Citrus Sinensis ID: 002245

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------
MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAEDSPPGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSWPSISSESSKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQKSRAPRPLMARLHFPASKLVKARNKNKP
ccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEcccccccHHHHcccccccccccccccEEEcccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccccHHHHHccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHcccHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHcccccHHHHHccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEEccccccccccccccHHHcccccEEEEEcccccHHcccccHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHccccc
ccccHccccccccccccccccEEEEEccEEEEEccccccHcHHcccccccccccccccHHHHHccccccccccccEEcccccccHHHHccccccccHHHcccccccccccccccccccccccccEcccccccEEcccccccHHHHcccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHcccccccccccHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHcHccHHHHHHHHHHHHHcccEEEcccccccccccHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHcccccccccEEEcHHHHHHHHHHHHHHccccccccHHHHHEEEcccHccccccccccccHcccccEEEEcccccHHHcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccHHHccccEEEEEEEEEcccccccccccccEEEEEEEEEEccccccccccccHHHHHccccEEEEEcccccHHHccccHHHHHHHHHccEEEEEcccccccccccHHHHcccccHHcccccccccc
mslaarfplksnkrtcnidgtnilveepevcicaneSIQWHEllrhpgssqssitpheptehqrvremsgvgktslpephgigleeeiissqdslsstilqsnggirscsgsnseaedsppgckldngsanfqqvgnatLFQDFYscindsslfqeGYHRfkqaedggnfqqesglesidnlgssltFTQLlnfnspqnqvgfssdyephmtSYSELLEaegseiyngecsswpsissesskakNESYARAQqpaedigetmvqqnglstpekmlsaspyvllkkptmqqpnasqtrsppkydqsccdiyqherrtfqcesISIAEQMhhtdlakeqnvpsgsmlAEKTRNLGDDISVAnklsdnkliepnsVEQVLSAHkvydetnpniskskkrkadgekknaIDWESLRKEVQrnsgkqersrdrmdSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHgsidlewlrdvppdkaKDYLLSIRGLGLKSVECVRLLTlhhlafpvdtnvgriavrlgwvplqplpeslqlHLLELYPVLESIQKYLWprlckldqRTLYELHYQLITFGKVfctkskpncnacpmrgecRHFASAFASarlalpgpeeksivsstmptmaernpsvvinpmplpspeksSLAEVRREIgkcepiieepatpeqecteitesdiedafyedpdeiptiKLNIEEFTVNLQSYMQEKMELQECDMSKALvalnpdaasipapklknvsrlrtehqvyelpdshpllegmdrrepddpspyllaiwtpgetansiqlpesrcrskesgklcdektcfscnsmretnsqtvrgtllipcrtamrgsfplngtyfqvnevfadhdsslnpidvprewlwnlprrmvyfGTSVSSIFKGLstegiqfcfwkgfvcvrgfdqksraprplmarlhfpasklvkarnknkp
mslaarfplksnkrtcnidgtniLVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAEDSPPGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSWPSISSESSKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQqpnasqtrsppkyDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKlsdnkliepNSVEQVLSahkvydetnpniskskkrkadgekknaidweslrkevqrnsgkqersrdrmdsldyEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGsidlewlrdvppDKAKDYLLSIRGLGLKSVECVRLLTLHHlafpvdtnVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNpsvvinpmplpspEKSSLAEVRREIGKcepiieepatpeqecTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPdaasipapklknvsrlRTEHQVyelpdshpllegmDRREPDDPSPYLLAIWTPGetansiqlpesrcrskesgklcDEKTCFscnsmretnsqtvrgTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQksraprplmarlhfpasklvkarnknkp
MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAEDSPPGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECsswpsissessKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVplqplpeslqlhllelypVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECrhfasafasarlalPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQKSRAPRPLMARLHFPASKLVKARNKNKP
*************RTCNIDGTNILVEEPEVCICANESIQWHELL***************************************************************************************FQQVGNATLFQDFYSCINDSSLFQEGYHRF***********************SLTFTQLLNF**************************************************************************************************************SCCDIYQHERRTFQCESISI*************************************************************************************************************YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR*************************************************************************EDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECD***ALVA************************************************YLLAIWTP************************EKTCFSCNSM****SQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFD*****************************
*SLAARF******************EEPEVCICANESIQ******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF**********************************************************CEPIIEEPATPE*****I*ESDIEDAFYEDPDEIPTIKLNIEEFTVNLQS***************ALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPG***********************EKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQKSRAPRPLMARL****************
MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANESIQWHELLRH************************VGKTSLPEPHGIGLEEEIISSQDSLSSTILQSN******************GCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGEC*************************EDIGETMVQQNGLSTPEKMLSASPYVLLKKP*****************QSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNP***************NAIDWESLRK****************DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPS*********RREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLP************CDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQKSRAPRPLMARLHFPASKL*********
******************DGTNILVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPTEHQR*********************************************************GCKLDNGSANFQQVGNATLFQDFYSCINDS**********************************LTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSW************************************************************************************************************************************KLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALP******************NPSV*INPMPLP*************IGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGE********************C**KTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQKSRAPRPLMARLHFPA************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAEDSPPGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSWPSISSESSKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQKSRAPRPLMARLHFPASKLVKARNKNKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query947 2.2.26 [Sep-21-2011]
Q8LK561987 Transcriptional activator no no 0.964 0.459 0.566 0.0
Q9SJQ61393 Protein ROS1 OS=Arabidops no no 0.570 0.387 0.698 0.0
Q9SR661332 DEMETER-like protein 2 OS no no 0.550 0.391 0.625 0.0
O494981044 DEMETER-like protein 3 OS no no 0.572 0.519 0.483 1e-147
Q9WYK0213 Endonuclease III OS=Therm no no 0.147 0.657 0.275 1e-06
Q8SRB8238 Endonuclease III homolog yes no 0.146 0.584 0.292 7e-06
P39788219 Probable endonuclease III yes no 0.144 0.625 0.263 9e-05
Q4UK93213 Endonuclease III OS=Ricke yes no 0.148 0.661 0.244 0.0002
Q58829220 Putative endonuclease MJ1 yes no 0.167 0.722 0.264 0.0004
Q92GH4210 Endonuclease III OS=Ricke yes no 0.101 0.457 0.263 0.0005
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2 Back     alignment and function desciption
 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/961 (56%), Positives = 656/961 (68%), Gaps = 48/961 (4%)

Query: 1    MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
            MSLAARFP K S+ R    +  +++VE+PE CI   NE   W E ++HP   + S     
Sbjct: 1047 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 1106

Query: 59   PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
              E  R    SG+ + +  E     LEEE++SSQDS    I QS G + SCS S S+AE 
Sbjct: 1107 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 1166

Query: 119  SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
                C  K  +G++   Q G+  L  +     N+     EG    ++ E     Q++  L
Sbjct: 1167 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 1226

Query: 177  ESIDNLGSSLTFTQLLNFNSPQNQVGF----SSDYEPHMTSYSELLEAEGSEIYN-GECS 231
            E   N   S+ F Q      P+N   +    SS YE   T    +L+ E   +   G   
Sbjct: 1227 EKTMNWKDSVCFGQ------PRNDTNWQTTPSSSYEQCATRQPHVLDIEDFGMQGEGLGY 1280

Query: 232  SWPSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKM----LSASPYV 281
            SW SIS    + KN++  R         P E  G+ +      STP ++    LS S   
Sbjct: 1281 SWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIP-----STPHELPGMGLSGSSSA 1335

Query: 282  LLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPS 341
            + +     Q N           Q   +   H ++TF  + ++ +E+      + +QN+  
Sbjct: 1336 VQEHQDDTQHN----------QQDEMNKASHLQKTF-LDLLNSSEECLTRQSSTKQNITD 1384

Query: 342  GSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGE 401
            G +  ++T     D    N    N L+E NS  +  +A + Y ETN  I +  K      
Sbjct: 1385 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVE-YKETNATILREMKGTLADG 1443

Query: 402  KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
            KK    W+SLRK+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R
Sbjct: 1444 KKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVR 1503

Query: 462  MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
            +KDFL R+V++HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDT
Sbjct: 1504 IKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDT 1563

Query: 522  NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
            NVGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQLIT
Sbjct: 1564 NVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLIT 1623

Query: 582  FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
            FGKVFCTKS+PNCNACPMRGECRHFASA+ASARLALP PEE+S+ S+T+P   E  P V 
Sbjct: 1624 FGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVA 1683

Query: 642  INPMPLPSPEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDE 697
            I  + LP P + SLA      RE   CEPIIEEPA+P QECTEITESDIEDA+Y EDPDE
Sbjct: 1684 IPMIELPLPLEKSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDE 1741

Query: 698  IPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQ 757
            IPTIKLNIE+F + L+ +M+  MELQE DMSKALVAL+P   SIP PKLKN+SRLRTEHQ
Sbjct: 1742 IPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQ 1801

Query: 758  VYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTC 817
            VYELPDSH LL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C  K SGK+C ++TC
Sbjct: 1802 VYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETC 1861

Query: 818  FSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWL 877
              CNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+
Sbjct: 1862 SECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWI 1921

Query: 878  WNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQKSRAPRPLMARLHFPASK 937
            W+LPRR VYFGTSV+SIF+GLSTE IQFCFWKGFVCVRGF+QK+RAPRPLMARLHFPASK
Sbjct: 1922 WDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASK 1981

Query: 938  L 938
            L
Sbjct: 1982 L 1982
Transcriptional activator involved in gene imprinting. Catalyzes the release of 5-methylcytosine (5-meC) from DNA by a glycosylase/lyase mechanism. Allows the expression of the maternal copy of the imprinted MEA gene before fertilization, possibly by antagonizing or suppressing DNA methylation on target promoter. Probably acts by nicking the MEA promoter. Required for stable reproducible patterns of floral and vegetative development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2 Back     alignment and function description
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2 Back     alignment and function description
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 Back     alignment and function description
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1) GN=NTH1 PE=1 SV=1 Back     alignment and function description
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth PE=3 SV=1 Back     alignment and function description
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=nth PE=3 SV=1 Back     alignment and function description
>sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1434 PE=3 SV=1 Back     alignment and function description
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=nth PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query947
225449724 2198 PREDICTED: transcriptional activator DEM 0.986 0.424 0.626 0.0
330370551 2055 DNA N-glycosylase/DNA-(apurinic or apyri 0.947 0.436 0.598 0.0
255580114 1876 conserved hypothetical protein [Ricinus 0.931 0.470 0.617 0.0
449512809 1736 PREDICTED: transcriptional activator DEM 0.965 0.526 0.586 0.0
449465553 1679 PREDICTED: transcriptional activator DEM 0.965 0.544 0.586 0.0
297806437 1997 hypothetical protein ARALYDRAFT_487239 [ 0.973 0.461 0.569 0.0
296090400 1621 unnamed protein product [Vitis vinifera] 0.575 0.336 0.845 0.0
30680560 1729 transcriptional activator DEMETER [Arabi 0.964 0.528 0.566 0.0
21743571 1729 DEMETER protein [Arabidopsis thaliana] 0.964 0.528 0.566 0.0
145334291 1987 transcriptional activator DEMETER [Arabi 0.964 0.459 0.566 0.0
>gi|225449724|ref|XP_002267310.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1157 bits (2992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/967 (62%), Positives = 716/967 (74%), Gaps = 33/967 (3%)

Query: 1    MSLAARFPL--KSNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGS-SQSSITP 56
            MSL +RFPL  +SNK + + + + ILVEEPEVCI   +++I+WHE + H    +Q+ +  
Sbjct: 1242 MSLVSRFPLHPESNKTSYSNEAS-ILVEEPEVCIMNPDDTIKWHEKVSHQQVYNQAFVAY 1300

Query: 57   HEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEA 116
             E +EH+R    SG  +TSL        EEE++SSQDS++S+++Q+   +RSCSGSNSEA
Sbjct: 1301 SESSEHRRDSPDSGTSETSLVGAPNQRAEEEVMSSQDSVNSSVVQTTV-LRSCSGSNSEA 1359

Query: 117  EDSPPGCKLD----NGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQ 172
            ED   G K +    + S N   +    + Q+     N SS F E   R+++        Q
Sbjct: 1360 EDPTTGHKTNKVQASASTNILYMEKTFMSQECQYHANKSSNFDENTMRYRK--------Q 1411

Query: 173  ESGLESIDNLGSSLTFTQLLNFNSPQNQVGF--SSDYEPHMTSYSELLEAEGSEIYNGE- 229
               L+ ++N   S + T L+N  +   Q     SS+Y  HMT  S +LE E  ++   E 
Sbjct: 1412 NPRLDRVENHTESSSLTYLINSGNSNKQAPAVPSSNYRLHMTPDSGILEVECLQVLGEES 1471

Query: 230  CSSWPSISSESSKAKNESYAR--AQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPT 287
             SSWPS +S  +  K+ ++     QQ  E I +T  QQNGL   ++    +P  LL+   
Sbjct: 1472 ISSWPSAASGIANPKDVNWTSKGTQQMTESIRKTTAQQNGLMNLQEATVGNPNALLRNYP 1531

Query: 288  MQQPNASQTRSPPKYDQSCCDIYQHER-RTFQCES------ISIAEQMHHTDLAKEQNVP 340
            MQQ ++ Q     + D+  C  +  ER +TFQ +S      +  AE +          +P
Sbjct: 1532 MQQ-SSMQPGCTTENDKQSCKNHDLERTKTFQMQSMPSREPLKPAEALDTRRDTTMHQIP 1590

Query: 341  SGSMLAEKTRNLGDDISVANK--LSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKA 398
            +   L E+  N+ +  S  +K    +N+++EP S EQV S++K    T  NI K KK K 
Sbjct: 1591 NVPELTEEASNVRERDSAVDKQICLENEVLEPLSREQVHSSNKESGGTTTNILKPKKEKV 1650

Query: 399  DGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNML 458
            +G KK A DW+SLRK+VQ N  K+ERS+D MDSLDYEA+RCA+V  ISEAIKERGMNNML
Sbjct: 1651 EGTKKKAFDWDSLRKQVQANGRKRERSKDTMDSLDYEAIRCAHVNVISEAIKERGMNNML 1710

Query: 459  AERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFP 518
            AER+KDFLNRLVREHGSIDLEWLRD PPDKAKDYLLSIRGLGLKSVECVRLLTLH LAFP
Sbjct: 1711 AERIKDFLNRLVREHGSIDLEWLRDSPPDKAKDYLLSIRGLGLKSVECVRLLTLHQLAFP 1770

Query: 519  VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 578
            VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTLYELHYQ
Sbjct: 1771 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPMLESIQKYLWPRLCKLDQRTLYELHYQ 1830

