5e-23 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 1e-22 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 1e-11 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 4e-11 |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
|
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 476 bits (1227), Expect = e-161
Identities = 148/356 (41%), Positives = 204/356 (57%), Gaps = 17/356 (4%)
Query: 20 AREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWG 79
A E + V VR+RPL+ +E + E D ++Y+ ++ FDRVF G
Sbjct: 1 AEEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDG------SKSFNFDRVFHG 54
Query: 80 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC------TVADIFD 133
+ +T VYE+ A I S + G N +IFAYGQT+SGKTYTM G + + DIF
Sbjct: 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQ 114
Query: 134 YIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPEKGVVVEKVTEEILKDW 191
I + +R F+L+ S MEIYNE I DLL + PL + +D + V V +TEE++
Sbjct: 115 KIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTS 174
Query: 192 NHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251
+ ++ E R GET +N++SSRSH I R+++ES + + + +N VD
Sbjct: 175 EMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234
Query: 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG-HINYRDSKLTRMLQPC 310
LAGSERA+Q + G RLKEGC+INRSL L VI+KLS G+ G INYRDSKLTR+LQ
Sbjct: 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNS 294
Query: 311 LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQ 366
LGGNA+T IICT++P ++T L FA AK + VN V +D+ H
Sbjct: 295 LGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHH 348
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 960 | |||
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.96 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.95 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.87 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 92.79 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 91.24 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 88.99 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 81.74 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 81.64 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 80.51 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 80.13 |
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-86 Score=739.11 Aligned_cols=341 Identities=38% Similarity=0.518 Sum_probs=291.0
Q ss_pred CCCCCceEEEEecCCCCchhhhcCCCcceEEeC---CcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHH
Q 002140 19 SAREEKILVLVRLRPLSEKEITADEATDWECIN---DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (960)
Q Consensus 19 ~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~---~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV 95 (960)
.+..++|+|+|||||+++.|...+....+.+.+ ..++.+. .+.|+||+||+++++|++||+.+++|+|
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~---------~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 77 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA---------GKVYLFDKVFKPNASQEKVYNEAAKSIV 77 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC---------CEEEeCceEecCCCCHHHHHHHhhhhHH
Confidence 356789999999999999998877766666554 2344431 3589999999999999999999999999
Q ss_pred HHHhCCCCEEEEEeccCCCCCccccC---------CCchhhHHHHHHHHHhc-cccceEEEeeeeeeecchhccccCCCC
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRH-EERAFVLKFSAMEIYNEAIRDLLSTDN 165 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM~---------GIi~ral~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLL~~~~ 165 (960)
+++++|||+||||||||||||||||. ||+|+++++||+.+... .+..|.|++||+|||||+|+|||++..
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 157 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK 157 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC
T ss_pred HHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc
Confidence 99999999999999999999999995 68999999999999764 356899999999999999999999988
Q ss_pred CCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEE
Q 002140 166 TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSA 245 (960)
Q Consensus 166 ~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~S 245 (960)
.++.+++++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++... .......|
T Consensus 158 ~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~s 232 (365)
T 2y65_A 158 VNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENL-----ENQKKLSG 232 (365)
T ss_dssp CSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEET-----TTCCEEEE
T ss_pred CCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEec-----CCCCEeEE
Confidence 8999999999999999999999999999999999999999999999999999999999999987543 23345789
Q ss_pred EEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCC
Q 002140 246 SVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 325 (960)
Q Consensus 246 kL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISP 325 (960)
+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.++..||||||||||+||||+|||||+|+|||||||
T Consensus 233 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP 312 (365)
T 2y65_A 233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSP 312 (365)
T ss_dssp EEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECC
T ss_pred EEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecC
Confidence 99999999999999999999999999999999999999999999887789999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHH
Q 002140 326 ARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLE 373 (960)
Q Consensus 326 s~~~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le 373 (960)
+..+++||++||+||+|||.|+|+|.+|+.++.+.++++|++|+.+|+
T Consensus 313 ~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 313 ASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp BGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred ccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999889998988887765
|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 960 | ||||
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 2e-75 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 5e-70 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 1e-67 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 1e-66 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 8e-66 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 1e-64 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 3e-63 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-61 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 2e-54 |
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Neurospora crassa [TaxId: 5141]
Score = 249 bits (636), Expect = 2e-75
Identities = 117/368 (31%), Positives = 184/368 (50%), Gaps = 25/368 (6%)
Query: 19 SAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFW 78
S+ I V+ R RP + EI + T + +GS +TFDRVF
Sbjct: 1 SSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGS-----FTFDRVFD 55
Query: 79 GDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH 138
C + +++ K +++G N ++FAYGQT +GK+YTM G +
Sbjct: 56 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIV 115
Query: 139 EE-----------RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEI 187
E+ + ++ S MEIY E IRDLL+ N L + ++ +GV V+ + E
Sbjct: 116 EQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIY 175
Query: 188 LKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASV 247
+ + E++ R + T +N++SSRSH I + I E + S +
Sbjct: 176 VSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQK-----NVETGSAKSGQL 230
Query: 248 NFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRML 307
VDLAGSE+ + ++G L+E IN+SL L VI L+ G++ H+ YRDSKLTR+L
Sbjct: 231 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRIL 290
Query: 308 QPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQK 367
Q LGGN+RT +I SP+ + +T +TL F AK + KA+VN +S L++
Sbjct: 291 QESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE----LKQ 346
Query: 368 ELARLESE 375
LA+ +++
Sbjct: 347 MLAKAKTQ 354
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 960 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.69 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.79 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 86.75 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 85.19 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 83.72 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.25 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 80.84 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 80.45 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=6.1e-78 Score=671.19 Aligned_cols=339 Identities=37% Similarity=0.547 Sum_probs=296.5
Q ss_pred ceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHHHhCCCC
Q 002140 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN 103 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N 103 (960)
+|+|+|||||+.+.|...+....+.+.++.++...... ..++.|+||+||+++++|++||+. +.|+|+++++|||
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~----~~~~~f~FD~vf~~~~~q~~vy~~-v~~lv~~~l~G~n 75 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD----DKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYN 75 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSS----SSEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCE
T ss_pred CeEEEEEcCCCChhhcccCCCCeEEeCCCCeEEecCCC----CCceEEECCeecCCCCCHHHHHHH-HHHHHHHHhcCCc
Confidence 69999999999999998888888888888887664432 235799999999999999999987 5899999999999
Q ss_pred EEEEEeccCCCCCccccC------CCchhhHHHHHHHHHhcc-ccceEEEeeeeeeecchhccccCCCC---CCceeeeC
Q 002140 104 SSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDN---TPLRLLDD 173 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLL~~~~---~~L~I~ed 173 (960)
+||||||||||||||||+ ||+|+++.+||..+.... ...|.|++||+|||||+|+|||.+.. ..+.++++
T Consensus 76 ~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~ 155 (364)
T d1sdma_ 76 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 155 (364)
T ss_dssp EEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEEC
T ss_pred eeeeccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeec
Confidence 999999999999999997 599999999999998755 46899999999999999999998755 36789999
Q ss_pred CCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEcC
Q 002140 174 PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLA 253 (960)
Q Consensus 174 ~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~fVDLA 253 (960)
+.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+++|++... .......++|+|||||
T Consensus 156 ~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~-----~~~~~~~~kl~~vDLA 230 (364)
T d1sdma_ 156 SKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL-----QTQAIARGKLSFVDLA 230 (364)
T ss_dssp TTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEET-----TTCCEEEEEEEEEECC
T ss_pred ccCccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEecc-----CcceeeeEEEEeechh
Confidence 99999999999999999999999999999999999999999999999999999987543 2344678999999999
Q ss_pred CCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcchHHHH
Q 002140 254 GSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQT 333 (960)
Q Consensus 254 GSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eET 333 (960)
||||..++++.|.+++|+.+||+||++|++||.+|+++. .|||||+||||+||+|+|||||+|+|||||||+..+++||
T Consensus 231 GsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~-~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eT 309 (364)
T d1sdma_ 231 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDET 309 (364)
T ss_dssp CCSCCCC---------CCCTTCHHHHHHHHHHHHHHHTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHH
T ss_pred hccccccccccCceeeeccccccchhhHHHHHHHHHcCC-CcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHH
Confidence 999999999999999999999999999999999999864 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHh
Q 002140 334 RNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESEL 376 (960)
Q Consensus 334 lsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL 376 (960)
++||+||++||+|+|+|.+|+... .+.+|+++++.|++++
T Consensus 310 l~TL~fa~~ak~i~n~p~~n~~~~---~~~~l~~~i~~l~~~~ 349 (364)
T d1sdma_ 310 HNSLTYASRVRSIVNDPSKNVSSK---EVARLKKLVSYWKEQA 349 (364)
T ss_dssp HHHHHHHHHHTTCCCCCCCCEECH---HHHHHHTTTTCC----
T ss_pred HHHHHHHHHHhhcccCCcccCCHH---HHHHHHHHHHHHHHHH
Confidence 999999999999999999998753 3566777766666655
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
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| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|