Citrus Sinensis ID: 002254

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------

MYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPGF

cccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcccccHHHHHHHHHcccccccccEEEEEHHHHHHHHHHHcccccccccccccccHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccEEEEcccccccccHHHHHccccccccccccccccHHHHHHHHHcccccccEEEEEcccEEEEEEEEEEccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccEEEEEEcccccccccccccccccccEEcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHccccccccEEccccHHcccccHHHHHHHHHHccccEEEEcccccccccEEEEEccccccHHHHccccHHccccccccHHHHHHcccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccc

cccccccccccccccccccHHccccEEEEEEccccccHHHHHHHHHHHHccccccccEEEEEccccccHHccccccEEEEEcccEEHHHHHHHHcccccccccEEEEEHHHHHHHHHHHcccccEEEEEcccccHHHHHcccHHHHHHHcHcHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccHEEEEEHcHHHHccccEEEccccHHHHHHccccccHHHHHHHHHcccccHHHHEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccEEEccEEEEEEEccccEEEEEEEEEEccccEccccccccccEEEccHHHHHHHHHHccEEEcHHHHHHHHHHHHHHHHHHcccEEEccHHHHHHHHHHHccccEEEEcccHHHccccHHEEEEEccccccEEEEEcccccccccEEEEEcccccHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccHHHHHHHHHHHHHHHHHHHHHccHHHcccc

myvepsirpddsrygenpnrlqrhtqfqvilkpdpgnsqdLFIRSLSalgidvtehdirfvednwespvlgawGLGWEIWMDGMEITQFTYFqqagslqlspvsVEITYGLERILMLLQGVdhfkkiqyadgitygeLFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASglaipaydQLLKTSHAfnildsrgfvgvTERARYFGRMRSLARQCAQLWLKTRkslghplgivsepvdlpcpKELLEAAVkklpddprlfvleigteemppqdvvNASQQLKDLMLQLLNKQklshgevqafgtpRRLVVFVESLCQkqsenefeargppvskafdqqgnptkAVEGFCqryavpidslvtkaagkTEYVYARVKETARLALEVLSedvpsiisklsfpksmrwnsqvmfsrPIRWIMALHGDVVVPFMFAGVLSgnlsyglrntplatvkvqnaESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNlveapvpvlgefedsfleLPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEInlprfsgdvlpktdvgtVLAVADRLDTLVGLFaagcqpsstndpfglrrISYGLVQILIEKDKNLDLELALRLAAdvqpitvdastinDVHQFVTRRLEQFLvdkgispeIVRSVLSeranlpclatKTAYKMEAlskgqlfpkvveaysrptrivrgkdvdtalEVDETAFETIEEKALWTVYLSAknkihpginvddFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADlpkgivdlsllpgf

myvepsirpddsrygenpnrlqRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIrfvednwespVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHafnildsrgfvGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEigteemppqDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSenefeargppvsKAFDQQGNPTKAVEGFCQRYAVpidslvtkaagkteYVYARVKETARLALevlsedvpsiisklsfpksmrwNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVqnaesyagvmrnagvkikiedrrktifdrsnalaksvngrIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFaltddkgrLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAagcqpsstndpfglRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVrsvlseranlPCLATKTAYKMEalskgqlfpkvveaysrptrivrgkdvdtaLEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKkiadlpkgivdlsllpgf

MYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKdknldlelalrlaadVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPGF

***************************QVIL*******QDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGT**************LKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLC***************************AVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSL****

MYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIV************************RLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSE*E**ARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPGF

********PDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQ**********PVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPGF

*****SI*PDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIV**********************DPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPGF

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		947	2.2.26 [Sep-21-2011]
Q8L785		1067	Glycine--tRNA ligase 2, c	yes	no	0.998	0.886	0.755	0.0
P0CE22		1003	Glycine--tRNA ligase OS=C	yes	no	0.951	0.898	0.341	1e-147
B0B923		1003	Glycine--tRNA ligase OS=C	yes	no	0.951	0.898	0.340	1e-145
Q9PLC6		1003	Glycine--tRNA ligase OS=C	yes	no	0.948	0.895	0.335	1e-141
Q9Z6W0		1010	Glycine--tRNA ligase OS=C	yes	no	0.963	0.902	0.326	1e-140
A4J7C9		695	Glycine--tRNA ligase beta	yes	no	0.711	0.969	0.360	1e-125
B8CXH5		686	Glycine--tRNA ligase beta	yes	no	0.706	0.975	0.367	1e-120
B1I1T4		688	Glycine--tRNA ligase beta	yes	no	0.711	0.979	0.376	1e-120
Q0AWT6		688	Glycine--tRNA ligase beta	yes	no	0.705	0.970	0.357	1e-114
Q2RKV5		694	Glycine--tRNA ligase beta	yes	no	0.711	0.971	0.348	1e-113

>sp\|Q8L785\|SYGM2_ARATH Glycine--tRNA ligase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLYRS-2 PE=1 SV=1	Back alignment and function desciption

 Score = 1514 bits (3919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/946 (75%), Positives = 833/946 (88%)

Query: 2    YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFV 61
            YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQ LFI SLSALGIDVT HDIRFV
Sbjct: 122  YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFV 181

Query: 62   EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGV 121
            EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSL LSPVSVEITYGLERI+MLLQ V
Sbjct: 182  EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLPLSPVSVEITYGLERIIMLLQEV 241

Query: 122  DHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIP 181
            DHFKKI YADGITYGELFLENEKEMS+YYLEHA+V  LQK FD+F+EE+RSLLA GL IP
Sbjct: 242  DHFKKILYADGITYGELFLENEKEMSSYYLEHASVDRLQKHFDYFDEEARSLLALGLPIP 301

Query: 182  AYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSE 241
            AYDQLLKTSHAFNILD+RGF+GVTERARYFGRMRSLARQCAQLWL TR+SLGHPLG+ SE
Sbjct: 302  AYDQLLKTSHAFNILDARGFIGVTERARYFGRMRSLARQCAQLWLATRESLGHPLGVASE 361

Query: 242  PVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLS 301
            PV   C +  LE   +K+ +DPR F++EIGTEEMPPQDV+NAS+QL+ L+L+LL  Q+L 
Sbjct: 362  PVPPVCHRAALEKVAEKVSEDPRSFIIEIGTEEMPPQDVINASEQLRVLVLELLENQRLR 421

Query: 302  HGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVP 361
            HG V+AFGTPRRLVV V+++  KQ E E E RGPP SKAFD +GNPTKA EGF +RY VP
Sbjct: 422  HGAVKAFGTPRRLVVLVDAMSSKQLEEEVEVRGPPASKAFDDEGNPTKAAEGFSRRYGVP 481

Query: 362  IDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIR 421
            ++ L  K +GKTEYV+ARV E ARLALEVLSED+P I++K+SFPKSMRWNS VMFSRPIR
Sbjct: 482  LEKLYRKVSGKTEYVHARVTEPARLALEVLSEDLPGILAKISFPKSMRWNSSVMFSRPIR 541

Query: 422  WIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRR 481
            W+MALHGD+VVPF FAG+ SGN+S GLRNT  A++ VQNAESY   MRN+G+ I+IE+R+
Sbjct: 542  WVMALHGDLVVPFSFAGISSGNVSCGLRNTASASLLVQNAESYEDTMRNSGINIEIEERK 601

Query: 482  KTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKK 541
            K I ++SNALAKSV+GR++  ++LLNEV NLVEAPVP++G+F++SFLELPE+LLT+VM+K
Sbjct: 602  KIILEKSNALAKSVSGRLVVPQNLLNEVANLVEAPVPLIGKFKESFLELPEELLTIVMQK 661

Query: 542  HQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFAD 601
            HQKYF++ D+ G+LLPYFIAVANGAINE VV+KGNEAVLRARYEDAKFFYE+DTRK+F++
Sbjct: 662  HQKYFSIIDESGQLLPYFIAVANGAINEDVVKKGNEAVLRARYEDAKFFYEVDTRKRFSE 721

Query: 602  FQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSV 661
            F+ QL+GILFHEKLGTMLDK  R++ MV KL L L I+ED+L +V++AASLAMSDLAT+V
Sbjct: 722  FRDQLQGILFHEKLGTMLDKMNRLKKMVSKLCLALKIDEDLLPVVEDAASLAMSDLATAV 781

