Citrus Sinensis ID: 002269

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940----
MGLDARTFASCNNIPQYRKRNISMNAYSLSCEISSENGDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGDSDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSDDEEDDIMMDDATPVQNSLEMNGGEVSDVDEETQMDLSGPELSHSLPAHLGLDPIKMKEMRMVMFQEEEEIDDFSGTPSRQQWSLGKEYIRPPLQNTAQRMSQRSSSPLARKTPVGLLEYHPGNSDSDSPGMILMAQQNKGMPLKKLKSDGFKLDLKHETPVTGSHSHNIVDAGLFMGRAFRVGWGPNGILVHSGAPVGSNSRGVISSVINVEKVAIDKVVRDENDKVRKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSSTRLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLIRSSLQEENNTMKFS
cccccccccccccccccccccccccccccccccccccccccccccccccEEcccHHHHHcccccccccccccccEEEEEEEEEEEEEcccccccccccccEEEEcccEEEEcccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHcccEEEEEcccccEEEEEEccEEccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccHHHHccccccccccccccEEEccccccccccccccccccccEEcccccccccHHHHHHHHcccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccc
cccccccEcccccccccccccccccccccccccccccccccccccccccEEcccHHHHHHcccccccccEEEccEEEEEcccEEEEEcccEEEccccHccEEEEEccEEEEEccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHcccEEEEEcccccEEEEEEccccEccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHcccccEcccccccEEEcccccccccccccccccccccEEccccccccccccHHHHHHHHHccccHHHHHcccccccccccccccccccccccccccccHcHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHcccccccccccccccHHHHHHHHHHHHcccccccccHHHHHcccccccccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHEEEEEHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHcccccHcccccccccHHHHHHHHHHHHHccccccEEcc
mgldartfascnnipqyrkrnismNAYSLSCEissengdslpvlcspdyytepllndlgkrevidpgyssrvpdftvgrlgYGYVKflgntdvrwLDLDQIVKFGRHEIvvyedesskpevgqglNKAAEVTLFLQGRYLSlklkegdsdDFVKKMKERTerqgarfvsfdpvsgEWKFLVVHFsrfglsddeeddimmddatpvqnslemnggevsdvdeetqmdlsgpelshslpahlgldpikmKEMRMVMFQEEeeiddfsgtpsrqqwslgkeyirpplqntaqrmsqrsssplarktpvglleyhpgnsdsdspgMILMAQQnkgmplkklksdgfkldlkhetpvtgshshnivDAGLFMGrafrvgwgpngilvhsgapvgsnsrgvISSVINVEKVAIDKVVRDENDKVRKELVDfsfdaplnlhkelnheteevevgsyKLKLQKVVSNSLMLSEICRSYIDIIEAqldvpgvsssTRLVLMHQVMVWELIKVLFSerenggqlrsegddneEEMMQDikdgppefdlealplIRRAEFSCWLKESVCHRvqedvssldesnYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLsqaggstvsrsdiahqldlwrvngldfkfiEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMwyqlppetsLAIVFQTYQHLlddgkaplpvpiyvdegpidepidwsgnernDLSYYLMLLHASGESKFGSLKTMFNALsstydpldyhmiWHQREVLAAVGvissndlqiLDMGLVSQLLCQGKCHWAIYVVLhmprcddypYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLIRSSLqeenntmkfs
mgldartfascnnipqyrkrNISMNAYSLSCEISSENGDSLPVLCSPDYYTEPLLNDLgkrevidpgyssrvpdftvgRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYedesskpevgqGLNKAAEVTLFLQGRYLSlklkegdsddFVKKMKErterqgarfvsfdpvsgeWKFLVVHFSRFGLSDDEEDDIMMDDATPVQNSLEMNGGEVSDVDEETQMDLsgpelshslpahlGLDPIKMKEMRMVMFQEEeeiddfsgtpSRQQWSLGKEYIRPPLQNTAQRMSQRSSSPLARKTPVGLLEYHPGNSDSDSPGMILMAQQNKGMPLKKLKSDGFKLDLKHetpvtgshshnIVDAGLFMGRAFRVGWGPNGILVHSgapvgsnsrgVISSVinvekvaidkvvrdendkVRKElvdfsfdaplnlhkelnheteevevgsykLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSSTRLVLMHQVMVWELIKVLfserenggqlrsegddneEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQaggstvsrsdiahqldlwrvngldFKFIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLIRSslqeenntmkfs
MGLDARTFASCNNIPQYRKRNISMNAYSLSCEISSENGDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGDSDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSddeeddimmddATPVQNSLEMNGGEVSDVDEETQMDLSGPELSHSLPAHLGLDPIKMKEMRMVMFQEEEEIDDFSGTPSRQQWSLGKEYIRPPLQNTAQRMSQRSSSPLARKTPVGLLEYHPGNSDSDSPGMILMAQQNKGMPLKKLKSDGFKLDLKHETPVTGSHSHNIVDAGLFMGRAFRVGWGPNGILVHSGAPVGSNSRGVISSVINVEKVAIDKVVRDENDKVRKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSSTRLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLIRSSLQEENNTMKFS
*********SCNNIPQYRKRNISMNAYSLSCEISSENGDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYE**********GLNKAAEVTLFLQGRYLSLKL********************ARFVSFDPVSGEWKFLVVHFSRFGL**********************************************************************************************************************************************************************HSHNIVDAGLFMGRAFRVGWGPNGILVHSGAPVGSNSRGVISSVINVEKVAIDKVVRDENDKVRKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSSTRLVLMHQVMVWELIKVLFS******************************DLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLIR*************
*********************************************SPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPEVGQGLNKAAEVTLFL********************MKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLS*****************************************************************************************************************************************************************************GLFMGRAFRVGWGPNGILVHSGAPVG*************************************FDA*******************YKLKLQKVVSNSLMLSEICRSYIDIIEA**************LMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVC****************KHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVD************NERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLIRS************
********ASCNNIPQYRKRNISMNAYSLSCEISSENGDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYE**********GLNKAAEVTLFLQGRYLSLKLKEGDSDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSDDEEDDIMMDDATPVQNSLEMNGGEVSDVDEETQMDLSGPELSHSLPAHLGLDPIKMKEMRMVMFQEEE************QWSLGKEYIRPPLQN**************RKTPVGLLEYHPGNSDSDSPGMILMAQQNKGMPLKKLKSDGFKLDLKHETPVTGSHSHNIVDAGLFMGRAFRVGWGPNGILVHSGAPVGSNSRGVISSVINVEKVAIDKVVRDENDKVRKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSSTRLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLIRSSLQE********
****************************************LPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGDSDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLS*****************************************************PIK*K**RMVMFQE*************************************************************************************KLD**HETPVTGSHSHNIVDAGLFMGRAFRVGWGPNGILVHSGAPVG******ISSVINVEKVAIDKVVRDENDKVRKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSSTRLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEP**WSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLIRSSLQEEN***KF*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLDARTFASCNNIPQYRKRNISMNAYSLSCEISSENGDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGDSDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSDDEEDDIMMDDATPVQNSLEMNGGEVSDVDEETQMDLSGPELSHSLPAHLGLDPIKMKEMRMVMFQEEEEIDDFSGTPSRQQWSLGKEYIRPPLQNTAQRMSQRSSSPLARKTPVGLLEYHPGNSDSDSPGMILMAQQNKGMPLKKLKSDGFKLDLKHETPVTGSHSHNIVDAGLFMGRAFRVGWGPNGILVHSGAPVGSNSRGVISSVINVEKVAIDKVVRDENDKVRKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSSTRLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLIRSSLQEENNTMKFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query944 2.2.26 [Sep-21-2011]
P52948 1817 Nuclear pore complex prot yes no 0.881 0.457 0.268 7e-72
P49793 1816 Nuclear pore complex prot yes no 0.547 0.284 0.266 1e-43
Q54EQ8 2053 Nuclear pore complex prot yes no 0.533 0.245 0.228 3e-31
G5EEH91678 Nuclear pore complex prot no no 0.823 0.463 0.231 6e-31
Q9UTK41778 Nucleoporin nup189 OS=Sch yes no 0.440 0.233 0.218 1e-18
P496871317 Nucleoporin NUP145 OS=Sac yes no 0.121 0.087 0.345 8e-08
Q02629959 Nucleoporin NUP100/NSP100 no no 0.140 0.138 0.279 7e-06
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4 Back     alignment and function desciption
 Score =  273 bits (697), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 274/1021 (26%), Positives = 453/1021 (44%), Gaps = 189/1021 (18%)

Query: 43   VLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIV 102
            +L    YYT P ++DL K  + +      V DFT+GR GYG + F G+ ++  L+LD IV
Sbjct: 735  ILTKVGYYTIPSMDDLAK--ITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIV 792

Query: 103  KFGRHEIVVYEDESSKPEVGQGLNKAAEVTL---FLQGRYLSLKLKEGD--SD-DFVKKM 156
               R E+VVY D++ KP VG+GLN+ AEVTL   +   +     +K  D  +D ++  ++
Sbjct: 793  HIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRL 852

Query: 157  KERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSDDEEDD-----------------IMM 199
            +  + +QGA+F  + P +G W F V HFS++GL D +E++                    
Sbjct: 853  EAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPSKTSTKKLKTAPLPPA 912

Query: 200  DDATPVQNSLEMNG----------------GEVSDVDEE-----------TQMDLSGPE- 231
               TP+Q  + +NG                G V ++D +           T ++ S PE 
Sbjct: 913  SQTTPLQ--MALNGKPAPPPQSQSPEVEQLGRVVELDSDMVDITQEPVLDTMLEESMPED 970

Query: 232  -----LSHSLPAHLGLDPIKMKEMRMVMFQEEEEID-----DFSGTPSRQQWSLGKEYIR 281
                  S  + + LG++P  ++ M+  +  +EE++D      FS  PS+   S  +E   
Sbjct: 971  QEPVSASTHIASSLGINPHVLQIMKASLLTDEEDVDMALDQRFSRLPSKADTS--QEICS 1028

Query: 282  PPLQNTAQRMSQRSS----------------SPLAR----KTP--VGLLEYHPGNSDSDS 319
            P L  +A   S+  S                SP       +TP    L+     +S S  
Sbjct: 1029 PRLPISASHSSKTRSLVGGLLQSKFTSGAFLSPSVSVQECRTPRAASLMNIPSTSSWSVP 1088

Query: 320  PGMILMAQQNKGMPLKKLKSDGFKLDL---KHETPVTGSHSHNIVDAGLFMGRAFRVGWG 376
            P +  +       P   LK+ G +  L     E  VT      ++D  LFMGR+FRVGWG
Sbjct: 1089 PPLTSVFTMPSPAPEVPLKTVGTRRQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWG 1148

Query: 377  PNGILVHSGA------------------------PVGSNSRGVISSVINVEKVAIDKVVR 412
            PN  L +SG                         PV           +++EK+++ +   
Sbjct: 1149 PNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKP 1208

Query: 413  DENDKVRKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYID 472
            DE+ K+        +  PL L  +L H T  V+      +L  ++  +L ++ +   Y D
Sbjct: 1209 DEDMKL--------YQTPLEL--KLKHSTVHVD------ELCPLIVPNLGVA-VIHDYAD 1251

Query: 473  -IIEAQLDVPGVSSSTRLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKD 531
             + EA  D+P        ++ H  + W L + L+      G L+ E D    E  + I+ 
Sbjct: 1252 WVKEASGDLPEAQ-----IVKHWSLTWTLCEALW------GHLK-ELDSQLNEPREYIQI 1299

Query: 532  GPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVE 591
                       L RR  FS WL  +   +++E+VS   +++ ++ +F  LTG+++  +  
Sbjct: 1300 -----------LERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACS 1348

Query: 592  LAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIH 651
            LA   GD RLA LLSQ  GS   R  +  QL  W     D  FI+ +R+R++ LLAG   
Sbjct: 1349 LAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQAD-SFIQDERLRIFALLAGKPV 1407

Query: 652  SSLND-------VTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLL-----DDGKAPLPV 699
              L++         +DWKR L + +WY LPP  S++     Y+         D  A  P+
Sbjct: 1408 WQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPL 1467

Query: 700  PIYVD-EGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHM 758
            P Y++  G +      S     D+ ++L+ L++    +   L  +    S T DPLDY +
Sbjct: 1468 PSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYS---DRHYDLNQLLEPRSITADPLDYRL 1524

Query: 759  IWHQREVLAAVGV--ISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQAT 816
             WH  EVL A+    +S+    +L      QL  +G   WAI+V+LH+    D   ++  
Sbjct: 1525 SWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHI----DNSGIREK 1580

Query: 817  LIREILFQYCESWSSEESQRK---FIEALGVPSEWLHEAMAVYYNYYGELSKALEH--FL 871
             +RE+L ++C+   + ES  K     + L VP++W+HEA AV  +   E  K LE     
Sbjct: 1581 AVRELLTRHCQLLETPESWAKETFLTQKLRVPAKWIHEAKAVRAHM--ESDKHLEALCLF 1638

Query: 872  ECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMES--HKSEIENWDLGAGMYIVFYL 929
            +  +W + H + +  +A    ++ N+  +      +      S I++W+    +Y+ +  
Sbjct: 1639 KAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIR 1698

Query: 930  I 930
            +
Sbjct: 1699 V 1699
Nup98 and Nup96 play a role in the bidirectional transport across the nucleoporin complex (NPC). The repeat domain in Nup98 has a direct role in the transport.
Homo sapiens (taxid: 9606)
>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus GN=Nup98 PE=1 SV=2 Back     alignment and function description
>sp|Q54EQ8|NUP98_DICDI Nuclear pore complex protein Nup98-Nup96 OS=Dictyostelium discoideum GN=nup98 PE=3 SV=1 Back     alignment and function description
>sp|G5EEH9|NUP98_CAEEL Nuclear pore complex protein Nup98-Nup96 OS=Caenorhabditis elegans GN=npp-10 PE=2 SV=1 Back     alignment and function description
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup189 PE=1 SV=1 Back     alignment and function description
>sp|P49687|NU145_YEAST Nucleoporin NUP145 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP145 PE=1 SV=1 Back     alignment and function description
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP100 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query944
2254430881041 PREDICTED: nuclear pore complex protein 0.994 0.902 0.713 0.0
255572773 1067 nucleoporin, putative [Ricinus communis] 0.975 0.863 0.705 0.0
224072689 1067 predicted protein [Populus trichocarpa] 0.978 0.865 0.686 0.0
3565514321022 PREDICTED: nuclear pore complex protein 0.957 0.884 0.641 0.0
297842795 1045 hypothetical protein ARALYDRAFT_895920 [ 0.978 0.884 0.631 0.0
449444831 1073 PREDICTED: nuclear pore complex protein 0.969 0.852 0.645 0.0
30699531 1046 suppressor of auxin resistance 3 [Arabid 0.972 0.877 0.636 0.0
22652297 1046 putative nucleoporin PRECOZ [Arabidopsis 0.972 0.877 0.635 0.0
3122833271042 unnamed protein product [Thellungiella h 0.978 0.886 0.624 0.0
3574954271022 Nuclear pore complex protein Nup98-Nup96 0.975 0.901 0.612 0.0
>gi|225443088|ref|XP_002271967.1| PREDICTED: nuclear pore complex protein Nup98-Nup96 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1378 bits (3567), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/943 (71%), Positives = 781/943 (82%), Gaps = 4/943 (0%)

Query: 1   MGLDARTFASCNNIPQYRKRNISMNAYSLSCEISSENGDSLPVLCSPDYYTEPLLNDLGK 60
           MG DA T  S   + QY++R IS    S  CE+  E   SLP L S  YY EP L +L K
Sbjct: 3   MGCDAGTSGSQIALHQYKRRKISQKNVSSLCEVHGEVEASLPTLRSSGYYMEPCLKELAK 62

Query: 61  REVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPE 120
           RE++D G+ SRV DFTVGR GYG VKFLG+TDVRWLDLDQI++FGRHE+VVY DE +KPE
Sbjct: 63  RELMDSGFCSRVQDFTVGRFGYGRVKFLGDTDVRWLDLDQIIRFGRHEVVVYGDEGAKPE 122

Query: 121 VGQGLNKAAEVTLFLQGRYLSLKLKEGDSDDFVKKMKERTERQGARFVSFDPVSGEWKFL 180
           VGQGLNKAAEVTL LQ R  S   +EG  +D V+K++  T+RQGA F+SF+P +GEWKFL
Sbjct: 123 VGQGLNKAAEVTLVLQIR--SSSFEEGRLNDIVEKLRLCTKRQGADFISFNPSNGEWKFL 180

Query: 181 VVHFSRFGLSDDEEDDIMMDDATPVQNSLEMNGGEVSDVDEETQMDLSGPELSHSLPAHL 240
           V HFSRFGLS+D+E+DI MDD T VQ+ LE N  EVSD+DE T ++ +G  LSHSLPAHL
Sbjct: 181 VHHFSRFGLSEDDEEDIAMDDVTVVQHPLETNAHEVSDIDEATLVEPNGAVLSHSLPAHL 240

Query: 241 GLDPIKMKEMRMVMFQ-EEEEIDDFSGTPSRQQWSLGKEYIRPPLQNTAQRMSQRSSSPL 299
           GLDPIKMKEMRMVMF  +EEE  DFSG   +++ S  KEYIRPPL  +A+RMS +S S +
Sbjct: 241 GLDPIKMKEMRMVMFPVDEEEDHDFSGEFKQREQSFNKEYIRPPLHYSARRMSHKSGSSV 300

Query: 300 ARKTPVGLLEYHPGNSDSDSPGMILMAQQNKGMPLKKLKSDGFKLDLKHETPVTGSHSHN 359
           ARKTP+ LLEY+PG+ DS S G ILMAQQNKGMPLK  K +GFKLDLKHETP+T SHSHN
Sbjct: 301 ARKTPLALLEYNPGSVDSSSSGTILMAQQNKGMPLKTTKVEGFKLDLKHETPITESHSHN 360

Query: 360 IVDAGLFMGRAFRVGWGPNGILVHSGAPVGSN-SRGVISSVINVEKVAIDKVVRDENDKV 418
           IVDA LFMGR+FRVGWGPNGILVH+GA VG N S+ V+SSVIN+EKVAIDKVVRDEN+KV
Sbjct: 361 IVDAALFMGRSFRVGWGPNGILVHAGAAVGGNDSQRVLSSVINLEKVAIDKVVRDENNKV 420

Query: 419 RKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQL 478
           RKELVD  F +PL LHK++ HET+EVE+GS+KL+LQ  VSN LMLSEICRSYI IIE QL
Sbjct: 421 RKELVDSCFISPLKLHKDIKHETKEVEIGSFKLRLQNPVSNRLMLSEICRSYIGIIERQL 480

Query: 479 DVPGVSSSTRLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDL 538
           +VP VSSS R+VLMHQVMVWELIKVLFS RE  GQ +S G DNEE+MM D  +G  + DL
Sbjct: 481 EVPEVSSSARVVLMHQVMVWELIKVLFSAREISGQSKSAGADNEEDMMHDRSEGSSDVDL 540

Query: 539 EALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGD 598
           EALPLIRRAEFS WL+ESVCHRVQ++VSSL+ES+ L+ I LLLTGRQLD++VELAASRGD
Sbjct: 541 EALPLIRRAEFSYWLQESVCHRVQDEVSSLNESSDLEQILLLLTGRQLDAAVELAASRGD 600

Query: 599 VRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVT 658
           VRLACLLSQAGGST++R+D+A QLDLWR NGLDF FIEKDRIRL+ELLAG+IH +L+   
Sbjct: 601 VRLACLLSQAGGSTINRADVAQQLDLWRTNGLDFNFIEKDRIRLFELLAGNIHGALHGKN 660

Query: 659 IDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNE 718
           IDWKRFLGLLMWYQLPP+TSL  VF+ YQ LL DG AP PVP+Y+DEGP++E + WS  E
Sbjct: 661 IDWKRFLGLLMWYQLPPDTSLPFVFRNYQQLLVDGGAPHPVPVYIDEGPVEEAVSWSVGE 720

