Citrus Sinensis ID: 002248
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 947 | ||||||
| 225470173 | 1003 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.933 | 0.516 | 0.0 | |
| 255539459 | 920 | ATP binding protein, putative [Ricinus c | 0.931 | 0.958 | 0.530 | 0.0 | |
| 302143890 | 930 | unnamed protein product [Vitis vinifera] | 0.916 | 0.933 | 0.486 | 0.0 | |
| 359474019 | 1071 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.884 | 0.458 | 0.0 | |
| 449461249 | 1025 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.903 | 0.467 | 0.0 | |
| 15242952 | 853 | Myosin heavy chain-related protein [Arab | 0.869 | 0.964 | 0.468 | 0.0 | |
| 356574487 | 880 | PREDICTED: uncharacterized protein LOC10 | 0.899 | 0.968 | 0.458 | 0.0 | |
| 356534143 | 880 | PREDICTED: uncharacterized protein LOC10 | 0.899 | 0.968 | 0.455 | 0.0 | |
| 356528120 | 1054 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.890 | 0.414 | 0.0 | |
| 449457662 | 1076 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.869 | 0.414 | 0.0 |
| >gi|225470173|ref|XP_002268024.1| PREDICTED: uncharacterized protein LOC100248827 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1014 (51%), Positives = 685/1014 (67%), Gaps = 78/1014 (7%)
Query: 1 MFKS--WRNDKNKIKAVFKLQFQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQNGT 58
MFKS WR++K KIKAVFKLQFQ QVP+ + + +MISL+P+DVGKPT +LEK V+ GT
Sbjct: 1 MFKSARWRSEKIKIKAVFKLQFQATQVPESRGNLLMISLIPEDVGKPTVRLEKAAVREGT 60
Query: 59 CLWENPIYVTVKLIREPKTGYIKEKIYHFIVSTGSSKSGFLGEASIDFADFAAETEPLTL 118
C WENPIY TVKLI+E KTG I EKIY FIVSTGSSK+G LGEASI+FAD+ TEPLT+
Sbjct: 61 CTWENPIYETVKLIKEKKTGIIHEKIYRFIVSTGSSKTGILGEASINFADYEEATEPLTV 120
Query: 119 SLPLKFANSGAVLHVTIEKMDGATDQRYIEENEDKDQQSNCNTQDQNFAEDALESCWDGN 178
SLPL+ NSGA+LH E +D T Q E+K+ + NC + +A + G
Sbjct: 121 SLPLQTLNSGAILH--DEDLDRITSQN----GENKNFRVNCGS----YATLTPTAQDLGL 170
Query: 179 SDQNNQEDPASLQSPLRQNSVPQQGTVDAIKTHNHAHRRSNTDWSVGSISDGSLAESTNS 238
+ +P SL SPLRQ+S PQ+GT+ A + H RSNTD+SVGS SDGS+ +STNS
Sbjct: 171 KNATTHRNPNSLLSPLRQSSRPQEGTIAATTRKDRMHWRSNTDFSVGSASDGSMIDSTNS 230
Query: 239 PDDNLG------SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQII 292
+DN SD + EKLK+E ++RQ ELSELEL SLRKQ+AKE KR QD TR+ +
Sbjct: 231 AEDNFPGGFKEDSDSTTEKLKSENFNLLRQAELSELELQSLRKQIAKECKRGQDLTRKNV 290
Query: 293 SLSSERDALTIECEQLRK-QNSIDIAEIERRLQSE-EHLKFLQEEIREELNYEKEVSAHL 350
L ERDAL ECEQL+ + I+ E+ RL E E + L EE+R+EL+YEK+++ +L
Sbjct: 291 GLKEERDALKEECEQLKSMKKCINDEELSDRLTFEREASRVLLEEMRKELDYEKDLNRNL 350
Query: 351 RLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLE--------ESKLVR------ 396
RLQL+KTQDSN+ELI+AV+DL EMLE +N EI L +E E+K+ +
Sbjct: 351 RLQLQKTQDSNSELIIAVRDLEEMLEPRNKEIFQLFGDIENREKSDDVEAKISKLKMNKN 410
Query: 397 EDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQE 456
EDQ ALE L +E+ KEV +L++K+ D EI+ +K E+LE+++ QL D +VL+QE
Sbjct: 411 EDQEALEELVEEQIDAKEVGVLQKKMTDLHGEIEVHRKDREELEMHMAQLALDNEVLKQE 470
Query: 457 NQCLTSKLEKIQQQESMK-SRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINE 515
Q + S LE+ Q+QE MK E SLATIKELESQ ERLE +IK+Q+++ SES ++NE
Sbjct: 471 KQNI-STLEQYQKQELMKIQNELSASLATIKELESQVERLEKEIKKQAQKLSESSNAVNE 529
Query: 516 LECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQD 575
L+ QVK L++EL+KQAQ FEDD++A+T AK EQEQRAIRAEE LRKTRW N +AERLQ+
Sbjct: 530 LQMQVKSLEKELEKQAQGFEDDLEAMTRAKIEQEQRAIRAEETLRKTRWNNAQSAERLQE 589
Query: 576 EFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQ 635
EFRR+SV+M SKFDENEK+AMKA+TEAN+ R+QK LEEMLQKAN+E+ LIKDQ VKLQ
Sbjct: 590 EFRRISVEMTSKFDENEKVAMKAVTEANDLRVQKRILEEMLQKANEEIGLIKDQYDVKLQ 649
Query: 636 ELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQY 695
ELS++++ K KQI+KM L+LD QL K E +KHEA EI MLR EIE++ E+
Sbjct: 650 ELSNEVDLKTKQIEKMTLDLDKKPKQLEYAEKQEGEKHEASFAEIQMLRAEIERITSEKK 709
Query: 696 NLSEHG----KRRDD-NKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELIS 750
LSE K RD+ + K + GET+ LI++ N E+ +LE+KFAS +EA K E+L +
Sbjct: 710 TLSEQVEEKEKFRDEMEQMKTAIGETERLIKRQNEEKAELERKFASVMKEAEKVQEDLHT 769
Query: 751 MRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEE 810
M +K +NE LIG+LQ+E++NLK Q ++L+N L +E LEK+NL +QVFQLK +L+KK+E
Sbjct: 770 MTCMKDDNETLIGSLQSELDNLKPQYSELKNLLFQEVLEKENLMQQVFQLKGDLEKKEEV 829
Query: 811 INRT--------GKGLKKYGGPVSDAQMTSMKERLRKGQKKLNKAELETSDNRIAVDEY- 861
+ T G+ G + M + R +++ K E + ++
Sbjct: 830 VAVTENTGKDNNGQATLSDGTQATATTMEQLNHRTTICEEQFQKEAREAGNVTALASQHE 889
Query: 862 --------------RHMI--------------RKGETCSEKGVTALASHSSDEGNFTEVL 893
+ M+ R ET SEK +T H++DE N TE+L
Sbjct: 890 EGENTGGDLLNPGMKSMVCLSVQNEMGTTSVQRNVETYSEKEMTVSIFHTNDESNLTELL 949
Query: 894 MEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKNGKRN 947
EV+LLKE+NK ME ELKEM+ERYSEISLKFAEVEGERQQLVMTVRNLKNGK++
Sbjct: 950 AEVALLKERNKSMEGELKEMRERYSEISLKFAEVEGERQQLVMTVRNLKNGKKS 1003
