Citrus Sinensis ID: 002170
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 957 | 2.2.26 [Sep-21-2011] | |||||||
| P34098 | 1010 | Lysosomal alpha-mannosida | yes | no | 0.936 | 0.887 | 0.385 | 0.0 | |
| Q8VHC8 | 1007 | Lysosomal alpha-mannosida | yes | no | 0.918 | 0.872 | 0.396 | 1e-179 | |
| O00754 | 1011 | Lysosomal alpha-mannosida | yes | no | 0.928 | 0.879 | 0.394 | 1e-177 | |
| Q60HE9 | 1012 | Lysosomal alpha-mannosida | N/A | no | 0.928 | 0.878 | 0.392 | 1e-177 | |
| O09159 | 1013 | Lysosomal alpha-mannosida | yes | no | 0.931 | 0.879 | 0.388 | 1e-177 | |
| O46432 | 1007 | Lysosomal alpha-mannosida | N/A | no | 0.925 | 0.879 | 0.394 | 1e-177 | |
| Q29451 | 999 | Lysosomal alpha-mannosida | yes | no | 0.917 | 0.878 | 0.388 | 1e-174 | |
| O54782 | 1018 | Epididymis-specific alpha | no | no | 0.911 | 0.856 | 0.269 | 3e-77 | |
| P27046 | 1150 | Alpha-mannosidase 2 OS=Mu | no | no | 0.745 | 0.62 | 0.278 | 2e-75 | |
| Q16706 | 1144 | Alpha-mannosidase 2 OS=Ho | no | no | 0.749 | 0.626 | 0.280 | 4e-75 |
| >sp|P34098|MANA_DICDI Lysosomal alpha-mannosidase OS=Dictyostelium discoideum GN=manA PE=1 SV=2 | Back alignment and function desciption |
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Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/975 (38%), Positives = 539/975 (55%), Gaps = 79/975 (8%)
Query: 15 ACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGG 74
A VQ LD+ I L+A+ RKFIYVE AFFQRWW +QS +QN+VK LV SGQLE INGG
Sbjct: 74 AGVQYTLDTAITCLLANPERKFIYVEIAFFQRWWDEQSTTMQNIVKGLVESGQLEFINGG 133
Query: 75 MCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDF 134
CM+DEA +Y D IDQ TLGH+++ E F V P+IGW IDPFGHSA QA + ++GFD
Sbjct: 134 YCMNDEATTYYDDTIDQMTLGHQFLWENFGVMPKIGWHIDPFGHSATQARIF-GQLGFDA 192
Query: 135 LFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYFEVGDTS 194
R+DYQD R+ K +E +WR+++S + Q+ T + Y P D F FE GD
Sbjct: 193 FIIGRMDYQDIEARLENKQMEFMWRSTQSTPEN-QVFTSVLRAMYCTP-DGFNFEQGD-D 249
Query: 195 PIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKF 254
PI QDD NLFD NV R F A+ A RTN+++ G DF Y A +++ +DK
Sbjct: 250 PI-QDDPNLFDNNVDSRAEQFTQVALEYATHYRTNNVLIPFGCDFAYLNAQMYYKNIDKL 308
Query: 255 IHYVNQDGR---VNALYSTPSMYIDAKYAANESWPLKTDDFFPYADRENAYWTGYFTSRP 311
I ++N + +N LYSTPS+YIDA AN W +KTDD FPYAD E +YWTGYF SRP
Sbjct: 309 IAHINSNPDKYGLNLLYSTPSIYIDAVNDANLVWEVKTDDLFPYADNEFSYWTGYFVSRP 368
Query: 312 ALKGYVRTMSAYYLAARQLEFFKGRNEVGLSTDSLAD-------ALALVQHHDAVSGTEK 364
ALKGYVR +A Q+ ++ L D + + QHHDAVSGTE+
Sbjct: 369 ALKGYVRQNNALLHVVEQMLVTSSNLMPSSRSEQLVDDIVIMREVMGIAQHHDAVSGTEQ 428
Query: 365 QHVADDYAKRLSIGYT---EAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPP 421
QHVADDYA+RLSIG E V +L SK+ P +F CPLLN S CP
Sbjct: 429 QHVADDYAERLSIGNCASLETINTVVGTLLTANGNSKSAAATPTISF--CPLLNQSICPA 486
Query: 422 SEVDLSSGKSLVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSL 481
++ LSSG S+ V++YN L W R + +RIP+ NVTV S I SQ+
Sbjct: 487 TD-PLSSGTSVPVLIYNSLSWTRNEPVRIPIPIANVTVTSSSNGSITSQV---------- 535
Query: 482 RNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYII-SSAKQAASHSGMRTV------- 533
+ ++ L F A++PPLG++TYII S+A + + +
Sbjct: 536 ------------NQINGTFILEFLATIPPLGYSTYIITSTASDFVEPNSIPAIIIQDEII 583
Query: 534 ------YKSQIRQNDTIEVGPGNLKLLYSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDD 587
++ ND I + + + +S + ++ N + V + Q YI+Y
Sbjct: 584 VSGGGKINEKVSYNDPIILENDYINVQFSSQDGSILSITNKTSGVTSSITQEYIWYNPSV 643
Query: 588 GSKD-LQPSGAYIFRP--NGTYPIEPEGQLSFTILRGPLLDEVHQRINPWIYQVTRVYKG 644
G+ D Q SGAYIFRP + YP S +I+RG + + + + + Q R+Y
Sbjct: 644 GNDDSAQCSGAYIFRPVEDFAYPYN-NATPSVSIIRGEISSSIRRFWSNEMVQTFRLYSN 702
Query: 645 KDHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLE 704
DH E+E +GPI I DGIGKE+V++ T+ +++++T+Y+DS G + +RI +YR WNL
Sbjct: 703 ADHLEVEEIIGPIDISDGIGKEIVSRYTTTLVTDQTWYSDSQGMEMQKRITNYRPSWNLT 762
Query: 705 VNQPIAGNYYPVNLGIYMKD--NSSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRG 762
V QP +GNY PVN Y++D S + +I+ DRS G +S+ DGQL++M+HRR + DD RG
Sbjct: 763 VVQPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCASLRDGQLDMMMHRRTLKDDGRG 822
Query: 763 VSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAAKWRRSFGQEIYSPFLLAF--TEQDG 820
V + +NE+ + + + D A R + P L F T+Q
Sbjct: 823 VGQPMNESTQI--------VTTSKLIFHDISSYAQSHYRPAALSLSHPLLPMFTTTQQSS 874
Query: 821 DHWANSHLATYSAMDTTYVLPDNVALITLQELDS--GKILLRLAHLYEIE-EDTDLSVMS 877
+ W + + YS + + LP+ + + TLQ LD+ ILLR+ ++Y+I+ +D+
Sbjct: 875 NDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQDPQTI 934
Query: 878 SVELKKVFPKKKISKVTEMNLSANQERAVMEKKRLVWR-VEGSSKEQPTAVRGSPVDPAK 936
+++L +F I+ TEMNL+ Q+ + + RL W+ V+G + + ++
Sbjct: 935 TLDLSTIFSTITITSATEMNLTGVQKLSNL--SRLKWKTVDGKNYDHKSSSSTKEDSSNG 992
Query: 937 LVVELAPMEIRTFVI 951
V +PM+IRTF+I
Sbjct: 993 FVFTFSPMQIRTFII 1007
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Dictyostelium discoideum (taxid: 44689) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 4 |
| >sp|Q8VHC8|MA2B1_CAVPO Lysosomal alpha-mannosidase OS=Cavia porcellus GN=MAN2B1 PE=1 SV=1 | Back alignment and function description |
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| >sp|O00754|MA2B1_HUMAN Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q60HE9|MA2B1_MACFA Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1 | Back alignment and function description |
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| >sp|O09159|MA2B1_MOUSE Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1 PE=2 SV=4 | Back alignment and function description |
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| >sp|O46432|MA2B1_FELCA Lysosomal alpha-mannosidase OS=Felis catus GN=MAN2B1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q29451|MA2B1_BOVIN Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3 | Back alignment and function description |
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| >sp|O54782|MA2B2_MOUSE Epididymis-specific alpha-mannosidase OS=Mus musculus GN=Man2b2 PE=2 SV=2 | Back alignment and function description |
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| >sp|P27046|MA2A1_MOUSE Alpha-mannosidase 2 OS=Mus musculus GN=Man2a1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q16706|MA2A1_HUMAN Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 957 | ||||||
| 255540059 | 1012 | lysosomal alpha-mannosidase, putative [R | 0.981 | 0.927 | 0.778 | 0.0 | |
| 224122176 | 1012 | predicted protein [Populus trichocarpa] | 0.977 | 0.923 | 0.776 | 0.0 | |
| 359491464 | 1016 | PREDICTED: lysosomal alpha-mannosidase [ | 0.980 | 0.923 | 0.760 | 0.0 | |
| 356508869 | 1011 | PREDICTED: lysosomal alpha-mannosidase-l | 0.975 | 0.923 | 0.744 | 0.0 | |
| 225456481 | 1009 | PREDICTED: lysosomal alpha-mannosidase [ | 0.975 | 0.925 | 0.739 | 0.0 | |