Query: 579  LITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNP 638
            LITFGKVFCTK KPNCNACPMRGECRHFASAFASARLALP PEEKSIVSST P++A+RNP
Sbjct: 1831 LITFGKVFCTKHKPNCNACPMRGECRHFASAFASARLALPAPEEKSIVSSTAPSVADRNP 1890

Query: 639  SVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEI 698
            +  INP+PLPS E + L +  ++  KCEPIIE PATPE +C E  ESDIEDAFYEDPDEI
Sbjct: 1891 TAFINPIPLPSLESNLLGKEEQDTSKCEPIIEVPATPEPQCIETLESDIEDAFYEDPDEI 1950

Query: 699  PTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQV 758
            PTIKLN EEFT+NLQ+YMQE MELQE DMSKALVAL+P A SIP PKLKNVSRLRTEHQV
Sbjct: 1951 PTIKLNFEEFTLNLQNYMQENMELQEGDMSKALVALDPKATSIPTPKLKNVSRLRTEHQV 2010

Query: 759  YELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCF 818
            YELPDSHPLL+GMD REPDDPSPYLLAIWTPGETANS Q PE RC S+E GKLC+EKTCF
Sbjct: 2011 YELPDSHPLLKGMDIREPDDPSPYLLAIWTPGETANSSQPPERRCESQEPGKLCNEKTCF 2070

Query: 819  SCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLW 878
            SCNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS+NPIDVPR W+W
Sbjct: 2071 SCNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSINPIDVPRAWIW 2130

Query: 879  NLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQKSRAPRPLMARLHFPASKL 938
            NLPRR VYFGTSV+SIF+GL TEGIQ+CFW+GFVCVRGFDQKSRAPRPLMARLH  A+KL
Sbjct: 2131 NLPRRTVYFGTSVTSIFRGLPTEGIQYCFWRGFVCVRGFDQKSRAPRPLMARLHLSANKL 2190

Query: 939  VKARNKN 945
             K +N+N
Sbjct: 2191 SKTKNEN 2197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|330370551|gb|AEC12445.1| DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255580114|ref|XP_002530889.1| conserved hypothetical protein [Ricinus communis] gi|223529542|gb|EEF31495.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449512809|ref|XP_004164145.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449465553|ref|XP_004150492.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297806437|ref|XP_002871102.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp. lyrata] gi|297316939|gb|EFH47361.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|296090400|emb|CBI40219.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30680560|ref|NP_196076.2| transcriptional activator DEMETER [Arabidopsis thaliana] gi|332003377|gb|AED90760.1| transcriptional activator DEMETER [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21743571|gb|AAM77215.1| DEMETER protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145334291|ref|NP_001078527.1| transcriptional activator DEMETER [Arabidopsis thaliana] gi|108935833|sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gi|84782664|gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gi|332003378|gb|AED90761.1| transcriptional activator DEMETER [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query947
TAIR|locus:21844321987 DME "DEMETER" [Arabidopsis tha 0.975 0.465 0.532 1.2e-245
TAIR|locus:20449231393 DML1 "demeter-like 1" [Arabido 0.576 0.391 0.637 2.7e-197
TAIR|locus:21001381332 DML2 "demeter-like 2" [Arabido 0.564 0.401 0.570 1.5e-162
TAIR|locus:21243011044 DML3 "demeter-like protein 3" 0.572 0.519 0.457 1e-124
TAIR|locus:451510334278 AT4G04957 "AT4G04957" [Arabido 0.048 0.589 0.673 3e-11
TAIR|locus:2100382293 AT3G47830 [Arabidopsis thalian 0.099 0.320 0.425 4e-10
TIGR_CMR|CHY_1121210 CHY_1121 "endonuclease III" [C 0.083 0.376 0.322 2.2e-05
TAIR|locus:2184432 DME "DEMETER" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2352 (833.0 bits), Expect = 1.2e-245, Sum P(2) = 1.2e-245
 Identities = 506/950 (53%), Positives = 625/950 (65%)

Query:     1 MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
             MSLAARFP K S+ R    +  +++VE+PE CI   NE   W E ++HP   + S     
Sbjct:  1047 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 1106

Query:    59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
               E  R    SG+ + +  E     LEEE++SSQDS    I QS G + SCS S S+AE 
Sbjct:  1107 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 1166

Query:   119 SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
                 C  K  +G++   Q G+  L  +     N+     EG    ++ E     Q++  L
Sbjct:  1167 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 1226

Query:   177 ESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYN-GECXXXXX 235
             E   N   S+ F Q  N  + Q     SS YE   T    +L+ E   +   G       
Sbjct:  1227 EKTMNWKDSVCFGQPRNDTNWQTTP--SSSYEQCATRQPHVLDIEDFGMQGEGLGYSWMS 1284

Query:   236 XXXXXXKAKNESYARAQ-QPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNAS 294
                   + KN++  R   +    +      Q   STP ++       L    +  Q +  
Sbjct:  1285 ISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHELPGMG---LSGSSSAVQEHQD 1341

Query:   295 QTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKT-RNLG 353
              T+   + + +      H ++TF  + ++ +E+      + +QN+  G +  ++T  ++ 
Sbjct:  1342 DTQHNQQDEMNKAS---HLQKTF-LDLLNSSEECLTRQSSTKQNITDGCLPRDRTAEDVV 1397

Query:   354 DDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRK-ADGEKKNAIDWESLR 412
             D +S  + L  N L+E NS  +  +A + Y ETN  I +  K   ADG+K  +  W+SLR
Sbjct:  1398 DPLSNNSSLQ-NILVESNSSNKEQTAVE-YKETNATILREMKGTLADGKKPTS-QWDSLR 1454

Query:   413 KEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE 472
             K+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R+KDFL R+V++
Sbjct:  1455 KDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKD 1514

Query:   473 HGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGW 532
             HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDTNVGRIAVR+GW
Sbjct:  1515 HGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGW 1574

Query:   533 VXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKP 592
             V                  VLESIQK+LWPRLCKLDQRTLYELHYQLITFGKVFCTKS+P
Sbjct:  1575 VPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRP 1634

Query:   593 NCNACPMRGECXXXXXXXXXXXXXXPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEK 652
             NCNACPMRGEC              P PEE+S+ S+T+P   E  P V I  + LP P +
Sbjct:  1635 NCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLE 1694

Query:   653 SSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDEIPTIKLNIEEF 708
              SLA      RE   CEPIIEEPA+P QECTEITESDIEDA+Y EDPDEIPTIKLNIE+F
Sbjct:  1695 KSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIEQF 1752

Query:   709 TVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLL 768
              + L+ +M+  MELQE DMSKALVAL+P   SIP PKLKN+SRLRTEHQVYELPDSH LL
Sbjct:  1753 GMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLL 1812

Query:   769 EGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNS 828
             +GMD+REPDDPSPYLLAIWTPGETANS Q PE +C  K SGK+C ++TC  CNS+RE NS
Sbjct:  1813 DGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANS 1872

Query:   829 QTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFG 888
             QTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+W+LPRR VYFG
Sbjct:  1873 QTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFG 1932

Query:   889 TSVSSIFKGLSTEGIQFCFWKGFVCVRGFDQKSRAPRPLMARLHFPASKL 938
             TSV+SIF+GLSTE IQFCFWKGFVCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct:  1933 TSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1982
GO:0003824 "catalytic activity" evidence=IEA
GO:0004519 "endonuclease activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0006281 "DNA repair" evidence=IEA
GO:0006284 "base-excision repair" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0019104 "DNA N-glycosylase activity" evidence=ISS;IDA
GO:0043078 "polar nucleus" evidence=IDA
GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP
GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IDA
GO:0006306 "DNA methylation" evidence=RCA;IDA
TAIR|locus:2044923 DML1 "demeter-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100138 DML2 "demeter-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124301 DML3 "demeter-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103342 AT4G04957 "AT4G04957" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100382 AT3G47830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1121 CHY_1121 "endonuclease III" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query947
pfam00730144 pfam00730, HhH-GPD, HhH-GPD superfamily base excis 4e-20
COG0177211 COG0177, Nth, Predicted EndoIII-related endonuclea 1e-19
smart00478149 smart00478, ENDO3c, endonuclease III 1e-17
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 2e-15
COG2231215 COG2231, COG2231, Uncharacterized protein related 1e-11
TIGR01083191 TIGR01083, nth, endonuclease III 2e-09
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 4e-05
TIGR00588310 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) 0.002
PRK10702211 PRK10702, PRK10702, endonuclease III; Provisional 0.002
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein Back     alignment and domain information 
 Score = 87.4 bits (217), Expect = 4e-20
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 15/144 (10%)

Query: 416 QRNSGKQ-----ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV 470
           Q+ S K      +R  +R      E L  A+ +E+ E IK  G     A+ +K+    LV
Sbjct: 7   QQTSDKAANKITKRLFERYGFPTPEDLAEADEEELRELIKGLGFYRRKAKYIKELARILV 66

Query: 471 REHGSIDLEWLRDVPPDKAKDY-LLSIRGLGLKSVECVRLLTLHH--LAFPVDTNVGRIA 527
             +          VP D  +   LL++ G+G  + E V L  L    +   VDT+V R+A
Sbjct: 67  EGYLG-------LVPLDLEELEALLALPGVGRWTAEAVLLFALGRPDVFPAVDTHVRRVA 119

Query: 528 VRLGWVPLQPLPESLQLHLLELYP 551
            RLG +  +P  + ++  L EL+P
Sbjct: 120 KRLGLIDTKPPKKEVERELEELWP 143

This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family. Length = 144
>gnl|CDD|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III Back     alignment and domain information
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>gnl|CDD|225140 COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130155 TIGR01083, nth, endonuclease III Back     alignment and domain information
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>gnl|CDD|182661 PRK10702, PRK10702, endonuclease III; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 947
PF15628103 RRM_DME: RRM in Demeter 100.0
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 100.0
PRK10702211 endonuclease III; Provisional 100.0
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 100.0
TIGR01083191 nth endonuclease III. This equivalog model identif 100.0
PRK10880350 adenine DNA glycosylase; Provisional 100.0
KOG1921286 consensus Endonuclease III [Replication, recombina 100.0
PRK13910289 DNA glycosylase MutY; Provisional 100.0
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.98
COG2231215 Uncharacterized protein related to Endonuclease II 99.97
COG1194342 MutY A/G-specific DNA glycosylase [DNA replication 99.96
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.92
cd00056158 ENDO3c endonuclease III; includes endonuclease III 99.92
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.9
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 99.83
KOG2457555 consensus A/G-specific adenine DNA glycosylase [Re 99.82
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.8
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 99.77
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 99.69
KOG2875323 consensus 8-oxoguanine DNA glycosylase [Replicatio 99.62
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.5
KOG1918254 consensus 3-methyladenine DNA glycosidase [Replica 99.49
PF1562932 Perm-CXXC: Permuted single zf-CXXC unit 99.1
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 98.43
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 97.64
PF1057617 EndIII_4Fe-2S: Iron-sulfur binding domain of endon 96.84
PF09674232 DUF2400: Protein of unknown function (DUF2400); In 96.58
TIGR02757229 conserved hypothetical protein TIGR02757. Members 96.02
smart0052526 FES FES domain. iron-sulpphur binding domain in DN 95.96
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 91.11
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 90.59
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 88.01
PF1471668 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU 86.8
TIGR0042669 competence protein ComEA helix-hairpin-helix repea 84.7
PF09171246 DUF1886: Domain of unknown function (DUF1886); Int 84.65
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 83.59
PRK02515132 psbU photosystem II complex extrinsic protein prec 83.11
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 81.36
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 80.77
PRK00076196 recR recombination protein RecR; Reviewed 80.06
>PF15628 RRM_DME: RRM in Demeter Back     alignment and domain information 
Probab=100.00  E-value=4.9e-70  Score=496.81  Aligned_cols=103  Identities=87%  Similarity=1.516  Sum_probs=102.1

Q ss_pred             eeEeeeccccccCCccCCCccceeceeeeccCCCCCCcccchhhhccCCceEEEeccChhhhcccCCHHHHHHhhhccce
Q 002245          833 GTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGFV  912 (947)
Q Consensus       833 gTiLiPCRtAmrg~FPLnGTYFQvNEVFaDh~Ss~~Pi~vpr~~iw~L~rr~vyfGtsv~sI~kg~s~~~iq~cf~~g~v  912 (947)
                      |||||||||||||+|||||||||||||||||+||+|||+|||+|||+|+||+|||||||+|||||||++|||+|||+|||
T Consensus         1 gtiLiPCrtAmrg~FPLnGTYFQ~nEVFaD~~Ss~~Pi~vpr~~iw~L~rr~vYfGtsv~SIfrGls~~eIq~cF~~G~V   80 (103)
T PF15628_consen    1 GTILIPCRTAMRGSFPLNGTYFQVNEVFADHESSRNPIDVPRELIWNLPRRIVYFGTSVSSIFRGLSREEIQQCFWKGFV   80 (103)
T ss_pred             CceEeeehhhhCCccccCceEEEEEEEEeccccccCCeeccHHHhhcCCceEEEecCcHHHHhcccCHHHHHHHHhcCcE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecccccccCCccccccccccc
Q 002245          913 CVRGFDQKSRAPRPLMARLHFPA  935 (947)
Q Consensus       913 CvR~fdr~tr~P~pl~~~lh~~~  935 (947)
                      |||||||+||+||||++|||+++
T Consensus        81 CVR~FDr~Tr~PrpL~~rLH~~~  103 (103)
T PF15628_consen   81 CVRGFDRKTRAPRPLCARLHFPA  103 (103)
T ss_pred             EEeecccccCCCcchhhhccCCC
Confidence            99999999999999999999985

>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>KOG1921 consensus Endonuclease III [Replication, recombination and repair] Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] Back     alignment and domain information
>PF15629 Perm-CXXC: Permuted single zf-CXXC unit Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4 Back     alignment and domain information
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides Back     alignment and domain information
>TIGR02757 conserved hypothetical protein TIGR02757 Back     alignment and domain information
>smart00525 FES FES domain Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A Back     alignment and domain information
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region Back     alignment and domain information
>PF09171 DUF1886: Domain of unknown function (DUF1886); InterPro: IPR015254 This entry represents a set of known and suspected archaeal N-glycosylase/DNA lyases Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK00076 recR recombination protein RecR; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query947
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 4e-24
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 3e-14
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 2e-12
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 7e-12
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 2e-10
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 3e-07
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 3e-06
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 6e-04
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Length = 218 Back     alignment and structure
 Score =  100 bits (251), Expect = 4e-24
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 10/170 (5%)

Query: 421 KQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEW 480
           K     +  D ++ + +      +++E ++  G  N  A+R+ D    ++++  S     
Sbjct: 56  KNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQS----- 110

Query: 481 LRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 540
             +   +  +++LL  +G+G +S + +           VD        +LG        +
Sbjct: 111 FENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEI--EDYD 168

Query: 541 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVFCTK 589
            LQ    +     E++   L      +    LY   H +++ F K     
Sbjct: 169 ELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVEFSKQKLEL 216
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Length = 226 Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Length = 207 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Length = 211 Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Length = 219 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Length = 233 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query947
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 100.0
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 100.0
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 100.0
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 100.0
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 100.0
3fsp_A369 A/G-specific adenine glycosylase; protein-DNA comp 100.0
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 99.97
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 99.92
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.92
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.92
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 99.91
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 99.91
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.9
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 99.88
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 99.88
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 99.88
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.87
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 99.85
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 99.84
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 84.15
4glx_A586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 83.38
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 82.04
3vdp_A212 Recombination protein RECR; zinc finger, DNA repai 82.02
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 81.84
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 81.59
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-41  Score=351.96  Aligned_cols=209  Identities=20%  Similarity=0.327  Sum_probs=186.9

Q ss_pred             cHHHHHHHHHhhhhhcCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCcccc
Q 002245          345 LAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQER  424 (947)
Q Consensus       345 ~~~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er  424 (947)
                      .+++..+|+++|.+.||.+...+.+          .++|+.||++||++|++++.+++    .|.+|+..          
T Consensus         6 ~~~~~~~i~~~L~~~y~~~~~~l~~----------~~pfe~Lv~~IlsQqts~~~v~~----~~~~l~~~----------   61 (226)
T 1orn_A            6 TKQQIRYCLDEMAKMFPDAHCELVH----------RNPFELLIAVVLSAQCTDALVNK----VTKRLFEK----------   61 (226)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCCCSCC----------SSHHHHHHHHHHHTTSCHHHHHH----HHHHHHHH----------
T ss_pred             hHHHHHHHHHHHHHHcCccCCCCCC----------CCHHHHHHHHHHhCCCcHHHHHH----HHHHHHHH----------
Confidence            3477889999999999987655544          36899999999999999988874    35666533          


Q ss_pred             ccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHH
Q 002245          425 SRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV  504 (947)
Q Consensus       425 ~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTA  504 (947)
                            +|||++|+++++++|+++|+++|||++||++|+++|+.++++|+|       ++|..  +++|++|||||+|||
T Consensus        62 ------fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~TA  126 (226)
T 1orn_A           62 ------YRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG-------EVPRD--RDELMKLPGVGRKTA  126 (226)
T ss_dssp             ------CCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT-------SCCSC--HHHHTTSTTCCHHHH
T ss_pred             ------CCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC-------CcHHH--HHHHHHCCCccHHHH
Confidence                  899999999999999999999999999999999999999999988       67765  999999999999999


Q ss_pred             HHHHHHhcCCceeecchHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHHhH
Q 002245          505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK  584 (947)
Q Consensus       505 d~ILlfafgrpafPVDTHV~RVl~RLGlv~~k~tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~fGR  584 (947)
                      ++||+|+||+|+||||+||.|++.|+|+++...+++++++.+++++|.                 ..+.++|++||+|||
T Consensus       127 ~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p~-----------------~~~~~~~~~lv~~G~  189 (226)
T 1orn_A          127 NVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPK-----------------EEWSITHHRMIFFGR  189 (226)
T ss_dssp             HHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCG-----------------GGHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCceeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCh-----------------hhHHHHHHHHHHHHH
Confidence            999999999999999999999999999987557899999999998883                 346799999999999


Q ss_pred             hhcccCCCCCCCCCChhhchhhhhh
Q 002245          585 VFCTKSKPNCNACPMRGECRHFASA  609 (947)
Q Consensus       585 ~ICtarkPkC~~CPLrdlC~yy~k~  609 (947)
                      .+|++++|+|+.|||++.|+++.+.
T Consensus       190 ~~C~~~~P~C~~Cpl~~~C~~~~~~  214 (226)
T 1orn_A          190 YHCKAQSPQCPSCPLLHLCREGKKR  214 (226)
T ss_dssp             HTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred             HHcCCCCCCCCCCCChhhhhhHhhc
Confidence            9999999999999999999998764
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 947
d1pu6a_217 a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III 3e-21
d1orna_214 a.96.1.1 (A:) Endonuclease III {Escherichia coli [ 3e-09
d2abka_211 a.96.1.1 (A:) Endonuclease III {Escherichia coli [ 9e-09
d1kg2a_224 a.96.1.2 (A:) Catalytic domain of MutY {Escherichi 2e-08
d2noha1190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 5e-08
d1rrqa1221 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacil 5e-07
d1keaa_217 a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Me 1e-06
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Length = 217 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase III (MagIII)
domain: 3-Methyladenine DNA glycosylase III (MagIII)
species: Helicobacter pylori [TaxId: 210]

 Score = 91.0 bits (225), Expect = 3e-21
 Identities = 28/183 (15%), Positives = 69/183 (37%), Gaps = 12/183 (6%)

Query: 408 WESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
           +E++ K ++    K     +  D ++ + +      +++E ++  G  N  A+R+ D   
Sbjct: 44  FEAVLKSLEN--LKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSG 101

Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
            ++++      +   +   +  +++LL  +G+G +S + +           VD       
Sbjct: 102 NILKDF-----QSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFL 156

Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVF 586
            +LG        + LQ    +     E++   L      +    LY   H +++ F K  
Sbjct: 157 KKLGIEI--EDYDELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVEFSKQK 212

Query: 587 CTK 589
              
Sbjct: 213 LEL 215
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Length = 224 Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Length = 221 Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Length = 217 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query947
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 100.0
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 100.0
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 100.0
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 100.0
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 100.0
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 99.85
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.82
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 99.8
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 90.95
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 89.93
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 88.4
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 87.83
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 87.24
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 87.15
d2fmpa182 DNA polymerase beta, N-terminal (8 kD)-domain {Hum 86.56
d2bcqa176 DNA polymerase lambda {Human (Homo sapiens) [TaxId 85.06
d1dgsa1181 NAD+-dependent DNA ligase, domain 3 {Thermus filif 84.78
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 82.76
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 82.5
d1vdda_199 Recombination protein RecR {Deinococcus radioduran 82.33
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 82.24
d2edua191 KIF22, C-terminal domain {Human (Homo sapiens) [Ta 80.88
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-46  Score=382.40  Aligned_cols=208  Identities=21%  Similarity=0.270  Sum_probs=190.0

Q ss_pred             CcHHHHHHHHHhhhhhcCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCccc
Q 002245          344 MLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE  423 (947)
Q Consensus       344 ~~~~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~e  423 (947)
                      |+++++.+|+.||.+.||.|..++.+          .++|+.||+.|||+|+++..++++    |++|++          
T Consensus         1 M~~~~~~~i~~~l~~~~~~~~~~l~~----------~~p~~vli~~iLsqqT~~~~v~~~----~~~l~~----------   56 (211)
T d2abka_           1 MNKAKRLEILTRLRENNPHPTTELNF----------SSPFELLIAVLLSAQATDVSVNKA----TAKLYP----------   56 (211)
T ss_dssp             CCHHHHHHHHHHHHHHCSSCCCSSCC----------SSHHHHHHHHHHTTTSCHHHHHHH----HHHHTT----------
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCC----------CCHHHHHHHHHHhccchHHHHHHH----HHHHHH----------
Confidence            89999999999999999999988766          378999999999999999888753    344431          


Q ss_pred             cccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhH
Q 002245          424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS  503 (947)
Q Consensus       424 r~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KT  503 (947)
                            .++||++|++++.++|+++|+++|||++||++|+++|+.|+++|||       .+|.+  +++|++|||||+||
T Consensus        57 ------~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~LpGVG~~T  121 (211)
T d2abka_          57 ------VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPED--RAALEALPGVGRKT  121 (211)
T ss_dssp             ------TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT-------SCCSC--HHHHHHSTTCCHHH
T ss_pred             ------hccChHHHHhhhHhHhHHHHHHhhhhhhHHHHHHHHHHHHHHHhcC-------chhHH--HHHHHHHHhhchHH
Confidence                  2789999999999999999999999999999999999999999999       78988  99999999999999


Q ss_pred             HHHHHHHhcCCceeecchHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHHh
Q 002245          504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG  583 (947)
Q Consensus       504 Ad~ILlfafgrpafPVDTHV~RVl~RLGlv~~k~tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~fG  583 (947)
                      |++||+|+||+|+|+||+||+||+.|+|+++. .++.+++..+.+++|.      ..           ++++|++||+||
T Consensus       122 A~~Il~~a~~~p~~~vD~nv~Rv~~R~g~~~~-~~~~~~~~~~~~~~p~------~~-----------~~~~~~~l~~~G  183 (211)
T d2abka_         122 ANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPG-KNVEQVEEKLLKVVPA------EF-----------KVDCHHWLILHG  183 (211)
T ss_dssp             HHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCC-SSHHHHHHHHHHHSCG------GG-----------TTTHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHhccCcc-chhhHHHHHHhhcCcc------cc-----------HHHHHHHHHHHh
Confidence            99999999999999999999999999999985 6888999988888883      33           357999999999


Q ss_pred             HhhcccCCCCCCCCCChhhchhhhh
Q 002245          584 KVFCTKSKPNCNACPMRGECRHFAS  608 (947)
Q Consensus       584 R~ICtarkPkC~~CPLrdlC~yy~k  608 (947)
                      +.+|++++|+|+.|||++.|+||.+
T Consensus       184 ~~vC~~~~P~C~~Cpl~~~C~~~~k  208 (211)
T d2abka_         184 RYTCIARKPRCGSCIIEDLCEYKEK  208 (211)
T ss_dssp             HHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred             hhhccCCCCCCCCCCCcccCCCcCc
Confidence            9999999999999999999999876
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure