Citrus Sinensis ID: 002272
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 944 | 2.2.26 [Sep-21-2011] | |||||||
| Q51UJ9 | 1395 | Autophagy-related protein | N/A | no | 0.469 | 0.317 | 0.209 | 1e-10 |
| >sp|Q51UJ9|ATG11_MAGO7 Autophagy-related protein 11 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG11 PE=3 SV=3 | Back alignment and function desciption |
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Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 112/535 (20%), Positives = 212/535 (39%), Gaps = 92/535 (17%)
Query: 17 VHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPS 76
V I+ +G ++D + + ++ + + I N C+ + P K L +
Sbjct: 5 VLIAHSGQRLQIDTSRLTTLDEFRSAVSRSTSIPQN-----CIIALVPPGKALRPQAIQM 59
Query: 77 DDKEVFIFNKLRLQSNSPPPSPEQVDVLEVADPPPPALSQDPHPLDDAPDPALKALPSYE 136
+ KE+F+++ R+ P SP V LE+ P P A++ P+ + D ++L S++
Sbjct: 60 E-KEIFVYDS-RMTQTGAPGSPFPVK-LEIDLPKPYAITNPPNDIIDT-----RSLESWQ 111
Query: 137 RQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERA-------VEVGRGNLEQYYRVIN 189
FR H + E CE + +E Q A ++ NLE R
Sbjct: 112 DLFRERRVWAHRLS-------EDCEGMEKEAHDQYEAMDNMLSCLDAAVANLESVVRATE 164
Query: 190 QNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSV------------------KLHPSLQT 231
Y D K + +Q ++DL+ + +++ RS+ K PS Q
Sbjct: 165 NKYEDLKKWAATEQTGYNDLVTRWEQNLGLARSIPISAAMVRLMTGKDVTGAKGRPSKQ- 223
Query: 232 ATCKCLLDFVKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIK 291
AT + L+D + RK + R+F +++ + + E L ++
Sbjct: 224 ATLEDLVDL---DCARKEGRRAPTVLRKFNARIADLE--------KAEGRL-------MQ 265
Query: 292 NLEMMIKEHQRFINEQKSIM------QSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSA 345
N E + E +R I+ +S+M L +D+ + V++ + S D + A
Sbjct: 266 NFEELEAEFRRVIS--RSVMGHSQDATQLLQDIQALAGKVENDYRTTMDYSTSTRDLLQA 323
Query: 346 LGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKL 405
+ H + HLP + + +L + +N + + +M+ I VS + +
Sbjct: 324 -SKIAQTHTEKHLPSLHKRALEMDGMLRYAIKARNALALEQAEFMRSIADVSKL----DM 378
Query: 406 QFPVFREAMVRQDDI--FADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLA 463
Q A+ +++ F L+L+ + Y A AE +RRK + LA +A
Sbjct: 379 QVKSLINAIAEDEELATFDYLRLIHQVPYMYAAFTAEAIRRKEWFDKVKTDSTTLANEMA 438
Query: 464 TKREVEVRRREEFLK--ANSVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDID 516
++ E +RR ++ K ++ Y P + D N+ + NLL D
Sbjct: 439 LFQDEEAKRRRKWYKTIGDTSYGPESL-----------STDNNVPGLEVNLLGED 482
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Involved in cytoplasm to vacuole transport (Cvt) and pexophagy. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 944 | ||||||
| 255574990 | 1145 | conserved hypothetical protein [Ricinus | 0.984 | 0.811 | 0.756 | 0.0 | |
| 224143908 | 1153 | predicted protein [Populus trichocarpa] | 0.992 | 0.812 | 0.740 | 0.0 | |
| 147866071 | 950 | hypothetical protein VITISV_042065 [Viti | 0.991 | 0.985 | 0.734 | 0.0 | |
| 225445782 | 1158 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.807 | 0.733 | 0.0 | |
| 356498781 | 1154 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.816 | 0.718 | 0.0 | |
| 357479969 | 1154 | hypothetical protein MTR_4g130370 [Medic | 0.997 | 0.816 | 0.707 | 0.0 | |
| 449453950 | 1152 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.815 | 0.685 | 0.0 | |
| 224088338 | 1157 | predicted protein [Populus trichocarpa] | 0.991 | 0.808 | 0.705 | 0.0 | |
| 15234869 | 1148 | uncharacterized protein [Arabidopsis tha | 0.983 | 0.808 | 0.662 | 0.0 | |
| 297743689 | 1068 | unnamed protein product [Vitis vinifera] | 0.734 | 0.648 | 0.700 | 0.0 |
| >gi|255574990|ref|XP_002528401.1| conserved hypothetical protein [Ricinus communis] gi|223532189|gb|EEF33994.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1441 bits (3730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/951 (75%), Positives = 818/951 (86%), Gaps = 22/951 (2%)
Query: 1 MSCSITEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD 60
M+ SITE VHEGKLLV+++ENGHSFELDC+E + VEAVMR+IES + INFN+QLVLCLD
Sbjct: 1 MNSSITEGSVHEGKLLVYVAENGHSFELDCDETTLVEAVMRYIESVSEINFNEQLVLCLD 60
Query: 61 MKLEPQKLLSAYRLPSDDKEVFIFNKLRLQSNSPPPSPEQVDVLEVADPPPPALSQDPHP 120
MKLEPQ+ LSAY+LPS D+EVFIFN+ RLQ+NSP P+PEQ+D+LEVADPP P + DPHP
Sbjct: 61 MKLEPQRPLSAYKLPSSDREVFIFNRTRLQNNSPSPAPEQIDILEVADPPSPGCTHDPHP 120
Query: 121 LDDAPDPALKALPSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVEVGRGN 180
LDDA DPALKALPSYERQFRYHYHRGHAIY RT AK CER LREQKVQ RA++V RGN
Sbjct: 121 LDDALDPALKALPSYERQFRYHYHRGHAIYGRTHAKYAHCERFLREQKVQGRAIDVARGN 180
Query: 181 LEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDF 240
L+QYYR+I+QNY++FMKRY+QQ R+HS+LL N+ RD+EKLRS+KLHP+LQ T CL+DF
Sbjct: 181 LDQYYRMISQNYSEFMKRYTQQHRMHSELLVNYRRDLEKLRSIKLHPALQATTRTCLVDF 240
Query: 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEH 300
VKEE+LRK+ E CS+SHRQFE KVS+FKQ+F +VKR+VE+L RAS P+KNLE+ IKEH
Sbjct: 241 VKEENLRKAVENCSNSHRQFEKKVSEFKQMFGEVKRKVEDLFACRASFPLKNLELTIKEH 300
Query: 301 QRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPR 360
Q+FINEQKSIMQSLSKDV+TVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDK+HLP+