| 297734249 | 1048 | unnamed protein product [Vitis vinifera] | 0.977 | 0.892 | 0.744 | 0.0 | |
| 440546588 | 1024 | alpha-mannosidase [Prunus persica] | 0.980 | 0.916 | 0.735 | 0.0 | |
| 359488553 | 1025 | PREDICTED: lysosomal alpha-mannosidase-l | 0.983 | 0.918 | 0.738 | 0.0 | |
| 356516487 | 1012 | PREDICTED: lysosomal alpha-mannosidase-l | 0.977 | 0.923 | 0.731 | 0.0 | |
| 350538359 | 1028 | alpha-mannosidase precursor [Solanum lyc | 0.980 | 0.912 | 0.723 | 0.0 |
| >gi|255540059|ref|XP_002511094.1| lysosomal alpha-mannosidase, putative [Ricinus communis] gi|223550209|gb|EEF51696.1| lysosomal alpha-mannosidase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1584 bits (4101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 735/944 (77%), Positives = 837/944 (88%), Gaps = 5/944 (0%)
Query: 15 ACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGG 74
ACVQN+LDSL+PAL+ADKNRKFIYVEQAFFQRWW +QSEEVQ +VK+LV+SGQLELINGG
Sbjct: 69 ACVQNILDSLVPALLADKNRKFIYVEQAFFQRWWNEQSEEVQKIVKKLVSSGQLELINGG 128
Query: 75 MCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDF 134
MCMHDEAA HYIDMIDQTTLGH++IK++FN+TPRIGWQIDPFGHSAVQ YLL AEVGFD
Sbjct: 129 MCMHDEAATHYIDMIDQTTLGHKFIKQEFNLTPRIGWQIDPFGHSAVQGYLLGAEVGFDS 188
Query: 135 LFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYFEVGDTS 194
+FFARIDYQDR+KR +EK+LEVVWR SKSLGSSAQI G PKNYEPPSDNFYFEV D S
Sbjct: 189 IFFARIDYQDRSKRKDEKSLEVVWRGSKSLGSSAQIFAGAFPKNYEPPSDNFYFEVNDES 248
Query: 195 PIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKF 254
PIVQDD+NLFDYNVP+RVNDFVSAA++QANITRTNHIMWTMGTDFKYQYAH+WF+QMDKF
Sbjct: 249 PIVQDDINLFDYNVPDRVNDFVSAAMSQANITRTNHIMWTMGTDFKYQYAHSWFKQMDKF 308
Query: 255 IHYVNQDGRVNALYSTPSMYIDAKYAANESWPLKTDDFFPYADRENAYWTGYFTSRPALK 314
IHYVNQDGRVNA YSTPS+Y DAKYAANESWPLKTDD+FPYAD NAYWTGYFTSRPA+K
Sbjct: 309 IHYVNQDGRVNAFYSTPSIYTDAKYAANESWPLKTDDYFPYADDVNAYWTGYFTSRPAIK 368
Query: 315 GYVRTMSAYYLAARQLEFFKGRNEVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKR 374
GYVRT+S YYLAARQLEF KGR++ G +TDSLA+ALA+ QHHDAV+GTEKQHVADDYAKR
Sbjct: 369 GYVRTISGYYLAARQLEFLKGRSKAGSNTDSLANALAVAQHHDAVTGTEKQHVADDYAKR 428
Query: 375 LSIGYTEAEKVVAASLACLTEFS-KNGCVNPITNFQQCPLLNISYCPPSEVDLSSGKSLV 433
LSIGY EAEKVV SL+C+ E + C N FQQCPLLNISYCP SEVDLS+GKSLV
Sbjct: 429 LSIGYKEAEKVVGESLSCIAESKLETDCTNTTNKFQQCPLLNISYCPASEVDLSNGKSLV 488
Query: 434 VVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKS 493
VVVYN LGWKRE++IR+PVINENV VKDS+G IESQLLPLL S+S+RN +S AYLG S
Sbjct: 489 VVVYNSLGWKRENVIRVPVINENVNVKDSEGNEIESQLLPLLDASISVRNYHSMAYLGSS 548
Query: 494 TNVTPSYWLAFSASVPPLGFNTYIISS----AKQAASHSGMRTVYKSQIRQNDTIEVGPG 549
NVTP YWLAFS SVPPLGF+TYII+S AK+ A+ S +TV+K++ Q TIE+GPG
Sbjct: 549 PNVTPKYWLAFSVSVPPLGFSTYIIASAPPTAKRTAAFSEAQTVHKTRATQYGTIEIGPG 608
Query: 550 NLKLLYSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQPSGAYIFRPNGTYPIE 609
NLKL+YSGK K+ +YIN +TSV K +EQSY YY GDDGSKDLQ SGAYIFRPNGTYPI
Sbjct: 609 NLKLIYSGKDGKIAQYINRRTSVKKSVEQSYSYYAGDDGSKDLQASGAYIFRPNGTYPIN 668
Query: 610 PEGQLSFTILRGPLLDEVHQRINPWIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVT 669
+GQ++FT+LRGPLLDE+H RIN WIYQ+TRVYKGK+HAE+EFTVGPIPIDDGIGKEVVT
Sbjct: 669 SKGQVAFTVLRGPLLDEIHHRINSWIYQITRVYKGKEHAEVEFTVGPIPIDDGIGKEVVT 728
Query: 670 QITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSEL 729
+IT+ + +NKTFYTDSSGRDF+ERIRDYRKDW+L+VNQP+AGNYYP+NLGIYMKDNSSEL
Sbjct: 729 KITTTLKNNKTFYTDSSGRDFLERIRDYRKDWDLQVNQPVAGNYYPINLGIYMKDNSSEL 788
Query: 730 SILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLR 789
SILVDRSVGGSSI DGQLELMLHRRLV DD+RGV EALNETVCV DKC GLTI+GKYYLR
Sbjct: 789 SILVDRSVGGSSIVDGQLELMLHRRLVIDDSRGVGEALNETVCVLDKCTGLTIVGKYYLR 848
Query: 790 IDPVGEAAKWRRSFGQEIYSPFLLAFTEQDGDHWANSHLATYSAMDTTYVLPDNVALITL 849
IDP+ E AKWRRS+GQEIYSPFLLAF EQD + W SH+ T+SAM ++YVLPDNVA++TL
Sbjct: 849 IDPLSEGAKWRRSYGQEIYSPFLLAFAEQDRESWTKSHVTTFSAMGSSYVLPDNVAILTL 908
Query: 850 QELDSGKILLRLAHLYEIEEDTDLSVMSSVELKKVFPKKKISKVTEMNLSANQERAVMEK 909
QELD+GK L+R AHLYEI ED D+S+M+SVELKKVFP KKI+KVTE +L+ANQERA M++
Sbjct: 909 QELDNGKTLIRFAHLYEIGEDEDMSIMASVELKKVFPSKKINKVTETSLTANQERAEMDR 968
Query: 910 KRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFVIEF 953
KRLVW EG S ++ RG+P+DP KLVVELAPMEIRTF+++F
Sbjct: 969 KRLVWNAEGFSGDENKVARGAPIDPVKLVVELAPMEIRTFLVDF 1012
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122176|ref|XP_002318770.1| predicted protein [Populus trichocarpa] gi|222859443|gb|EEE96990.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359491464|ref|XP_002277164.2| PREDICTED: lysosomal alpha-mannosidase [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356508869|ref|XP_003523176.1| PREDICTED: lysosomal alpha-mannosidase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225456481|ref|XP_002280858.1| PREDICTED: lysosomal alpha-mannosidase [Vitis vinifera] gi|297734505|emb|CBI15752.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297734249|emb|CBI15496.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|440546588|gb|AGC10269.1| alpha-mannosidase [Prunus persica] | Back alignment and taxonomy information |
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| >gi|359488553|ref|XP_002276092.2| PREDICTED: lysosomal alpha-mannosidase-like [Vitis vinifera] gi|296082271|emb|CBI21276.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356516487|ref|XP_003526925.1| PREDICTED: lysosomal alpha-mannosidase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|350538359|ref|NP_001234851.1| alpha-mannosidase precursor [Solanum lycopersicum] gi|301176645|gb|ADK66339.1| alpha-mannosidase [Solanum lycopersicum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 957 | ||||||
| TAIR|locus:2159143 | 1024 | AT5G13980 [Arabidopsis thalian | 0.975 | 0.912 | 0.667 | 0.0 | |
| TAIR|locus:2090817 | 1019 | AT3G26720 [Arabidopsis thalian | 0.973 | 0.914 | 0.643 | 0.0 | |
| TAIR|locus:2156857 | 1047 | AT5G66150 [Arabidopsis thalian | 0.617 | 0.564 | 0.565 | 7.6e-293 | |
| MGI|MGI:107286 | 1013 | Man2b1 "mannosidase 2, alpha B | 0.463 | 0.438 | 0.427 | 1.9e-166 | |
| UNIPROTKB|G5E928 | 1010 | MAN2B1 "Mannosidase, alpha, cl | 0.463 | 0.439 | 0.434 | 9.3e-165 | |
| UNIPROTKB|O00754 | 1011 | MAN2B1 "Lysosomal alpha-mannos | 0.463 | 0.439 | 0.436 | 1.9e-164 | |
| UNIPROTKB|F1PKB2 | 1007 | MAN2B1 "Uncharacterized protei | 0.485 | 0.461 | 0.428 | 6.5e-164 | |
| RGD|3039 | 1009 | Man2b1 "mannosidase, alpha, cl | 0.463 | 0.440 | 0.425 | 2.2e-163 | |
| DICTYBASE|DDB_G0292206 | 1010 | manA "alpha-mannosidase" [Dict | 0.950 | 0.900 | 0.391 | 7.3e-162 | |
| UNIPROTKB|F1MMX7 | 999 | MAN2B1 "Lysosomal alpha-mannos | 0.471 | 0.451 | 0.434 | 4.7e-159 |
| TAIR|locus:2159143 AT5G13980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3357 (1186.8 bits), Expect = 0., P = 0.
Identities = 631/945 (66%), Positives = 750/945 (79%)
Query: 14 VACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELING 73
VACVQNVLDS++PAL+ADKNRKFIYVEQAFFQRWW +QSEE++ +VK+L++SGQLELING
Sbjct: 68 VACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWWNEQSEEIKRIVKELIHSGQLELING 127
Query: 74 GMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFD 133
GMCMHDEAAPHYIDMIDQTTLGHR+I +FNVTPRIGWQIDPFGHSAVQAYLL AEVGFD
Sbjct: 128 GMCMHDEAAPHYIDMIDQTTLGHRFIIREFNVTPRIGWQIDPFGHSAVQAYLLGAEVGFD 187
Query: 134 FLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYFEVGDT 193
+FF RIDYQDR KR EKTLEV+WR SKSLGSS+QI G P NYEPP FY+E+ D
Sbjct: 188 SVFFGRIDYQDREKRYKEKTLEVIWRGSKSLGSSSQIFAGAFPTNYEPPPGGFYYEITDD 247
Query: 194 SPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMDK 253
SP+VQDD +LFDYNV ERVN FV+AA+ QANITR NHIM+TMGTDF+YQYAHTW+RQMDK
Sbjct: 248 SPVVQDDPDLFDYNVQERVNAFVAAALDQANITRINHIMFTMGTDFRYQYAHTWYRQMDK 307
Query: 254 FIHYVNQDGRVNALYSTPSMYIDAKYAANESWPLKTDDFFPYADRENAYWTGYFTSRPAL 313
IHYVN DGRVNA YSTPS+Y DAK+AANE+WPLKT+D+FPYADR NAYWTGYFTSRPAL
Sbjct: 308 LIHYVNLDGRVNAFYSTPSIYTDAKHAANEAWPLKTEDYFPYADRINAYWTGYFTSRPAL 367
Query: 314 KGYVRTMSAYYLAARQLEFFKGRNEVGXXXXXXXXXXXXVQHHDAVSGTEKQHVADDYAK 373
K YVR MSAYYLAARQLEFFKGR++ G QHHDAVSGT KQHVA+DYAK
Sbjct: 368 KRYVRVMSAYYLAARQLEFFKGRSQKGPNTDSLADALAIAQHHDAVSGTSKQHVANDYAK 427
Query: 374 RLSIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSSGKSLV 433
RL+IGY EAE VVA SLA LT+ +NP FQQC LLNISYCP SEV+LS GKSL+
Sbjct: 428 RLAIGYVEAESVVATSLAHLTKVDPT--LNP--TFQQCLLLNISYCPSSEVNLSDGKSLI 483
Query: 434 VVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKS 493
V+ YNPLGWKR DI+R+PV+ +V+V DS+G +ESQL+P + ++LR + AYLG+S
Sbjct: 484 VLAYNPLGWKRVDIVRLPVVGGDVSVHDSEGHEVESQLVPFTDEYVALRKYHVEAYLGQS 543
Query: 494 TNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQIRQNDTIEVGPGNLKL 553
P YWL FS +VPPLGF TY IS+AK+ +S V + I +G G+LKL
Sbjct: 544 PTQVPKYWLVFSVTVPPLGFTTYTISTAKKTDGYSSKSYVSNILKGEQSIINIGHGHLKL 603
Query: 554 LYSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQP-----SGAYIFRPNGTYPI 608
+S + + Y+N +TS+ + ++Q++ YY +GS D +P SGAY+FRPNGT+PI
Sbjct: 604 SFSTDQGTAINYVNGRTSMTEPVKQTFSYYSAYNGSNDKEPLIPQNSGAYVFRPNGTFPI 663
Query: 609 EPEGQLSFTILRGPLLDEVHQRINPWIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVV 668
PEGQ+ T++ GPL+DEVHQ+INPWI Q+TRVYKGK+H E+EF VG IPIDDGIGKEVV
Sbjct: 664 NPEGQVPLTVIHGPLVDEVHQQINPWISQITRVYKGKEHVEVEFIVGNIPIDDGIGKEVV 723
Query: 669 TQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSE 728
TQI+S++ SNKTFYTDSSGRD+I+RIRDYR DW L+VNQPIAGNYYP+N GIY++D+ E
Sbjct: 724 TQISSSLKSNKTFYTDSSGRDYIKRIRDYRSDWKLDVNQPIAGNYYPINHGIYLQDSKKE 783
Query: 729 LSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYL 788
S++VDR+ GGSSI DGQ+ELMLHRRL+ DD+RGV+E LNETVCV DKC GLTI GKYY
Sbjct: 784 FSVMVDRAFGGSSIVDGQVELMLHRRLLLDDSRGVAENLNETVCVQDKCTGLTIQGKYYY 843
Query: 789 RIDPVGEAAKWRRSFGQEIYSPFLLAFTEQDGDHWANSHLATYSAMDTTYVLPDNVALIT 848
RIDP GE AKWRR+FGQEIYSP LLAF +QD + A++S +D +Y LPDNVAL+T
Sbjct: 844 RIDPYGEGAKWRRTFGQEIYSPLLLAFAQQDDGKPMSFGAASFSGIDPSYSLPDNVALLT 903
Query: 849 LQELDSGKILLRLAHLYEIEEDTDLSVMSSVELXXXXXXXXXXXVTEMNLSANQERAVME 908
LQELD G +LLRLAHLYE+EED +LS ++SVEL +TEM+LSANQER+ ME
Sbjct: 904 LQELDDGNVLLRLAHLYEVEEDKELSGVASVELKKLFPGKKIGKLTEMSLSANQERSTME 963
Query: 909 KKRLVWRVEGSSK--EQPTAVRGSPVDPAKLVVELAPMEIRTFVI 951
KKRLVW+VEG E+ A RG +DP KL +EL PMEIRT +I
Sbjct: 964 KKRLVWKVEGEGSYGEEKKAKRGREIDPRKLEMELYPMEIRTVLI 1008
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| TAIR|locus:2090817 AT3G26720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2156857 AT5G66150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:107286 Man2b1 "mannosidase 2, alpha B1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G5E928 MAN2B1 "Mannosidase, alpha, class 2B, member 1, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O00754 MAN2B1 "Lysosomal alpha-mannosidase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PKB2 MAN2B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| RGD|3039 Man2b1 "mannosidase, alpha, class 2B, member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0292206 manA "alpha-mannosidase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MMX7 MAN2B1 "Lysosomal alpha-mannosidase D peptide" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O00754 | MA2B1_HUMAN | 3, ., 2, ., 1, ., 2, 4 | 0.3941 | 0.9289 | 0.8793 | yes | no |
| Q8VHC8 | MA2B1_CAVPO | 3, ., 2, ., 1, ., 2, 4 | 0.3966 | 0.9184 | 0.8728 | yes | no |
| P34098 | MANA_DICDI | 3, ., 2, ., 1, ., 2, 4 | 0.3856 | 0.9362 | 0.8871 | yes | no |
| Q29451 | MA2B1_BOVIN | 3, ., 2, ., 1, ., 2, 4 | 0.3882 | 0.9174 | 0.8788 | yes | no |
| O09159 | MA2B1_MOUSE | 3, ., 2, ., 1, ., 2, 4 | 0.3882 | 0.9310 | 0.8795 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.XII.1318.1 | SubName- Full=Putative uncharacterized protein; (1003 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 957 | |||
| cd10810 | 278 | cd10810, GH38N_AMII_LAM_like, N-terminal catalytic | 1e-145 | |
| PLN02701 | 1050 | PLN02701, PLN02701, alpha-mannosidase | 2e-93 | |
| cd00451 | 258 | cd00451, GH38N_AMII_euk, N-terminal catalytic doma | 1e-85 | |
| pfam01074 | 269 | pfam01074, Glyco_hydro_38, Glycosyl hydrolases fam | 2e-79 | |
| cd10809 | 340 | cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal | 8e-58 | |
| cd10811 | 326 | cd10811, GH38N_AMII_Epman_like, N-terminal catalyt | 4e-49 | |
| cd11666 | 344 | cd11666, GH38N_Man2A1, N-terminal catalytic domain | 1e-48 | |
| cd11667 | 344 | cd11667, GH38N_Man2A2, N-terminal catalytic domain | 3e-45 | |
| pfam07748 | 379 | pfam07748, Glyco_hydro_38C, Glycosyl hydrolases fa | 3e-42 | |
| cd10786 | 251 | cd10786, GH38N_AMII_like, N-terminal catalytic dom | 5e-36 | |
| pfam09261 | 82 | pfam09261, Alpha-mann_mid, Alpha mannosidase, midd | 7e-23 | |
| smart00872 | 79 | smart00872, Alpha-mann_mid, Alpha mannosidase, mid | 2e-22 | |
| cd10789 | 252 | cd10789, GH38N_AMII_ER_cytosolic, N-terminal catal | 4e-06 | |
| cd10812 | 258 | cd10812, GH38N_AMII_ScAms1_like, N-terminal cataly | 1e-04 | |
| pfam07748 | 379 | pfam07748, Glyco_hydro_38C, Glycosyl hydrolases fa | 0.002 | |
| cd10793 | 279 | cd10793, GH57N_TLGT_like, N-terminal catalytic dom | 0.003 |
| >gnl|CDD|212121 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38) | Back alignment and domain information |
|---|
Score = 430 bits (1109), Expect = e-145
Identities = 141/248 (56%), Positives = 174/248 (70%), Gaps = 4/248 (1%)
Query: 15 ACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGG 74
A VQ +LDS+I L+ + +RKFIYVE AFF RWWR+QSE+ + VK+LV +GQLE INGG
Sbjct: 33 AGVQYILDSVIEELLKNPDRKFIYVEIAFFSRWWREQSEDTRQKVKKLVKNGQLEFINGG 92
Query: 75 MCMHDEAAPHYIDMIDQTTLGHRYIKEQFNV--TPRIGWQIDPFGHSAVQAYLLSAEVGF 132
CM+DEA HY D+IDQ TLGH+++K+ F PR+GWQIDPFGHS QA L + GF
Sbjct: 93 WCMNDEATTHYEDIIDQMTLGHQFLKDTFGECARPRVGWQIDPFGHSRTQASLFAQM-GF 151
Query: 133 DFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYFEVGD 192
D LFF RIDYQD+A+R+ K +E +WR S SLG A I TG+ +Y PP F F++
Sbjct: 152 DGLFFGRIDYQDKAQRLKNKEMEFIWRGSPSLGPDADIFTGVLYNHYGPP-PGFCFDILC 210
Query: 193 TSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMD 252
+QDD NL DYNV ERV+DFV A QA RTNHIM TMG+DF+YQ A WF+ MD
Sbjct: 211 GDEPIQDDPNLEDYNVDERVDDFVQYAKEQAQHYRTNHIMLTMGSDFQYQNAEMWFKNMD 270
Query: 253 KFIHYVNQ 260
K I YVN+
Sbjct: 271 KLIKYVNK 278
|
The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base. Length = 278 |
| >gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase | Back alignment and domain information |
|---|
| >gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38) | Back alignment and domain information |
|---|
| >gnl|CDD|216284 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38) | Back alignment and domain information |
|---|
| >gnl|CDD|212122 cd10811, GH38N_AMII_Epman_like, N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38) | Back alignment and domain information |
|---|
| >gnl|CDD|212131 cd11666, GH38N_Man2A1, N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38) | Back alignment and domain information |
|---|
| >gnl|CDD|212132 cd11667, GH38N_Man2A2, N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38) | Back alignment and domain information |
|---|
| >gnl|CDD|219551 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family 38 C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|212098 cd10786, GH38N_AMII_like, N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38) | Back alignment and domain information |
|---|
| >gnl|CDD|220157 pfam09261, Alpha-mann_mid, Alpha mannosidase, middle domain | Back alignment and domain information |
|---|
| >gnl|CDD|214875 smart00872, Alpha-mann_mid, Alpha mannosidase, middle domain | Back alignment and domain information |
|---|
| >gnl|CDD|212101 cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38) | Back alignment and domain information |
|---|
| >gnl|CDD|212123 cd10812, GH38N_AMII_ScAms1_like, N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38) | Back alignment and domain information |
|---|
| >gnl|CDD|219551 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family 38 C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|212105 cd10793, GH57N_TLGT_like, N-terminal catalytic domain of 4-alpha-glucanotransferase; glycoside hydrolase family 57 (GH57) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 957 | |||
| KOG1959 | 996 | consensus Glycosyl hydrolase, family 38 - alpha-ma | 100.0 | |
| PLN02701 | 1050 | alpha-mannosidase | 100.0 | |
| KOG1958 | 1129 | consensus Glycosyl hydrolase, family 38 - alpha-ma | 100.0 | |
| PRK09819 | 875 | alpha-mannosidase; Provisional | 100.0 | |
| KOG4342 | 1078 | consensus Alpha-mannosidase [Carbohydrate transpor | 100.0 | |
| COG0383 | 943 | AMS1 Alpha-mannosidase [Carbohydrate transport and | 100.0 | |
| PF01074 | 275 | Glyco_hydro_38: Glycosyl hydrolases family 38 N-te | 100.0 | |
| PF07748 | 457 | Glyco_hydro_38C: Glycosyl hydrolases family 38 C-t | 100.0 | |
| PF09261 | 80 | Alpha-mann_mid: Alpha mannosidase, middle domain; | 99.85 | |
| smart00872 | 79 | Alpha-mann_mid Alpha mannosidase, middle domain. M | 99.82 | |
| COG0383 | 943 | AMS1 Alpha-mannosidase [Carbohydrate transport and | 99.48 | |
| PF03065 | 360 | Glyco_hydro_57: Glycosyl hydrolase family 57; Inte | 98.24 | |
| COG1543 | 504 | Uncharacterized conserved protein [Function unknow | 96.05 | |
| PF01522 | 123 | Polysacc_deac_1: Polysaccharide deacetylase; Inter | 95.88 | |
| TIGR03212 | 297 | uraD_N-term-dom putative urate catabolism protein. | 94.21 | |
| COG1449 | 615 | Alpha-amylase/alpha-mannosidase [Carbohydrate tran | 92.63 | |
| TIGR02764 | 191 | spore_ybaN_pdaB polysaccharide deacetylase family | 92.36 | |
| TIGR03006 | 265 | pepcterm_polyde polysaccharide deactylase family p | 92.27 | |
| TIGR02884 | 224 | spore_pdaA delta-lactam-biosynthetic de-N-acetylas | 91.97 | |
| TIGR02873 | 268 | spore_ylxY probable sporulation protein, polysacch | 89.42 | |
| PRK14582 | 671 | pgaB outer membrane N-deacetylase; Provisional | 80.83 |
| >KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-215 Score=1791.47 Aligned_cols=919 Identities=50% Similarity=0.824 Sum_probs=831.8
Q ss_pred cccccccchhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHH
Q 002170 9 RFFFFVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDM 88 (957)
Q Consensus 9 ~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~ 88 (957)
++.||+++|++|+|+||++|.+||+|||+++|++||.+||++|++++|+.||+||++||||||||||||+|||++||.|+
T Consensus 63 ~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dv 142 (996)
T KOG1959|consen 63 KNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDV 142 (996)
T ss_pred CcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHhHHhhhccCceEEEEeeCCCCCC
Q 002170 89 IDQTTLGHRYIKEQFN--VTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGS 166 (957)
Q Consensus 89 Irql~~G~~~l~~~fG--~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~ 166 (957)
|+||+.||+||.++|| .+|++||||||||||+.+|+|| ++|||++++|+||||+||+.|..++.|||+|+|++++++
T Consensus 143 IDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslf-AqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~ 221 (996)
T KOG1959|consen 143 IDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLF-AQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGS 221 (996)
T ss_pred HHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHH-HHhCccchheeecchhhHHHHHhhccceEEeecCccccc
Confidence 9999999999999999 7999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCceeEEeCCCCCCCCCCCCccccCCCCCCccCCcccccCChHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCcchhH
Q 002170 167 SAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHT 246 (957)
Q Consensus 167 gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~ 246 (957)
.++|||++|+.||++| +|||||.+|.+.|++|++.+.++||++|++.|++..+.++.+|+|||||+|||+||+|.+|..
T Consensus 222 ~~~iFTg~l~n~Y~~P-~gfc~dv~c~d~Pi~D~~~~~d~NVkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v 300 (996)
T KOG1959|consen 222 SSQIFTGALYNHYSPP-PGFCFDVLCGDDPIIDGPRSYDYNVKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANV 300 (996)
T ss_pred hhhhhhhccccCCCCC-CCceeccccCCCCCCCCCCCCCccHHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CC-CeEEEEcChhhHHHHHHhcCCCCCcccCCCccCCcCCCCceeeeeccchhhhHHHHHHHH
Q 002170 247 WFRQMDKFIHYVNQ---DG-RVNALYSTPSMYIDAKYAANESWPLKTDDFFPYADRENAYWTGYFTSRPALKGYVRTMSA 322 (957)
Q Consensus 247 ~~~~~~~li~~~N~---~~-~~~v~~sT~~~Yf~a~~~~~~~~p~~~gdf~py~~~~~~yWtG~yTSr~~~K~~~R~~e~ 322 (957)
||+||||||+|+|+ .+ .+++.||||+||++++|+.+..||+++.|||||++++|.||||||||||.+|++.|++++
T Consensus 301 ~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~Twp~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~ 380 (996)
T KOG1959|consen 301 WFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQTWPVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSH 380 (996)
T ss_pred HHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcCcccccccccCcCCCCCCcceeeeccccHHHHHHHhhhhH
Confidence 99999999999994 34 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccc--CCCchHHHHHHHHhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 002170 323 YYLAARQLEFFKGRNE--VGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRLSIGYTEAEKVVAASLACLTEFSKNG 400 (957)
Q Consensus 323 ~L~~aE~l~~la~~~~--~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~ 400 (957)
.|++|++|.++|++.. ..+.++.|+++|++.|||||||||+|++|.+||+++|..|+..|+++++++|+.|+...
T Consensus 381 ~lq~akQL~~la~l~~~~~~~dl~~Lream~i~QHHDAVTGTekq~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--- 457 (996)
T KOG1959|consen 381 YLQVAKQLSVLAGLSSTEQGPDLDYLREAMAIMQHHDAVTGTEKQHVADDYARRLADGILGAEKLARDALRKLTNLP--- 457 (996)
T ss_pred HHHHHHHHhhhcCCCccccCccHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---
Confidence 9999999999998754 56789999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCccccccCCcccccCCCCccccCCCCceEEEEEcCCCceeeEEEEEEEeCCcEEEEcCCCCEEEEEEeeccccccc
Q 002170 401 CVNPITNFQQCPLLNISYCPPSEVDLSSGKSLVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMS 480 (957)
Q Consensus 401 ~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~ 480 (957)
..+|++|++||+|+||.++. ..+++.|+|||||+|.++++|+|||+.+++.|+|+.|++|++|++|.......