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539459|ref|XP_002510794.1| ATP binding protein, putative [Ricinus communis] gi|223549909|gb|EEF51396.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|302143890|emb|CBI22751.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359474019|ref|XP_002269404.2| PREDICTED: uncharacterized protein LOC100261513 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449461249|ref|XP_004148354.1| PREDICTED: uncharacterized protein LOC101208579 [Cucumis sativus] gi|449505214|ref|XP_004162407.1| PREDICTED: uncharacterized LOC101208579 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|15242952|ref|NP_200041.1| Myosin heavy chain-related protein [Arabidopsis thaliana] gi|10177394|dbj|BAB10525.1| hyaluronan mediated motility receptor-like protein [Arabidopsis thaliana] gi|47550677|gb|AAT35237.1| At5g52280 [Arabidopsis thaliana] gi|51970830|dbj|BAD44107.1| hyaluronan mediated motility receptor-like protein [Arabidopsis thaliana] gi|332008812|gb|AED96195.1| Myosin heavy chain-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356574487|ref|XP_003555378.1| PREDICTED: uncharacterized protein LOC100782613 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356534143|ref|XP_003535617.1| PREDICTED: uncharacterized protein LOC100806603 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356528120|ref|XP_003532653.1| PREDICTED: uncharacterized protein LOC100819574 isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449457662|ref|XP_004146567.1| PREDICTED: uncharacterized protein LOC101221081 [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 947 | ||||||
| TAIR|locus:2145141 | 853 | AT5G52280 "AT5G52280" [Arabido | 0.816 | 0.906 | 0.388 | 1.8e-126 | |
| TAIR|locus:2038446 | 1029 | AT1G63300 "AT1G63300" [Arabido | 0.746 | 0.687 | 0.380 | 5.7e-107 | |
| TAIR|locus:2162996 | 983 | AT5G41140 "AT5G41140" [Arabido | 0.595 | 0.573 | 0.349 | 5e-76 | |
| TAIR|locus:2030541 | 1999 | AT1G22060 [Arabidopsis thalian | 0.258 | 0.122 | 0.311 | 1.8e-49 | |
| UNIPROTKB|F1NI68 | 2142 | GOLGA4 "Uncharacterized protei | 0.705 | 0.311 | 0.242 | 2.4e-22 | |
| UNIPROTKB|F1NMQ0 | 2150 | GOLGA4 "Uncharacterized protei | 0.705 | 0.310 | 0.242 | 2.4e-22 | |
| DICTYBASE|DDB_G0290503 | 1492 | DDB_G0290503 [Dictyostelium di | 0.793 | 0.503 | 0.215 | 6.6e-22 | |
| ZFIN|ZDB-GENE-050208-317 | 1422 | tnks1bp1 "tankyrase 1 binding | 0.576 | 0.383 | 0.214 | 6.7e-20 | |
| DICTYBASE|DDB_G0288069 | 1082 | DDB_G0288069 [Dictyostelium di | 0.582 | 0.510 | 0.218 | 1.1e-19 | |
| UNIPROTKB|E1BKZ5 | 3273 | GOLGB1 "Uncharacterized protei | 0.655 | 0.189 | 0.231 | 1.2e-19 |
| TAIR|locus:2145141 AT5G52280 "AT5G52280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
Identities = 320/824 (38%), Positives = 465/824 (56%)
Query: 1 MFKSWRNDKNKIKAVFKLQFQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQNGTCL 60
MFKSWRNDKNKIKAVFKLQFQ QVPKLKK+A+MISLVPDDVGKPTFKLEK V+ G C
Sbjct: 1 MFKSWRNDKNKIKAVFKLQFQATQVPKLKKTALMISLVPDDVGKPTFKLEKSEVKEGICS 60
Query: 61 WENPIYVTVKLIREPKTGYIKEKIYHFIVSTGSSKSGFLGEASIDFADFAAETEPLTLSL 120
WENPIYV+VKLI+EPKTG ++EKIYHF+V+TGSSKSGFLGEASIDFADF E +PLT+SL
Sbjct: 61 WENPIYVSVKLIKEPKTGIVREKIYHFVVATGSSKSGFLGEASIDFADFLTEADPLTVSL 120
Query: 121 PLKFANSGAVLHVTIEKMDGATDQRYIEENED---------KDQQSNCNTQDQNFAEDAL 171
PLKFANSGAVL+VTI K+ GA+D ++IEEN+D K QSN + + N E +L
Sbjct: 121 PLKFANSGAVLNVTIHKIQGASDLKFIEENKDQTLSKEDSFKSLQSNDDLEGYNQDERSL 180
Query: 172 ESCWDGNSDQNNQEDPASLQSPLRQNS--VPQQGTVDAIKTHNHAHRRSNTDWSVGSISD 229
+ N+ D + + +PQ+ +++ + HRRSNTDWS S SD
Sbjct: 181 DVNTAKNAGLGGSFDSIGESGWIDDGNARLPQRH--NSVPATRNGHRRSNTDWSASSTSD 238
Query: 230 GSLAESTNSPDDNLGSD-GSVEKLKNEIAVMMRQVXXXXXXXXXXRKQVAKESKRAQDQT 288
S ES NSP+++ SV + + I + ++ + K+A ++
Sbjct: 239 ESYIESRNSPENSFQRGFSSVTESSDPIERLKMELEALRRQSELSELEKQSLRKQAIKES 298
Query: 289 RQIISLSSERDALTIECEQLRKQ-NSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVS 347
++I LS E L E + ++ + + +E L+ + E+ N +E+
Sbjct: 299 KRIQELSKEVSCLKGERDGAMEECEKLRLQNSRDEADAESRLRCISED---SSNMIEEIR 355
Query: 348 AHLRLQLEKTQDSNAELILA-VKDLNEML----EQKNMEIXXXXXXXXXXXXVREDQLAL 402
L EK SN +L L ++ N L N + + E+ L
Sbjct: 356 DEL--SCEKDLTSNLKLQLQRTQESNSNLILAVRDLNEMLEQKNNEISSLNSLLEEAKKL 413
Query: 403 EALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQEN-QCLT 461
E + + E+D LKQ+I D E+ +KK E+ EI + +LT++ + L++EN + ++
Sbjct: 414 EEHKGMDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEILLDELTQEYESLKEENYKNVS 473
Query: 462 SKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVK 521
SKLE QQ+ S E ++S I EL+SQ E LE K+KQQS EYSE LI++NELE QVK
Sbjct: 474 SKLE--QQECSNAEDEYLDSKDIIDELKSQIEILEGKLKQQSLEYSECLITVNELESQVK 531
Query: 522 ELKRELDKQAQEFEDDIDAVTHAKTXXXXXXXXXXXXLRKTRWKNTVTAERLQDEFRRLS 581
ELK+EL+ QAQ +++DID + KT LRKTRW N +TAERLQ++ +RLS
Sbjct: 532 ELKKELEDQAQAYDEDIDTMMREKTEQEQRAIKAEENLRKTRWNNAITAERLQEKCKRLS 591
Query: 582 VDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQL 641
++M SK E+E L K + EAN R+Q LEEM +K + E++ K+Q ++E + L
Sbjct: 592 LEMESKLSEHENLTKKTLAEANNLRLQNKTLEEMQEKTHTEITQEKEQRK-HVEEKNKAL 650
Query: 642 EQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEK---LRKE----- 693
K + ++ L+L ++L DE + A + E + E R E E+ L KE
Sbjct: 651 SMKVQMLESEVLKL----TKLRDESSAAATETEKIIQEWRKERDEFERKLSLAKEVAKTA 706
Query: 694 QYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMR- 752
Q L+ DD + ++ +T+ ++ + + +L+ F K E + +++ +++
Sbjct: 707 QKELTLTKSSNDDKETRLRNLKTE--VEGLSLQYSELQNSFVQEKMENDELRKQVSNLKV 764
Query: 753 SLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEK--DNLA 794
++ + E + L A +E + Q+N + EE L K D LA
Sbjct: 765 DIRRKEEEMTKILDARME-ARSQENGHK----EENLSKLSDELA 803
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| TAIR|locus:2038446 AT1G63300 "AT1G63300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2162996 AT5G41140 "AT5G41140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2030541 AT1G22060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0288069 DDB_G0288069 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BKZ5 GOLGB1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 947 | |||
| pfam10358 | 142 | pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 | 2e-16 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-13 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-10 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-08 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 7e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-05 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 1e-05 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 2e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 7e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-05 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 2e-04 | |
| pfam13514 | 1118 | pfam13514, AAA_27, AAA domain | 2e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 4e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-04 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 6e-04 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 7e-04 | |
| PHA02562 | 562 | PHA02562, 46, endonuclease subunit; Provisional | 0.002 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.004 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 0.004 | |
| PLN03229 | 762 | PLN03229, PLN03229, acetyl-coenzyme A carboxylase | 0.004 |
| >gnl|CDD|220715 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 proteins | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-16
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 3/131 (2%)
Query: 8 DKNKIKAVFKLQFQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYV 67
K K+K F L Q L + + D + K V NG +W +
Sbjct: 1 KKKKVKFQFDLSIHELQNVPLVNGELFVKWKRGDKKGNSGTTSKALVNNGRAVWNEEFSI 60
Query: 68 TVKLIREPKTGYIKEKIYHFIVS--TGSSKSGFLGEASIDFADFA-AETEPLTLSLPLKF 124
L + K G + K+ F+V T K LG+A ID A++A ++ L K
Sbjct: 61 PCTLFVDKKGGKFEPKLLTFVVYKVTKKGKKKVLGKADIDLAEYANSKEPTTRRLLLKKC 120
Query: 125 ANSGAVLHVTI 135
+ A L +TI
Sbjct: 121 SKKNATLSITI 131
|
This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light. Length = 142 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|205692 pfam13514, AAA_27, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 947 | |||
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 99.83 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.55 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.48 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.43 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.42 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.37 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.29 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.26 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.24 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.22 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.09 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.07 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.04 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.02 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.95 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.91 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.84 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.77 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.66 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.55 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.54 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.5 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.43 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 98.41 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.41 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.3 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.21 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.17 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 98.16 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.02 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 98.02 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.95 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 97.94 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 97.91 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.91 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.81 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.71 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 97.54 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.49 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.48 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 97.46 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.42 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.16 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.16 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.08 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 97.07 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.07 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.94 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 96.91 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 96.91 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 96.85 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 96.82 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 96.79 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 96.59 | |
| KOG4807 | 593 | consensus F-actin binding protein, regulates actin | 96.56 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 96.51 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 96.49 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 96.43 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 96.39 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 96.35 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 96.31 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 96.25 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 96.23 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.21 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 96.12 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 96.07 | |
| PRK09039 | 343 | hypothetical protein; Validated | 96.02 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 95.98 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 95.97 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.96 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 95.92 | |
| PRK11637 | 428 | AmiB activator; Provisional | 95.71 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 95.69 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 95.57 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 95.56 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 95.55 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.45 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 95.31 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 95.3 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.29 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 95.13 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 94.98 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 94.91 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 94.41 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 94.17 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 94.01 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 93.87 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 93.81 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 93.8 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 93.58 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 93.44 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 93.32 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 93.31 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 93.22 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 93.16 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 93.0 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 92.94 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 92.88 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 92.79 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 92.42 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 92.37 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 92.22 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 92.2 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 91.93 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 91.58 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 91.37 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 90.78 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 90.76 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 90.6 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 90.6 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 90.37 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 90.08 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 89.83 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 89.76 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 89.55 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 88.94 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 88.78 | |
| PF02183 | 45 | HALZ: Homeobox associated leucine zipper; InterPro | 88.65 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 88.59 | |
| KOG2129 | 552 | consensus Uncharacterized conserved protein H4 [Fu | 88.4 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 87.91 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 87.87 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 87.39 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 87.25 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 87.14 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 87.05 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 86.7 | |
| PF07106 | 169 | TBPIP: Tat binding protein 1(TBP-1)-interacting pr | 86.49 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 86.43 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 85.99 | |
| KOG4809 | 654 | consensus Rab6 GTPase-interacting protein involved | 85.68 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 85.46 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 85.39 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 85.04 | |
| PF05266 | 190 | DUF724: Protein of unknown function (DUF724); Inte | 84.95 | |
| PF03148 | 384 | Tektin: Tektin family; InterPro: IPR000435 Tektin | 84.39 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 84.24 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 83.87 | |
| KOG4687 | 389 | consensus Uncharacterized coiled-coil protein [Fun | 83.77 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 83.66 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 83.58 | |
| PF09304 | 107 | Cortex-I_coil: Cortexillin I, coiled coil; InterPr | 82.91 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 82.5 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 82.33 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 82.22 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 82.04 | |
| PF10234 | 267 | Cluap1: Clusterin-associated protein-1; InterPro: | 81.93 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 80.67 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 80.05 |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=179.39 Aligned_cols=136 Identities=27% Similarity=0.359 Sum_probs=126.3
Q ss_pred ccceeEEEEEeeeeeccccCcccceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeee
Q 002248 9 KNKIKAVFKLQFQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFI 88 (947)
Q Consensus 9 K~KiK~vFklqFhAtQVP~~gwdkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfv 88 (947)
+.++|+.|.|.+|..+.....|..++|++--++.+++.+.|..+.|.+|.|.|++++..+++|..|.+++.|++|+|+|+
T Consensus 2 ~~~~kf~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 2 KKAVKFQFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred CceeeEEEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 56789999999998886666899999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc--CCccccccceecchhhhhccc-CCcccccccccC-CCCCeeeeeeeeccCCCCC
Q 002248 89 VSTG--SSKSGFLGEASIDFADFAAET-EPLTLSLPLKFA-NSGAVLHVTIEKMDGATDQ 144 (947)
Q Consensus 89 Vs~G--SSkSgiLGEasINlAdYa~a~-kp~tVSLPLk~c-nsGtvLHVtIQ~L~~~s~~ 144 (947)
|..+ +.+...||.++||||+||+.. +|.++.+||+.| .++|+|||+|++..-.+++
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELREDP 141 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccCC
Confidence 9975 666689999999999999996 999999999999 9999999999998876655
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
| >PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
| >PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences | Back alignment and domain information |
|---|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana | Back alignment and domain information |
|---|
| >PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) | Back alignment and domain information |
|---|
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 4e-18
Identities = 67/326 (20%), Positives = 131/326 (40%), Gaps = 12/326 (3%)
Query: 501 QQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELR 560
+ E + + +E + KE +++ + + +E E + K Q ++AE EL
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN-LLQEKLQAETELY 908
Query: 561 KTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQ--- 617
+ V + E + +M ++ +E E+ + + E + + Q LEE L+
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 618 KANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLE---LDHSSSQLIDEHKSEAQKHE 674
A +L L K K++++ D + + Q K+ E L+ S L E +K +
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 675 ALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKF 734
L+ + + I +L L + K R + + E + + + +L+ +
Sbjct: 1029 NLTKLKNKHESMISELEVR---LKKEEKSRQELEKIKRKLEGES--SDLHEQIAELQAQI 1083
Query: 735 ASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLA 794
A K + AK EEL + + + N ++ L+ + LQ L EK ++
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Query: 795 KQVFQLKDELQKKKEEINRTGKGLKK 820
KQ L +EL+ K E+ T
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTAT 1169
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 947 | |||
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.28 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.21 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.09 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.03 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.45 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 96.03 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.86 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 95.2 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 94.3 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 94.03 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 93.29 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 91.28 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 91.17 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 90.41 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 88.57 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 87.12 | |
| 2eqb_B | 97 | RAB guanine nucleotide exchange factor SEC2; coile | 86.08 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 85.02 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 83.49 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 83.43 | |
| 3tnu_A | 131 | Keratin, type I cytoskeletal 14; coiled-coil, stru | 82.9 | |
| 3i00_A | 120 | HIP-I, huntingtin-interacting protein 1; transcrip | 82.07 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 82.06 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 81.84 | |
| 3tnu_B | 129 | Keratin, type II cytoskeletal 5; coiled-coil, stru | 81.78 | |
| 3tnu_B | 129 | Keratin, type II cytoskeletal 5; coiled-coil, stru | 81.32 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 80.91 |
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-06 Score=109.23 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=31.4
Q ss_pred CchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002248 411 KDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 411 ~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
.+.++..|++++.++...++.....+.+++.++..|....+.+..
T Consensus 855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777776666777777777777666666654
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
| >3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 947 | |||
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 91.88 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 88.16 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 82.14 |
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.098 Score=45.58 Aligned_cols=110 Identities=11% Similarity=0.182 Sum_probs=63.5
Q ss_pred eeeeeccccCcc------cceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee-c
Q 002248 19 QFQCNQVPKLKK------SAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS-T 91 (947)
Q Consensus 19 qFhAtQVP~~gw------dkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs-~ 91 (947)
-.+|..+|..++ .-=||.+--...+..+.| ++..-.+.++.|... ..|.-++.. ....+|.|. .
T Consensus 9 v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~-T~~~~~t~nP~wne~----f~f~i~~~~----~~~L~v~V~d~ 79 (126)
T d1rlwa_ 9 VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKR-TRHFNNDINPVWNET----FEFILDPNQ----ENVLEITLMDA 79 (126)
T ss_dssp EEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEE-CCCCTTCSSCEEEEE----EEEEECTTS----CCEEEEEEEEC
T ss_pred EEEccCCCCccccccCCCCCcEEEEEECCcccceeE-eeecCCCccceecee----eeecccCcc----cCcEEEEEEEC
Confidence 458889987432 223554432222222222 233334445566543 333222211 123445554 3
Q ss_pred cCCccccccceecchhhhhcccCCcccccccccCCCCCeeeeeeeecc
Q 002248 92 GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHVTIEKMD 139 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHVtIQ~L~ 139 (947)
+..+..+||++.|+|+++.. -.+..+.+||+....|.| |++++.+.
T Consensus 80 d~~~d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~~~g~i-~~~l~~~~ 125 (126)
T d1rlwa_ 80 NYVMDETLGTATFTVSSMKV-GEKKEVPFIFNQVTEMVL-EMSLEVAS 125 (126)
T ss_dssp CSSCCEEEEEEEEEGGGSCT-TCEEEEEEEETTTEEEEE-EEEEECCC
T ss_pred CCCCCCeEEEEEEEHHHccC-CCeEEEEEEccCCCeEEE-EEEEEEEe
Confidence 55567899999999999854 678889999998766554 99888654
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|