Sbjct: 301 QKFINEQKSIMQSLSKDVNTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKNHLPK 360
Query: 361 MQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDDI 420
M+AC RSI+KLL+FC+DKKNEMN+FVHNYMQKITYVSY+IKDAKLQFPVFREAMVRQDD+
Sbjct: 361 MEACGRSITKLLEFCKDKKNEMNIFVHNYMQKITYVSYIIKDAKLQFPVFREAMVRQDDL 420
Query: 421 FADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAN 480
F DLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKA+
Sbjct: 421 FTDLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAH 480
Query: 481 SVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVYAPEYLAGL-RKGEKPVN 539
S YIPRD+L +MGLYDTP+QCDVNIAP DTNLLDID+SDL+ YAPE+LAGL K EK +
Sbjct: 481 SSYIPRDVLAAMGLYDTPSQCDVNIAPFDTNLLDIDMSDLDRYAPEHLAGLPLKSEKLAS 540
Query: 540 VR-------DGSHSVEAEEIALDALDREDPEELHEGCELVEIAGTSKMEVENAKLKAELA 592
+R + SHS EAEEI+ D D++D EL EGCELVEIAGTSKMEVENAKLKAELA
Sbjct: 541 LRSSFSMSTESSHSAEAEEISADTHDKDD-HELLEGCELVEIAGTSKMEVENAKLKAELA 599
Query: 593 SAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCV 652
SA ALICSL E+EYESLDDSK+D +LKNAAE+TAEAL LKDEYGKH+Q+MLKAKQMQC+
Sbjct: 600 SAQALICSLGLELEYESLDDSKVDSLLKNAAERTAEALQLKDEYGKHLQSMLKAKQMQCL 659
Query: 653 SYEKRIQELEQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGGGETHMPCISTS 712
SYEKRIQELEQRLSDQYL QK S VSDF + KAD KPE +GGG TS
Sbjct: 660 SYEKRIQELEQRLSDQYLQGQKLSISNLVSDFDIPAAKADGSKPEVTGGG--------TS 711
Query: 713 EPMDEVSCVSNSFDAKLALLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELPI 772
EPMDEVSC+SNS D+KL LL RQPSKGREGVDENM+DSSGMLN LDS M EP REEL +
Sbjct: 712 EPMDEVSCISNSLDSKLGLLTRQPSKGREGVDENMMDSSGMLNTQLDSLMTEPQREELQV 771
Query: 773 NEKDGKYKMPGQLGMSMTNSSTAESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALA 832
++KDGK K+ QLGMS+ NSSTAESMPE N+LP DAT ++ +S++VL+LQ AL
Sbjct: 772 SDKDGKDKLVAQLGMSLANSSTAESMPEAQNVLPSDATVEAK-----TSDVVLELQRALD 826
Query: 833 DKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLC 892
+KSDQL E + KLKA ME+V +L RELEM +KLLDESQMNCAHLENCLHEAREEAQTHLC
Sbjct: 827 EKSDQLGEIENKLKAAMEDVTVLTRELEMSRKLLDESQMNCAHLENCLHEAREEAQTHLC 886
Query: 893 AADRRASEYSALRASAVKLRGLFERLRSCVFASEGAGGFADSLRTLAQSLA 943
AADRRASEY+ALRASAVK+R LFERL+SCV A G GFADSLR LAQSL
Sbjct: 887 AADRRASEYNALRASAVKMRSLFERLKSCVCAPVGVAGFADSLRALAQSLG 937
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143908|ref|XP_002325118.1| predicted protein [Populus trichocarpa] gi|222866552|gb|EEF03683.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|147866071|emb|CAN78826.1| hypothetical protein VITISV_042065 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225445782|ref|XP_002273616.1| PREDICTED: uncharacterized protein LOC100267388 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356498781|ref|XP_003518227.1| PREDICTED: uncharacterized protein LOC100794018 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357479969|ref|XP_003610270.1| hypothetical protein MTR_4g130370 [Medicago truncatula] gi|355511325|gb|AES92467.1| hypothetical protein MTR_4g130370 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449453950|ref|XP_004144719.1| PREDICTED: uncharacterized protein LOC101216810 [Cucumis sativus] gi|449518296|ref|XP_004166178.1| PREDICTED: uncharacterized LOC101216810 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224088338|ref|XP_002308415.1| predicted protein [Populus trichocarpa] gi|222854391|gb|EEE91938.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|15234869|ref|NP_194808.1| uncharacterized protein [Arabidopsis thaliana] gi|5725443|emb|CAB52452.1| putative protein [Arabidopsis thaliana] gi|7269980|emb|CAB79797.1| putative protein [Arabidopsis thaliana] gi|332660409|gb|AEE85809.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297743689|emb|CBI36572.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 944 | ||||||
| TAIR|locus:2131944 | 1148 | AT4G30790 [Arabidopsis thalian | 0.983 | 0.808 | 0.627 | 1.4e-307 | |
| WB|WBGene00006754 | 882 | unc-15 [Caenorhabditis elegans | 0.239 | 0.256 | 0.161 | 4.2e-06 | |
| ZFIN|ZDB-GENE-020604-1 | 1935 | myhz2 "myosin, heavy polypepti | 0.283 | 0.138 | 0.224 | 4.8e-06 | |
| ZFIN|ZDB-GENE-000322-5 | 1938 | myhz1.1 "myosin, heavy polypep | 0.270 | 0.131 | 0.228 | 4.9e-06 | |
| ZFIN|ZDB-GENE-070705-73 | 1937 | myhz1.2 "myosin, heavy polypep | 0.270 | 0.131 | 0.228 | 6.1e-06 | |
| ZFIN|ZDB-GENE-070705-74 | 1937 | myhz1.3 "myosin, heavy polypep | 0.270 | 0.131 | 0.228 | 6.1e-06 | |
| MGI|MGI:2445022 | 917 | A630007B06Rik "RIKEN cDNA A630 | 0.316 | 0.326 | 0.250 | 8.5e-06 | |
| TAIR|locus:2045412 | 1333 | AT2G32240 "AT2G32240" [Arabido | 0.334 | 0.237 | 0.252 | 8.8e-06 | |
| ZFIN|ZDB-GENE-081124-1 | 1939 | myhb "myosin, heavy chain b" [ | 0.274 | 0.133 | 0.202 | 1.2e-05 | |
| ZFIN|ZDB-GENE-030131-5336 | 1936 | wu:fd14a01 "wu:fd14a01" [Danio | 0.271 | 0.132 | 0.215 | 1.3e-05 |
| TAIR|locus:2131944 AT4G30790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2951 (1043.9 bits), Expect = 1.4e-307, P = 1.4e-307
Identities = 595/948 (62%), Positives = 720/948 (75%)
Query: 1 MSCSITEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD 60
MS S TE +GKLL+ ++ENGHSFE C+E + VE+VMRF+ES +GI +DQL+L LD
Sbjct: 1 MSGSFTESFADDGKLLLCVAENGHSFEFQCSETTSVESVMRFVESVSGIALSDQLLLSLD 60
Query: 61 MKLEPQKLLSAYRLPSDDKEVFIFNKLRLQSNSPPPSPEQVDVLEVADPPPPALSQXXXX 120
MKLEPQKLLSA+ LP+ D+EVF+FNK LQSNS PPSPE VD+ +VAD PPA
Sbjct: 61 MKLEPQKLLSAFGLPASDREVFVFNKAMLQSNSHPPSPEDVDLQDVADALPPASLHEHHP 120
Query: 121 XXXXXXXXXXXXXSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVEVGRGN 180
YERQFRYH+H+G IY T K E CERL REQKVQ+RAVEV N
Sbjct: 121 LDDASDPALKALPLYERQFRYHFHKGRTIYNCTVVKHENCERLTREQKVQQRAVEVATRN 180
Query: 181 LEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDF 240
LEQYYRVI QN+ +FMKRY Q R+HSDLL NFGRDIEKLRS K+HP LQT + KCLLDF
Sbjct: 181 LEQYYRVIYQNFLEFMKRYKHQHRLHSDLLMNFGRDIEKLRSAKIHPYLQTESRKCLLDF 240
Query: 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEH 300
VKE++L+K+ E C+SSHRQFENK++QF+Q+F +VKR+VEEL RASL +KNLE+ +K+H
Sbjct: 241 VKEDNLKKAVENCASSHRQFENKIAQFQQMFVEVKRKVEELFACRASLSMKNLEVTVKDH 300
Query: 301 QRFINEQKSIMQSLSKDVSTVKKXXXXXXXXXXXXXXRPHDAVSALGPMYDVHDKSHLPR 360
+RFI+E+KSIMQSLSKDV+TVKK RPHDAVSALGPMY+VHDK+HLP+
Sbjct: 301 ERFIDEEKSIMQSLSKDVNTVKKLVDDCMSSQVSSSLRPHDAVSALGPMYEVHDKNHLPK 360
Query: 361 MQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDDI 420
MQAC SIS+LLDFC++KKNEMN FVH YMQKITYV+Y+IKDAKLQFPVFREAMVRQDD+
Sbjct: 361 MQACYNSISELLDFCKNKKNEMNNFVHGYMQKITYVTYIIKDAKLQFPVFREAMVRQDDL 420
Query: 421 FADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKXXXXXXXXXXFLKAN 480
FADLKLVRG+GPAYRACLAEVVRRKASMKLYMGMAGQLAE+LA K FLK +
Sbjct: 421 FADLKLVRGVGPAYRACLAEVVRRKASMKLYMGMAGQLAEKLAMKRETEVRKREEFLKTH 480
Query: 481 SVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVYAPEYLAGLRKG----EK 536
++PRD+L SMGLYDTP QCDVN+AP DT+LL+I+ISD++ YAPE+L GL +
Sbjct: 481 GPFVPRDVLASMGLYDTPTQCDVNVAPYDTSLLNIEISDVDRYAPEFLVGLHSKIASLKS 540
Query: 537 PVNVR-DGSHSVEAEEIALDALDREDPEELHEGCELVEIAGTSKMEVENAKLKAELASAI 595
+ + D S S E EEI +D D+++ +++ EL+EIAGTSKMEVENAKLKA+LASAI
Sbjct: 541 SLTMSGDSSLSAEPEEIGIDTFDKDNFDDILAASELIEIAGTSKMEVENAKLKADLASAI 600
Query: 596 ALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYE 655
+ ICSL P+ EYE LD+S+++ VLKNAA+KTAEAL KDEY KH+ MLK KQM C SYE
Sbjct: 601 SRICSLGPQFEYEVLDESEVENVLKNAADKTAEALQAKDEYEKHLLLMLKEKQMHCDSYE 660
Query: 656 KRIQELEQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGGGETHMPCISTSEPM 715
KRI+ELEQRLSD+YL Q+H+N KDVS L+ EK + K E+S E + +S SEPM
Sbjct: 661 KRIRELEQRLSDEYLQGQRHNN-KDVSGLNLMHEKVSEYKAEASSDVEGNKTHVSGSEPM 719
Query: 716 DEVSCVSNSFDAKLALLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELPINEK 775
DEVSCVSN L ++QP K REG+DENM+DSS +L+ PLDSSM+E + NEK
Sbjct: 720 DEVSCVSN-------LTSKQPCKAREGMDENMVDSSQVLSQPLDSSMLESQQN----NEK 768
Query: 776 DGKYKMPGQLGMSMTNSSTAESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALADKS 835
GK G++G+ ++NSSTAES P L + GLD K S +++L+L++ L +KS
Sbjct: 769 GGKDSEAGEMGVFLSNSSTAES---PQKSLDDNVATGRGLDAKDSGDIILELRNELMEKS 825
Query: 836 DQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAAD 895
++LSE ++KL MEEV L RELE QKLL+ESQMNCAHLENCLHEAREEAQTHLCAAD
Sbjct: 826 NKLSEMESKLNGAMEEVSNLSRELETNQKLLEESQMNCAHLENCLHEAREEAQTHLCAAD 885
Query: 896 RRASEYSALRASAVKLRGLFERLRSCVFASEGAGGFADSLRTLAQSLA 943
RRAS+Y+ALRASAVK+RGLFER RS V A G FADSLRTLAQ+LA
Sbjct: 886 RRASQYTALRASAVKMRGLFERFRSSVCAGSGIADFADSLRTLAQALA 933
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| WB|WBGene00006754 unc-15 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-020604-1 myhz2 "myosin, heavy polypeptide 2, fast muscle specific" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-000322-5 myhz1.1 "myosin, heavy polypeptide 1.1, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-070705-73 myhz1.2 "myosin, heavy polypeptide 1.2, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070705-74 myhz1.3 "myosin, heavy polypeptide 1.3, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| MGI|MGI:2445022 A630007B06Rik "RIKEN cDNA A630007B06 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| TAIR|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-081124-1 myhb "myosin, heavy chain b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-5336 wu:fd14a01 "wu:fd14a01" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 944 | |||
| pfam04108 | 408 | pfam04108, APG17, Autophagy protein Apg17 | 5e-05 |
| >gnl|CDD|217899 pfam04108, APG17, Autophagy protein Apg17 | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 73/353 (20%), Positives = 129/353 (36%), Gaps = 58/353 (16%)
Query: 191 NYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATC--KCLLDFVKEEH--- 245
+ Q A +++LRS + + + K L DF+ E+
Sbjct: 67 RTEWGQSVFVNLQNELDAADARLESTLDRLRSTIVPLAFRPKGEEPKTLYDFISEDGVEL 126
Query: 246 ----LRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTR----ASLPIKNLEMMI 297
L+ + + Q +N ++QF +K E+L+N R +
Sbjct: 127 LRDNLKIYIKEVPAIRAQLDNILNQFDSDLRSLK---EQLINKRLKDVTLPFQSSFGADT 183
Query: 298 KEHQRFINEQKSIMQSLSKD-VSTVKKLV---DDCLSCQLSSSLRPHDAVSALGPMYDV- 352
I+ S + SL + ++ L D C++ + P D + + +V
Sbjct: 184 TSSNPLISTIPSELNSLEHELADLLESLTNHFDQCVTAVKHTEGDPLDD-AEYDELLEVL 242
Query: 353 -HDKSHLPRMQACDRSISKLLDFCQD--KKNEMNV--FVHNYMQKITYVSYVIKDAKLQF 407
+D + LP + K L D + NE V F+ ++M KI + K+ +
Sbjct: 243 KNDAAELP-------DVVKELHTVIDEIENNEKRVKKFLSSHMSKIEELHSATKELLEEL 295
Query: 408 PVFREAMVRQDDIFAD---------LKLVRGIGP-------------AYRACLAEVVRRK 445
++E + R IFAD + + I +Y+ L EV RR+
Sbjct: 296 EKYKERLPRYLAIFADIRALWEDFKEPIQQYIQELSELCEFYDNFLNSYKGLLLEVERRR 355
Query: 446 ASMKLYMGMAGQLAERLATKREVEVRRREEFLKANSVYIPRDILGSMGLYDTP 498
A K + E+L +E + +RR++FL Y+P DI G D P
Sbjct: 356 AVRKKMEKILKFCNEQLDKLQEEDQKRRQQFLAEYGDYLPEDIWP--GEIDDP 406
|
Apg17 is required for activating Apg1 protein kinases. Length = 408 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 944 | |||
| KOG4572 | 1424 | consensus Predicted DNA-binding transcription fact | 100.0 | |
| PF04108 | 412 | APG17: Autophagy protein Apg17 ; InterPro: IPR0072 | 100.0 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 98.62 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 98.55 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 98.47 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 98.45 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 98.44 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 98.42 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 98.42 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 98.41 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 98.38 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 98.37 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 98.36 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 98.31 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 98.29 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 98.28 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 98.24 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 98.23 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 98.22 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 98.16 | |
| KOG0003 | 128 | consensus Ubiquitin/60s ribosomal protein L40 fusi | 98.15 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 98.13 | |
| KOG0004 | 156 | consensus Ubiquitin/40S ribosomal protein S27a fus | 98.12 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 98.06 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 97.99 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 97.98 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 97.93 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 97.91 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 97.87 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 97.69 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 97.41 | |
| KOG0005 | 70 | consensus Ubiquitin-like protein [Cell cycle contr | 97.39 | |
| cd01790 | 79 | Herp_N Homocysteine-responsive endoplasmic reticul | 97.19 | |
| cd01815 | 75 | BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC | 97.05 | |
| KOG0010 | 493 | consensus Ubiquitin-like protein [Posttranslationa | 96.62 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 96.62 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 96.6 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 96.59 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 96.42 | |
| KOG0001 | 75 | consensus Ubiquitin and ubiquitin-like proteins [P | 96.26 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 96.25 | |
| KOG0011 | 340 | consensus Nucleotide excision repair factor NEF2, | 95.93 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 95.78 | |
| cd01814 | 113 | NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT | 95.13 | |
| cd01801 | 77 | Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N- | 95.08 | |
| PLN02560 | 308 | enoyl-CoA reductase | 94.86 | |
| cd00196 | 69 | UBQ Ubiquitin-like proteins. Ubiquitin homologs; I | 94.81 | |
| PF04108 | 412 | APG17: Autophagy protein Apg17 ; InterPro: IPR0072 | 94.17 | |
| cd01788 | 119 | ElonginB Ubiquitin-like domain of Elongin B. Elong | 94.11 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 93.05 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 91.3 | |
| KOG4248 | 1143 | consensus Ubiquitin-like protein, regulator of apo | 87.95 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 87.93 | |
| PF13881 | 111 | Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB | 86.78 |
| >KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=344.88 Aligned_cols=472 Identities=18% Similarity=0.239 Sum_probs=366.4
Q ss_pred cCCceEEecCC-CCCCHHHHHHHHHHHhCCCCCCeEEeec-Cccccccchhcccc-CCCCCceEEEEeccccCCCCCCCC
Q 002272 21 ENGHSFELDCN-ENSPVEAVMRFIESAAGINFNDQLVLCL-DMKLEPQKLLSAYR-LPSDDKEVFIFNKLRLQSNSPPPS 97 (944)
Q Consensus 21 ~tG~sl~ld~~-~f~sVe~LK~~Ia~~~gIp~~~QILL~~-G~kL~~~~~L~~y~-l~td~~eIyVfdRrll~~~~~~p~ 97 (944)
.+|++++||.. ...|+.+||..|+..+|+...+|.|+.. |.+....+.++.|+ ++++++|||+||+...-.+.++..
T Consensus 2 drGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~lcde~~a~ 81 (1424)
T KOG4572|consen 2 DRGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGLCDENHAG 81 (1424)
T ss_pred CCCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhccccCCCCC
Confidence 58999999986 5789999999999999999999999766 67889999999998 889999999999988766555433
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCCChh--hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 98 PEQVDVLEVADPPPPALSQDPHPLDDAPDPA--LKALPSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVE 175 (944)
Q Consensus 98 ~e~~~i~e~~ipp~p~~~~~pspL~da~~p~--lraL~sye~lf~~~l~wA~al~~da~~~~e~ce~Lv~Ei~vq~raL~ 175 (944)
|.. .. .+ +..+|+.+.. .-++|+-...++.+..+|..++..|......|.+|+++-+++++||.
T Consensus 82 pdt-Ty--iF-----------qmedDae~kaeesL~mpa~fhivae~~elA~e~~eVaaelcqfCagLVhdehf~HkGWa 147 (1424)
T KOG4572|consen 82 PDT-TY--IF-----------QMEDDAEDKAEESLKMPAPFHIVAELPELAKECREVAAELCQFCAGLVHDEHFLHKGWA 147 (1424)
T ss_pred CCc-ee--ee-----------ecccHHHHHHHHHHcCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 331 11 00 1223333311 11245545677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHhhCCCCCccccc---------------------
Q 002272 176 VGRGNLEQYYRVINQNYNDFMK---RYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQT--------------------- 231 (944)
Q Consensus 176 aAvaNLe~~~~~lek~f~~f~~---~f~~ll~~~~~LL~~we~dLe~Lr~IpVhpaL~~--------------------- 231 (944)
+.++||++....+.+....|.. .+.+++++.+..|-+|...++.|++||+..+|..
T Consensus 148 AiiaNLddcsnk~dKl~fKFe~i~Sk~~e~IEdidlkLlhlgdaVeqlakIpllecltrhsyreclgrldelPeeedsek 227 (1424)
T KOG4572|consen 148 AIIANLDDCSNKMDKLGFKFELIHSKSEELIEDIDLKLLHLGDAVEQLAKIPLLECLTRHSYRECLGRLDELPEEEDSEK 227 (1424)
T ss_pred HHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHhcchHhhhhhhhHHHhhcccccCchhhhcch
Confidence 9999999999998887666655 5567788889999999999999999988776643
Q ss_pred -------------cc----------------------------------------------------------ccccccc
Q 002272 232 -------------AT----------------------------------------------------------CKCLLDF 240 (944)
Q Consensus 232 -------------ee----------------------------------------------------------~kTL~Df 240 (944)
.. ..+|.||
T Consensus 228 AelkrSTel~inPD~~rttneslltsfpksvehvspdtadaesgkeirescqstvhqqdettidtkdgdlpffn~sLfD~ 307 (1424)
T KOG4572|consen 228 AELKRSTELPINPDEKRTTNESLLTSFPKSVEHVSPDTADAESGKEIRESCQSTVHQQDETTIDTKDGDLPFFNCSLFDF 307 (1424)
T ss_pred HhhccccccCCCCCCccccchhhhhcCcccccccCCccccchhhhHHHHHhhhhhhhcccccccccCCCcccccchHHHH
Confidence 00 2678999
Q ss_pred cCh----hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHhh-ccCCchhhhHHHHHHHHHHHHHHHHHHH
Q 002272 241 VKE----EHLRKSAETCSSSHRQFENKVSQ-FKQIFDDVKRRVE--ELLNT-RASLPIKNLEMMIKEHQRFINEQKSIMQ 312 (944)
Q Consensus 241 Vd~----e~Lrk~ae~C~~s~~~f~~Kl~~-Lk~~i~~Ik~~vd--~L~~~-~~~~s~~~Le~~i~e~~~Ll~eq~siaQ 312 (944)
|.. ..|....+.|.....+++.++.. |-..........+ .+... .-..-.+.|+.++....+++++++.+++
T Consensus 308 IamaD~~adldgL~~kcfdkirqLd~qia~pfiaecqqt~akldNQemkafKGiedRf~aLd~miaSC~rlvnEqKeLah 387 (1424)
T KOG4572|consen 308 IAMADPEADLDGLPDKCFDKIRQLDEQIAIPFIAECQQTHAKLDNQEMKAFKGIEDRFSALDFMIASCERLVNEQKELAH 387 (1424)
T ss_pred HHhcCCccchhhhhHHHHHHHHhhchhhhhHHHHHHHHHHHhhcchhhHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 873 35555666665555554444322 1111111110000 00000 0001134688899999999999999999
Q ss_pred HHHHhHHHHHhhhhhhccccccCCCCCCccccccCcchhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 313 SLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQK 392 (944)
Q Consensus 313 ~LssD~e~v~~l~D~~v~~~lsss~~~~d~vS~Ls~m~e~H~kelLP~L~~~~~eL~d~l~~~~~~KneL~~~~~~~Lr~ 392 (944)
++-.++-..-++.| .+.++++++.|.+.++ .|+++..++.++.+.|.++|.++.++++.+|.|
T Consensus 388 gflAn~keaekikD----------------an~LPdic~eHan~ll-iifeN~refldikqkcdqaKQEiakNLhtRlk~ 450 (1424)
T KOG4572|consen 388 GFLANIKEAEKIKD----------------ANKLPDICEEHANCLL-IIFENFREFLDIKQKCDQAKQEIAKNLHTRLKG 450 (1424)
T ss_pred HHHHhhhhcccccc----------------cccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Confidence 99877666544443 4789999999988765 799999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHhhhHHHHHHHHHhhhhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 393 ITYVSY-VIKDAKLQFPVFREAMVRQDDIFADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVR 471 (944)
Q Consensus 393 Is~IQs-~I~evk~~L~~l~e~L~~~~~~F~~L~~v~~lP~aYga~LiEVvRRRew~~k~~~~a~~lAEeLa~lrEeE~k 471 (944)
..++.. +.....+.+..+.-.+...+.+++.+..+++.|.+|...|+||||||-|...|..|++.+...-+.|+++|.+
T Consensus 451 ccfqml~adqdgek~~allel~ieale~hmdiieairdaP~lYclaVsEiVRRklfike~eEWaga~skd~aqf~eaEek 530 (1424)
T KOG4572|consen 451 CCFQMLDADQDGEKDIALLELKIEALEIHMDIIEAIRDAPILYCLAVSEIVRRKLFIKELEEWAGAHSKDCAQFSEAEEK 530 (1424)
T ss_pred hheeehhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHH
Confidence 887654 3444555566666666667778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCChhhhccCCCCCCCCceeEecC--CCCCCCcCCCHHHHh---hhhh
Q 002272 472 RREEFLKANSVYIPRDILGSMGLYDTPNQCDVNIA--PSDTNLLDIDISDLE---VYAP 525 (944)
Q Consensus 472 rRe~F~k~fG~~LP~dL~~~~GL~d~pP~~eVnl~--~~D~~LP~I~r~Dle---~~i~ 525 (944)
.|+.|-+.|.++|.+.+| +|.+|+.|.+-++.. .||+.||+|..+||. .++|
T Consensus 531 kREqfGk~fkKhFLha~f--f~gfDn~P~~fckak~eKfDcdLPdIa~edik~Lqd~cP 587 (1424)
T KOG4572|consen 531 KREQFGKKFKKHFLHALF--FGGFDNLPEFFCKAKLEKFDCDLPDIAKEDIKDLQDACP 587 (1424)
T ss_pred HHHHHHHHHHHHHHHHhh--hcccccCCHHHhcCChhhcCCCCchhhHHHHHHHHHhCh
Confidence 999999999999999999 477777666666644 499999999999875 3555
|
|
| >PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein | Back alignment and domain information |
|---|
| >cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP | Back alignment and domain information |
|---|
| >KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4 | Back alignment and domain information |
|---|
| >cd01801 Tsc13_N Ubiquitin-like domain of Tsc13 | Back alignment and domain information |
|---|
| >PLN02560 enoyl-CoA reductase | Back alignment and domain information |
|---|
| >cd00196 UBQ Ubiquitin-like proteins | Back alignment and domain information |
|---|
| >PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >cd01788 ElonginB Ubiquitin-like domain of Elongin B | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 2e-17
Identities = 110/732 (15%), Positives = 213/732 (29%), Gaps = 225/732 (30%)
Query: 189 NQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDFVKE----- 243
+ ++ DF + Q + D+L+ F CK + D K
Sbjct: 3 HHHHMDF--ETGEHQYQYKDILSVFEDAFVD-----------NFDCKDVQDMPKSILSKE 49
Query: 244 --EHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQ 301
+H+ S + S + R F +S+ +++ V++ VEE+L N +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQKFVEEVLR-------INYK------- 92
Query: 302 RFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRM 361
F+ +++ + S + ++ + R ++ V K ++ R+
Sbjct: 93 -FLMSP---IKTEQRQPSMMTRMYIEQRD-------RLYNDN-------QVFAKYNVSRL 134
Query: 362 QACDRSISKLLDFCQDKKNEMNVFVHNYMQ---KITYVSYVIKDAKLQ----FPVF---- 410
Q + LL + + + NV + + K V K+Q F +F
Sbjct: 135 QPYLKLRQALL---ELRPAK-NVLIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 411 -REAMVRQDDIFADL-KLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREV 468
+ + L KL+ I P + + R + L +R +
Sbjct: 190 KNCN--SPETVLEMLQKLLYQIDPNWTS-------RSDHSSNIKLRIHSIQAEL--RRLL 238
Query: 469 EVRRREEFLKANSVYIPRD-----ILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVY 523
+ + E N + + + + L C + + + D
Sbjct: 239 KSKPYE-----NCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDF-------- 280
Query: 524 APEYLAGLRKGEKPVN-VRDGSHSVEAEEIALDALDREDPEEL-HEGCE----LVEIAGT 577
L+ ++ E + + L LD P++L E + I
Sbjct: 281 ----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAE 335
Query: 578 SKME----------VENAKLKAELASAIALICSLCP-EME--YESL----DDSKL-DGVL 619
S + V KL + S++ L P E ++ L + + +L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLN---VLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 620 --------KNAAEKTAEALH---LKDEYGK-------HIQAMLKAKQMQCVSYEKRIQEL 661
K+ LH L ++ K I LK K L
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-------EYAL 445
Query: 662 EQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGG------GETHMPCISTSEPM 715
+ + D Y + + + DD P G H+ I E M
Sbjct: 446 HRSIVDHYNIPKTFDS--------------DDLIPPYLDQYFYSHIGH-HLKNIEHPERM 490
Query: 716 DEVSCVSNSF---DAKLALLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELPI 772
V F + K+ S +LN +P+ I
Sbjct: 491 TLFRMVFLDFRFLEQKI-----------RHDSTAWNASGSILNTLQQLKFYKPY-----I 534
Query: 773 NEKDGKYKMPGQLGMSMTNSSTAESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALA 832
+ D KY+ + + E N++ T +L+ + AL
Sbjct: 535 CDNDPKYER--LVNAILDFLPKIE-----ENLICSKYT-----------DLL---RIALM 573
Query: 833 DKSDQLSETQTK 844
+ + + E K
Sbjct: 574 AEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 944 | |||
| 4hpq_C | 413 | ATG17, KLTH0D15642P; autophagy, protein transport; | 99.93 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 98.87 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 98.76 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 98.68 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 98.66 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 98.65 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 98.65 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 98.64 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 98.63 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 98.63 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 98.62 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 98.61 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 98.61 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 98.61 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 98.6 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 98.59 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 98.59 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 98.58 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 98.57 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 98.57 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 98.55 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 98.54 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 98.53 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 98.53 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 98.53 | |
| 1ttn_A | 106 | DC-UBP, dendritic cell-derived ubiquitin-like prot | 98.52 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 98.51 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 98.51 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 98.51 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 98.5 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 98.49 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 98.49 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 98.49 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 98.48 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 98.46 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 98.46 | |
| 2lxa_A | 87 | Ubiquitin-like protein MDY2; ubiquitin-like domain | 98.45 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 98.44 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 98.42 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 98.41 | |
| 1v5t_A | 90 | 8430435I17RIK protein; hypothetical protein, ubiqu | 98.38 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 98.37 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 98.37 | |
| 3b1l_X | 76 | E3 ubiquitin-protein ligase parkin; proteasome, AL | 97.71 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 98.35 | |
| 2dzm_A | 100 | FAS-associated factor 1; ubiquitin-like domain, HF | 98.34 | |
| 2kdi_A | 114 | Ubiquitin, vacuolar protein sorting-associated pro | 98.33 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 98.33 | |
| 4efo_A | 94 | Serine/threonine-protein kinase TBK1; ubiquitin li | 98.32 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 98.32 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 98.31 | |
| 1wgg_A | 96 | Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti | 98.31 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 98.3 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 98.29 | |
| 3l0w_B | 169 | Monoubiquitinated proliferating cell nuclear antig | 98.28 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 98.27 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 98.26 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 98.26 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 98.25 | |
| 1wgd_A | 93 | Homocysteine-responsive endoplasmic reticulum- res | 98.21 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 98.18 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 98.17 | |
| 3u5e_m | 128 | 60S ribosomal protein L40; translation, ribosome, | 98.17 | |
| 3q3f_A | 189 | Ribonuclease/ubiquitin chimeric protein; domain SW | 98.17 | |
| 2kdb_A | 99 | Homocysteine-responsive endoplasmic reticulum- res | 98.14 | |
| 1we7_A | 115 | SF3A1 protein; structural genomics, ubiquitin-like | 98.13 | |
| 1x1m_A | 107 | Ubiquitin-like protein SB132; structural genomics, | 98.09 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 98.08 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 98.07 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 98.07 | |
| 3u5c_f | 152 | 40S ribosomal protein S31; translation, ribosome, | 98.05 | |
| 1v2y_A | 105 | 3300001G02RIK protein; hypothetical protein, ubiqu | 98.04 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 98.02 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 98.02 | |
| 1wgh_A | 116 | Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo | 98.02 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 97.98 | |
| 1wia_A | 95 | Hypothetical ubiquitin-like protein (riken cDNA 20 | 97.97 | |
| 2gow_A | 125 | HCG-1 protein, ubiquitin-like protein 3; BC059385, | 97.95 | |
| 3ai5_A | 307 | Yeast enhanced green fluorescent protein, ubiquit; | 97.84 | |
| 2dzj_A | 88 | Synaptic glycoprotein SC2; ubiquitin-like fold, st | 97.8 | |
| 1wf9_A | 107 | NPL4 family protein; beta-grAsp fold like domain, | 97.78 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 97.76 | |
| 1se9_A | 126 | Ubiquitin family; ubiquitin-like, cell-free, wheat | 97.75 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 97.72 | |
| 1oqy_A | 368 | HHR23A, UV excision repair protein RAD23 homolog A | 97.71 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 97.66 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 97.65 | |
| 2xzm_9 | 189 | RPS31E; ribosome, translation; 3.93A {Tetrahymena | 97.64 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 97.57 | |
| 2kzr_A | 86 | Ubiquitin thioesterase OTU1; structural genomics, | 97.54 | |
| 3shq_A | 320 | UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila | 97.49 | |
| 1wm3_A | 72 | Ubiquitin-like protein SMT3B; ubiquitin fold, half | 97.4 | |
| 2eke_C | 106 | Ubiquitin-like protein SMT3; UBC9, SUMO binding mo | 97.37 | |
| 2io0_B | 91 | Small ubiquitin-related modifier 2 precursor; SUMO | 97.34 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 97.31 | |
| 2k8h_A | 110 | Small ubiquitin protein; SUMO, post-translational | 97.23 | |
| 2d07_B | 93 | Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho | 97.23 | |
| 1wz0_A | 104 | Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li | 97.14 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 96.47 | |
| 3kyd_D | 115 | Small ubiquitin-related modifier 1; SUMO, thioeste | 95.88 | |
| 3pge_A | 200 | SUMO-modified proliferating cell nuclear antigen; | 95.72 | |
| 3tix_A | 207 | Ubiquitin-like protein SMT3, RNA-induced transcri | 95.1 | |
| 3v7o_A | 227 | Minor nucleoprotein VP30; ssgcid, seattle structur | 92.41 | |
| 2jxx_A | 97 | Nfatc2-interacting protein; nuclear factor of acti | 91.96 | |
| 2pjh_A | 80 | Protein NPL4, nuclear protein localization protein | 89.97 | |
| 2l76_A | 95 | Nfatc2-interacting protein; ubiquitin-like domain, | 88.11 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 88.08 | |
| 3uf8_A | 209 | Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- | 87.53 | |
| 4hpq_C | 413 | ATG17, KLTH0D15642P; autophagy, protein transport; | 86.59 | |
| 3ix6_A | 360 | TS, tsase, thymidylate synthase; niaid, ssgcid, se | 81.52 |
| >4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=240.40 Aligned_cols=340 Identities=13% Similarity=0.149 Sum_probs=221.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHH
Q 002272 133 PSYERQFRYHYHRGHAIYIRTQAKIE-------MCERLLREQKVQERAVEVGRGNLEQYY--RVINQ---NYNDFMKRYS 200 (944)
Q Consensus 133 ~sye~lf~~~l~wA~al~~da~~~~e-------~ce~Lv~Ei~vq~raL~aAvaNLe~~~--~~lek---~f~~f~~~f~ 200 (944)
..|-+.-+..+.+|+.+++.|+.... .+...++.++++..|+.-....|...+ +.+.. .+++....|.
T Consensus 7 ~~~~~~A~~tL~~AQ~lC~~A~~~l~~t~~~L~~~~~~~~k~~Fl~~~l~~Q~~~L~~~ilr~~i~~~li~~e~~~~~f~ 86 (413)
T 4hpq_C 7 EKLLENSRKFLTGAKLICQESNDHLTTTKLRIREWQKFQSKLHFVLDCIQQQTKFLSEILLREGIGRNLIEEEWSQTVLV 86 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 34667778888899999888876443 466666777777788777777776332 34444 4455556677
Q ss_pred HHHHHHHHHHhhHHHHHHHhhCCCCCcccccccccccccccChhH---HHHHHHHH-------HHHHHHHHHHHHHH---
Q 002272 201 QQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDFVKEEH---LRKSAETC-------SSSHRQFENKVSQF--- 267 (944)
Q Consensus 201 ~ll~~~~~LL~~we~dLe~Lr~IpVhpaL~~ee~kTL~DfVd~e~---Lrk~ae~C-------~~s~~~f~~Kl~~L--- 267 (944)
++.+.++...++++..|++|++|++++.| ++.++|+||||.++ |++....| .....+|++-+.++
T Consensus 87 ~lv~~l~~~~~~L~~~~~~Lr~T~v~~~~--~~~k~L~DFIs~~sv~~L~~kLke~p~I~~~i~~i~~~y~~~l~~~~~~ 164 (413)
T 4hpq_C 87 RLVNDMKFWQNEITKMMNKLDNITNEIDQ--QHNSKLGDFISRDSSHILDSKLNEIPTIRKQVENITRQYQTMLAKVQSQ 164 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCCSS--SCCCTTTTSSCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccc--CCCCcHHHHcCHhhHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999 33399999999643 34444443 55666777777776
Q ss_pred --HHHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhccccccCCCCCCccccc
Q 002272 268 --KQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSA 345 (944)
Q Consensus 268 --k~~i~~Ik~~vd~L~~~~~~~s~~~Le~~i~e~~~Ll~eq~siaQ~LssD~e~v~~l~D~~v~~~lsss~~~~d~vS~ 345 (944)
+..+..|+..+...+...+..+..-......+...+- ..||+.|.+..+|+ |.|+... +
T Consensus 165 l~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ll~el~~le---~elA~~L~SLT~Hy----DqC~~l~-----------~- 225 (413)
T 4hpq_C 165 LVESRMKGLRDEFSSKFGDQCRENLKLNEEFTNEADQLE---QELADFLKSFTDHF----DKCSALS-----------S- 225 (413)
T ss_dssp HHHHHHHHHHHHHC--------------CHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHTT-----------T-
T ss_pred HHHhhHHHHHHHHHhccCCCCccccchhhhhhHHHHHHH---HHHHHHHHHHHHHH----HHHHHHh-----------c-
Confidence 4455556665554444322222111112222333332 34555555555554 6665321 1
Q ss_pred cCcchhhhhccchHhHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH---HHHHHHH
Q 002272 346 LGPMYDVHDKSHLPRMQACDRSISKLLDFCQDK---------------------KNEMNVFVHNYMQKIT---YVSYVIK 401 (944)
Q Consensus 346 Ls~m~e~H~kelLP~L~~~~~eL~d~l~~~~~~---------------------KneL~~~~~~~Lr~Is---~IQs~I~ 401 (944)
.++...++.+++..|...+.++.+++..+... +..+...+-..+..+. ..-..+.
T Consensus 226 -~~~s~~e~~elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~ 304 (413)
T 4hpq_C 226 -RSVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFE 304 (413)
T ss_dssp -TSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCChHhHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444445555555555555554444444332 2222211111111111 1222334
Q ss_pred HHhhhHHHHHHHHHhhhhHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002272 402 DAKLQFPVFREAMVRQDDIFADLKLV-RGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAN 480 (944)
Q Consensus 402 evk~~L~~l~e~L~~~~~~F~~L~~v-~~lP~aYga~LiEVvRRRew~~k~~~~a~~lAEeLa~lrEeE~krRe~F~k~f 480 (944)
++...|..|++.+..+.+.|..|..+ .++..+|.++|+||.|||.+.+++.+.+++++++|++++++|.++|+.|+.++
T Consensus 305 ~i~e~l~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e~d~~~Re~F~~~~ 384 (413)
T 4hpq_C 305 GISALIQKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINTADLRERQMFLLEN 384 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555667778887887889999965 58999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhhccCCCCC
Q 002272 481 SVYIPRDILGSMGLYD 496 (944)
Q Consensus 481 G~~LP~dL~~~~GL~d 496 (944)
|+|||.||| ||+-|
T Consensus 385 G~yLP~diw--pg~id 398 (413)
T 4hpq_C 385 GNYLPETIW--PDEIG 398 (413)
T ss_dssp SSSSCGGGS--TTTSS
T ss_pred cccCChhhC--CCccc
Confidence 999999999 68644
|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens} | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p | Back alignment and structure |
|---|
| >3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} | Back alignment and structure |
|---|
| >2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A | Back alignment and structure |
|---|
| >1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f | Back alignment and structure |
|---|
| >1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* | Back alignment and structure |
|---|
| >2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
| >2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B | Back alignment and structure |
|---|
| >2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
| >2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A | Back alignment and structure |
|---|
| >1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus} | Back alignment and structure |
|---|
| >2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* | Back alignment and structure |
|---|
| >4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340} | Back alignment and structure |
|---|
| >3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 944 | ||||
| d2bwfa1 | 73 | d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc | 0.004 |
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: DSK2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 34.7 bits (80), Expect = 0.004
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 17 VHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPS 76
+HI +E++ S V I A GI +Q ++ L+ + + +Y +
Sbjct: 4 IHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQD 63
Query: 77 DDK 79
Sbjct: 64 GHS 66
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 944 | |||
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 98.89 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 98.89 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 98.86 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 98.86 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 98.76 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 98.71 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 98.66 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 98.66 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 98.65 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 98.63 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 98.62 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 98.62 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 98.59 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 98.54 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 98.52 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 98.47 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 98.42 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 98.42 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 98.4 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 98.4 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 98.21 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 98.15 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 98.09 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 98.04 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 97.97 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 97.91 | |
| d1wgda_ | 93 | Homocysteine-responsive endoplasmic reticulum-resi | 97.63 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 97.63 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 97.56 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 97.54 | |
| d1se9a_ | 101 | Hypothetical protein At3g01050 {Thale cress (Arabi | 97.52 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 97.44 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 97.32 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 96.93 | |
| d1x1ma1 | 94 | Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta | 96.54 | |
| d1wm3a_ | 72 | SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | 92.17 | |
| d1wf9a1 | 94 | NPL4-like protein 1 {Thale cress (Arabidopsis thal | 85.38 |
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like domain of parkin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=1.6e-09 Score=93.75 Aligned_cols=73 Identities=11% Similarity=0.250 Sum_probs=69.3
Q ss_pred eEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 14 KLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 14 ~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.|+||+. .+|+++.+++.+.+||.+||+.|+..+|||++.|.|++.|..|.+..+|.+|++. +.++|+|..|.
T Consensus 2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~-~~sti~lv~R~ 75 (78)
T d2zeqa1 2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLE-QQSIVHIVQRP 75 (78)
T ss_dssp CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCC-TTCEEEEEESS
T ss_pred ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCC-CCCEEEEEecc
Confidence 5999998 7999999999999999999999999999999999999999999999999999998 88999998764
|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|