Query: 719 RNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQ 778
           R DL+YYLMLLHAS  S+FG  KTMF+A SST+DPLDYHMIWHQR VL AVG  SSNDL 
Sbjct: 721 RYDLAYYLMLLHASEGSEFGLGKTMFSAFSSTHDPLDYHMIWHQRAVLEAVGAFSSNDLH 780

Query: 779 ILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKF 838
           +LDMGLVSQLLC G+CHWAIYVVLHMP  DD+PYLQATLIREILFQYCESW S+E QR+F
Sbjct: 781 VLDMGLVSQLLCLGQCHWAIYVVLHMPFRDDFPYLQATLIREILFQYCESWHSQELQRQF 840

Query: 839 IEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHS 898
           +E LG+P  WLHEAMAVY+NY G+LS+ALEH++ CANWQKAHS+F+TSVAH+LFLSA HS
Sbjct: 841 MEDLGIPLAWLHEAMAVYFNYCGDLSRALEHYIACANWQKAHSLFMTSVAHSLFLSAKHS 900

Query: 899 DVWTLATSMESHKSEIENWDLGAGMYIVFYLIRSSLQEENNTM 941
           ++W LATSME HKSEIE+WDLGAG+YI FYLIRSSLQEENNTM
Sbjct: 901 EIWRLATSMEDHKSEIEHWDLGAGVYISFYLIRSSLQEENNTM 943

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572773|ref|XP_002527319.1| nucleoporin, putative [Ricinus communis] gi|223533319|gb|EEF35071.1| nucleoporin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224072689|ref|XP_002303836.1| predicted protein [Populus trichocarpa] gi|222841268|gb|EEE78815.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356551432|ref|XP_003544079.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Glycine max] Back     alignment and taxonomy information
>gi|297842795|ref|XP_002889279.1| hypothetical protein ARALYDRAFT_895920 [Arabidopsis lyrata subsp. lyrata] gi|297335120|gb|EFH65538.1| hypothetical protein ARALYDRAFT_895920 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449444831|ref|XP_004140177.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Cucumis sativus] gi|449481026|ref|XP_004156060.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30699531|ref|NP_178183.2| suppressor of auxin resistance 3 [Arabidopsis thaliana] gi|22652299|gb|AAN03676.1|AF411839_1 putative nucleoporin PRECOZ [Arabidopsis thaliana] gi|61353788|gb|AAX44044.1| putative nucleoporin 96 [Arabidopsis thaliana] gi|332198315|gb|AEE36436.1| suppressor of auxin resistance 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22652297|gb|AAN03675.1|AF411838_1 putative nucleoporin PRECOZ [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312283327|dbj|BAJ34529.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|357495427|ref|XP_003618002.1| Nuclear pore complex protein Nup98-Nup96 [Medicago truncatula] gi|355519337|gb|AET00961.1| Nuclear pore complex protein Nup98-Nup96 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query944
TAIR|locus:20257371046 SAR3 "SUPPRESSOR OF AUXIN RESI 0.972 0.877 0.627 0.0
UNIPROTKB|E1BYU81731 NUP98 "Uncharacterized protein 0.580 0.316 0.280 2e-67
UNIPROTKB|E1BCV4 1816 NUP98 "Uncharacterized protein 0.721 0.375 0.264 1.3e-65
UNIPROTKB|P52948 1817 NUP98 "Nuclear pore complex pr 0.627 0.325 0.277 2.8e-65
UNIPROTKB|E2R4V6 1800 NUP98 "Uncharacterized protein 0.727 0.381 0.264 3.5e-65
ZFIN|ZDB-GENE-040426-11801807 nup98 "nucleoporin 98" [Danio 0.587 0.307 0.266 4.2e-65
UNIPROTKB|F1SUZ2 1702 NUP98 "Uncharacterized protein 0.724 0.401 0.265 1.6e-64
RGD|71033 1816 Nup98 "nucleoporin 98" [Rattus 0.710 0.369 0.267 1e-63
UNIPROTKB|J3KP291638 NUP98 "Nuclear pore complex pr 0.420 0.242 0.283 4.8e-51
DICTYBASE|DDB_G0291390 2053 nup98 "putative nucleoporin 98 0.400 0.184 0.251 1.2e-46
TAIR|locus:2025737 SAR3 "SUPPRESSOR OF AUXIN RESISTANCE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3058 (1081.5 bits), Expect = 0., P = 0.
 Identities = 582/927 (62%), Positives = 729/927 (78%)

Query:    18 RKRNISMNAYSLSCEISSENGDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTV 77
             +KR IS++  +  CE S E  DSLP+L SPDY+ +P +N+L +RE+  P Y SRVPDFT+
Sbjct:    23 KKRRISLDGIAALCEHSKEIIDSLPMLNSPDYFLKPCINELVEREIESPDYCSRVPDFTI 82

Query:    78 GRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPEVGQGLNKAAEVTLFLQG 137
             GR+GYGY++FLGNTDVR LDLD IVKF RHE++VY+DESSKP VG+GLNKAAEVTL +  
Sbjct:    83 GRIGYGYIRFLGNTDVRRLDLDHIVKFHRHEVIVYDDESSKPVVGEGLNKAAEVTLVVN- 141

Query:   138 RYLSLKLKEGDSDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSXXXXXXX 197
                 L   +   +    K+K+ TERQGA F+SFDP +G WKF V HFSRFGLS       
Sbjct:   142 -IPDLTWGKQQVNHIAYKLKQSTERQGATFISFDPDNGLWKFFVPHFSRFGLSDDEAEDI 200

Query:   198 XXXXATPVQNSLEMNGGEVSDVDEETQMDLSGPELSHSLPAHLGLDPIKMKEMRMVMF-- 255
                 A  + + + ++G +V+D+DEE QM+ S  ELSHSLPAHLGLDP KMKEMRM+MF  
Sbjct:   201 AMDDAPGLGDPVGLDGKKVADIDEEDQMETSELELSHSLPAHLGLDPEKMKEMRMLMFPN 260

Query:   256 QEEEEIDDFSGTPSRQQWSLGKEYIRPPLQNTAQRMSQRSSSPLARKTPVGLLEYHPGNS 315
             ++E+E +DF    S    SL K  +RP  Q  AQR S +   P+ RKTP+ LLEY+PGN 
Sbjct:   261 EDEDESEDFREQTSHLMTSLTKRNVRPS-QKIAQRNSHQDPPPVVRKTPLALLEYNPGN- 318