T Consensus 458 ----~~~f~~C~~lNiS~C~~t~~---~~~~~~v~~YNpLa~~~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~a 530 (996)
T KOG1959|consen 458 ----NGEFQSCLLLNISECAFTKD---GADNFIVTLYNPLAHTVTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLA 530 (996)
T ss_pred ----CccchhhhhhccccCCCCcC---CcCcEEEEEEcCCcceeeeEEEEeccCCCeEEECCCCCCcccceeccchhhhh
Confidence 34799999999999999863 35778999999999999999999999999999999999999999998764433
Q ss_pred ccccccccccCCCCCCCCcEEEEEEEeeCCCceEEEEEEeCCccCCccccceeeeccccCCCceEEccCeEEEEEECCCC
Q 002170 481 LRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQIRQNDTIEVGPGNLKLLYSGKRA 560 (957)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G 560 (957)
+.. ......++|+|.|.|||+|+++|.|+....+...+ .+.+............|+|+++++.||.++|
T Consensus 531 l~~----------~~~~~~~eLvf~asvpplg~aty~i~k~~~~~~~~-~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG 599 (996)
T KOG1959|consen 531 LES----------RNNDTKHELVFKASVPPLGIATYFIKKVASTERGS-ASHVRNIKKRESNATEVGNSHLKLVFDNDTG 599 (996)
T ss_pred hhc----------cccCCCceEEEEEEecCccceEEEEeecCcccccc-cccccccccccCcceEeccceEEEEEcCCCC
Confidence 211 12345689999999999999999999655432210 0111111122333489999999999998889
Q ss_pred cEEEEEecccceeeEEEEEEEEeecCCCCCCCCCCcceEEccCCCCccCCC-CCceEEEEeCCceEEEEEEEcCeEEEEE
Q 002170 561 KLMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQPSGAYIFRPNGTYPIEPE-GQLSFTILRGPLLDEVHQRINPWIYQVT 639 (957)
Q Consensus 561 ~l~si~dk~~g~~~~~~~~~~~Y~~~~g~~~~~~sgAYiF~P~~~~~~~~~-~~~~i~v~~G~l~~~v~~~~~s~i~q~i 639 (957)
.++++....+|.+..+.|+|.+|.++.|+++.+.||||+|+| +..++++. ....++|+.|||+.||++.++.|++|++
T Consensus 600 ~l~~v~~n~t~~t~~V~Q~f~~Y~~~~g~n~~q~SgAYiFRp-~~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQvi 678 (996)
T KOG1959|consen 600 LLKTVEMNQTGVTENVDQEFGYYKGYRGDNDKQASGAYIFRP-GQADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVI 678 (996)
T ss_pred ceEEEEecccCcceeeeeeeEEEEeecCCcCCccCcceEecC-CCCCccccccceEEEEecCchHHHHHHHHHHHHhhee
Confidence 999999888999999999999999988875568999999999 54444443 3578999999999999999999999999
Q ss_pred EEEcCCCceeEEEEEccccccCCCCcEEEEEEEeeccCCCeEEEcCCcccceecccccccCcccccCCCcccceeeccce
Q 002170 640 RVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLG 719 (957)
Q Consensus 640 rLy~~~~~ie~e~~v~~i~~~~~~~~el~~~f~t~i~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~ 719 (957)
|+|+|.+++||||.|+|||++++.|||++.||+|+|+|++.|||||||+|||||.+++|++|..+.++|||||||||++.
T Consensus 679 Rvy~g~~~~E~Ew~VGpIp~~d~~gkEvVtr~~t~i~S~g~fYTDSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~ 758 (996)
T KOG1959|consen 679 RVYEGKNHVEFEWLVGPIPIDDGIGKEVVTRFSTEISSNGVFYTDSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSR 758 (996)
T ss_pred EecCCCcceEEEEEecceecCCCccceEEEEeccccccCceEEecCcHHHHHHHHhcccCCCccccCcccccccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeCCceEEEEecCCccccccCCCeEEEEEEeeccCcCCcCcccccccccccccccCCeEEEeEEEEEecCccchh-h
Q 002170 720 IYMKDNSSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAA-K 798 (957)
Q Consensus 720 ~~I~D~~~~ltvl~dr~~G~sS~~~G~ielml~Rr~~~dD~rGv~e~l~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 798 (957)
|||+|++.+|+|||||+|||||++||+||||||||+++||+|||||+|||+.++ ..||+++|+|++.|+...+.+ .
T Consensus 759 i~lqD~~~rl~vL~DRAqGgsSl~dG~lElMLHRRl~~DD~~Gv~EaLnEt~~~---~~gL~~rGk~~~~l~~~~d~a~~ 835 (996)
T KOG1959|consen 759 IYLQDSKKRLSVLNDRAQGGSSLKDGQLELMLHRRLLNDDGRGVGEALNETVYG---HAGLIARGKLYVLLDKAGDGATG 835 (996)
T ss_pred eEEecCCceEEEEeecccCCccccCCeEEEEeeehhhcccccccchhccccccc---ccceEEeeeEEEEEecccccchh
Confidence 999999999999999999999999999999999999999999999999999886 279999999999999887765 6
Q ss_pred hcccchhhhccCceeeeeccCCCccccccccccccCcccccCCCcceEEEeeecCCCcEEEEEeeccccccCCCCceeee
Q 002170 799 WRRSFGQEIYSPFLLAFTEQDGDHWANSHLATYSAMDTTYVLPDNVALITLQELDSGKILLRLAHLYEIEEDTDLSVMSS 878 (957)
Q Consensus 799 ~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lp~nv~l~tl~~~~~~~~llRl~~~~~~~~~~~~s~~~~ 878 (957)
++|..++++..|.+.+|++..+..+........+.+..+..||.+|||+||++|+++.+||||+|+|++|||+.+|++++
T Consensus 836 ~~r~~~~ei~~P~~~~f~~~~~~~~~~~~s~~~~~f~~~~~lP~~vhLlTLe~~~~~~vLlRleh~~e~gED~~~s~vvs 915 (996)
T KOG1959|consen 836 WRRLAEQEIHLPLWKFFSKPEGGEALNSLSIPGSAFSGSYDLPQSVHLLTLEEWSKDEVLLRLEHLYEVGEDSELSQVVS 915 (996)
T ss_pred hhhhhhhhcccHHHHHhhcCCCccchhhcCCCccccccccCCCcceeeeecccCCCCceEeeehhhhhcccccccCcceE
Confidence 77889999999999999987664443322222222222358999999999999999999999999999999999999999
Q ss_pred eeccccCCCCccceEEecccccchhhhHhhhcceeeeec-CC-C--CCCCcccCCCCCCC-CCceEEecCcceeEEEEEE
Q 002170 879 VELKKVFPKKKISKVTEMNLSANQERAVMEKKRLVWRVE-GS-S--KEQPTAVRGSPVDP-AKLVVELAPMEIRTFVIEF 953 (957)
Q Consensus 879 v~l~~lf~~~~~~~i~E~sLt~~~~~~~~~~~r~~w~~~-~~-~--~~~~~~~~~~~~~~-~~~~v~l~P~eIrTf~v~~ 953 (957)
|+|.+||..+++.+|+||+|+||+++++| +|++|..+ .+ . .....+.+..|+++ +.+.|+|.|||||||+|+.
T Consensus 916 fnl~~lf~~~~i~~i~EttL~gN~~ls~m--kr~k~~~~~~G~~~~~~~~~~s~~~p~~~~~~~~vtL~PmeIRTfii~~ 993 (996)
T KOG1959|consen 916 FNLRKLFSALDIVEIRETTLDGNQPLSDM--KRFKFHWDVSGEKPSGVEYSTSRHKPLDKTSEFIVTLHPMEIRTFIIKF 993 (996)
T ss_pred EEhHHhhcccCeeEEEEeeccCccChhhh--hhhccccCCCCCCCCCccccccCCCCCCcccceEEEEeccEEEEEEEEE
Confidence 99999999999999999999999999999 55555444 22 1 12223456667765 6789999999999999998
Q ss_pred eec
Q 002170 954 YSE 956 (957)
Q Consensus 954 ~~~ 956 (957)
+++
T Consensus 994 ~~~ 996 (996)
T KOG1959|consen 994 QQK 996 (996)
T ss_pred ecC
Confidence 764
|
|
| >PLN02701 alpha-mannosidase | Back alignment and domain information |
|---|
| >KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09819 alpha-mannosidase; Provisional | Back alignment and domain information |
|---|
| >KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold | Back alignment and domain information |
|---|
| >smart00872 Alpha-mann_mid Alpha mannosidase, middle domain | Back alignment and domain information |
|---|
| >COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >COG1543 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase | Back alignment and domain information |
|---|
| >TIGR03212 uraD_N-term-dom putative urate catabolism protein | Back alignment and domain information |
|---|
| >COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB | Back alignment and domain information |
|---|
| >TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase | Back alignment and domain information |
|---|
| >TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family | Back alignment and domain information |
|---|
| >PRK14582 pgaB outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 957 | ||||
| 1ps3_A | 1045 | Golgi Alpha-mannosidase Ii In Complex With Kifunens | 3e-71 | ||
| 3dx3_A | 1045 | Golgi Alpha-Mannosidase Ii In Complex With Mannosta | 4e-71 | ||
| 1qwn_A | 1045 | Golgi Alpha-Mannosidase Ii Covalent Intermediate Co | 4e-71 | ||
| 1hxk_A | 1015 | Golgi Alpha-Mannosidase Ii In Complex With Deoxyman | 4e-71 | ||
| 1qwu_A | 1045 | Golgi Alpha-Mannosidase Ii D341n Mutant Complex Wit | 1e-70 | ||
| 3cv5_A | 1045 | Golgi Mannosidase Ii D204a Catalytic Nucleophile Mu | 3e-70 | ||
| 1hty_A | 1015 | Golgi Alpha-Mannosidase Ii Length = 1015 | 3e-67 | ||
| 1o7d_A | 298 | The Structure Of The Bovine Lysosomal A-Mannosidase | 1e-59 | ||
| 1o7d_D | 282 | The Structure Of The Bovine Lysosomal A-Mannosidase | 5e-51 | ||
| 1o7d_C | 159 | The Structure Of The Bovine Lysosomal A-Mannosidase | 2e-19 | ||
| 1o7d_B | 84 | The Structure Of The Bovine Lysosomal A-Mannosidase | 5e-14 | ||
| 1o7d_E | 126 | The Structure Of The Bovine Lysosomal A-Mannosidase | 1e-06 |
| >pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine Length = 1045 | Back alignment and structure |
|
| >pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin Analog (1r,2r, 3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol Length = 1045 | Back alignment and structure |
| >pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex With 5- Fluoro-Gulosyl-Fluoride Length = 1045 | Back alignment and structure |
| >pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin Length = 1015 | Back alignment and structure |
| >pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With 5-F-Guloside Length = 1045 | Back alignment and structure |
| >pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant Complex With 3alpha,6alpha-Mannopentaose Length = 1045 | Back alignment and structure |
| >pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii Length = 1015 | Back alignment and structure |
| >pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 298 | Back alignment and structure |
| >pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 282 | Back alignment and structure |
| >pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 159 | Back alignment and structure |
| >pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 84 | Back alignment and structure |
| >pdb|1O7D|E Chain E, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 126 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Length = 1045 | Back alignment and structure |
|---|
Score = 710 bits (1833), Expect = 0.0
Identities = 233/1008 (23%), Positives = 406/1008 (40%), Gaps = 130/1008 (12%)
Query: 13 FVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELIN 72
+ +++L + + L + KFI+ E ++F R++ D E + +K +V +GQLE +
Sbjct: 103 YQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVT 162
Query: 73 GGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGF 132
GG M DEA H+ +++ Q T G ++K+ NVTP W I PFGHS Y+L + GF
Sbjct: 163 GGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYIL-QKSGF 221
Query: 133 DFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKN-YEPPS-------- 183
+ R Y + + ++ LE +WR + T + P Y+ P
Sbjct: 222 KNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKV 281
Query: 184 -DNFYFE----VGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTD 238
F F+ G + P + D NV R + V +A + RTN ++ +G D
Sbjct: 282 CCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDD 341
Query: 239 FKYQYAHTWFRQ---MDKFIHYVNQDGR--VNALYSTPSMYIDA----KYAANESWPLKT 289
F+++ W Q ++ ++N V A + T Y DA + A +P +
Sbjct: 342 FRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLS 401
Query: 290 DDFFPYADRENAYWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKGRNEVGLSTDSLADA 349
DFF YADR + YW+GY+TSRP K R + Y AA L + + + + L A
Sbjct: 402 GDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQA 461
Query: 350 ---LALVQHHDAVSGTEKQHVADDYAKRLSIGYTEAEKVVAASLACLTEFSKNGCVNPIT 406
L+L QHHD ++GT K HV DY +R+ + V+ S+ L +K +P
Sbjct: 462 RRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL--TKPSIYSPDF 519
Query: 407 NFQQCPLLNISYCPPSEVDLS---------SGKSLVVVVYNPLGWKREDIIRIPVINENV 457
+F L+ S P S V+ S S VV++N L RE ++ V + V
Sbjct: 520 SFSYF-TLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFV 578
Query: 458 TVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYI 517
+V D +E+Q+ P+ T Y + F A VPP+G TY+
Sbjct: 579 SVTDLANNPVEAQVSPVWSWHHDTLTKTI-----HPQGSTTKYRIIFKARVPPMGLATYV 633
Query: 518 ISSAKQAASHSGMRTVYKSQIRQN----------------DTIEVGPGNLKLLYSGKRAK 561
++ + H+ + + I + GN L ++
Sbjct: 634 LTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGL 693
Query: 562 LMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQPSGAYIFRPNGTYPIEPEGQLSFTILRG 621
L ++ S + + ++ Y SGAY+F PNG GQ + +G
Sbjct: 694 LKSIQLTQDSPHVPVHFKFLKYGVRSHG---DRSGAYLFLPNGPASPVELGQPVVLVTKG 750
Query: 622 PLLDEVHQRINPWIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTF 681
L V + ++Q G +G + E+V ++ +++ S F
Sbjct: 751 KLESSVSVGLPSVVHQTIM-RGGAPEIRNLVDIGSLD-----NTEIVMRLETHIDSGDIF 804
Query: 682 YTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSS 741
YTD +G FI+R R + P+ NYYP+ G++++D ++ L++L + +GGSS
Sbjct: 805 YTDLNGLQFIKRRRLDK--------LPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSS 856
Query: 742 IADGQLELMLHRRLVADDNRGVSEALNETV-------CVFDKCEGLTIIGKYYLRIDPVG 794
+A G+LE+M RRL +DD RG+ + + + V +K K + P G
Sbjct: 857 LASGELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLEKVNNCVRPSK----LHPAG 912
Query: 795 EAAKWRRSFGQEIYSPFLLAFTEQDGDHWANSHLATYSAMDTTYVLPDNVALITLQELDS 854
Q + P + + W + + + +++ + ++ L
Sbjct: 913 YLTSAAHKASQSLLDPLDKFIFAE--NEWIGAQ-GQFGGDHPS--AREDLDVSVMRRLTK 967
Query: 855 GK-------ILLRLAHLYEIEEDTDLSVMSSVELKKVFPKKKISKVTEMNLSANQERAVM 907
+L +L + + + +++ + P +++ L+ Q +
Sbjct: 968 SSAKTQRVGYVLHRTNLMQCGTPEEHTQK--LDVCHLLP--NVARCERTTLTFLQNLEHL 1023
Query: 908 EKKRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFVIEFYS 955
+ + E+ PME +V S
Sbjct: 1024 DG--------------------------MVAPEVCPMETAAYVSSHSS 1045
|
| >1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6 Length = 282 | Back alignment and structure |
|---|
| >1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Length = 298 | Back alignment and structure |
|---|
| >3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Length = 899 | Back alignment and structure |
|---|
| >2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Length = 923 | Back alignment and structure |
|---|
| >1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6 Length = 159 | Back alignment and structure |
|---|
| >1o7d_E Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6 Length = 126 | Back alignment and structure |
|---|
| >1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1 Length = 84 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 957 | |||
| 3bvx_A | 1045 | Alpha-mannosidase 2; family 38 glycoysl hydrolase, | 100.0 | |
| 2wyh_A | 923 | Alpha-mannosidase; hydrolase, glycosidase, glycosi | 100.0 | |
| 3lvt_A | 899 | Glycosyl hydrolase, family 38; PSI, MCSG, structur | 100.0 | |
| 1o7d_A | 298 | Lysosomal alpha-mannosidase; hydrolase, glycosyl h | 100.0 | |
| 1o7d_D | 282 | Lysosomal alpha-mannosidase; hydrolase, glycosyl h | 100.0 | |
| 1o7d_C | 159 | Lysosomal alpha-mannosidase; hydrolase, glycosyl h | 99.97 | |
| 1o7d_E | 126 | Lysosomal alpha-mannosidase; hydrolase, glycosyl h | 99.92 | |
| 1o7d_B | 84 | Lysosomal alpha-mannosidase; hydrolase, glycosyl h | 99.88 | |
| 1k1x_A | 659 | 4-alpha-glucanotransferase; 2.40A {Thermococcus li | 99.69 | |
| 3p0b_A | 540 | TT1467 protein; glycoside hydrolase GH57, glycogen | 98.79 | |
| 3n98_A | 562 | Alpha-amylase, GH57 family; GH57 family member, br | 98.76 | |
| 2b5d_X | 528 | Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2. | 98.63 | |
| 3s6o_A | 321 | Polysaccharide deacetylase family protein; ssgcid, | 95.34 | |
| 3rxz_A | 300 | Polysaccharide deacetylase; structural genomics, P | 95.28 | |
| 3cl6_A | 308 | PUUE allantoinase; URIC acid, nitrogen fixation, h | 95.22 | |
| 2cc0_A | 195 | Acetyl-xylan esterase; hydrolase, carbohydrate est | 90.38 | |
| 2y8u_A | 230 | Chitin deacetylase; hydrolase; 1.99A {Emericella n | 90.08 | |
| 1ny1_A | 240 | Probable polysaccharide deacetylase PDAA; structur | 86.28 | |
| 3qbu_A | 326 | Putative uncharacterized protein; metallo enzyme, | 84.99 | |
| 2j13_A | 247 | Polysaccharide deacetylase; family 4, peptidoglyca | 82.73 |
| >3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-159 Score=1491.78 Aligned_cols=881 Identities=25% Similarity=0.419 Sum_probs=738.5
Q ss_pred ccccccccc---cchhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCC
Q 002170 6 TAFRFFFFV---ACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAA 82 (957)
Q Consensus 6 ~~~~~~~~~---~~v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~ 82 (957)
.+|-+++.. +++++||++||++|++||++||+|+|++||++||++++|+++++||+||++|||||+||||||+|||+
T Consensus 93 ~gWl~t~~e~~~~~~~~~~~~vl~~L~~~p~~~F~~~e~~~l~~w~~e~~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~ 172 (1045)
T 3bvx_A 93 PGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEAN 172 (1045)
T ss_dssp SSSSSCHHHHHHHTHHHHHHHHHHHHHHCTTCCEEECCHHHHHHHHHHSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSS
T ss_pred ccccchHHHhhhHHHHHHHHHHHHHHHHCCCcEEEEecHHHHHHHHHHCCHHHHHHHHHHHhCCCEEEECCccccccccC
Confidence 457666554 36789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHhHHhhhccCceEEEEeeCC
Q 002170 83 PHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASK 162 (957)
Q Consensus 83 ~~~es~Irql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d 162 (957)
+||||+||||++||+|++++||+.|++||+|||||||++||||| ++|||++++|+|++|++++.|+..+.+||+|+|++
T Consensus 173 ~~~EslirQl~~G~~~~~~~FG~~~~~~W~pD~FG~s~~lPqil-~~~Gi~~~~~~R~~~~~~~~~~~~k~~eF~W~~~w 251 (1045)
T 3bvx_A 173 SHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIW 251 (1045)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCSSSBCTHHHHHH-HTTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCceEEcCCCCCccHHHHHHH-HHcCCCeEEEecccccccccccccCCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999998999999999766
Q ss_pred CCCCCCceeEEeCCC-CCCC-----CCC----CCccccCCC---CCCccCCc-ccccCChHHHHHHHHHHHHHhccccCC
Q 002170 163 SLGSSAQIMTGISPK-NYEP-----PSD----NFYFEVGDT---SPIVQDDM-NLFDYNVPERVNDFVSAAIAQANITRT 228 (957)
Q Consensus 163 ~~~~gs~i~th~~~~-~Y~~-----p~~----~f~f~~~~~---~~~~~~~~-~~~~~nv~~~~~~~~~~~~~~~~~~~t 228 (957)
+..+||+||||++|. +|+. |++ +|+|+.+.. .|||.++| .++++|++++++.+++++++++.+|++
T Consensus 252 ~~~dGs~Ilt~~~p~~~Y~~~~~~gp~~~~c~~fdf~~l~~~~~~~~~~~~p~~~~~~nv~~r~~~~~~~~~~~~~~~~t 331 (1045)
T 3bvx_A 252 DNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRT 331 (1045)
T ss_dssp CSSCTTCEEEEECCSSCSSGGGTSSSCHHHHGGGCGGGSSTTSCCCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCeEEEEeccccccCcccccCCCccccccccccccccccccCcccCCcccccHHHHHHHHHHHHHHHHHhhcccCC
Confidence 555599999999994 6753 323 355655432 45555444 567789999999999999999889999
Q ss_pred CeEEEEecCCCCCcchhHH---HHHHHHHHHHHhcCC--CeEEEEcChhhHHHHHHhcC----CCCCcccCCCccCCcCC
Q 002170 229 NHIMWTMGTDFKYQYAHTW---FRQMDKFIHYVNQDG--RVNALYSTPSMYIDAKYAAN----ESWPLKTDDFFPYADRE 299 (957)
Q Consensus 229 ~~il~~~G~Df~y~~a~~~---~~~~~~li~~~N~~~--~~~v~~sT~~~Yf~a~~~~~----~~~p~~~gdf~py~~~~ 299 (957)
+++|+|+|+||+|+++.+| |+||+++|+++|+.+ .++++|||+++||+++++.. ..||++.|||++|++++
T Consensus 332 ~~~l~~~G~d~~~~~~~~~~~~~~n~~~li~~in~~~~~~~~v~~sT~~~yf~~l~~~~~~~~~~lp~~~Ge~~~~~~~~ 411 (1045)
T 3bvx_A 332 NVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRS 411 (1045)
T ss_dssp SEEEEEEEEETCSCSHHHHHHHHHHHHHHHHHHHHCGGGCEEEEECCHHHHHHHHHHHHHTTSCCCCEEESCBCSCEEET
T ss_pred CeEEEEecCCCCCcchhhhHHHHHHHHHHHHHHhhCCCCCceEEECCHHHHHHHHHhhcccccccCcccCCcccccccCC
Confidence 9999999999999998765 899999999999753 58999999999999998753 36999999999999999
Q ss_pred CCceeeeeccchhhhHHHHHHHHHHHHHHHHHhhhcc---ccCCCchHHHHHHHHhhhccccccCccchhhHHHHHHHHH
Q 002170 300 NAYWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKGR---NEVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRLS 376 (957)
Q Consensus 300 ~~yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~la~~---~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~ 376 (957)
++||+|||||||.+|+++|++|++|++||+|+++|.. .++...++++|++|+++||||+|||||+++|++||.+||.
T Consensus 412 ~~yw~G~yTSr~~~K~~nR~~e~~L~~aE~l~ala~~~~~~~~~~~L~~~wk~lll~QhHD~i~Gts~~~V~~d~~~rl~ 491 (1045)
T 3bvx_A 412 DNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQ 491 (1045)
T ss_dssp TEECCGGGTSSHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGCHHHHHHHHHHHHHHHTBTTTTTSCSCHHHHHHHHHHHH
T ss_pred cccccceecccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccCCCCcChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999864 3455678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCC---ccccccCCcccccCCCCccccCCCC---ceEEEEEcCCCceeeEEEEE
Q 002170 377 IGYTEAEKVVAASLACLTEFSKNGCVNPI---TNFQQCPLLNISYCPPSEVDLSSGK---SLVVVVYNPLGWKREDIIRI 450 (957)
Q Consensus 377 ~a~~~~~~~~~~~l~~L~~~~~~~~~~~~---~~~~~~~~ln~s~c~~~~~~~~~~~---~~~v~v~Npl~~~r~~~V~i 450 (957)
+|...++.++..+++.|+......+..+. ..++.|.+++.+.|+....-...++ ...|+|||||+|+|+++|+|
T Consensus 492 ~a~~~~~~l~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vvvfN~L~~~r~~~V~v 571 (1045)
T 3bvx_A 492 EALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDF 571 (1045)
T ss_dssp HHHHHHHHHHHHHHHHHTBCTTTCCCCTTSCSEEEECSSSSCTTTCCCCCEECCBTTTBSEEEEEEEECSSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccchhhhcccccccccccccccccccccCCceEEEEcCCCcceeeEEEE
Confidence 99999999999999999853222111111 2233455567777775421000122 56899999999999999999
Q ss_pred EEeCCcEEEEcCCCCEEEEEEeecccccccccccccccccCCCCCCCCcEEEEEEEeeCCCceEEEEEEeCCccCCcccc
Q 002170 451 PVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGM 530 (957)
Q Consensus 451 ~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~~~~~~~~ 530 (957)
+|+.+.+.|+|.+|++|++|+++.+.....+....+ ........|+|+|.++||||||++|.|............
T Consensus 572 ~v~~~~~~V~D~~G~~v~~Qi~~~~~~~~~~~~~~~-----~~~~~~~~~~L~f~a~vP~lG~~ty~i~~~~~~~~~~~~ 646 (1045)
T 3bvx_A 572 YVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTI-----HPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEHTSY 646 (1045)
T ss_dssp EESCSCEEEEETTCCEECEEEEEEEEEEEETTTTEE-----EEEEEEEEEEEEEEEEECTTEEEEEEEEECSSCCTTEEE
T ss_pred EeccCceEEEcCCCCEEeEEEeeccccccccccccc-----cccCCCCcEEEEEEeccCCceeEEEEEEecCCccccccc
Confidence 999999999999999999999987643221100000 000112357899999999999999999876543210000
Q ss_pred cee----------eec-cccCCCceEEccCeE------EEEEECCCCcEEEEEecccceeeEEEEEEEEeecCCCCCCCC
Q 002170 531 RTV----------YKS-QIRQNDTIEVGPGNL------KLLYSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQ 593 (957)
Q Consensus 531 s~~----------~~~-~~~~~~~~~ieN~~~------~v~~~~~~G~l~si~dk~~g~~~~~~~~~~~Y~~~~g~~~~~ 593 (957)
+++ ... .....+...|||++| +|+|++ +|.|++|+||++|+++.+.++|.+|.+..+ ++
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~leN~~~~~~~~~~v~fd~-~G~L~si~dk~~g~e~~~~~~f~~Y~~~~~---~~ 722 (1045)
T 3bvx_A 647 ASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSE-QGLLKSIQLTQDSPHVPVHFKFLKYGVRSH---GD 722 (1045)
T ss_dssp CEEEEECSSCCCCCCTTCSSCCEEECCCCEEEECTTSCEEEECT-TSCEEEEECSTTSCCEEEEEEEEEECBCSS---SC
T ss_pred cceeecccccccccccccccCCCceeecccccccccccEEEECC-CCcEEEEEEcCCCeEEEEeeEEEEEecccC---CC
Confidence 011 000 001234578999999 999995 999999999999999999999999976544 67
Q ss_pred CCcceEEccCCCC-ccCCCCCceEEEEeCCceEEEEEEEcCeEEEEEEEEcCCCceeEEEEEccccccCCCCcEEEEEEE
Q 002170 594 PSGAYIFRPNGTY-PIEPEGQLSFTILRGPLLDEVHQRINPWIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQIT 672 (957)
Q Consensus 594 ~sgAYiF~P~~~~-~~~~~~~~~i~v~~G~l~~~v~~~~~s~i~q~irLy~~~~~ie~e~~v~~i~~~~~~~~el~~~f~ 672 (957)
.||||+|+|++.. ++.. ....++|++|||+++|++.+ ++++|++|| ++++|||+++|+ |.+..|||++++|+
T Consensus 723 ~sgaY~F~P~~~~~~~~~-~~~~~~v~~Gpl~~ev~~~~-~~i~q~irL--~~~~ieie~~Vd---~~~~~~~el~~rf~ 795 (1045)
T 3bvx_A 723 RSGAYLFLPNGPASPVEL-GQPVVLVTKGKLESSVSVGL-PSVVHQTIM--RGGAPEIRNLVD---IGSLDNTEIVMRLE 795 (1045)
T ss_dssp CCCSSCCCBSSSCEECCC-CSCCEEEEECSSCEEEEEEE-TTEEEEEEE--SSSSCEEEEEEC---CTTCTTEEEEEEEE
T ss_pred CCcceEecCCCCCccccc-CCceEEEEeCCeEEEEEEEE-eeEEEEEEE--CCeeEEEEEEEe---cCCCCCeEEEEEee
Confidence 8999999999875 4333 35678899999999999999 589999999 888999999994 55456999999999
Q ss_pred eeccCCCeEEEcCCcccceecccccccCcccccCCCcccceeeccceeeeEeCCceEEEEecCCccccccCCCeEEEEEE
Q 002170 673 SNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSSIADGQLELMLH 752 (957)
Q Consensus 673 t~i~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~~~I~D~~~~ltvl~dr~~G~sS~~~G~ielml~ 752 (957)
|+|+|+..||||+|||++|+|+++. .+|+++|||||+++|+|+|++.|||||+||+||+||+++|+||||||
T Consensus 796 t~i~s~~~fyTD~nG~~~ikR~~~~--------~~p~~~NyYPv~s~~~i~D~~~~ltvl~drs~G~sSl~~G~lElmlh 867 (1045)
T 3bvx_A 796 THIDSGDIFYTDLNGLQFIKRRRLD--------KLPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQD 867 (1045)
T ss_dssp ECCCCTTEEEEEETTTEEEEEECCT--------TSCGGGGCEEESSEEEEECSSEEEEEEESSCEEEECCSTTEEEEEEE
T ss_pred cccCCCCeEEEecCCceeEEcCCCC--------CCCcccceEEeeeeEEEEcCCeeEEEEecCCccccccCCCeEEEEEe
Confidence 9999998999999999999999874 36899999999999999999999999999999999999999999999
Q ss_pred eeccCcCCcCcccccccccccccccCCeEEEeEEEEEecCccchhh------------hcccchhhhccCceeeeeccCC
Q 002170 753 RRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAAK------------WRRSFGQEIYSPFLLAFTEQDG 820 (957)
Q Consensus 753 Rr~~~dD~rGv~e~l~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~r~~~~~l~~p~~~~~~~~~~ 820 (957)
||+++||+|||||||+|+ ++++|+|||++++...++. ..|..++++++|++++++....
T Consensus 868 Rrl~~DD~rGvge~l~d~---------~~~~~~~~l~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~p~~~~~~~~~~ 938 (1045)
T 3bvx_A 868 RRLASDDERGLGQGVLDN---------KPVLHIYRLVLEKVNNCVRPSKLHPAGYLTSAAHKASQSLLDPLDKFIFAENE 938 (1045)
T ss_dssp EEBCSCCSSSCCSCBCCC---------CCEEEEEEEEEEECTTSCCCCTTCSEECCCHHHHHHHHHHHSCCEEEEECSSC
T ss_pred eeeccCCcccccccccCC---------ceeeeEEEEEEecccccccccccccccccCHHHHHHHHHHhCCcceeeccCcc
Confidence 999999999999999986 4589999999997654331 2456788999999999876332
Q ss_pred CccccccccccccCcccccCCCcceEEEeeecCCCc-----EEEEEeec--cccccCCCCceeeeeeccccCCCCccceE
Q 002170 821 DHWANSHLATYSAMDTTYVLPDNVALITLQELDSGK-----ILLRLAHL--YEIEEDTDLSVMSSVELKKVFPKKKISKV 893 (957)
Q Consensus 821 ~~~~~~~~~~~~~l~~~~~lp~nv~l~tl~~~~~~~-----~llRl~~~--~~~~~~~~~s~~~~v~l~~lf~~~~~~~i 893 (957)
+ .....+|+++.. +|||||||+|||+++++. +|||| |. |+++++.. +++++|||.+||.. ++++
T Consensus 939 --~-~~~~~~~~~l~~--~lP~~vhlltL~~~~~~~~~~~~~ll~L-~~~~~~~~~~~~-s~~~~~~l~~lf~~--i~~~ 1009 (1045)
T 3bvx_A 939 --W-IGAQGQFGGDHP--SAREDLDVSVMRRLTKSSAKTQRVGYVL-HRTNLMQCGTPE-EHTQKLDVCHLLPN--VARC 1009 (1045)
T ss_dssp --C-TTBCSEECTTSC--CCCTTEEEEEEEECSCTTCSEEEEEEEE-EECCCCCCSCCC-CCCCCCCGGGSSSS--EEEE
T ss_pred --c-ccccccCCcccc--cCCCCEEEEEeEecCCCCccCceEEEEE-eeeccccCcCcc-cCcccccHHHHhcC--cceE
Confidence 2 223566887753 899999999999999887 99999 55 89988765 78999999999998 9999
Q ss_pred EecccccchhhhHhhhcceeeeecCCCCCCCcccCCCCCCCCCceEEecCcceeEEEEEEee
Q 002170 894 TEMNLSANQERAVMEKKRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFVIEFYS 955 (957)
Q Consensus 894 ~E~sLt~~~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~v~l~P~eIrTf~v~~~~ 955 (957)
+||||+|++.++++. +...|+|+|||||||+|++++
T Consensus 1010 ~etsL~~~~~~~~~~--------------------------~~~~v~l~PmeirTf~i~~~~ 1045 (1045)
T 3bvx_A 1010 ERTTLTFLQNLEHLD--------------------------GMVAPEVCPMETAAYVSSHSS 1045 (1045)
T ss_dssp EEECTTSCSEEEECG--------------------------GGCCCCCCTTCEEEEEEEEEC
T ss_pred EEecccCCccccccC--------------------------CCcceEEcCceeEEEEEEeeC
Confidence 999999997775431 123689999999999999874
|
| >2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* | Back alignment and structure |
|---|
| >3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 | Back alignment and structure |
|---|
| >1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6 | Back alignment and structure |
|---|
| >1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6 | Back alignment and structure |
|---|
| >1o7d_E Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6 | Back alignment and structure |
|---|
| >1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1 | Back alignment and structure |
|---|
| >1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* | Back alignment and structure |
|---|
| >3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A | Back alignment and structure |
|---|
| >3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A* | Back alignment and structure |
|---|
| >2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4 | Back alignment and structure |
|---|
| >3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6 | Back alignment and structure |
|---|
| >3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A | Back alignment and structure |
|---|
| >2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 | Back alignment and structure |
|---|
| >2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans} | Back alignment and structure |
|---|
| >1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 | Back alignment and structure |
|---|
| >3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 957 | ||||
| g1o7d.2 | 490 | b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosoma | 1e-141 | |
| d3bvua2 | 522 | b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II { | 1e-124 | |
| g1o7d.3 | 330 | c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-manno | 4e-89 | |
| d3bvua3 | 381 | c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fru | 6e-89 | |
| d1k1xa3 | 310 | c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-te | 3e-35 | |
| d3bvua1 | 111 | a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fr | 2e-26 | |
| g1o7d.1 | 95 | a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mann | 5e-25 |
| >d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 522 | Back information, alignment and structure |
|---|
| >d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 381 | Back information, alignment and structure |
|---|
| >d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 310 | Back information, alignment and structure |
|---|
| >d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 957 | |||
| g1o7d.2 | 490 | Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax | 100.0 | |
| d3bvua2 | 522 | Golgi alpha-mannosidase II {Fruit fly (Drosophila | 100.0 | |
| d3bvua3 | 381 | Golgi alpha-mannosidase II {Fruit fly (Drosophila | 100.0 | |
| g1o7d.3 | 330 | Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax | 100.0 | |
| d3bvua1 | 111 | Golgi alpha-mannosidase II {Fruit fly (Drosophila | 99.94 | |
| g1o7d.1 | 95 | Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax | 99.94 | |
| d1k1xa3 | 310 | 4-alpha-glucanotransferase, N-terminal domain {Arc | 99.93 | |
| d2b5dx2 | 404 | Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 | 97.98 | |
| d1ufaa2 | 412 | Hypothetical protein TT1467, N-terminal domain {Th | 97.6 | |
| d1z7aa1 | 301 | Hypothetical protein PA1517 {Pseudomonas aeruginos | 95.01 | |
| d2c1ia1 | 196 | Peptidoglycan GlcNAc deacetylase C-terminal domain | 92.28 | |
| d2cc0a1 | 192 | Acetyl-xylan esterase {Streptomyces lividans [TaxI | 90.07 | |
| d2j13a1 | 235 | Putative polysaccharide deacetylase BA0424 {Bacill | 88.84 | |
| d1ny1a_ | 235 | Probable polysaccharide deacetylase PdaA {Bacillus | 87.13 |
| >d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
| >d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
| >d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|