Query: 662  VMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTL 721
            V EFT+L+G+MA HYALRDGYS+QIAEALLEI LPRFSGDV+PKTD G VLA+ DRLD+L
Sbjct: 782  VTEFTALSGIMARHYALRDGYSEQIAEALLEITLPRFSGDVIPKTDAGMVLAIGDRLDSL 841

Query: 722  VGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTIN 781
            VGLFAAGCQPSSTNDPFGLRRISYGLVQIL+EKDKN++ +  L LAA VQP  V+A+T+ 
Sbjct: 842  VGLFAAGCQPSSTNDPFGLRRISYGLVQILVEKDKNVNFKRVLELAASVQPTKVEANTVE 901

Query: 782  DVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEA 841
            DV+QFVTRRLEQ LVD G+SPE+VRSVL+ER N PCLA +TAYK E LSKG++FPK+VEA
Sbjct: 902  DVYQFVTRRLEQLLVDNGVSPEVVRSVLAERGNNPCLAARTAYKTEKLSKGEMFPKIVEA 961

Query: 842  YSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELV 901
            YSRPTRIVRGKDV   +EVDE AFET +E+ LW+ Y S K++IH GI ++DF EIS +LV
Sbjct: 962  YSRPTRIVRGKDVGVGVEVDENAFETPQERTLWSTYTSIKDRIHTGIEIEDFTEISMQLV 1021

Query: 902  QPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPGF 947
            +PLEDFFN+VFVMVEEER+RKNRLALL  IA+LPKG++DLS LPGF
Sbjct: 1022 EPLEDFFNNVFVMVEEERVRKNRLALLNNIANLPKGVIDLSFLPGF 1067

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4

>sp\|P0CE22\|SYG_CHLTR Glycine--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=glyQS PE=3 SV=1	Back alignment and function description

>sp\|B0B923\|SYG_CHLT2 Glycine--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN=glyQS PE=3 SV=1	Back alignment and function description

>sp\|Q9PLC6\|SYG_CHLMU Glycine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=glyQS PE=3 SV=1	Back alignment and function description

>sp\|Q9Z6W0\|SYG_CHLPN Glycine--tRNA ligase OS=Chlamydia pneumoniae GN=glyQS PE=3 SV=2	Back alignment and function description

>sp\|A4J7C9\|SYGB_DESRM Glycine--tRNA ligase beta subunit OS=Desulfotomaculum reducens (strain MI-1) GN=glyS PE=3 SV=1	Back alignment and function description

>sp\|B8CXH5\|SYGB_HALOH Glycine--tRNA ligase beta subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=glyS PE=3 SV=1	Back alignment and function description

>sp\|B1I1T4\|SYGB_DESAP Glycine--tRNA ligase beta subunit OS=Desulforudis audaxviator (strain MP104C) GN=glyS PE=3 SV=1	Back alignment and function description

>sp\|Q0AWT6\|SYGB_SYNWW Glycine--tRNA ligase beta subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyS PE=3 SV=1	Back alignment and function description

>sp\|Q2RKV5\|SYGB_MOOTA Glycine--tRNA ligase beta subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=glyS PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		947
255541030		1069	Glycyl-tRNA synthetase 2, chloroplast/mi	0.998	0.884	0.825	0.0
359489209		1071	PREDICTED: glycyl-tRNA synthetase 2, chl	0.998	0.883	0.818	0.0
449445495		1068	PREDICTED: glycine--tRNA ligase 2, chlor	0.998	0.885	0.770	0.0
356503250		1074	PREDICTED: glycyl-tRNA synthetase 2, chl	0.998	0.880	0.776	0.0
79436767		1067	glycyl-tRNA synthetase 2 [Arabidopsis th	0.998	0.886	0.755	0.0
4678317		1067	aminoacyl-t-RNA synthetase [Arabidopsis	0.998	0.886	0.754	0.0
2654226		1067	aminoacyl-t-RNA synthetase [Arabidopsis	0.998	0.886	0.753	0.0
297815990		1083	aminoacyl-t-RNA synthetase [Arabidopsis	0.998	0.873	0.742	0.0
357119010		1048	PREDICTED: glycyl-tRNA synthetase 2, chl	0.997	0.901	0.707	0.0
218197396		1068	hypothetical protein OsI_21278 [Oryza sa	0.997	0.884	0.693	0.0

>gi\|255541030\|ref\|XP_002511579.1\| Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis] gi\|223548759\|gb\|EEF50248.1\| Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1651 bits (4275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 781/946 (82%), Positives = 875/946 (92%)

Query: 2    YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFV 61
            Y EPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDV+EHDIRFV
Sbjct: 124  YAEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVSEHDIRFV 183

Query: 62   EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGV 121
            EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSP+SVEITYGLERILMLLQGV
Sbjct: 184  EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPISVEITYGLERILMLLQGV 243

Query: 122  DHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIP 181
            DHFKKIQYADGITYGELFLENEKEMSAYYLEHA+V H+QK FDFFEEE+R+LLASGLAIP
Sbjct: 244  DHFKKIQYADGITYGELFLENEKEMSAYYLEHASVQHVQKHFDFFEEEARTLLASGLAIP 303

Query: 182  AYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSE 241
            AYDQLLKTSHAFNILDSRGF+GVTERARYFGRMRSLARQCAQLWLKTR+SLGHPLG VSE
Sbjct: 304  AYDQLLKTSHAFNILDSRGFIGVTERARYFGRMRSLARQCAQLWLKTRESLGHPLGTVSE 363

Query: 242  PVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLS 301
             V L   +E+L+AAVKK+ D PR FVLEIGTEEMPPQDVV+ASQQLKDL++QLL KQ+L 
Sbjct: 364  TVHLASAEEVLDAAVKKVHDGPRSFVLEIGTEEMPPQDVVHASQQLKDLVVQLLEKQRLR 423

Query: 302  HGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVP 361
            HGEVQAFGTPRRLVV VESL  KQ E E E RGPPVSKAFD+QGNPTKA EGFC+RY +P
Sbjct: 424  HGEVQAFGTPRRLVVCVESLSAKQPEIEVEVRGPPVSKAFDEQGNPTKAAEGFCRRYNIP 483

Query: 362  IDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIR 421
            +DSL  KA GKTEY+YARV E ARLALE+LS+D+P  IS++SFPK+MRWNSQVMFSRPIR
Sbjct: 484  LDSLFRKADGKTEYIYARVTEAARLALEILSKDLPVAISRISFPKTMRWNSQVMFSRPIR 543

Query: 422  WIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRR 481
            WIMALHGD+VVPF++AGVLSGN+SYGLRNTP ATV+V+NAESYA +MRNAG+ I+IE+R+
Sbjct: 544  WIMALHGDLVVPFIYAGVLSGNISYGLRNTPSATVEVENAESYASIMRNAGIHIEIEERK 603

Query: 482  KTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKK 541
            ++I + SNALAKSVNG II +E+LLNEVVNLVEAP PVLG+F++SFLELP+DLLT+VM+K
Sbjct: 604  RSILEHSNALAKSVNGHIIIQENLLNEVVNLVEAPFPVLGKFKESFLELPKDLLTMVMQK 663

Query: 542  HQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFAD 601
            HQKYFA+TD+ G+LLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKF++
Sbjct: 664  HQKYFAVTDETGKLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFSE 723

Query: 602  FQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSV 661
            F+ QLKGILFHEKLGTMLDK  R++NMV KLS  LGI ED+LQ VQ+AASLAMSDLAT+V
Sbjct: 724  FRSQLKGILFHEKLGTMLDKMTRIENMVTKLSALLGIREDLLQTVQDAASLAMSDLATAV 783

Query: 662  VMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTL 721
            V EFTSL+G+MA HYALRDGYS+Q+AEALL+I LPRFSGDVLPKTDVG +LAVADRLD+L
Sbjct: 784  VTEFTSLSGIMARHYALRDGYSEQVAEALLDITLPRFSGDVLPKTDVGILLAVADRLDSL 843

Query: 722  VGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTIN 781
            +GLFAAGCQPSSTNDPFGLRRISYGLVQIL+EK++NLDL  ALRLAADVQPI VDA  I+
Sbjct: 844  IGLFAAGCQPSSTNDPFGLRRISYGLVQILVEKERNLDLAHALRLAADVQPIKVDAHLID 903

Query: 782  DVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEA 841
            D +QFVTRRLEQ+LVDK ISPEIVRSVL+ERA LPCLA +TAYKME LS+G LFP+V+EA
Sbjct: 904  DAYQFVTRRLEQYLVDKEISPEIVRSVLAERATLPCLAARTAYKMETLSRGNLFPEVIEA 963

Query: 842  YSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELV 901
            YSRPTRIVRGKDV + +EVDE AFET EE+ALW+++LS K+KI P I VD+F+E+SSEL+
Sbjct: 964  YSRPTRIVRGKDVVSDIEVDEAAFETAEERALWSIFLSTKSKIFPDIEVDEFVEVSSELL 1023

Query: 902  QPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPGF 947
            QPLEDFFN+VFVMVE+ERIRKNRLALLKKIADLP+GI DLS+LPGF
Sbjct: 1024 QPLEDFFNNVFVMVEDERIRKNRLALLKKIADLPRGIADLSVLPGF 1069

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359489209\|ref\|XP_002270774.2\| PREDICTED: glycyl-tRNA synthetase 2, chloroplastic/mitochondrial-like [Vitis vinifera] gi\|297734621\|emb\|CBI16672.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449445495\|ref\|XP_004140508.1\| PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356503250\|ref\|XP_003520424.1\| PREDICTED: glycyl-tRNA synthetase 2, chloroplastic/mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi|79436767|ref|NP_190394.3| glycyl-tRNA synthetase 2 [Arabidopsis thaliana] gi|75154114|sp|Q8L785.1|SYGM2_ARATH RecName: Full=Glycine--tRNA ligase 2, chloroplastic/mitochondrial; AltName: Full=Glycyl-tRNA synthetase 2; Short=GlyRS 2; Flags: Precursor gi|22531150|gb|AAM97079.1| glycine--tRNA ligase precursor, chloroplast (edd1) [Arabidopsis thaliana] gi|45773748|gb|AAS76678.1| At3g48110 [Arabidopsis thaliana] gi|332644848|gb|AEE78369.1| glycyl-tRNA synthetase 2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|4678317\|emb\|CAB41128.1\| aminoacyl-t-RNA synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|2654226\|emb\|CAA05843.1\| aminoacyl-t-RNA synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297815990\|ref\|XP_002875878.1\| aminoacyl-t-RNA synthetase [Arabidopsis lyrata subsp. lyrata] gi\|297321716\|gb\|EFH52137.1\| aminoacyl-t-RNA synthetase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357119010\|ref\|XP_003561239.1\| PREDICTED: glycyl-tRNA synthetase 2, chloroplastic/mitochondrial-like, partial [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|218197396\|gb\|EEC79823.1\| hypothetical protein OsI_21278 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		947
TAIR\|locus:2097885		1067	EDD1 "EMBRYO-DEFECTIVE-DEVELOP	0.998	0.886	0.748	0.0
UNIPROTKB\|Q9PLC6		1003	glyQS "Glycine--tRNA ligase" [	0.958	0.905	0.330	1.5e-131
UNIPROTKB\|Q9Z6W0		1010	glyQS "Glycine--tRNA ligase" [	0.966	0.905	0.329	2.8e-130
UNIPROTKB\|P00961		689	glyS "glycyl-tRNA synthetase,	0.710	0.976	0.334	4.7e-96
TIGR_CMR\|CHY_0440		690	CHY_0440 "glycyl-tRNA syntheta	0.713	0.979	0.327	1e-93
TIGR_CMR\|GSU_0579		687	GSU_0579 "glycyl-tRNA syntheta	0.705	0.972	0.346	4.3e-93
TIGR_CMR\|CBU_1914		689	CBU_1914 "glycyl-tRNA syntheta	0.709	0.975	0.321	2.7e-91
TIGR_CMR\|CPS_0006		688	CPS_0006 "glycyl-tRNA syntheta	0.708	0.975	0.311	3.6e-89
UNIPROTKB\|Q9KVW8		688	glyS "Glycine--tRNA ligase bet	0.708	0.975	0.318	2.3e-87
TIGR_CMR\|VC_0020		688	VC_0020 "glycyl-tRNA synthetas	0.708	0.975	0.318	2.3e-87

TAIR\|locus:2097885 EDD1 "EMBRYO-DEFECTIVE-DEVELOPMENT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3749 (1324.8 bits), Expect = 0., P = 0.
 Identities = 708/946 (74%), Positives = 823/946 (86%)

Query:     2 YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFV 61
             YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQ LFI SLSALGIDVT HDIRFV
Sbjct:   122 YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFV 181

Query:    62 EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGV 121
             EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSL LSPVSVEITYGLERI+MLLQ V
Sbjct:   182 EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLPLSPVSVEITYGLERIIMLLQEV 241

Query:   122 DHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIP 181
             DHFKKI YADGITYGELFLENEKEMS+YYLEHA+V  LQK FD+F+EE+RSLLA GL IP
Sbjct:   242 DHFKKILYADGITYGELFLENEKEMSSYYLEHASVDRLQKHFDYFDEEARSLLALGLPIP 301

Query:   182 AYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSE 241
             AYDQLLKTSHAFNILD+RGF+GVTERARYFGRMRSLARQCAQLWL TR+SLGHPLG+ SE
Sbjct:   302 AYDQLLKTSHAFNILDARGFIGVTERARYFGRMRSLARQCAQLWLATRESLGHPLGVASE 361

Query:   242 PVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLS 301
             PV   C +  LE   +K+ +DPR F++EIGTEEMPPQDV+NAS+QL+ L+L+LL  Q+L 
Sbjct:   362 PVPPVCHRAALEKVAEKVSEDPRSFIIEIGTEEMPPQDVINASEQLRVLVLELLENQRLR 421

Query:   302 HGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVP 361
             HG V+AFGTPRRLVV V+++  KQ E E E RGPP SKAFD +GNPTKA EGF +RY VP
Sbjct:   422 HGAVKAFGTPRRLVVLVDAMSSKQLEEEVEVRGPPASKAFDDEGNPTKAAEGFSRRYGVP 481

Query:   362 IDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIR 421
             ++ L  K +GKTEYV+ARV E ARLALEVLSED+P I++K+SFPKSMRWNS VMFSRPIR
Sbjct:   482 LEKLYRKVSGKTEYVHARVTEPARLALEVLSEDLPGILAKISFPKSMRWNSSVMFSRPIR 541

Query:   422 WIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRR 481
             W+MALHGD+VVPF FAG+ SGN+S GLRNT  A++ VQNAESY   MRN+G+ I+IE+R+
Sbjct:   542 WVMALHGDLVVPFSFAGISSGNVSCGLRNTASASLLVQNAESYEDTMRNSGINIEIEERK 601

Query:   482 KTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKK 541
             K I ++SNALAKSV+GR++  ++LLNEV NLVEAPVP++G+F++SFLELPE+LLT+VM+K
Sbjct:   602 KIILEKSNALAKSVSGRLVVPQNLLNEVANLVEAPVPLIGKFKESFLELPEELLTIVMQK 661

Query:   542 HQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFAD 601
             HQKYF++ D+ G+LLPYFIAVANGAINE VV+KGNEAVLRARYEDAKFFYE+DTRK+F++
Sbjct:   662 HQKYFSIIDESGQLLPYFIAVANGAINEDVVKKGNEAVLRARYEDAKFFYEVDTRKRFSE 721

Query:   602 FQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSV 661
             F+ QL+GILFHEKLGTMLDK  R++ MV KL L L I+ED+L +V++AASLAMSDLAT+V
Sbjct:   722 FRDQLQGILFHEKLGTMLDKMNRLKKMVSKLCLALKIDEDLLPVVEDAASLAMSDLATAV 781

Query:   662 VMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTL 721
             V EFT+L+G+MA HYALRDGYS+QIAEALLEI LPRFSGDV+PKTD G VLA+ DRLD+L
Sbjct:   782 VTEFTALSGIMARHYALRDGYSEQIAEALLEITLPRFSGDVIPKTDAGMVLAIGDRLDSL 841

Query:   722 VGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKXXXXXXXXXXXXXXXVQPITVDASTIN 781
             VGLFAAGCQPSSTNDPFGLRRISYGLVQIL+EK               VQP  V+A+T+ 
Sbjct:   842 VGLFAAGCQPSSTNDPFGLRRISYGLVQILVEKDKNVNFKRVLELAASVQPTKVEANTVE 901

Query:   782 DVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEA 841
             DV+QFVTRRLEQ LVD G+SPE+VRSVL+ER N PCLA +TAYK E LSKG++FPK+VEA
Sbjct:   902 DVYQFVTRRLEQLLVDNGVSPEVVRSVLAERGNNPCLAARTAYKTEKLSKGEMFPKIVEA 961

Query:   842 YSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELV 901
             YSRPTRIVRGKDV   +EVDE AFET +E+ LW+ Y S K++IH GI ++DF EIS +LV
Sbjct:   962 YSRPTRIVRGKDVGVGVEVDENAFETPQERTLWSTYTSIKDRIHTGIEIEDFTEISMQLV 1021

Query:   902 QPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPGF 947
             +PLEDFFN+VFVMVEEER+RKNRLALL  IA+LPKG++DLS LPGF
Sbjct:  1022 EPLEDFFNNVFVMVEEERVRKNRLALLNNIANLPKGVIDLSFLPGF 1067

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004820 "glycine-tRNA ligase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006426 "glycyl-tRNA aminoacylation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009658 "chloroplast organization" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0045995 "regulation of embryonic development" evidence=IMP

UNIPROTKB\|Q9PLC6 glyQS "Glycine--tRNA ligase" [Chlamydia muridarum Nigg (taxid:243161)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Z6W0 glyQS "Glycine--tRNA ligase" [Chlamydia pneumoniae (taxid:83558)]	Back alignment and assigned GO terms

UNIPROTKB\|P00961 glyS "glycyl-tRNA synthetase, beta subunit" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0440 CHY_0440 "glycyl-tRNA synthetase, beta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_0579 GSU_0579 "glycyl-tRNA synthetase, beta subunit" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1914 CBU_1914 "glycyl-tRNA synthetase, beta subunit" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_0006 CPS_0006 "glycyl-tRNA synthetase, beta subunit" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KVW8 glyS "Glycine--tRNA ligase beta subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_0020 VC_0020 "glycyl-tRNA synthetase, beta chain" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L785	SYGM2_ARATH	6, ., 1, ., 1, ., 1, 4	0.7558	0.9989	0.8865	yes	no
B0B923	SYG_CHLT2	6, ., 1, ., 1, ., 1, 4	0.3402	0.9514	0.8983	yes	no
Q9Z6W0	SYG_CHLPN	6, ., 1, ., 1, ., 1, 4	0.3264	0.9630	0.9029	yes	no
Q9PLC6	SYG_CHLMU	6, ., 1, ., 1, ., 1, 4	0.3350	0.9482	0.8953	yes	no
P0CE22	SYG_CHLTR	6, ., 1, ., 1, ., 1, 4	0.3413	0.9514	0.8983	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.1.1	0.976
4th Layer	6.1.1.14	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		947
PRK14908		1000	PRK14908, PRK14908, glycyl-tRNA synthetase; Provis	0.0
PRK01233		682	PRK01233, glyS, glycyl-tRNA synthetase subunit bet	0.0
pfam02092		549	pfam02092, tRNA_synt_2f, Glycyl-tRNA synthetase be	0.0
COG0751		691	COG0751, GlyS, Glycyl-tRNA synthetase, beta subuni	0.0
TIGR00211		691	TIGR00211, glyS, glycyl-tRNA synthetase, tetrameri	1e-173
PRK09348		283	PRK09348, glyQ, glycyl-tRNA synthetase subunit alp	1e-148
pfam02091		284	pfam02091, tRNA-synt_2e, Glycyl-tRNA synthetase al	1e-147
cd00733		279	cd00733, GlyRS_alpha_core, Class II Glycyl-tRNA sy	1e-146
COG0752		298	COG0752, GlyQ, Glycyl-tRNA synthetase, alpha subun	1e-132
TIGR00388		293	TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameri	1e-111
cd00768		211	cd00768, class_II_aaRS-like_core, Class II tRNA am	3e-09
pfam11685		269	pfam11685, DUF3281, Protein of unknown function (D	0.002

>gnl\|CDD\|237859 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional	Back alignment and domain information

 Score = 1015 bits (2627), Expect = 0.0
 Identities = 394/958 (41%), Positives = 567/958 (59%), Gaps = 28/958 (2%)

Query: 2    YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFV 61
            YVEPS RPDD RYG+NPNRLQ +TQFQVILKP PGN Q+L++ SL A+GID+ +HDIRFV
Sbjct: 56   YVEPSRRPDDGRYGQNPNRLQTYTQFQVILKPVPGNPQELYLESLKAIGIDLRDHDIRFV 115

Query: 62   EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGV 121
             D+WE+P +GAWGLGWE+W+DGMEITQFTYFQQAG   L P+S EITYG+ERI M LQ V
Sbjct: 116  HDDWENPTIGAWGLGWEVWLDGMEITQFTYFQQAGGKPLDPISGEITYGIERIAMYLQKV 175

Query: 122  DHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIP 181
            +HFK I + DG+TYGE+F + E EMS Y  + AN     K F+ +  E+  LL +GL +P
Sbjct: 176  NHFKDIAWNDGLTYGEIFQQAEYEMSRYNFDDANTEMWLKHFEDYAAEALRLLDAGLPVP 235

Query: 182  AYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSE 241
            AYD +LK SHAFNILD+RG + VTER RY  R+R LAR  A L+++ R+ LG PL  V  
Sbjct: 236  AYDFVLKASHAFNILDARGAISVTERTRYIARIRQLARAVADLYVEWREELGFPLLKVPP 295

Query: 242  PVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLS 301
            P     PK+  +         P   + EIG+EE+P   V    QQL+  + +LL   +L 
Sbjct: 296  PPAAVTPKKTPD------ICGPETLLFEIGSEELPATFVPIGIQQLESALRELLADTRLG 349

Query: 302  HGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVP 361
            + +++  GTPRRL + VE +  ++ + E E RGP +S AFD  G PT A EGF +   V 
Sbjct: 350  YEKLEVLGTPRRLALLVEDVAPREPDAEREKRGPRLSAAFDADGTPTPAGEGFFRSQGVD 409

Query: 362  IDSL---------VTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN- 411
            I  L           +     EY++    E  R A  +L+ ++P +I  L FPK MRW+ 
Sbjct: 410  ISHLSALDQDGAIEIREINGVEYLFLVRPEPGRDAAAILANELPELIQSLRFPKKMRWDD 469

Query: 412  SQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNA 471
              + ++RPIRW++AL+GD +VP     + SG  + G R      V++ +A+ Y   +R A
Sbjct: 470  PGLSYARPIRWLVALYGDQIVPISVGTLASGRTTRGHRQLDPPPVEIPSADGYVETLRQA 529

Query: 472  GVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELP 531
             V +  ++RR+ I      LA  V    I E  L++EV NLVE P  +LG+F++ FLELP
Sbjct: 530  CVILSPKERREIIVQGLQNLAADVQIDAIAEPRLIDEVTNLVEHPFVILGQFDEKFLELP 589

Query: 532  EDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFY 591
            ++LL   M KHQ+YF + D +G LL +F+ VA+G+ ++ +VR GNE VLRAR  D  F +
Sbjct: 590  KELLIAEMVKHQRYFPVRDAQGTLLNHFVIVADGSPDDEIVR-GNEKVLRARLTDGAFLF 648

Query: 592  EMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAAS 651
            + D +     F  +LK + + E LG++ DK  R++    +L+  L ++    + +  AA 
Sbjct: 649  KADLKTPLETFVEKLKSVTYFEALGSLADKVERIKAHAEELAALLPLSA--RETLDRAAE 706

Query: 652  LAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTV 711
            L   DL + +V EF  L G+M  +YA R G  + +A+AL E  LPR +GD LP +  G +
Sbjct: 707  LCKFDLVSQMVNEFPELQGIMGRYYAQRAGEPEAVAQALGEHELPRTAGDSLPASTTGAL 766

Query: 712  LAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQ 771
            L++ADRLD L+G FA G +P+S++DP+ LRR + G++ +L     +LDLE  L   A   
Sbjct: 767  LSLADRLDNLLGCFALGLKPTSSSDPYALRRQALGVLTLLRATPASLDLEDLLARLARHF 826

Query: 772  P---ITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEA 828
            P   + V  + +++V +FV  RL+  L+D G   + + +VL +    P  A KTA  ++ 
Sbjct: 827  PSTTVWVKEAVLDEVLEFVWGRLKTQLLDLGFDKDEIAAVLPDACKNPAEADKTAQALQE 886

Query: 829  LSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVY--LSAKNKIHP 886
            L   ++F ++  A +R  RI+      +    D +      E  L         +    P
Sbjct: 887  LKSTEIFAEIAAALNRLKRILAS---LSFSVTDASLLLEPAELNLKQALDAFREELTELP 943

Query: 887  GINVDDFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLL 944
             I++ D++  ++EL Q +  FF+ V VM ++E IR  RL LL  I DL  G++D   L
Sbjct: 944  -IDLKDYVAAAAELPQAVNTFFDEVLVMADDEAIRNARLGLLAAIRDLKFGVLDWDAL 1000

Length = 1000

>gnl\|CDD\|234925 PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	Back alignment and domain information

>gnl\|CDD\|216871 pfam02092, tRNA_synt_2f, Glycyl-tRNA synthetase beta subunit	Back alignment and domain information

>gnl\|CDD\|223822 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|232875 TIGR00211, glyS, glycyl-tRNA synthetase, tetrameric type, beta subunit	Back alignment and domain information

>gnl\|CDD\|236473 PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	Back alignment and domain information

>gnl\|CDD\|111033 pfam02091, tRNA-synt_2e, Glycyl-tRNA synthetase alpha subunit	Back alignment and domain information

>gnl\|CDD\|238375 cd00733, GlyRS_alpha_core, Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain	Back alignment and domain information

>gnl\|CDD\|223823 COG0752, GlyQ, Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|129483 TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameric type, alpha subunit	Back alignment and domain information

>gnl\|CDD\|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain	Back alignment and domain information

>gnl\|CDD\|152121 pfam11685, DUF3281, Protein of unknown function (DUF3281)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		947
PRK14908		1000	glycyl-tRNA synthetase; Provisional	100.0
COG0751		691	GlyS Glycyl-tRNA synthetase, beta subunit [Transla	100.0
PRK01233		682	glyS glycyl-tRNA synthetase subunit beta; Validate	100.0
TIGR00211		691	glyS glycyl-tRNA synthetase, tetrameric type, beta	100.0
PF02092		548	tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit;	100.0
COG0752		298	GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl	100.0
TIGR00388		293	glyQ glycyl-tRNA synthetase, tetrameric type, alph	100.0
cd00733		279	GlyRS_alpha_core Class II Glycyl-tRNA synthetase (	100.0
PRK09348		283	glyQ glycyl-tRNA synthetase subunit alpha; Validat	100.0
PF02091		284	tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit	100.0
cd07956		156	Anticodon_Ia_Arg Anticodon-binding domain of argin	99.43
smart00836		122	DALR_1 DALR anticodon binding domain. This all alp	99.34
PF05746		119	DALR_1: DALR anticodon binding domain; InterPro: I	98.92
TIGR00295		164	conserved hypothetical protein TIGR00295. This set	96.48
PRK12705		508	hypothetical protein; Provisional	96.15
PRK12704		520	phosphodiesterase; Provisional	95.95
cd00768		211	class_II_aaRS-like_core Class II tRNA amino-acyl s	95.52
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	95.32
TIGR00488		158	putative HD superfamily hydrolase of NAD metabolis	95.11
PF01966		122	HD: HD domain; InterPro: IPR006674 This domain is	95.1
PRK07152		342	nadD putative nicotinate-nucleotide adenylyltransf	94.94
PRK12703		339	tRNA 2'-O-methylase; Reviewed	94.83
PRK00106		535	hypothetical protein; Provisional	94.81
smart00471		124	HDc Metal dependent phosphohydrolases with conserv	94.81
TIGR00456		566	argS arginyl-tRNA synthetase. This model recognize	94.68
COG0018		577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	94.3
PRK12451		562	arginyl-tRNA synthetase; Reviewed	94.23
PRK13902		900	alaS alanyl-tRNA synthetase; Provisional	93.01
COG1418		222	Predicted HD superfamily hydrolase [General functi	90.68
cd00077		145	HDc Metal dependent phosphohydrolases with conserv	90.66
TIGR03683		902	A-tRNA_syn_arch alanyl-tRNA synthetase. This famil	90.06
PRK01584		594	alanyl-tRNA synthetase; Provisional	89.47
PRK01611		507	argS arginyl-tRNA synthetase; Reviewed	89.0
TIGR00277		80	HDIG uncharacterized domain HDIG. This domain is f	88.95
PLN02286		576	arginine-tRNA ligase	87.46
PRK00252		865	alaS alanyl-tRNA synthetase; Reviewed	87.23
TIGR03401		228	cyanamide_fam HD domain protein, cyanamide hydrata	86.21
TIGR03671		408	cca_archaeal CCA-adding enzyme.	83.54
COG0013		879	AlaS Alanyl-tRNA synthetase [Translation, ribosoma	82.16
PRK10119		231	putative hydrolase; Provisional	81.91
PLN02900		936	alanyl-tRNA synthetase	81.79

>PRK14908 glycyl-tRNA synthetase; Provisional	Back alignment and domain information

Probab=100.00  E-value=0  Score=2928.15  Aligned_cols=932  Identities=42%  Similarity=0.710  Sum_probs=891.2

Q ss_pred             CCCCCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceee
Q 002254            1 MYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW   80 (947)
Q Consensus         1 ~yv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw   80 (947)
                      |||||||||+|||||+|||||||||||||||||||+|+|+|||+||++||||+++|||||||||||||||||||||||||
T Consensus        55 ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~~yl~sl~~~gi~~~~~dirfved~we~p~lga~glgwevw  134 (1000)
T PRK14908         55 AYVEPSRRPDDGRYGQNPNRLQTYTQFQVILKPVPGNPQELYLESLKAIGIDLRDHDIRFVHDDWENPTIGAWGLGWEVW  134 (1000)
T ss_pred             cccCCCCCCCCCCcCCCchhhhhheeeEEEECCCCccHHHHHHHHHHHcCCCccccceeEeecCCCCCcccccccccEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCeeeeeeehhhhccCcccccceeehhhhHHHHHHHHhCCCccceeeeCCCCceecccccchhhhhccccccCCHHHHH
Q 002254           81 MDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQ  160 (947)
Q Consensus        81 ~~gmeitq~tyfqq~gg~~~~~~~~e~tygler~~~~~q~~~~~~~~~~~~~~~y~~~~~~~e~~~s~~~~~~~~~~~~~  160 (947)
                      ||||||||||||||+||++|+||++||||||||||||||+|||||||.||+++||||||+|+|+|||+||||+||+++|+
T Consensus       135 ~~gmeitqftyfqq~gg~~~~~~~~eitygler~~m~~q~~~~~~~~~~~~~~~y~~~~~~~e~~~s~~~~~~~~~~~~~  214 (1000)
T PRK14908        135 LDGMEITQFTYFQQAGGKPLDPISGEITYGIERIAMYLQKVNHFKDIAWNDGLTYGEIFQQAEYEMSRYNFDDANTEMWL  214 (1000)
T ss_pred             ECCeeeeeeeeehhcCCeeccccceeeeccHHHHHHHHhCCCeeeeeecCCCCcchhhccccHHHHHHhcccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCcchhhhhhhhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 002254          161 KQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVS  240 (947)
Q Consensus       161 ~~f~~~~~e~~~~~~~~l~~pay~~~~k~sh~fn~ldar~~~~~~er~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  240 (947)
                      ++|++||+||+||++++||+|||||||||||+|||||||||||||||++||+|||+||+.||++|+++|+++||||++..
T Consensus       215 ~~f~~~~~e~~~~~~~~l~~pay~~~~k~sh~fn~ldar~~i~~~er~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1000)
T PRK14908        215 KHFEDYAAEALRLLDAGLPVPAYDFVLKASHAFNILDARGAISVTERTRYIARIRQLARAVADLYVEWREELGFPLLKVP  294 (1000)
T ss_pred             HHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999766


Q ss_pred             CCCCCCCChhhHhhhhcCCCCCchhhhHhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccccceeeecc
Q 002254          241 EPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVES  320 (947)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~m~~~lLlEIGtEELPa~~v~~a~~~l~~~~~~~L~~~~L~~~~i~~~~TPRRLav~v~~  320 (947)
                      ++.  +.+.    +...+.++++.+||||||||||||++++++.+||++.+.+.|++++|+|+++++|+|||||||+|++
T Consensus       295 ~~~--~~~~----~~~~~~~~~~~dlLlEIGtEELPA~~~~~a~~ql~~~~~~~L~~~~L~~~~i~~f~TPRRLav~v~~  368 (1000)
T PRK14908        295 PPP--AAVT----PKKTPDICGPETLLFEIGSEELPATFVPIGIQQLESALRELLADTRLGYEKLEVLGTPRRLALLVED  368 (1000)
T ss_pred             CCC--CCCC----CCCCCCCCCccCEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcCceEEEecCcEeEEEecC
Confidence            542  1111    2245566788999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcchhhhhcCCccccccccCCCCcHHHHHHHHHCCCCccCceE---------EeeCCeeEEEEEEEecchhHHHHH
Q 002254          321 LCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVT---------KAAGKTEYVYARVKETARLALEVL  391 (947)
Q Consensus       321 l~~~q~d~~~e~kGP~v~~Afd~dG~pTkAa~GFak~~Gv~~~~l~~---------~~~~kgeyl~~~~~~~G~~t~eiL  391 (947)
                      |+++|+|.++++||||+++|||++|+||||++|||||||+++++|.+         ++++||+|+|++++++|++|.++|
T Consensus       369 l~~~q~d~~~e~kGP~~~~AfD~dG~pTkAa~GFars~Gv~~~dL~~~~~~~~~~~~~~kg~eyl~~~k~~~G~~t~elL  448 (1000)
T PRK14908        369 VAPREPDAEREKRGPRLSAAFDADGTPTPAGEGFFRSQGVDISHLSALDQDGAIEIREINGVEYLFLVRPEPGRDAAAIL  448 (1000)
T ss_pred             CcccCCCceeeeeCCcHHHhCccCCCcCHHHHHHHHHcCCCHHHHHHhhcccccccccCCCcEEEEEEEEECCeEHHHHH
Confidence            99999999999999999999999999999999999999999999988         544555999999999999999999


Q ss_pred             HhHHHHHHhcCCCCccccc-CCCCcccchhhhHHHHcCCceeeeEEeceeeCCcccccccCCCCcEEeCChhHHHHHHHh
Q 002254          392 SEDVPSIISKLSFPKSMRW-NSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRN  470 (947)
Q Consensus       392 ~eil~~~I~~L~fpK~MRW-~~~~~F~RPIrwIvaL~g~~Vvp~~~~gi~sgn~T~GHRf~~~~~i~I~~a~~Y~~~L~~  470 (947)
                      +++++++|++|||||+||| +++++|+|||||||||||++||||+++||+|||+|+||||+++++|+|++|++|.+.|++
T Consensus       449 ~eil~~~I~~L~fpKsMRWg~~~~~FvRPIrWIvaLlg~eVIp~~i~gi~Sg~~T~GHRfl~~~~i~I~~a~~Y~~~L~~  528 (1000)
T PRK14908        449 ANELPELIQSLRFPKKMRWDDPGLSYARPIRWLVALYGDQIVPISVGTLASGRTTRGHRQLDPPPVEIPSADGYVETLRQ  528 (1000)
T ss_pred             HHHHHHHHHcCCCCCcceeCCCCcEEechHHHHHHHcCCceeEEEEecEEecCcccccccCCCCCeEeCCHHHHHHHHHh
Confidence            9999999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeecCHhHHHHHHHHHHHHHHHhcCCeecCCCchHHHhhhcccCCceeecccCccCCCCcHHHHHHHHHhCcceeEEEC
Q 002254          471 AGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTD  550 (947)
Q Consensus       471 ~~VIvd~~eRr~~I~~qi~~lA~~~g~~v~~de~LLeEVt~LVE~P~~l~G~Fde~FL~LP~EVLit~Mk~HQRYFpv~d  550 (947)
                      ++||+|+++||++|++|++++|+++|+++..|++||||||+|||||++++|+||++||+||+|||||+|++|||||||+|
T Consensus       529 ~~VIvD~~eRr~~I~~qi~~la~~~g~~v~~de~LLdEVt~LVE~P~al~G~Fde~FL~LP~EVLit~Mk~HQRYFpv~d  608 (1000)
T PRK14908        529 ACVILSPKERREIIVQGLQNLAADVQIDAIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIAEMVKHQRYFPVRD  608 (1000)
T ss_pred             CCEECCHHHHHHHHHHHHHHHHHHcCCeeCCCHHHHHHHHhccCCCeeeEEeeCHHHhCCCHHHHHHHHHHcceEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccEEEEEcCCCCchhhhchhhhhhhhhccccHhHHHhhhcCChHHHHhcccCcccccCCCCHHHHHHHHHHHHH
Q 002254          551 DKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVR  630 (947)
Q Consensus       551 ~~G~L~p~FI~VsN~~~~~~~Vi~GNErVLrARL~DA~FF~~~D~K~~L~~~v~kLk~VvF~~kLGSl~DK~~Ri~~La~  630 (947)
                      ++|+|+|+||+|+|+.++. .|++||||||||||+||+|||++|+|+||++|+++|++||||++||||+|||+||++||.
T Consensus       609 ~~G~Llp~FI~VsN~~~~~-~Vi~GNErVLrARL~DA~FF~~~DlK~~L~~~vekL~~VvFq~kLGS~~dKv~Ri~~La~  687 (1000)
T PRK14908        609 AQGTLLNHFVIVADGSPDD-EIVRGNEKVLRARLTDGAFLFKADLKTPLETFVEKLKSVTYFEALGSLADKVERIKAHAE  687 (1000)
T ss_pred             CCCCccceEEEEECCCCcc-ceeecchhhhHhHHhHHHHHHHHhccCCHHHHHHHhCceEeehhcCCHHHHHHHHHHHHH
Confidence            9999999999999997654 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHhhhhhcchhhhhcChhhhhHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCchhHH
Q 002254          631 KLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGT  710 (947)
Q Consensus       631 ~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~  710 (947)
                      +||+.+|.+.+  ..+.|||.||||||+|+||+||||||||||+|||+++||+++||+||+|||+||++||.||+|++|+
T Consensus       688 ~La~~l~~~~~--~~~~RAA~LsKaDLvT~MV~EFPELQGiMG~yYA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~  765 (1000)
T PRK14908        688 ELAALLPLSAR--ETLDRAAELCKFDLVSQMVNEFPELQGIMGRYYAQRAGEPEAVAQALGEHELPRTAGDSLPASTTGA  765 (1000)
T ss_pred             HHHHHhCCChh--HHHHHHHHHhhhhcccchhccChHhhHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCCCCCchHHH
Confidence            99999988643  2358999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCChhhhhHHHHHHHHHHHhCCCCCCHHHHHHHHHhhCC---CCcCccchhhHHHHH
Q 002254          711 VLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQP---ITVDASTINDVHQFV  787 (947)
Q Consensus       711 iLslADKlDtLvG~F~iG~~PTGS~DPfALRRaAlGIirIl~e~~~~l~L~~li~~a~~~~~---~~~~~~~~~~v~~F~  787 (947)
                      +||||||||||+|||+||++||||+|||||||+|+||||||+++++++||.+++++|++.+.   ...+.++.++|++||
T Consensus       766 ilalADKlDTLvG~FaiG~~PTGSkDPfALRRaAlGIirIl~e~~l~l~L~~ll~~a~~~~~~~~~~~~~~~~~~l~~Fi  845 (1000)
T PRK14908        766 LLSLADRLDNLLGCFALGLKPTSSSDPYALRRQALGVLTLLRATPASLDLEDLLARLARHFPSTTVWVKEAVLDEVLEFV  845 (1000)
T ss_pred             HHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998873   111335667899999


Q ss_pred             HHHHHHHHHhcCCCHHHHHhhhcCCCCCHHhHHHHHHHHHHHhcCCChHHHHHHHhhhhhcccCCCCCCccCCCcccCCC
Q 002254          788 TRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFET  867 (947)
Q Consensus       788 ~~RL~~~l~d~g~~~dii~AVL~~~~~~~~~~~~r~~aL~~~~~~~~f~~l~~a~kRv~NIlkk~~~~~~~~vd~~lf~~  867 (947)
                      .+||+++|.++|+++|+|+|||+.+.+||+++.+|+++|++|.++++|++++++||||+||++|.+.   ..+|+++|++
T Consensus       846 ~~Rl~~~l~d~G~~~dvI~AVl~~~~~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~~---~~vd~~Lf~~  922 (1000)
T PRK14908        846 WGRLKTQLLDLGFDKDEIAAVLPDACKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLSF---SVTDASLLLE  922 (1000)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcCC---CccChhhcCC
Confidence            9999999999999999999999988889999999999999999999999999999999999998641   2699999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCC-CChhHHHHHHHhhchHHhhhhccccccCCcHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 002254          868 IEEKALWTVYLSAKNKIHPG-INVDDFIEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLL  944 (947)
Q Consensus       868 ~~E~~L~~~~~~~~~~~~~~-~~~~~y~~al~~L~~~Id~FFD~VmVm~eD~~IR~NRLaLL~~i~~lf~~iaDfs~L  944 (947)
                      ++|++||+++.++++.+.+. -++.+++.+|+.|++|||+|||+||||+||++||+|||+||+.|.++|.+|||||+|
T Consensus       923 ~~E~~L~~a~~~~~~~~~~~~~dy~~al~~La~L~~~Id~FFD~VmVm~eD~~iR~NRLaLL~~i~~lf~~vaDfs~L 1000 (1000)
T PRK14908        923 PAELNLKQALDAFREELTELPIDLKDYVAAAAELPQAVNTFFDEVLVMADDEAIRNARLGLLAAIRDLKFGVLDWDAL 1000 (1000)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHhCCCEeeCCCHHHHHHHHHHHHHHHHHHHhhcchhcC
Confidence            99999999999998777643 233344555778999999999999999999999999999999999999999999986

>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated	Back alignment and domain information

>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit	Back alignment and domain information

>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit	Back alignment and domain information

>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain	Back alignment and domain information

>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated	Back alignment and domain information

>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases	Back alignment and domain information

>smart00836 DALR_1 DALR anticodon binding domain	Back alignment and domain information

>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00295 conserved hypothetical protein TIGR00295	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>TIGR00488 putative HD superfamily hydrolase of NAD metabolism	Back alignment and domain information

>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []	Back alignment and domain information

>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated	Back alignment and domain information

>PRK12703 tRNA 2'-O-methylase; Reviewed	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>TIGR00456 argS arginyl-tRNA synthetase	Back alignment and domain information

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12451 arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK13902 alaS alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>COG1418 Predicted HD superfamily hydrolase [General function prediction only]	Back alignment and domain information

>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase	Back alignment and domain information

>PRK01584 alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK01611 argS arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00277 HDIG uncharacterized domain HDIG	Back alignment and domain information

>PLN02286 arginine-tRNA ligase	Back alignment and domain information

>PRK00252 alaS alanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family	Back alignment and domain information

>TIGR03671 cca_archaeal CCA-adding enzyme	Back alignment and domain information

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK10119 putative hydrolase; Provisional	Back alignment and domain information

>PLN02900 alanyl-tRNA synthetase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		947
1j5w_A		298	Crystal Structure Of Glycyl-Trna Synthetase Alpha C		3e-77
3rf1_A		311	The Crystal Structure Of Glycyl-Trna Synthetase Sub		1e-66

>pdb|1J5W|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain (Tm0216) From Thermotoga Maritima At 1.95 A Resolution Length = 298

Back alignment and structure

Iteration: 1

Score = 286 bits (733), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 129/234 (55%), Positives = 175/234 (74%) Query: 2 YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFV 61 YV+PS RP D RYGENPNRLQR+ Q+QVI+KP P NSQ+L++ SL LGI++ EHDIRFV Sbjct: 64 YVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFV 123 Query: 62 EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGV 121 EDNWESP LGAWG+GWE+W+DG EITQFTYFQQ G + L + +EITYGLERI LQGV Sbjct: 124 EDNWESPTLGAWGVGWEVWLDGXEITQFTYFQQIGGISLKDIPLEITYGLERIAXYLQGV 183 Query: 122 DHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIP 181 D+ ++Q+ + + YG++FLENE+E S + E ANV L + FD +E+E L+ L +P Sbjct: 184 DNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLP 243 Query: 182 AYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHP 235 AYD +LK SH FN+LD+RG + V++R Y R+++ AR+ A+++L+ + + P Sbjct: 244 AYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAXARKAARVFLEVQANENSP 297

PyMOL of 1j5w

>pdb|3RF1|A Chain A, The Crystal Structure Of Glycyl-Trna Synthetase Subunit Alpha From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 Length = 311

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		947
1j5w_A		298	Glycyl-tRNA synthetase alpha chain; structural gen	1e-125
3rf1_A		311	Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA	1e-118
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Length = 298	Back alignment and structure

 Score =  379 bits (974), Expect = e-125
 Identities = 131/234 (55%), Positives = 178/234 (76%)

Query: 2   YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFV 61
           YV+PS RP D RYGENPNRLQR+ Q+QVI+KP P NSQ+L++ SL  LGI++ EHDIRFV
Sbjct: 64  YVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFV 123

Query: 62  EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGV 121
           EDNWESP LGAWG+GWE+W+DGMEITQFTYFQQ G + L  + +EITYGLERI M LQGV
Sbjct: 124 EDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGV 183

Query: 122 DHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIP 181
           D+  ++Q+ + + YG++FLENE+E S +  E ANV  L + FD +E+E   L+   L +P
Sbjct: 184 DNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLP 243

Query: 182 AYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHP 235
           AYD +LK SH FN+LD+RG + V++R  Y  R++++AR+ A+++L+ + +   P
Sbjct: 244 AYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSP 297

PyMOL of 1j5w

>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* Length = 311	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		947
1j5w_A		298	Glycyl-tRNA synthetase alpha chain; structural gen	100.0
3rf1_A		311	Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA	100.0
2ztg_A		739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	99.91
2o08_A		188	BH1327 protein; putative HD superfamily hydrolase,	95.72
2ogi_A		196	Hypothetical protein SAG1661; structural genomics,	95.62
3dto_A		223	BH2835 protein; all alpha-helical protein, structu	95.39
3ccg_A		190	HD superfamily hydrolase; NP_347894.1, HD domain,	95.25
2pq7_A		220	Predicted HD superfamily hydrolase; 104161995, HD	95.22
3hc1_A		305	Uncharacterized HDOD domain protein; HDOD domain p	94.69
3tm8_A		328	BD1817, uncharacterized protein; HD-GYP, phosphodi	94.54
3b57_A		209	LIN1889 protein; Q92AN1, X-RAY, NESG, structural g	94.5
2pjq_A		231	Uncharacterized protein LP_2664; LPR71, NESG, stru	94.19
3dsq_A		288	Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t	94.17
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	94.03
3djb_A		223	Hydrolase, HD family; all alpha-helical protein.,	93.19
1vqr_A		297	Hypothetical protein CJ0248; HD-domain/pdease-like	92.95
3fnr_A		464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	92.75
1iq0_A		592	Arginyl-tRNA synthetase; riken structural genomics	92.3
2zze_A		752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	92.12
3m1t_A		275	Putative phosphohydrolase; structural genomics, jo	92.12
3i7a_A		281	Putative metal-dependent phosphohydrolase; YP_9268	91.52
2zue_A		629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	91.16
2qgs_A		225	Protein Se1688; alpha-helical protein, structural	89.75
3hy0_A		441	Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase,	89.28
3gw7_A		239	Uncharacterized protein YEDJ; all alpha-helical pr	88.75
3ljx_A		288	MMOQ response regulator; structural genomics, PSI-	85.75
3qtc_A		290	Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet	84.0
3mem_A		457	Putative signal transduction protein; structural g	83.85
1yfs_A		465	Alanyl-tRNA synthetase; alpha-beta fold, helix-loo	81.06
2paq_A		201	5'-deoxynucleotidase YFBR; HD domain phosphoh stru	80.19

>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1	Back alignment and structure

Probab=100.00  E-value=1.8e-136  Score=1062.82  Aligned_cols=236  Identities=56%  Similarity=1.012  Sum_probs=225.6

Q ss_pred             CCCCCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceee
Q 002254            1 MYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW   80 (947)
Q Consensus         1 ~yv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw   80 (947)
                      |||||||||+|||||||||||||||||||||||||+|+|||||+||++||||+++|||||||||||||||||||||||||
T Consensus        63 AYVqPsRRP~DGRYGeNPNRLq~y~QfQVilKPsP~niQeLYL~SL~alGid~~~HDIRFVEDnWEsPTLGAwGLGWEVW  142 (298)
T 1j5w_A           63 AYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVW  142 (298)
T ss_dssp             EEEEEEECCC-----CCTTCCSEEEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEE
T ss_pred             eeeccCCCCCCCCcCCCchhhhhheeeEEEECCCCccHHHHHHHHHHHhCCCcccCCceeeccCCCCCccccccccceee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCeeeeeeehhhhccCcccccceeehhhhHHHHHHHHhCCCccceeeeCCCCceecccccchhhhhccccccCCHHHHH
Q 002254           81 MDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQ  160 (947)
Q Consensus        81 ~~gmeitq~tyfqq~gg~~~~~~~~e~tygler~~~~~q~~~~~~~~~~~~~~~y~~~~~~~e~~~s~~~~~~~~~~~~~  160 (947)
                      ||||||||||||||+||++|+|||+||||||||||||||+|||||||.||+++||||||+|+|+|+|+||||+||+++|+
T Consensus       143 ldGMEITQFTYFQQvGGi~c~pv~~EITYGLERiamylQ~vd~vydl~w~~~vtYGdvf~q~E~E~S~ynFe~ad~~~L~  222 (298)
T 1j5w_A          143 LDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLF  222 (298)
T ss_dssp             ETTEEEEEEEEEEEBTTBCCSSCCEEEEEEHHHHHHHHHTCSSGGGCEEETTEEHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             EcceeeehhhhhhhcCCcccCccceeecccHHHHHHHHhCCCceeccccCCCCceehhhcccHHHHHHhcccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCcchhhhhhhhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002254          161 KQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPL  236 (947)
Q Consensus       161 ~~f~~~~~e~~~~~~~~l~~pay~~~~k~sh~fn~ldar~~~~~~er~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  236 (947)
                      ++|+.||+||++|++++|++||||+||||||+|||||||||||||||++||+|||+|||+||++|+++|+++||||
T Consensus       223 ~~F~~yE~E~~~ll~~~L~lPAYd~~LK~SH~FNlLDARgaISvtER~~yI~rvR~la~~~a~~y~~~r~~~g~pl  298 (298)
T 1j5w_A          223 RHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSPA  298 (298)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999997

PyMOL of 1j5w

>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*	Back alignment and structure

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}	Back alignment and structure

>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}	Back alignment and structure

>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1	Back alignment and structure

>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1	Back alignment and structure

>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}	Back alignment and structure

>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A	Back alignment and structure

>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1	Back alignment and structure

>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1	Back alignment and structure

>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A	Back alignment and structure

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*	Back alignment and structure

>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1	Back alignment and structure

>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3	Back alignment and structure

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}	Back alignment and structure

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1	Back alignment and structure

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*	Back alignment and structure

>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0	Back alignment and structure

>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}	Back alignment and structure

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A	Back alignment and structure

>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1	Back alignment and structure

>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*	Back alignment and structure

>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}	Back alignment and structure

>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A	Back alignment and structure

>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*	Back alignment and structure

>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}	Back alignment and structure

>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A	Back alignment and structure

>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		947
d1j5wa_		281	d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alph	1e-127
d1f7ua1		124	a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgR	0.002

>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Length = 281	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS) alpha chain
species: Thermotoga maritima [TaxId: 2336]

 Score =  384 bits (989), Expect = e-127
 Identities = 130/230 (56%), Positives = 177/230 (76%)

Query: 2   YVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFV 61
           YV+PS RP D RYGENPNRLQR+ Q+QVI+KP P NSQ+L++ SL  LGI++ EHDIRFV
Sbjct: 52  YVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFV 111

Query: 62  EDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGV 121
           EDNWESP LGAWG+GWE+W+DGMEITQFTYFQQ G + L  + +EITYGLERI M LQGV
Sbjct: 112 EDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGV 171

Query: 122 DHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIP 181
           D+  ++Q+ + + YG++FLENE+E S +  E ANV  L + FD +E+E   L+   L +P
Sbjct: 172 DNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLP 231

Query: 182 AYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKS 231
           AYD +LK SH FN+LD+RG + V++R  Y  R++++AR+ A+++L+ + +
Sbjct: 232 AYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQAN 281

PyMOL of d1j5wa_

>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		947
d1j5wa_		281	Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo	100.0
d1f7ua1		124	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	97.46
d2pjqa1		215	Uncharacterized protein LP2664 {Lactobacillus plan	95.52
d2pq7a1		217	Predicted hydrolase mes0020 {Uncultured thermotoga	94.05
d1riqa2		236	Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [	94.0
d2qgsa1		216	Uncharacterized protein SE1688 {Staphylococcus epi	93.94
d3b57a1		201	Uncharacterized protein Lin1889 {Listeria innocua	93.83
d1iq0a1		126	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	92.61
d3djba1		213	Uncharacterized protein BT9727_1981 {Bacillus thur	89.39
d3dtoa1		212	Uncharacterized protein BH2835 {Bacillus haloduran	89.32

>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS) alpha chain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.3e-135  Score=1051.76  Aligned_cols=231  Identities=56%  Similarity=1.029  Sum_probs=224.6

Q ss_pred             CCCCCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceee
Q 002254            1 MYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW   80 (947)
Q Consensus         1 ~yv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw   80 (947)
                      |||||||||+|||||+|||||||||||||||||||+|+|+|||+||++||||+++|||||||||||||||||||||||||
T Consensus        51 ayvqpsrRP~DgRYg~NPNRlq~y~QfQVi~KPsp~n~q~lyL~SL~~igid~~~hDIrfvEDnWEsPtlGAwGlGWEVw  130 (281)
T d1j5wa_          51 AYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVW  130 (281)
T ss_dssp             EEEEEEECCC-----CCTTCCSEEEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEE
T ss_pred             cccccccCCccccccCCcchhhhhhheeeeecCCcccHHHHHHHHHHHcCCCccccceEEEeccCcCCcccceeeeeEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCeeeeeeehhhhccCcccccceeehhhhHHHHHHHHhCCCccceeeeCCCCceecccccchhhhhccccccCCHHHHH
Q 002254           81 MDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQ  160 (947)
Q Consensus        81 ~~gmeitq~tyfqq~gg~~~~~~~~e~tygler~~~~~q~~~~~~~~~~~~~~~y~~~~~~~e~~~s~~~~~~~~~~~~~  160 (947)
                      ||||||||||||||+||++|+|||+||||||||||||||+|||||||.||+++||||||+|+|+|||+||||+||+++|+
T Consensus       131 ldGMEItQFTYFQQvGg~~c~pv~~EiTYGLERiaMylQ~vd~v~Dl~wn~~vtYgDvf~q~E~E~S~YNFE~Ad~~~L~  210 (281)
T d1j5wa_         131 LDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLF  210 (281)
T ss_dssp             ETTEEEEEEEEEEEBTTBCCSSCCEEEEEEHHHHHHHHHTCSSGGGCEEETTEEHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             EcCeeeeeeehhhhhcCccccccchhhhhhHHHHHHHHhCcchheeeeccCCcchHHHHHHhHHHHHHHhHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCcchhhhhhhhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 002254          161 KQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKS  231 (947)
Q Consensus       161 ~~f~~~~~e~~~~~~~~l~~pay~~~~k~sh~fn~ldar~~~~~~er~~~~~~~r~~~~~~~~~~~~~~~~  231 (947)
                      ++|++||+||++|++++|++||||+||||||+|||||||||||||||++||+|||+|||+||++|+++|++
T Consensus       211 ~~F~~yE~Ea~~Lle~~L~lPAYD~~LKaSH~FNLLDARGaISVTERa~YI~RIR~LAk~~a~~yle~r~n  281 (281)
T d1j5wa_         211 RHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQAN  281 (281)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999973

PyMOL of d1j5wa_

>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}	Back information, alignment and structure

>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}	Back information, alignment and structure

>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}	Back information, alignment and structure

>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]}	Back information, alignment and structure

>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure