Citrus Sinensis ID: 002239

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------95

MAASVPPGAPRQQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTAPSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHSFCA

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHccccEEEEcccccccccccccEEEccccccccccccccccccccEEEEccccEEEEccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEEEcccccccccEEEcccccccccccccccEEEcHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEEEcccccccccccccccccccEEEEEEEEccccccccEEEEEEEEEEEEccccEEEEEEEccccccccHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccHEEHcHccccccHHHHHHccccEEEEEcccccccccccccccccccccccEEccccHHcEccHHHHHccccEEEEEcccccccccHHHcccccccccccccccccHHcccEEEEEccHHHHcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccEEEEEEcccccccccEEEEccccccccccccccEEcHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHcccEEEEEEEccccEEHEEHcccccccccEEEEcccccccccHHHHHHHHHHHcccccccEEEEEEEccccEEEEcccccEEEcccccccccccccccEEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccc

maasvppgaprqqppppppnynpnlqqnpnslsdnfqnlnlnrpvsmpnsgprptpfaqspqfpvtapsppmsrpgppppgalsrpagtpqqsfppnvapvrpfgppvgqslpfgsrpppgsfpssmggggpvgvptsgvppssafpssgsltrpvgatpgarpfplasslpfssglnvapsgasdgvtsngpmafaasggprfppagsgaqqtrtppagppsmltsarspqqspsmrfppvqqspfsaapqnappfssappfsaapqsappfsaapqstppfsgapsfpapspqgppqvspfgahtwsaqpvgpsssipgsaqpsrmfgmppplqtqtmtnmppamgqtgapmpasskidpqqiprpvpsstvvlydtregnqanppppatseyivrdmgncsprymrctisqipctndlltTSGMQLALLvqplalphpseepiqivdfgdmgpvrcsrCKAYINPFMKFIDQGRRFICSlcgftdetprdyhcnlgpdgrrrdaddrpelcrgtvefvatkeymvrdpmpAVFFFLIDVSMNALQTGATAAACSAISQVIsdlpegprtmvgiatfdSTIHFYNLKRAlqqplmlivpdvedvytplqsdiivpvSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVlpsvgigalsareaegrsnissgekethkllqPADKTLKAMAIEFAEYQVCVDVFITTQtyvdiasisvipkttggqvyyyypfsalsdpaklyndlrwnitrpqgFEAVMRVRCSQGIQVQEYHGnfckriptdidlpaidcNKAIMVTLKhddklqdgsecaFQCALLYTTVygqrrirvttlslpctsnlsnlyrsadldTQFTCFMKQaaseipstplaNVREQMMNLCVNALVSYRKFCATvsssgqlilpealkllplytlgkyynvhsfca

maasvppgaprqqpppPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTAPSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTregnqanppppatseYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCnlgpdgrrrdaddrpelCRGTVefvatkeymvrDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEgrsnissgekethkllQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIasisvipkttggQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTtlslpctsnlsNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHSFCA

MAASVppgaprqqppppppnynpnlqqnpnSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTapsppmsrpgppppgalsrpagTPQQSFPPNVAPVRPFGPPVGQslpfgsrpppgsfpssmggggpvgvptsgvppssAFPSSGSLTRPVGATPGARpfplasslpfssGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVqqspfsaapqnappfssappfsaapqsappfsaapqstppfsgapsfpapspqgppqvspfgAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMqlallvqplalpHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLgpdgrrrdaddrpELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTaesafgaavkaaflalksTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQlilpealkllplytlGKYYNVHSFCA

**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNL*************ELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGAL***************************TLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHSFC*

*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIG*******************THKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEI**TP**NVREQMMNLCVNALVSYR*************LPEALKLLPLYTLGKYYNVHSFC*

***************PPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPV***************************SFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGV************TRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRF***********************************************************************************************VSPFGAHTWSA*************QPSRMFGMPPPLQTQTMTNMPPAMG*************PQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSA*************KETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHSFCA

*****************PPNY**************************************SPQFPVTAPSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQ*********P********GGGPV**PTS**************************************************************************************************************************************************GAPSFPA******PQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGA****SSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALS**************K**HKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHSFCA

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		948	2.2.26 [Sep-21-2011]
Q9M081		1080	Protein transport protein	yes	no	0.916	0.804	0.646	0.0
Q9M291		1096	Protein transport protein	no	no	0.686	0.593	0.737	0.0
P53992		1094	Protein transport protein	yes	no	0.879	0.762	0.354	1e-128
Q9SFU0		1038	Protein transport protein	no	no	0.561	0.512	0.413	1e-125
O95487		1268	Protein transport protein	no	no	0.551	0.412	0.388	1e-106
A6QNT8		1099	Protein transport protein	no	no	0.564	0.486	0.372	1e-104
Q3U2P1		1090	Protein transport protein	no	no	0.564	0.490	0.366	1e-104
O95486		1093	Protein transport protein	no	no	0.562	0.487	0.370	1e-104
A1CUC3		919	Protein transport protein	N/A	no	0.669	0.690	0.339	1e-97
Q9USS7		891	Uncharacterized protein C	yes	no	0.580	0.617	0.349	1e-96

>sp\|Q9M081\|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3	Back alignment and function desciption

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/964 (64%), Positives = 704/964 (73%), Gaps = 95/964 (9%)

Query: 1   MAASVPPGAPR--QQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPN--------- 49
           M A VPPGAPR   Q    PPN+ P  Q N N+L+DN QNL+LNRP  M           
Sbjct: 1   MVAPVPPGAPRPNSQQNSGPPNFYPGSQGNSNALADNMQNLSLNRPPPMMPGSGPRPPPP 60

Query: 50  --SGPRPTPFAQSPQF--PVTAPSPPMSRPGPPPPGALSRPAGTPQQS----FPPNVAPV 101
               P+P P  QSP +  P   PSP MSRPGPP    ++RP G P  S    F  NV   
Sbjct: 61  FGQSPQPFP-QQSPSYGAPQRGPSP-MSRPGPP--AGMARPGGPPPVSQPAGFQSNVPLN 116

Query: 102 RPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSG-SLTRPVGATP 160
           RP GPP  Q   FGSRP   S P     GGPV  P +    SS FP+ G S +   G  P
Sbjct: 117 RPTGPPSRQP-SFGSRP---SMP-----GGPVAQPAAS---SSGFPAFGPSGSVAAGPPP 164

Query: 161 GARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPR---FPPAGSGAQQTRTP 217
           G+RP    S  P  SG+++ PSG   G  SNG     + G PR   FP  G+     + P
Sbjct: 165 GSRPMAFGSPPPVGSGMSMPPSGMIGGPVSNGHQMVGSGGFPRGTQFP--GAAVTTPQAP 222

Query: 218 PAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFS--AAPQSAPP--F 273
              PPS          +P  R PP         P  +   S  PP +   AP   PP  F
Sbjct: 223 YVRPPS----------APYARTPP--------QPLGSHSLSGNPPLTPFTAPSMPPPATF 264

Query: 274 SAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPP 333
             AP   P  SG P        GPP          SAQ V P    PG  QP R +GM P
Sbjct: 265 PGAPHGRPAVSGLP-------YGPP----------SAQ-VAPPLGFPGQMQPPR-YGMGP 305

Query: 334 PLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATS 393
            L  Q+MTN+P AMGQ GA +P  S+IDP QIPRP  SS+  +++TR+ NQANPPPPATS
Sbjct: 306 -LPNQSMTNIPTAMGQPGATVPGPSRIDPNQIPRPGSSSSPTVFETRQSNQANPPPPATS 364

Query: 394 EYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGD 453
           +Y+VRD GNCSPRYMRCTI+QIPCT DLL+TSGMQLAL+VQPLAL HPSEEPIQ+VDFG+
Sbjct: 365 DYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQLALMVQPLALSHPSEEPIQVVDFGE 424

Query: 454 MGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL 513
            GPVRCSRCK YINPFMKFIDQGR+FIC+ CG+TDETPRDYHCNLGPDGRRRD D+RPEL
Sbjct: 425 GGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDETPRDYHCNLGPDGRRRDVDERPEL 484

Query: 514 CRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTM 573
           CRGTVEFVATKEYMVRDPMPAV+FFLIDVSMNA+QTGATAAAC+AI QV+SDLPEGPRT 
Sbjct: 485 CRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQTGATAAACNAIQQVLSDLPEGPRTF 544

Query: 574 VGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIP 633
           VGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTPL++D++V +SECRQHLELLL+SIP
Sbjct: 545 VGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLETDVVVQLSECRQHLELLLDSIP 604

Query: 634 SMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSG 693
           +MFQ ++  ESAFGAAVKAAFLA+KS GGKL+VFQS+L SVG+GALS+REAEGR+N+S+G
Sbjct: 605 TMFQESKIPESAFGAAVKAAFLAMKSKGGKLMVFQSILCSVGVGALSSREAEGRANMSAG 664

Query: 694 EKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753
           EKE HKLLQPADKTLK MAIEFAEYQVCVD+FITTQ YVD+ASISVIP+TTGGQVY YYP
Sbjct: 665 EKEAHKLLQPADKTLKTMAIEFAEYQVCVDIFITTQAYVDMASISVIPRTTGGQVYCYYP 724

Query: 754 FSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDC 813
           FSALSDP KLYNDL+WNITRPQGFEAVMRVRCSQGIQVQEY GNFCKRIPTDIDLPA   
Sbjct: 725 FSALSDPPKLYNDLKWNITRPQGFEAVMRVRCSQGIQVQEYSGNFCKRIPTDIDLPA--- 781

Query: 814 NKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLD 873
                    HDDKLQDG+ECAFQCALLYTT+YG+RRIRVTTLSL CT+ LSNL+R+ADLD
Sbjct: 782 ---------HDDKLQDGAECAFQCALLYTTIYGERRIRVTTLSLSCTNMLSNLFRAADLD 832

Query: 874 TQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLP 933
           +QF C +KQAA+EIPS  L  V+EQ  N C+NAL +YRKFCATV+SSGQLILPEALKL P
Sbjct: 833 SQFACMLKQAANEIPSKALPLVKEQATNSCINALYAYRKFCATVTSSGQLILPEALKLFP 892

Query: 934 LYTL 937
           LYTL
Sbjct: 893 LYTL 896

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9M291\|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3	Back alignment and function description

>sp\|P53992\|SC24C_HUMAN Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3	Back alignment and function description

>sp\|Q9SFU0\|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2	Back alignment and function description

>sp\|O95487\|SC24B_HUMAN Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2	Back alignment and function description

>sp\|A6QNT8\|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1	Back alignment and function description

>sp\|Q3U2P1\|SC24A_MOUSE Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1	Back alignment and function description

>sp\|O95486\|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2	Back alignment and function description

>sp\|A1CUC3\|SEC24_ASPCL Protein transport protein sec24 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=sec24 PE=3 SV=1	Back alignment and function description

>sp\|Q9USS7\|YNB3_SCHPO Uncharacterized protein C4.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4.03c PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		948
359493759		1124	PREDICTED: protein transport protein Sec	0.954	0.805	0.719	0.0
255542372		1094	Protein transport protein Sec24C, putati	0.947	0.820	0.738	0.0
224131342		1080	predicted protein [Populus trichocarpa]	0.932	0.818	0.715	0.0
255545386		1056	Protein transport protein Sec24C, putati	0.926	0.831	0.683	0.0
224123334		1103	predicted protein [Populus trichocarpa]	0.888	0.763	0.684	0.0
449458918		1105	PREDICTED: protein transport protein Sec	0.935	0.802	0.673	0.0
443609449		1092	Sec24-like transport protein [Arabidopsi	0.930	0.807	0.657	0.0
356534416		1085	PREDICTED: protein transport protein Sec	0.672	0.588	0.839	0.0
334187094		1080	sec24-like transport protein [Arabidopsi	0.916	0.804	0.646	0.0
7270168		1069	putative protein [Arabidopsis thaliana]	0.917	0.813	0.646	0.0

>gi\|359493759\|ref\|XP_002279640.2\| PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera] gi\|302143220\|emb\|CBI20515.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1306 bits (3381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 708/984 (71%), Positives = 789/984 (80%), Gaps = 79/984 (8%)

Query: 1   MAASVPPGAPR-QQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTP-FA 58
           MAA VPPGAPR    PPPPPNYNPN Q+ P+SL++N QNL +NRP S+PNS PRP P + 
Sbjct: 1   MAAPVPPGAPRATNTPPPPPNYNPNYQRTPDSLAENMQNLQINRPPSVPNSTPRPPPSYI 60

Query: 59  QSP----QFPVTAP--------SPPMSRPGPPP---PGALSRP----AGTPQQSFPPNVA 99
           QSP      P +AP          P+SRPGP P    G L+RP    +G PQ +FPPN+A
Sbjct: 61  QSPPSHSSAPYSAPQHSAPFPRGAPVSRPGPSPGPQSGVLARPGMAPSGPPQSTFPPNMA 120

Query: 100 PVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFP------------ 147
           P RP G P+ Q+LPFGSRP  GSFPS MGG     V TS   P SAF             
Sbjct: 121 PGRPSGYPISQALPFGSRPSTGSFPSPMGGQ----VTTSSGAPPSAFASSSAAPPSAFPA 176

Query: 148 ---SSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAAS---GG 201
              S+G +  PV A PG      ASS P S+G  + PS A  G TSNGP  FA++   GG
Sbjct: 177 SGFSAGPVIPPVAARPGV----FASS-PLSTGPIIPPSSAPGGPTSNGPPMFASAALQGG 231

Query: 202 PRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAP 261
           PR+P A +  Q   TP   PP+M+ S ++P Q P+MR      +   +   N PP    P
Sbjct: 232 PRYPSADNTMQ---TPVGHPPTMM-STQAPSQPPTMR------TLLGSTAPNVPP---GP 278

Query: 262 PFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQP--VGPSSSI 319
           P   AP +A PFSAAPQ  PP SG               SP+G  TW  QP  V P  +I
Sbjct: 279 PVQTAP-TAMPFSAAPQGVPPPSG---------------SPYGLQTWPMQPRQVAPPPTI 322

Query: 320 PGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDT 379
           PGS QP RMFGMPPP   Q+M  MPPAM QTGAP+   SKIDP QIPRP+P+++V+L++T
Sbjct: 323 PGSVQPPRMFGMPPPPPNQSMAAMPPAMSQTGAPLAGPSKIDPNQIPRPIPNTSVILHET 382

Query: 380 REGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALP 439
           R+GNQANPPPPATS+YIVRD GNCSPRYMRCTI+QIPCT DLLTTSGMQLALLVQPLALP
Sbjct: 383 RQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQLALLVQPLALP 442

Query: 440 HPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLG 499
           HPSEEPIQ+VDFG+ GPVRCSRCK YINPFMKFIDQGRRFIC+LCGFTDETPRDYHCNLG
Sbjct: 443 HPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTDETPRDYHCNLG 502

Query: 500 PDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAI 559
           PDGRRRDA++RPELCRGTVEFVA+KEYMVR+PMPAVFFFLIDVSMNA+QTGATAAACSAI
Sbjct: 503 PDGRRRDAEERPELCRGTVEFVASKEYMVREPMPAVFFFLIDVSMNAIQTGATAAACSAI 562

Query: 560 SQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVS 619
           +QVI+DLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTPLQ+D+IV +S
Sbjct: 563 TQVITDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLQTDVIVQLS 622

Query: 620 ECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGAL 679
           ECRQHLELLLE+IP+MFQNNRTAESAFGAA++AAFLA+KSTGGKLLVFQSVLPSVGIGAL
Sbjct: 623 ECRQHLELLLENIPTMFQNNRTAESAFGAAIQAAFLAMKSTGGKLLVFQSVLPSVGIGAL 682

Query: 680 SAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISV 739
           SAREAEGR+NI++GEKE HKLLQPADKTLK MAIEFAEYQVCVDVFITTQTYVDIASI+V
Sbjct: 683 SAREAEGRTNITAGEKEAHKLLQPADKTLKTMAIEFAEYQVCVDVFITTQTYVDIASIAV 742

Query: 740 IPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFC 799
           IP+TTGGQVYYYYPFSALSDPAKLYNDLRWNIT+PQGFEAVMRVRCSQG+QVQEY GNFC
Sbjct: 743 IPRTTGGQVYYYYPFSALSDPAKLYNDLRWNITKPQGFEAVMRVRCSQGLQVQEYSGNFC 802

Query: 800 KRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859
           +RIPTD+DLP IDC+KAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC
Sbjct: 803 RRIPTDVDLPGIDCDKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 862

Query: 860 TSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSS 919
           TS LSNL+RSADLDTQF CF+KQAASEIPSTPL+ VREQ+ NLC+N L SYRKFCATVSS
Sbjct: 863 TSMLSNLFRSADLDTQFACFLKQAASEIPSTPLSQVREQVTNLCINILHSYRKFCATVSS 922

Query: 920 SGQLILPEALKLLPLYTLGKYYNV 943
           SGQLILPEALKLLPLYTL    ++
Sbjct: 923 SGQLILPEALKLLPLYTLALIKSI 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255542372\|ref\|XP_002512249.1\| Protein transport protein Sec24C, putative [Ricinus communis] gi\|223548210\|gb\|EEF49701.1\| Protein transport protein Sec24C, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224131342\|ref\|XP_002328515.1\| predicted protein [Populus trichocarpa] gi\|222838230\|gb\|EEE76595.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255545386\|ref\|XP_002513753.1\| Protein transport protein Sec24C, putative [Ricinus communis] gi\|223546839\|gb\|EEF48336.1\| Protein transport protein Sec24C, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224123334\|ref\|XP_002319053.1\| predicted protein [Populus trichocarpa] gi\|222857429\|gb\|EEE94976.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449458918\|ref\|XP_004147193.1\| PREDICTED: protein transport protein Sec24-like At4g32640-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|443609449\|dbj\|BAM76809.1\| Sec24-like transport protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356534416\|ref\|XP_003535751.1\| PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max]	Back alignment and taxonomy information

>gi|334187094|ref|NP_194990.5| sec24-like transport protein [Arabidopsis thaliana] gi|334187096|ref|NP_001119101.5| sec24-like transport protein [Arabidopsis thaliana] gi|347595780|sp|Q9M081.3|SC24B_ARATH RecName: Full=Protein transport protein Sec24-like At4g32640 gi|332660694|gb|AEE86094.1| sec24-like transport protein [Arabidopsis thaliana] gi|332660695|gb|AEE86095.1| sec24-like transport protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|7270168\|emb\|CAB79981.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		948
TAIR\|locus:2100202		1096	CEF "AT3G44340" [Arabidopsis t	0.631	0.546	0.716	9.7e-256
ZFIN\|ZDB-GENE-030131-4487		1241	sec24c "SEC24 family, member C	0.610	0.466	0.375	9.3e-117
UNIPROTKB\|G5EA31		1042	SEC24C "SEC24 related gene fam	0.601	0.547	0.363	2.9e-111
UNIPROTKB\|P53992		1094	SEC24C "Protein transport prot	0.601	0.521	0.363	2.9e-111
RGD\|1597739		1027	Sec24c "SEC24 family, member C	0.628	0.580	0.357	1e-107
UNIPROTKB\|E1BIU0		1094	SEC24C "Uncharacterized protei	0.631	0.547	0.356	3.5e-107
FB\|FBgn0262126		1193	gho "ghost" [Drosophila melano	0.624	0.496	0.344	1e-105
UNIPROTKB\|E2RE90		1096	SEC24C "Uncharacterized protei	0.636	0.550	0.358	2.7e-105
TAIR\|locus:2098545		1038	ERMO2 "AT3G07100" [Arabidopsis	0.537	0.491	0.371	5.6e-105
UNIPROTKB\|J9JHK6		1119	SEC24C "Uncharacterized protei	0.628	0.532	0.351	2.4e-104

TAIR\|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2292 (811.9 bits), Expect = 9.7e-256, Sum P(4) = 9.7e-256
 Identities = 439/613 (71%), Positives = 499/613 (81%)

Query:   312 PVG-PSSSIPGS-AQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPV 369
             P G P   +P +   P  ++GM P +Q Q+MT++        +P    SKID  QIPRP 
Sbjct:   296 PYGAPPQQLPSAPGTPGSIYGMGP-MQNQSMTSV-------SSP----SKIDLNQIPRPG 343

Query:   370 PSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMXX 429
              SS+ ++Y+TR  N+ANPPPP T +YI RD GN SPRYMRCTI+QIPCT DLL+TSGM  
Sbjct:   344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query:   430 XXXXXXXXXXHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDE 489
                       HPSEEPIQ+VDFG+ GPVRCSRCK Y+NPFMKFIDQGR+FIC+LCG+TDE
Sbjct:   404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 463

Query:   490 TPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQT 549
             TPRDY CNL             ELCRGTV+FVATKEYMVRDPMPAV+FFLIDVSMNA+QT
Sbjct:   464 TPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 523

Query:   550 GATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTP 609
             GATAAACSAI QV+SDLPEGPRT VGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTP
Sbjct:   524 GATAAACSAIQQVLSDLPEGPRTFVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTP 583

Query:   610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTXXXXXXXXXXXXXXXXXXTGGKLLVFQS 669
             L++D+IV +SECRQHLE+LLESIP+MFQ +++                  TGGKL+VFQS
Sbjct:   584 LETDVIVQLSECRQHLEILLESIPTMFQESKSPESAFGAAVKAAFLAMKSTGGKLMVFQS 643

Query:   670 VLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQ 729
             VLPSVGIGALS+REA+GR+N S+GEKE HKLLQPADKTL+ MAIEFAEYQVCVD+FITTQ
Sbjct:   644 VLPSVGIGALSSREADGRANASAGEKEAHKLLQPADKTLRTMAIEFAEYQVCVDLFITTQ 703

Query:   730 TYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGI 789
              YVD+ASIS IP+TTGGQVY YYPFSALSDP KLYNDLRWNITRPQGFEAVMRVRCSQGI
Sbjct:   704 AYVDMASISEIPRTTGGQVYCYYPFSALSDPPKLYNDLRWNITRPQGFEAVMRVRCSQGI 763

Query:   790 QVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRR 849
             QVQEY GNFCKRIPTDIDLPAIDC+KAIMVTLKHDDKLQDG+EC FQCALLYTT+ G+RR
Sbjct:   764 QVQEYSGNFCKRIPTDIDLPAIDCDKAIMVTLKHDDKLQDGAECGFQCALLYTTISGERR 823

Query:   850 IRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVS 909
             IRV  LS+PCT+ LSNL+RSADLD+QF C +KQAA+EIPS  L  V+EQ  N C+  L S
Sbjct:   824 IRVLNLSIPCTNMLSNLFRSADLDSQFACMLKQAANEIPSKALPLVKEQATNDCITILHS 883

Query:   910 YRKFCATVSSSGQ 922
             YRKFCATV+S+GQ
Sbjct:   884 YRKFCATVTSTGQ 896

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

ZFIN\|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|G5EA31 SEC24C "SEC24 related gene family, member C (S. cerevisiae), isoform CRA_b" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|P53992 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1597739 Sec24c "SEC24 family, member C (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BIU0 SEC24C "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

FB\|FBgn0262126 gho "ghost" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RE90 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

TAIR\|locus:2098545 ERMO2 "AT3G07100" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|J9JHK6 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M081	SC24B_ARATH	No assigned EC number	0.6462	0.9166	0.8046	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		948
COG5028		861	COG5028, COG5028, Vesicle coat complex COPII, subu	1e-134
cd01479		244	cd01479, Sec24-like, Sec24-like: Protein and membr	1e-103
pfam04811		241	pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain	1e-93
cd01468		239	cd01468, trunk_domain, trunk domain	2e-85
PTZ00395		1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	1e-34
pfam08033		86	pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom	7e-33
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-20
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-19
pfam04810		39	pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger	4e-15
pfam04815		103	pfam04815, Sec23_helical, Sec23/Sec24 helical doma	3e-14
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-14
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-12
PLN00162		761	PLN00162, PLN00162, transport protein sec23; Provi	1e-12
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-12
PTZ00395		1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	3e-12
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-11
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-11
COG5047		755	COG5047, SEC23, Vesicle coat complex COPII, subuni	3e-10
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-09
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	2e-08
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-08
PHA03378		991	PHA03378, PHA03378, EBNA-3B; Provisional	5e-07
cd01478		267	cd01478, Sec23-like, Sec23-like: Protein and membr	7e-07
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-07
PRK07003		830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-06
PRK07003		830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-06
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-06
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-06
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-06
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-06
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-05
PRK14951		618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK07994		647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-05
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-05
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-05
pfam09606		768	pfam09606, Med15, ARC105 or Med15 subunit of Media	5e-05
pfam04652		315	pfam04652, DUF605, Vta1 like	5e-05
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	8e-05
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	9e-05
PRK14971		614	PRK14971, PRK14971, DNA polymerase III subunits ga	9e-05
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	1e-04
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PRK07994		647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PRK14959		624	PRK14959, PRK14959, DNA polymerase III subunits ga	2e-04
PRK12270		1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PRK14951		618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-04
pfam07223		357	pfam07223, DUF1421, Protein of unknown function (D	4e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-04
PRK07994		647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-04
PRK14971		614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-04
PRK14086		617	PRK14086, dnaA, chromosomal replication initiation	5e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PRK03427		333	PRK03427, PRK03427, cell division protein ZipA; Pr	9e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
PHA03378		991	PHA03378, PHA03378, EBNA-3B; Provisional	0.002
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.002
pfam04652		315	pfam04652, DUF605, Vta1 like	0.002
pfam04652		315	pfam04652, DUF605, Vta1 like	0.002
PRK14971		614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.002
PRK14086		617	PRK14086, dnaA, chromosomal replication initiation	0.002
PHA03378		991	PHA03378, PHA03378, EBNA-3B; Provisional	0.003
pfam09606		768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.003
PRK14086		617	PRK14086, dnaA, chromosomal replication initiation	0.003
pfam07271		279	pfam07271, Cytadhesin_P30, Cytadhesin P30/P32	0.003
PRK14950		585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.003
PRK14971		614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.004
PRK14971		614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.004
PRK14959		624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.004
PRK10263		1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.004
PRK10263		1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.004

>gnl\|CDD\|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]	Back alignment and domain information

 Score =  424 bits (1091), Expect = e-134
 Identities = 244/680 (35%), Positives = 364/680 (53%), Gaps = 41/680 (6%)

Query: 268 QSAPPFSA-APQSTPPFSGAPSFPAPSPQGPPQVSPFGA---HTWSAQPVGPSSSIPGSA 323
           +SA P  A A  S       P    P  Q   +     A   H   A    PS   P + 
Sbjct: 25  KSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQAATAMHNTGANNPAPSVMSP-AF 83

Query: 324 QPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGN 383
           Q  + F  P        T   P       P+      + Q  P         + D     
Sbjct: 84  QSQQKFSSPYGGSMADGTAPKPTN-----PLVPVDLFEDQPPP---------ISDLFLPP 129

Query: 384 QANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSE 443
               PP  T+     +  NCSP+Y+R T+  IP TNDLL  S +   L+++P    +P E
Sbjct: 130 PPIVPPLTTNFVGS-EQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEE 188

Query: 444 EPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGR 503
           +P+ +V+  D   VRC RC++YINPF++FI+QGR++ C++C   ++ P  +    GP+  
Sbjct: 189 DPVPLVE--DGSIVRCRRCRSYINPFVQFIEQGRKWRCNICRSKNDVPEGFDNPSGPNDP 246

Query: 504 RRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVI 563
           R D   RPEL  G V+F+A KEY +R P P V+ FLIDVS  A++ G   AA  AI + +
Sbjct: 247 RSDRYSRPELKSGVVDFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENL 306

Query: 564 SDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS-DIIVPVSEC 621
             +P   PRT + I  FDS++HF+ L   L +  MLIV D+++ + P  S   ++P+  C
Sbjct: 307 DQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQ-MLIVSDLDEPFLPFPSGLFVLPLKSC 365

Query: 622 RQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSA 681
           +Q +E LL+ +P +FQ+N++ ++A G A+KAA   +  TGGK++VF S LP++GIG L  
Sbjct: 366 KQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNMGIGKLQL 425

Query: 682 REAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIP 741
           RE          +KE   LL   D   K  AIE ++  + VD+F+T++ Y+D+A++S + 
Sbjct: 426 RE----------DKE-SSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDYIDVATLSHLC 474

Query: 742 KTTGGQVYYYYPFSA--LSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFC 799
           + TGGQ Y+Y  FSA   +D  KL NDL  +++   G+EAVMRVRCS G++V  ++GNF 
Sbjct: 475 RYTGGQTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFF 534

Query: 800 KRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859
            R         +  + +++V    D+KL   S+  FQ ALLYT   G+RRIRV  LSLP 
Sbjct: 535 NRSSDLCAFSTMPRDTSLLVEFSIDEKLM-TSDVYFQVALLYTLNDGERRIRVVNLSLPT 593

Query: 860 TSNLSNLYRSADLDTQFTCFM-KQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVS 918
           +S++  +Y SAD      C + K+A+++  ++ L   R  +    V+ L +Y+K     +
Sbjct: 594 SSSIREVYASADQLA-IACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSN 652

Query: 919 SSGQLILPEALKLLPLYTLG 938
           +S QL LP  LKLLPL  L 
Sbjct: 653 TSTQLPLPANLKLLPLLMLA 672

Length = 861

>gnl\|CDD\|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles	Back alignment and domain information

>gnl\|CDD\|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain	Back alignment and domain information

>gnl\|CDD\|238745 cd01468, trunk_domain, trunk domain	Back alignment and domain information

>gnl\|CDD\|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional	Back alignment and domain information

>gnl\|CDD\|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger	Back alignment and domain information

>gnl\|CDD\|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|215083 PLN00162, PLN00162, transport protein sec23; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|223065 PHA03378, PHA03378, EBNA-3B; Provisional	Back alignment and domain information

>gnl\|CDD\|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|223065 PHA03378, PHA03378, EBNA-3B; Provisional	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223065 PHA03378, PHA03378, EBNA-3B; Provisional	Back alignment and domain information

>gnl\|CDD\|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	Back alignment and domain information

>gnl\|CDD\|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32	Back alignment and domain information

>gnl\|CDD\|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional	Back alignment and domain information

>gnl\|CDD\|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		948
KOG1984		1007	consensus Vesicle coat complex COPII, subunit SFB3	100.0
KOG1985		887	consensus Vesicle coat complex COPII, subunit SEC2	100.0
COG5028		861	Vesicle coat complex COPII, subunit SEC24/subunit	100.0
PTZ00395		1560	Sec24-related protein; Provisional	100.0
PLN00162		761	transport protein sec23; Provisional	100.0
KOG1986		745	consensus Vesicle coat complex COPII, subunit SEC2	100.0
COG5047		755	SEC23 Vesicle coat complex COPII, subunit SEC23 [I	100.0
cd01479		244	Sec24-like Sec24-like: Protein and membrane traffi	100.0
cd01468		239	trunk_domain trunk domain. COPII-coated vesicles c	100.0
PF04811		243	Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I	100.0
cd01478		267	Sec23-like Sec23-like: Protein and membrane traffi	100.0
PF08033		96	Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP	99.84
PF04815		103	Sec23_helical: Sec23/Sec24 helical domain; InterPr	99.66
PF04810		40	zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro:	99.52
PRK13685		326	hypothetical protein; Provisional	98.81
cd01453		183	vWA_transcription_factor_IIH_type Transcription fa	98.8
cd01463		190	vWA_VGCC_like VWA Voltage gated Calcium channel li	98.71
cd01467		180	vWA_BatA_type VWA BatA type: Von Willebrand factor	98.67
cd01451		178	vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch	98.67
cd01465		170	vWA_subgroup VWA subgroup: Von Willebrand factor t	98.66
cd01456		206	vWA_ywmD_type VWA ywmD type:Von Willebrand factor	98.63
cd01466		155	vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact	98.63
PF13519		172	VWA_2: von Willebrand factor type A domain; PDB: 3	98.54
TIGR03788		596	marine_srt_targ marine proteobacterial sortase tar	98.52
TIGR00868		863	hCaCC calcium-activated chloride channel protein 1	98.52
cd01474		185	vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi	98.45
cd01472		164	vWA_collagen von Willebrand factor (vWF) type A do	98.39
TIGR03436		296	acidobact_VWFA VWFA-related Acidobacterial domain.	98.38
cd01461		171	vWA_interalpha_trypsin_inhibitor vWA_interalpha tr	98.38
cd01470		198	vWA_complement_factors Complement factors B and C2	98.31
cd01452		187	VWA_26S_proteasome_subunit 26S proteasome plays a	98.23
PF13768		155	VWA_3: von Willebrand factor type A domain	98.22
cd01480		186	vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI	98.16
cd01450		161	vWFA_subfamily_ECM Von Willebrand factor type A (v	98.12
PTZ00441		576	sporozoite surface protein 2 (SSP2); Provisional	98.11
cd01475		224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	98.07
TIGR02031		589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.05
cd01471		186	vWA_micronemal_protein Micronemal proteins: The To	98.02
cd01469		177	vWA_integrins_alpha_subunit Integrins are a class	97.99
cd01482		164	vWA_collagen_alphaI-XII-like Collagen: The extrace	97.97
PRK13406		584	bchD magnesium chelatase subunit D; Provisional	97.96
PF00092		178	VWA: von Willebrand factor type A domain; InterPro	97.94
cd00198		161	vWFA Von Willebrand factor type A (vWA) domain was	97.94
TIGR02442		633	Cob-chelat-sub cobaltochelatase subunit. A number	97.93
cd01477		193	vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand	97.9
cd01473		192	vWA_CTRP CTRP for CS protein-TRAP-related protein:	97.9
smart00327		177	VWA von Willebrand factor (vWF) type A domain. VWA	97.86
COG1240		261	ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis	97.84
cd01481		165	vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V	97.75
cd01476		163	VWA_integrin_invertebrates VWA_integrin (invertebr	97.64
cd01464		176	vWA_subfamily VWA subfamily: Von Willebrand factor	97.52
cd01458		218	vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter	97.43
cd01454		174	vWA_norD_type norD type: Denitrifying bacteria con	97.36
PF04056		193	Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro	97.26
COG4245		207	TerY Uncharacterized protein encoded in toxicity p	97.06
PHA03247		3151	large tegument protein UL36; Provisional	96.93
cd01462		152	VWA_YIEM_type VWA YIEM type: Von Willebrand factor	96.87
KOG2884		259	consensus 26S proteasome regulatory complex, subun	96.84
PHA03247		3151	large tegument protein UL36; Provisional	96.64
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.28
TIGR00578		584	ku70 ATP-dependent DNA helicase ii, 70 kDa subunit	96.16
cd01457		199	vWA_ORF176_type VWA ORF176 type: Von Willebrand fa	95.79
cd01460		266	vWA_midasin VWA_Midasin: Midasin is a member of th	95.78
COG5148		243	RPN10 26S proteasome regulatory complex, subunit R	95.08
PF03731		224	Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte	94.68
cd01455		191	vWA_F11C1-5a_type Von Willebrand factor type A (vW	94.39
PF03850		276	Tfb4: Transcription factor Tfb4; InterPro: IPR0046	93.96
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	93.94
TIGR00627		279	tfb4 transcription factor tfb4. This family is bas	93.63
KOG2807		378	consensus RNA polymerase II transcription initiati	93.51
PF00362		426	Integrin_beta: Integrin, beta chain; InterPro: IPR	93.04
COG2425		437	Uncharacterized protein containing a von Willebran	92.9
PRK10997		487	yieM hypothetical protein; Provisional	92.36
KOG1984		1007	consensus Vesicle coat complex COPII, subunit SFB3	91.62
smart00187		423	INB Integrin beta subunits (N-terminal portion of	89.88
KOG3768		888	consensus DEAD box RNA helicase [General function	89.5
KOG2487		314	consensus RNA polymerase II transcription initiati	87.09
COG4867		652	Uncharacterized protein with a von Willebrand fact	86.26
KOG2353		1104	consensus L-type voltage-dependent Ca2+ channel, a	85.7
PF06707		205	DUF1194: Protein of unknown function (DUF1194); In	85.34

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.1e-162  Score=1400.60  Aligned_cols=588  Identities=55%  Similarity=0.939  Sum_probs=569.6

Q ss_pred             CCCCCCCCCCCCCCCcCCCcceeccCC-CCCCCCCCCCCCceeecCCCCCCCCceeeeccccCCChhhhhhcCCccEEEE
Q 002239          355 PASSKIDPQQIPRPVPSSTVVLYDTRE-GNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLV  433 (948)
Q Consensus       355 ~~~~~idp~~iP~P~~~~~~~~~~t~~-~~~~~~PP~~tt~~~~~D~gN~sP~fiR~T~n~iP~t~~ll~~~~LPLgivV  433 (948)
                      ..++|||+++||+++++.+.+.+.++. .....+||++||+|++.|+|||||||||||+|+||+|.|+++.++||||+||
T Consensus       236 ~~~~rldp~~iPs~~qv~~~d~~~~r~~~~~~~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvI  315 (1007)
T KOG1984|consen  236 PPPQRLDPNAIPSPPQVSIEDDSSFRSTDTRAQPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVI  315 (1007)
T ss_pred             CccccCChhhCCCchhcccchhhhhhcCCccCCCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcceeEe
Confidence            356899999999999886555555554 3344689999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCceecccCCCCCccCCCCCceeccCceEecCCCeEEEccCCCCCCCCcccccCCCCCCCCCCCCCCCCc
Q 002239          434 QPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL  513 (948)
Q Consensus       434 qPfa~~~~~e~pVPvvd~g~~~pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL  513 (948)
                      +||+.+++.|+++++||+++.+++||+||||||||||+|+++||+|+||||+.+|+++++||++|+++|||+|+++||||
T Consensus       316 qPfa~l~p~E~~~~vVd~g~sgPvRC~RCkaYinPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL  395 (1007)
T KOG1984|consen  316 QPFATLTPNEAPVPVVDLGESGPVRCNRCKAYINPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPEL  395 (1007)
T ss_pred             cccccCCcccCCCceecCCCCCCcchhhhhhhcCcceEEecCCceEEecCCCccccCChhhcccCCCcccccccccCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccEEEEeccccccC--CCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCC-CCCCceEEEEEeCCeEEEEecCc
Q 002239          514 CRGTVEFVATKEYMVR--DPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFYNLKR  590 (948)
Q Consensus       514 ~~gtVEfvap~eY~~R--~p~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP-~~~rtrVGiITFds~VhfynL~~  590 (948)
                      ++|+|||+|+++||++  ++++++|||+||||++++++|++.++|++|+++|+.|+ ++++++|||||||++|||||+++
T Consensus       396 ~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s  475 (1007)
T KOG1984|consen  396 CLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSS  475 (1007)
T ss_pred             cccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCc
Confidence            9999999999999997  79999999999999999999999999999999999999 67899999999999999999999


Q ss_pred             CCCCceEeeccCccccccCccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhc-CCEEEEEec
Q 002239          591 ALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-GGKLLVFQS  669 (948)
Q Consensus       591 ~l~qpqmlVvsDldd~FvPl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~-GGkIivF~s  669 (948)
                      +++|++|+||+|++|+|+|+.++|||+..||+..|+.|||+|+.||.+.+.+++|+|+||++|.++||.. ||||+||++
T Consensus       476 ~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~gGKl~vF~s  555 (1007)
T KOG1984|consen  476 NLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAADGGKLFVFHS  555 (1007)
T ss_pred             cccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccCCceEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987 999999999


Q ss_pred             cCCCCCcc-cccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceE
Q 002239          670 VLPSVGIG-ALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQV  748 (948)
Q Consensus       670 g~Pt~GpG-~L~~red~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v  748 (948)
                      .+||+|.| +|+.|+|..    +++++||++|+.+++++|++||++|++.|||||||++...|+|+|+|+.+++.|||++
T Consensus       556 ~Lpt~g~g~kl~~r~D~~----l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~v  631 (1007)
T KOG1984|consen  556 VLPTAGAGGKLSNRDDRR----LIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAYVDVATLGVVPALTGGQV  631 (1007)
T ss_pred             ccccccCcccccccchhh----hhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccceeeeeeecccccccCcee
Confidence            99999976 898888766    8899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCchhhHHHHHHHHhccCCccccceeEEEeCCCceEeeeecccccCCCCceeecCCCCCceEEEEEEecCCCC
Q 002239          749 YYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQ  828 (948)
Q Consensus       749 ~~y~~F~~~~d~~kL~~dL~r~ltr~~g~da~mrVR~S~GL~V~~~~Gnf~~rst~~~~lp~id~dtSia~el~~d~~L~  828 (948)
                      |+|.+|+++.|..+|.+||+|++++++||+|+||||||+||++.+|||||++++++|++|+.+|+||+++++|+|||+|+
T Consensus       632 y~Y~~F~a~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq  711 (1007)
T KOG1984|consen  632 YKYYPFQALTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQ  711 (1007)
T ss_pred             EEecchhhcccHHHHHHHHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEecccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEEEEEecCCcEEEEEEcCcccccCCHhHHHhhCCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 002239          829 DGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALV  908 (948)
Q Consensus       829 ~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~lpVts~l~~vf~saD~eAi~~llaK~a~~~~~~~~l~daR~~L~~~lv~iL~  908 (948)
                      ++..++||+|||||+.+|||||||||++++|++++.|+||++|.|+++++|+|.|+..+.++.++++|+.|+++|++||+
T Consensus       712 ~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL~  791 (1007)
T KOG1984|consen  712 DGSDVHFQTALLYTTIDGQRRLRVLNLSLAVTSQLSELYRSADTDPLIAIMAKQAAKAILDKPLKEVREQLVSQCAQILA  791 (1007)
T ss_pred             CCcceeEEEEEEEeccCCceeEEEEecchhhhhhHHHHHHhcCccHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCceecchhcchHHHHHHHHhcCcccc
Q 002239          909 SYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHSF  946 (948)
Q Consensus       909 ~YRk~ca~~~s~gqLiLPesLKlLPlyilaLlKs~~~~  946 (948)
                      +|||+|++.+++|||||||+||+||+|++||+||.++-
T Consensus       792 ~YRk~cas~~ssgQLILPeslKLlPly~la~lKs~~l~  829 (1007)
T KOG1984|consen  792 SYRKNCASPASSGQLILPESLKLLPLYMLALLKSSALR  829 (1007)
T ss_pred             HHHHhhcCCCCcccEechhhhHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999998863

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]	Back alignment and domain information

>PTZ00395 Sec24-related protein; Provisional	Back alignment and domain information

>PLN00162 transport protein sec23; Provisional	Back alignment and domain information

>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]	Back alignment and domain information

>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles	Back alignment and domain information

>cd01468 trunk_domain trunk domain	Back alignment and domain information

>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []	Back alignment and domain information

>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles	Back alignment and domain information

>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []	Back alignment and domain information

>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []	Back alignment and domain information

>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PRK13685 hypothetical protein; Provisional	Back alignment and domain information

>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme	Back alignment and domain information

>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta	Back alignment and domain information

>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto)	Back alignment and domain information

>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A	Back alignment and domain information

>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein	Back alignment and domain information

>TIGR00868 hCaCC calcium-activated chloride channel protein 1	Back alignment and domain information

>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax	Back alignment and domain information

>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins	Back alignment and domain information

>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain	Back alignment and domain information

>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin)	Back alignment and domain information

>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation	Back alignment and domain information

>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins	Back alignment and domain information

>PF13768 VWA_3: von Willebrand factor type A domain	Back alignment and domain information

>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions	Back alignment and domain information

>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional	Back alignment and domain information

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity	Back alignment and domain information

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D	Back alignment and domain information

>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell	Back alignment and domain information

>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration	Back alignment and domain information

>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions	Back alignment and domain information

>PRK13406 bchD magnesium chelatase subunit D; Provisional	Back alignment and domain information

>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma	Back alignment and domain information

>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit	Back alignment and domain information

>cd01477 vWA_F09G8-8_type VWA F09G8	Back alignment and domain information

>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology	Back alignment and domain information

>smart00327 VWA von Willebrand factor (vWF) type A domain	Back alignment and domain information

>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]	Back alignment and domain information

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions	Back alignment and domain information

>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions	Back alignment and domain information

>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01458 vWA_ku Ku70/Ku80 N-terminal domain	Back alignment and domain information

>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases	Back alignment and domain information

>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex	Back alignment and domain information

>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]	Back alignment and domain information

>PHA03247 large tegument protein UL36; Provisional	Back alignment and domain information

>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA03247 large tegument protein UL36; Provisional	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70)	Back alignment and domain information

>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family	Back alignment and domain information

>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway	Back alignment and domain information

>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>TIGR00627 tfb4 transcription factor tfb4	Back alignment and domain information

>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]	Back alignment and domain information

>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>PRK10997 yieM hypothetical protein; Provisional	Back alignment and domain information

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region)	Back alignment and domain information

>KOG3768 consensus DEAD box RNA helicase [General function prediction only]	Back alignment and domain information

>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length	Back alignment and domain information

Homologous Structure Templates