Query:   316 DSDSPGMILMAQQNKGMPLKKLKSDGFKLDLKHETPVTGSHSHNIVDAGLFMGRAFRVGW 375
             D  SPG ILM QQNK + ++K K+ GF+LD+ H TP+T ++S N+VDA LFMGR+FR GW
Sbjct:   319 DKSSPGSILMVQQNKNLAVRKSKTGGFELDISHVTPLTDNYSRNVVDAALFMGRSFRAGW 378

Query:   376 GPNGILVHSGAPV-GSNSRGVISSVINVEKVAIDKVVRDENDKVRKELVDFSFDAPLNLH 434
             GPNG+L H+G P+  S+S+ V+SSVIN EK+AIDKVV D   KV+KEL+D +F+APL+LH
Sbjct:   379 GPNGVLFHTGKPICSSSSQMVLSSVINKEKIAIDKVVWDRKGKVQKELIDSAFEAPLSLH 438

Query:   435 KELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSSTRLVLMHQ 494
             KELNH  EEV  GS+ LKLQ VV++ ++LS+ICRSYI IIE QL+V G+S+S +L LMHQ
Sbjct:   439 KELNHVEEEVRFGSFSLKLQNVVTDRVVLSDICRSYIGIIEKQLEVAGLSTSAKLFLMHQ 498

Query:   495 VMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLK 554
             VMVWELIKVLFSER++  +L     DNEE++MQD+K+   + D EALPLIRRAEFSCWL+
Sbjct:   499 VMVWELIKVLFSERQSTERLMYAASDNEEDVMQDVKEDSAKIDTEALPLIRRAEFSCWLQ 558

Query:   555 ESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVS 614
             ESV HRVQEDVS L+ S+YL+H+F LLTGR+LDS+VELA S+GDVRLACLLSQAGGSTV+
Sbjct:   559 ESVSHRVQEDVSDLNGSSYLEHLFFLLTGRELDSAVELAISKGDVRLACLLSQAGGSTVN 618

Query:   615 RSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLP 674
             R+DI  QL LWR NGLDF FIEK+RI+LYELLAG+IH +L D TIDWKRFLGLLMW+ LP
Sbjct:   619 RNDILQQLHLWRRNGLDFNFIEKERIKLYELLAGNIHDALQDFTIDWKRFLGLLMWHHLP 678

Query:   675 PETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGE 734
             P++SL I+F++YQ LL+  KAP PVPIY+DEGP D  +  S N+ +D+ YYLMLLH+  E
Sbjct:   679 PDSSLPIIFRSYQLLLNQAKAPWPVPIYIDEGPADGFV--SDNKHSDILYYLMLLHSKEE 736

Query:   735 SKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSNDLQILDMGLVSQLLCQGKC 794
              +FG L+TMF+A SST DPLDYHMIWH R +L AVG  +S+DL  LDMG V+QLL QG C
Sbjct:   737 EEFGFLQTMFSAFSSTDDPLDYHMIWHHRGILEAVGAFTSDDLHTLDMGFVAQLLSQGLC 796

Query:   795 HWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMA 854
             HWAIYVVLH+P  +D+PYL  T+IREILFQYCE+WSS ESQR+FI+ LG+PSEW+HEA+A
Sbjct:   797 HWAIYVVLHIPFREDHPYLHVTVIREILFQYCETWSSMESQRQFIKDLGIPSEWMHEALA 856

Query:   855 VYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEI 914
             VYYNY+G+  KAL+ F+ECANWQ+AHSIF+TSVAH+LFLSANHS++W +ATSM+  KSEI
Sbjct:   857 VYYNYHGDFVKALDQFIECANWQRAHSIFMTSVAHSLFLSANHSEIWRIATSMDDRKSEI 916

Query:   915 ENWDLGAGMYIVFYLIRSSLQEENNTM 941
             ENWDLGAG+Y+ FYL++SSLQE+ +TM
Sbjct:   917 ENWDLGAGIYMSFYLLKSSLQEDADTM 943
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA
GO:0009910 "negative regulation of flower development" evidence=NAS
GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IMP
GO:0015288 "porin activity" evidence=ISS
GO:0006406 "mRNA export from nucleus" evidence=IGI;RCA
GO:0009733 "response to auxin stimulus" evidence=IGI
GO:0031965 "nuclear membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005635 "nuclear envelope" evidence=IDA
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006606 "protein import into nucleus" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
UNIPROTKB|E1BYU8 NUP98 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCV4 NUP98 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P52948 NUP98 "Nuclear pore complex protein Nup98-Nup96" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4V6 NUP98 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1180 nup98 "nucleoporin 98" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUZ2 NUP98 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|71033 Nup98 "nucleoporin 98" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J3KP29 NUP98 "Nuclear pore complex protein Nup98-Nup96" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291390 nup98 "putative nucleoporin 98" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query944
pfam12110290 pfam12110, Nup96, Nuclear protein 96 4e-75
pfam04096137 pfam04096, Nucleoporin2, Nucleoporin autopeptidase 1e-43
>gnl|CDD|221425 pfam12110, Nup96, Nuclear protein 96 Back     alignment and domain information 
 Score =  248 bits (634), Expect = 4e-75
 Identities = 97/301 (32%), Positives = 150/301 (49%), Gaps = 22/301 (7%)

Query: 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLD 631
           + L+ IFLLL+G ++  + ELA    +  LA LLSQ G     RS    QL  WR NG+ 
Sbjct: 1   SPLEKIFLLLSGNRIVEACELAIESNNFHLATLLSQIGNDPSVRSLAQQQLSKWRQNGVL 60

Query: 632 FKFIEKDRIRLYELLAGHIHSSLNDVT-----IDWKRFLGLLMWYQLPPETSLAIVFQTY 686
              I++   ++YELLAG++  SL D       +DW + LGL +WY +  + S+    Q++
Sbjct: 61  -SEIDEPIRKIYELLAGNVFRSLGDSGENEFELDWLQALGLRLWYGISDDLSIEDAVQSF 119

Query: 687 QHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNA 746
              L  G+ P P P              SG    D  + L+ L+A+  +   +L      
Sbjct: 120 LDALSSGEEPAPPPPP---TEGVADDVNSGEPFEDPLFDLLKLYANRSANLEAL---LLP 173

Query: 747 LSSTYDPLDYHMIWHQREVLAAVGVISSNDLQI----LDMGLVSQLLCQGKCHWAIYVVL 802
            SS+ DPLDY + W   +VL+AVG    ++       L +   +QL   G   WA++V+L
Sbjct: 174 ESSSGDPLDYRLSWLLCQVLSAVGYRHDSEDIATADQLTLSFAAQLESNGLWKWALFVLL 233

Query: 803 HMPRCDDYPYLQATLIREILFQYCESWSSEESQRKF--IEALGVPSEWLHEAMAVYYNYY 860
           H+    D        IRE+L +  +  SS+++ ++   +E LG+P  W+HEA A+Y  Y 
Sbjct: 234 HLSDDSDR----EKAIRELLARNIQELSSDDNPKEQFLLEKLGIPESWIHEAKALYARYE 289

Query: 861 G 861
           G
Sbjct: 290 G 290

Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex. Length = 290
>gnl|CDD|202886 pfam04096, Nucleoporin2, Nucleoporin autopeptidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 944
PF12110290 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup 100.0
PF04096141 Nucleoporin2: Nucleoporin autopeptidase; InterPro: 100.0
PF07575566 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 98.09
PF12931284 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_ 93.65
PF04121 697 Nup84_Nup100: Nuclear pore protein 84 / 107 ; Inte 92.34
KOG0845903 consensus Nuclear pore complex, Nup98 component (s 92.21
KOG1964 800 consensus Nuclear pore complex, rNup107 component 84.71
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex Back     alignment and domain information 
Probab=100.00  E-value=2.3e-68  Score=585.75  Aligned_cols=280  Identities=39%  Similarity=0.679  Sum_probs=213.5

Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCCchhHHHHHHHHHHHHHcCCCcccChHHHHHHHHHhhCCcc
Q 002269          572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIH  651 (944)
Q Consensus       572 ~~le~if~lL~g~~I~eAc~~Ai~sgd~rLAtLlsq~gs~~~~r~~l~~QL~~W~~~~~d~~~I~~~r~kIY~LLAG~~~  651 (944)
                      +|+|+||.+||||||++||++|+++||+|||+||||+|+++.+|.++++||+.|+++|++ ++|++.++|||+||||+++
T Consensus         1 ~~le~if~~L~~~~i~~A~~~A~~~~n~~LA~Llsq~~~~~~~r~~~~~QL~~W~~~~~~-~~I~~~~~~iY~LLAG~~~   79 (290)
T PF12110_consen    1 SPLEKIFLLLSGHDIEEACELAIDSGNPHLATLLSQIGGDPAVRSLAKQQLEDWRESGAD-SFIDEPRRKIYELLAGNVF   79 (290)
T ss_dssp             -HHHHHHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHTTSSSS---SS-HHHHHHHHHHHS-SS
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHCCCchHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCC-eecCHHHHHHHHHhcCCCc
Confidence            479999999999999999999999999999999999998999999999999999999998 6999999999999999998


Q ss_pred             cccCC------CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCChhHH
Q 002269          652 SSLND------VTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYY  725 (944)
Q Consensus       652 ~~~~~------~~LdW~ralgL~LWYg~~~~~si~~av~~y~~~~~~~~~~~P~P~y~~~~~~~~~~~~~~~~~~D~~y~  725 (944)
                      .....      ++|||+|+||||||||++++.+|+++|+.|++++.++++++|.|+|+++...  .......+.+|++|+
T Consensus        80 ~~~~~~~~~~~~~LdW~~~lgl~lwY~~~~~~sl~~~v~~y~~~~~~~~~~~P~P~y~~~~~~--~~~~~~~~~~D~~~~  157 (290)
T PF12110_consen   80 WSSGNKGINICEGLDWKRALGLHLWYGDPPDASLEDAVQSYEEAFSKGEAAPPLPPYAERNSS--WDDSNSEPREDLLYH  157 (290)
T ss_dssp             SSTT-SGGG-GGTS-HHHHHHHHHHTTTTSSS-HHHHHHHHHHHS----------------------------TT-HHHH
T ss_pred             ccccccccccCCCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhccchhhhhhhcccc--cccccCCCCcCHHHH
Confidence            76542      4699999999999999999999999999999999999999999999987651  111235578999999


Q ss_pred             HHHhcccCCCcccchhhhhcccCCCCCCCCcchhHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhCCCchhHHHHHhc
Q 002269          726 LMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISS--NDLQILDMGLVSQLLCQGKCHWAIYVVLH  803 (944)
Q Consensus       726 LLkL~~~~~~~~~~l~~~l~p~~~s~~~lD~rLsW~l~~vL~a~g~~~~--~~~~~Lt~~fA~QLe~~glw~wAifVllh  803 (944)
                      |||||+++..   +++++|.|.+++++++||||+|||+++|+++|+.+.  ...++||++||+|||+.|+|+|||||+||
T Consensus       158 LLkly~~~~~---~l~~~L~p~~~s~~~lD~~l~W~l~~~L~~~~~~~~~~~~~d~lt~~fa~QLe~~glw~~AlfVllh  234 (290)
T PF12110_consen  158 LLKLYADRSH---SLEQVLNPLSSSPSPLDYRLSWHLYQVLRALGYRHDSEDRADQLTLSFASQLESLGLWEWALFVLLH  234 (290)
T ss_dssp             HHHHH-HSGT---THHHHHHHHHTT-SSS-HHHHHHHHHHHHTTSSS---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred             HHHhhcCCCC---CHHHHhChhccCCCccCChhHhHHHHHHHHcCCCccCccHHHHHHHHHHHHHHhCCccHHHHHHHhc
Confidence            9999988764   799999999999999999999999999999998654  35699999999999999999999999999


Q ss_pred             ccCCCCChHHHHHHHHHHHHhhcccCCChh-HHHHHH-HHhCCCHHHHHHHHHHHHHhcC
Q 002269          804 MPRCDDYPYLQATLIREILFQYCESWSSEE-SQRKFI-EALGVPSEWLHEAMAVYYNYYG  861 (944)
Q Consensus       804 l~d~~~~~~~R~~avr~lL~r~~~~~~~~~-~~~~fL-~~L~IP~~WI~eAkAl~a~~~~  861 (944)
                      |+|+.    .|+.+||++|.||+..+.+++ ..+.|| ++|+||++|||||||+++||+|
T Consensus       235 l~d~~----~r~~~ir~ll~r~~~~~~~~~~~~~~~l~~~L~IP~~wI~eA~Al~a~y~g  290 (290)
T PF12110_consen  235 LSDDS----SREQAIRELLARHIPELSSDDDEKEKFLLEKLKIPESWIHEAKALYARYEG  290 (290)
T ss_dssp             -S-HH----HHHHHHHHHHHHCTGGGST---TTTSHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred             CCCHH----HHHHHHHHHHHHhcccccccchhhHHHHHHHcCcCHHHHHHHHHHHHHccC
Confidence            98754    499999999999998876542 234565 4999999999999999999986

Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex [], [].; PDB: 3BG1_C 3BG0_F 3IKO_B.
>PF04096 Nucleoporin2: Nucleoporin autopeptidase; InterPro: IPR007230 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human Back     alignment and domain information
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C Back     alignment and domain information
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog Back     alignment and domain information
>KOG0845 consensus Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query944
2q5x_A155 Crystal Structure Of The C-Terminal Domain Of Hnup9 1e-20
1ko6_A187 Crystal Structure Of C-Terminal Autoproteolytic Dom 3e-19
2q5y_A152 Crystal Structure Of The C-Terminal Domain Of Hnup9 6e-19
3tkn_C152 Structure Of The Nup82-Nup159-Nup98 Heterotrimer Le 7e-19
3kep_A174 Crystal Structure Of The Autoproteolytic Domain Fro 2e-06
3pbp_B148 Structure Of The Yeast Heterotrimeric Nup82-Nup159- 2e-06
2aiv_A149 Multiple Conformations In The Ligand-Binding Site O 2e-06
3nf5_A164 Crystal Structure Of The C-Terminal Domain Of Nucle 5e-05
>pdb|2Q5X|A Chain A, Crystal Structure Of The C-Terminal Domain Of Hnup98 Length = 155 Back     alignment and structure 
Iteration: 1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 8/153 (5%)
Query: 43  VLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIV 102
           +L    YYT P ++DL K  + +      V DFT+GR GYG + F G+ ++  L+LD IV
Sbjct: 3   ILTKVGYYTIPSMDDLAK--ITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIV 60
Query: 103 KFGRHEIVVYEDESSKPEVGQGLNKAAEVTL---FLQGRYLSLKLKEGD---SDDFVKKM 156
              R E+VVY D++ KP VG+GLN+ AEVTL   +   +     +K  D     ++  ++
Sbjct: 61  HIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRL 120
Query: 157 KERTERQGARFVSFDPVSGEWKFLVVHFSRFGL 189
           +  + +QGA+F  + P +G W F V HF+++GL
Sbjct: 121 EAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGL 153
>pdb|1KO6|A Chain A, Crystal Structure Of C-Terminal Autoproteolytic Domain Of Nucleoporin Nup98 Length = 187 Back     alignment and structure
>pdb|2Q5Y|A Chain A, Crystal Structure Of The C-Terminal Domain Of Hnup98 Length = 152 Back     alignment and structure
>pdb|3TKN|C Chain C, Structure Of The Nup82-Nup159-Nup98 Heterotrimer Length = 152 Back     alignment and structure
>pdb|3KEP|A Chain A, Crystal Structure Of The Autoproteolytic Domain From The Nuclear Pore Complex Component Nup145 From Saccharomyces Cerevisiae Length = 174 Back     alignment and structure
>pdb|3PBP|B Chain B, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116 Nucleoporin Complex Length = 148 Back     alignment and structure
>pdb|2AIV|A Chain A, Multiple Conformations In The Ligand-Binding Site Of The Yeast Nuclear Pore Targeting Domain Of Nup116p Length = 149 Back     alignment and structure
>pdb|3NF5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Nuclear Pore Complex Component Nup116 From Candida Glabrata Length = 164 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query944
3bg1_B442 Nucleoporin NUP145; NPC, transport, WD repeat, aut 8e-83
2q5x_A155 Nuclear pore complex protein NUP98; nucleoporin, a 1e-49
3pbp_B148 Nucleoporin NUP116/NSP116; beta-propeller, mRNA ex 8e-45
1ko6_A187 Nuclear pore complex protein NUP98; nucleoporin, a 2e-44
3kep_A174 Nucleoporin NUP145; nuclear pore complex, NUP145-N 3e-43
3nf5_A164 Nucleoporin NUP116; nuclear pore complex, glebs do 3e-39
3jro_A753 Fusion protein of protein transport protein SEC13 4e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B Length = 442 Back     alignment and structure
 Score =  273 bits (699), Expect = 8e-83
 Identities = 75/502 (14%), Positives = 157/502 (31%), Gaps = 79/502 (15%)

Query: 368 GRAFRVGWGPNGILVHSGAPVGSNSRGVISSVINVEKVAIDKVVRDENDKVRKELVDFSF 427
             +       N  + ++   +        ++     K +   ++  ++            
Sbjct: 9   HHSGDPFSECNDEIDNAKLIMKERR---FTASYTFAKFSTGSMLLTKDI----------- 54

Query: 428 DAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSST 487
                +  +      + +     + L K +    + +     Y  I E+ L         
Sbjct: 55  VGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKSNPYPQISESSLLFKDALDYM 114

Query: 488 RLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRA 547
                    +W+L  +LF              DN++  M  +K              R  
Sbjct: 115 EKT-SSDYNLWKLSSILFDPVSYP-----YKTDNDQVKMALLK------------KERHC 156

Query: 548 EFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQ 607
             + W+   +   ++E + +   SN ++ IFL L    +  + +LA    +  L+ L+S 
Sbjct: 157 RLTSWIVSQIGPEIEEKIRN--SSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISY 214

Query: 608 AGGSTVS-RSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVT-----IDW 661
            G +    R     QL  W   G     I+K+  ++Y+LL+G     L  +        W
Sbjct: 215 LGSNDPRIRDLAELQLQKWSTGG---CSIDKNISKIYKLLSGSPFEGLFSLKELESEFSW 271

Query: 662 KRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERND 721
              L L + Y    E SL  + Q++                          D      +D
Sbjct: 272 LCLLNLTLCYGQIDEYSLESLVQSHL-------------------------DKFSLPYDD 306

Query: 722 LSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGV--ISSNDLQI 779
               +  L+A+ E    + + ++  +    + LD    W+  + L   G    S      
Sbjct: 307 PIGVIFQLYAANE----NTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDE 362

Query: 780 LDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFI 839
                 +QL        +++V   +   DD        I+ ++ +   +     +    +
Sbjct: 363 ATFAFAAQLEFAQLHGHSLFVSCFLN--DDKAAEDT--IKRLVMREI-TLLRASTNDHIL 417

Query: 840 EALGVPSEWLHEAMAVYYNYYG 861
             L +PS+ +  A A+   Y G
Sbjct: 418 NRLKIPSQLIFNAQALKDRYEG 439
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C Length = 155 Back     alignment and structure
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A Length = 148 Back     alignment and structure
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1 Length = 187 Back     alignment and structure
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysis, protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A* Length = 174 Back     alignment and structure
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata} Length = 164 Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query944
3bg1_B442 Nucleoporin NUP145; NPC, transport, WD repeat, aut 100.0
3jro_A753 Fusion protein of protein transport protein SEC13 100.0
2q5x_A155 Nuclear pore complex protein NUP98; nucleoporin, a 100.0
1ko6_A187 Nuclear pore complex protein NUP98; nucleoporin, a 100.0
3nf5_A164 Nucleoporin NUP116; nuclear pore complex, glebs do 100.0
3pbp_B148 Nucleoporin NUP116/NSP116; beta-propeller, mRNA ex 100.0
3kep_A174 Nucleoporin NUP145; nuclear pore complex, NUP145-N 100.0
3f3f_C570 Nucleoporin NUP85; structural protein, protein com 96.51
3mzk_B441 Protein transport protein SEC16; alpha-helical-sta 93.58
2pm7_A399 Protein WEB1, protein transport protein SEC31; bet 93.1
1ko6_B64 Nuclear pore complex protein NUP98; nucleoporin, a 90.01
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B Back     alignment and structure
Probab=100.00  E-value=2.3e-74  Score=660.24  Aligned_cols=316  Identities=20%  Similarity=0.323  Sum_probs=275.1

Q ss_pred             hhHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhhhhccCCCCccccccchhHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 002269          492 MHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDES  571 (944)
Q Consensus       492 ~~e~~VW~L~saLfd~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~RR~~Ls~WL~~~v~~~v~~ei~~~~~~  571 (944)
                      .++.+||+||+||||+.+.+.     +.+.+.            ++.++..+.||++|++||++.+++.+++++.  .++
T Consensus       118 ~~e~~vW~L~saLf~~~~~~~-----~~~~~~------------~~~~~~~~~Rr~~l~~WL~~~~~~~v~~~~~--~~~  178 (442)
T 3bg1_B          118 SSDYNLWKLSSILFDPVSYPY-----KTDNDQ------------VKMALLKKERHCRLTSWIVSQIGPEIEEKIR--NSS  178 (442)
T ss_dssp             SHHHHHHHHHHHHTSCCCCSS-----CCSCHH------------HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--TCS
T ss_pred             hHHhHHHHHHHHhcCCCcCcc-----cccchh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC
Confidence            588999999999999865321     111110            1124556889999999999999998888773  356


Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCCchhHHHH-HHHHHHHHHcCCCcccChHHHHHHHHHhhCCc
Q 002269          572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDI-AHQLDLWRVNGLDFKFIEKDRIRLYELLAGHI  650 (944)
Q Consensus       572 ~~le~if~lL~g~~I~eAc~~Ai~sgd~rLAtLlsq~gs~~~~r~~l-~~QL~~W~~~~~d~~~I~~~r~kIY~LLAG~~  650 (944)
                      +++|+||.+||||+|++||++|+++||+|||+||||+||++.+|++| ++||+.|++.  + .+|+++|+|||+||||++
T Consensus       179 ~~~e~i~~~L~~~~v~eA~~~Ai~~~d~rLA~Llsq~g~~~~~r~~la~~QL~~W~~~--~-~~I~~~~~kiY~LLAG~~  255 (442)
T 3bg1_B          179 NEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTG--G-CSIDKNISKIYKLLSGSP  255 (442)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHTSCCHHHHHHHHHHHHHTTSS--C-CCSCHHHHHHHHHHHSCS
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHCCCcHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--C-ccCCHHHHHHHHHhcCCc
Confidence            88999999999999999999999999999999999999999999999 9999999988  4 699999999999999998


Q ss_pred             cccc----C-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCChhHH
Q 002269          651 HSSL----N-DVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYY  725 (944)
Q Consensus       651 ~~~~----~-~~~LdW~ralgL~LWYg~~~~~si~~av~~y~~~~~~~~~~~P~P~y~~~~~~~~~~~~~~~~~~D~~y~  725 (944)
                      +...    . ..+|||+|+||||||||+++++||++||..|++++.     +|                    .+|++|+
T Consensus       256 ~e~~~~~~~i~~~LdW~ralgl~LWY~~~~~~si~~av~~f~~~~~-----~P--------------------~~D~~~~  310 (442)
T 3bg1_B          256 FEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS-----LP--------------------YDDPIGV  310 (442)
T ss_dssp             TTSTTCSGGGGGTSCHHHHHHHHHHTCCCSSCCHHHHHHHHHHHSC-----CC--------------------TTCHHHH
T ss_pred             ccccccchhcccCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcc-----CC--------------------CCCHHHH
Confidence            5331    1 258999999999999999999999999999998776     22                    3699999


Q ss_pred             HHHhcccCCCcccchhhhhcccCCCCCCCCcchhHHHHHHHHhcCCCC--CchhhHHHHHHHHHHHhCCCchhHHHHHhc
Q 002269          726 LMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVIS--SNDLQILDMGLVSQLLCQGKCHWAIYVVLH  803 (944)
Q Consensus       726 LLkL~~~~~~~~~~l~~~l~p~~~s~~~lD~rLsW~l~~vL~a~g~~~--~~~~~~Lt~~fA~QLe~~glw~wAifVllh  803 (944)
                      ||||||++    .+++++|+|.+++++||||||+|||+++|+++|+..  ....++||++||+|||+.|+|+|||||+||
T Consensus       311 LLkLya~~----~~le~~L~p~s~s~~~lD~rLsW~L~~~L~a~g~~~~~~~~~d~L~~~fA~QLe~~Glw~wAifVllH  386 (442)
T 3bg1_B          311 IFQLYAAN----ENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF  386 (442)
T ss_dssp             HHHHHHSC----TTHHHHHHHHHTTCCCSCHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHccC----CCHHHHhChhccCCCcccchhHHHHHHHHHhCCCcccChhHHHHHHHHHHHHHHHCCCcHHHHHHHhh
Confidence            99999988    269999999999999999999999999999999844  446799999999999999999999999999


Q ss_pred             ccCCCCChHHHHHHHHHHHHhhcccCCChhHHHHHHH-HhCCCHHHHHHHHHHHHHhcCCHH
Q 002269          804 MPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIE-ALGVPSEWLHEAMAVYYNYYGELS  864 (944)
Q Consensus       804 l~d~~~~~~~R~~avr~lL~r~~~~~~~~~~~~~fL~-~L~IP~~WI~eAkAl~a~~~~d~~  864 (944)
                      |+|+.    .|+++||++|.|||..+.+ + .+.||. +|+||++|||||||++|+|+||++
T Consensus       387 l~d~~----~Re~avr~lL~R~~~~~~~-~-~~~fL~~~L~IP~~WI~eAkAl~a~~~gd~~  442 (442)
T 3bg1_B          387 LNDDK----AAEDTIKRLVMREITLLRA-S-TNDHILNRLKIPSQLIFNAQALKDRYEGNYL  442 (442)
T ss_dssp             CCCHH----HHHHHHHHHHHHSTGGGST-T-TTSCHHHHTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCChH----HHHHHHHHHHHhhcccccc-H-HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC
Confidence            98754    5999999999999987753 2 366775 999999999999999999999974
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C Back     alignment and structure
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1 Back     alignment and structure
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata} Back     alignment and structure
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A Back     alignment and structure
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A* Back     alignment and structure
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B Back     alignment and structure
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B Back     alignment and structure
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 944
g1ko6.1158 b.119.1.1 (A:,B:) C-terminal autoproteolytic domai 5e-47

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query944
g1ko6.1158 C-terminal autoproteolytic domain of nucleoporin n 100.0