Citrus Sinensis ID: 002274
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 944 | 2.2.26 [Sep-21-2011] | |||||||
| Q66X93 | 909 | Staphylococcal nuclease d | yes | no | 0.828 | 0.860 | 0.335 | 1e-118 | |
| Q78PY7 | 910 | Staphylococcal nuclease d | yes | no | 0.828 | 0.859 | 0.335 | 1e-118 | |
| Q7KZF4 | 910 | Staphylococcal nuclease d | yes | no | 0.829 | 0.860 | 0.332 | 1e-118 | |
| Q5REU4 | 910 | Staphylococcal nuclease d | yes | no | 0.829 | 0.860 | 0.332 | 1e-117 | |
| Q863B3 | 910 | Staphylococcal nuclease d | yes | no | 0.829 | 0.860 | 0.332 | 1e-117 | |
| Q7ZT42 | 897 | Staphylococcal nuclease d | yes | no | 0.820 | 0.863 | 0.327 | 1e-112 | |
| Q9Y7U7 | 878 | Staphylococcal nuclease d | yes | no | 0.460 | 0.495 | 0.309 | 1e-49 | |
| Q9BXT4 | 1180 | Tudor domain-containing p | no | no | 0.151 | 0.121 | 0.329 | 2e-13 | |
| Q99MV1 | 1172 | Tudor domain-containing p | no | no | 0.136 | 0.110 | 0.301 | 5e-12 | |
| Q58EK5 | 1175 | Tudor domain-containing p | no | no | 0.184 | 0.148 | 0.313 | 1e-09 |
| >sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust.
Identities = 322/959 (33%), Positives = 490/959 (51%), Gaps = 177/959 (18%)
Query: 2 QEVTFRVDYAVPNIGREFGTVILGD----KNVAMLVVSEGWAKVKEQGSQKGEASPFLAE 57
+EV F ++ P GRE+G + LG +N+A +V+EG A +E G + +P
Sbjct: 92 KEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLASRRE-GMRAN--NPEQNR 147
Query: 58 LLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVE 117
L EEQAK G WS+ G +IR+L I + +F +D++ +P+ I+E
Sbjct: 148 LSECEEQAKASKKGMWSE--GNGSHTIRDLK-YTIENPRHF-----VDSHHQKPVNAIIE 199
Query: 118 QARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLN 177
RDGS +R LLP+ V V ++GI+ P R ET+G
Sbjct: 200 HVRDGSVVRALLLPDHYLVTVMLSGIKCPTFRR-----------ETDGS----------- 237
Query: 178 SAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDG 237
T EPFA +AK+FTE R+L R+V+I+LE +N++G++ +P+G
Sbjct: 238 ---------------ETPEPFAAEAKFFTESRLLQRDVQIILESCHN-QNILGTILHPNG 281
Query: 238 ETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSK 297
++ L++ G A+ ++WS + A++ L+AA+ AK+ RLR+W +YVPP +N
Sbjct: 282 ----NITELLLKEGFARCVDWSIAVYTRGAEK-LRAAERFAKERRLRIWRDYVPPTANLD 336
Query: 298 AIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPK-----IGNPRKDE 352
D+ F KV++V++ D I+V +S Y + ++LSSIR P+ I + K
Sbjct: 337 Q-KDKQFVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPPRLEGDNIQDKNKKL 389
Query: 353 KP---AAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKG 409
+P Y EAREFLR +LIG++V+V ++Y R A+P
Sbjct: 390 RPLYDIPYMFEAREFLRKKLIGKKVSVTVDYIRP----ASP------------------- 426
Query: 410 QAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELV 469
A PA E AT T G+N+AE +
Sbjct: 427 -ATETVPAFSERTCATVT--------------------------------IGGINIAEAL 453
Query: 470 VSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKK 528
VS+GL VI +R D ++RS++YD LLAAEARA KG +S KE P+ + D++ +K
Sbjct: 454 VSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS-GDTQK 512
Query: 529 ARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--GRN------- 579
A+ FLPFLQR+ R AVVEYV SG R K+ +PKETC I F +G+ CP RN
Sbjct: 513 AKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQE 572
Query: 580 -ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTS 638
E +S EA L ++ +LQR+VE+EVE++D+ G F+G L N++V+L+E L+K+
Sbjct: 573 GEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLSVLLVEHALSKVH-- 630
Query: 639 FGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEGKQKEVLKVVVTEIL 696
F ++R L AE++AK +K K+W +Y E EEV + + V VTEI
Sbjct: 631 FTAERSAYYKPLLSAEEAAKQRKEKVWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEIT 690
Query: 697 GGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAM 754
FYVQ V G Q + + + + S PV GA+ P++GE +A+F D W RA
Sbjct: 691 DDLHFYVQDVETGTQ-LEKLMENMRSDISSHPPVEGAYAPRRGEFCIAKF-VDGEWYRAR 748
Query: 755 IVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKI 812
+ EKVES K VFYIDYGN+E++P +L + P+ S+ P A + A+I++
Sbjct: 749 V-----EKVES-PAKVHVFYIDYGNREILPSTRLGALPPAFSTRVLPAQATEYAFAFIQV 802
Query: 813 PALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQG-TGTLLHVTLVAVDAE 871
P ED ++ ++V + ++ L + + + HVTL D++
Sbjct: 803 PQDEDA---------------RTDAVDSVVRDIQNTQCLLNVEHLSASCPHVTLQFADSK 847
Query: 872 ISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDED 930
+ +V+EGL VE RK + Q + QE AK+AR+ +W+YGD ++DD D
Sbjct: 848 GDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDAD 903
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Functions as a bridging factor between STAT6 and the basal transcription factor. Plays a role in PIM1 regulation of MYB activity. Plays a role in cell viability. Functions as a transcriptional coactivator for STAT5. Plays a role in cell viability. Rattus norvegicus (taxid: 10116) |
| >sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio GN=snd1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Y7U7|SND1_SCHPO Staphylococcal nuclease domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snd1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q99MV1|TDRD1_MOUSE Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q58EK5|TDRD1_DANRE Tudor domain-containing protein 1 OS=Danio rerio GN=tdrd1 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 944 | ||||||
| 356516458 | 990 | PREDICTED: staphylococcal nuclease domai | 0.962 | 0.918 | 0.738 | 0.0 | |
| 356508886 | 990 | PREDICTED: staphylococcal nuclease domai | 0.962 | 0.918 | 0.737 | 0.0 | |
| 225447723 | 1000 | PREDICTED: staphylococcal nuclease domai | 0.962 | 0.909 | 0.737 | 0.0 | |
| 449440482 | 988 | PREDICTED: staphylococcal nuclease domai | 0.958 | 0.915 | 0.727 | 0.0 | |
| 307135996 | 988 | short-chain dehydrogenase/reductase [Cuc | 0.958 | 0.915 | 0.725 | 0.0 | |
| 255539999 | 988 | ebna2 binding protein P100, putative [Ri | 0.960 | 0.918 | 0.737 | 0.0 | |
| 224136368 | 984 | predicted protein [Populus trichocarpa] | 0.955 | 0.916 | 0.738 | 0.0 | |
| 357464897 | 992 | nuclease domain-containing protein [Medi | 0.961 | 0.915 | 0.726 | 0.0 | |
| 356527378 | 995 | PREDICTED: staphylococcal nuclease domai | 0.963 | 0.914 | 0.729 | 0.0 | |
| 356512924 | 991 | PREDICTED: staphylococcal nuclease domai | 0.962 | 0.917 | 0.727 | 0.0 |
| >gi|356516458|ref|XP_003526911.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
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Score = 1430 bits (3702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/947 (73%), Positives = 801/947 (84%), Gaps = 38/947 (4%)
Query: 2 QEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRL 61
+EVTFRVDY VP+I R+FGTV LGDKNVAMLVVS+GW KV+EQG QKGEASP+LAELLRL
Sbjct: 78 KEVTFRVDYNVPSISRDFGTVFLGDKNVAMLVVSQGWVKVREQGQQKGEASPYLAELLRL 137
Query: 62 EEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARD 121
EEQAK +GLGRWSKVPGAAEASIRNLPPSA+GD SNF+AM L+ANKG PM+ +VEQ RD
Sbjct: 138 EEQAKQEGLGRWSKVPGAAEASIRNLPPSALGDPSNFDAMTFLNANKGLPMEAVVEQVRD 197
Query: 122 GSTLRVYLLPEFQFVQVFVAGIQAPAVARR--PAAIVDTD--TEETNGDVSAAEAVAPLN 177
GSTLR+YLLPEFQFVQVFVAGIQAP + RR P ++V+ + +++TNGDV E APL
Sbjct: 198 GSTLRIYLLPEFQFVQVFVAGIQAPQMGRRAAPESVVEPELVSDDTNGDV-PGEPQAPLT 256
Query: 178 SAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDG 237
SAQRLA ST++ ++ +PFA DAK+FTEMRVLNR+VR+VLEGVDKF NLIGSV+YPDG
Sbjct: 257 SAQRLAVSTSA---ETAADPFAHDAKFFTEMRVLNRDVRLVLEGVDKFSNLIGSVYYPDG 313
Query: 238 ETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSK 297
E+AKDLA+ELVENG AKY+EWSANMMEE+AKR+LK A+LQAKK RLRMWTNYVPP SNSK
Sbjct: 314 ESAKDLALELVENGYAKYVEWSANMMEEEAKRKLKTAELQAKKDRLRMWTNYVPPPSNSK 373
Query: 298 AIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAY 357
AIH+QNF+GKVVEVVSGDCI+VADDSIPYG+ LAERRVNLSSIRCPK+GNPR+DEKPA Y
Sbjct: 374 AIHNQNFSGKVVEVVSGDCIVVADDSIPYGSPLAERRVNLSSIRCPKMGNPRRDEKPAPY 433
Query: 358 AREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPA 417
AREA+EFLRTRLIGRQVNVQMEYSRKV V A
Sbjct: 434 AREAKEFLRTRLIGRQVNVQMEYSRKVSPTDGSVVPSA---------------------- 471
Query: 418 GEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNV 477
A+++R++DFGS+FLLS K + DDA + A A Q GVNVAEL+V RG G V
Sbjct: 472 ------ASDSRVMDFGSVFLLSGAKVDNDDAPSSAPP-AGSQQNGVNVAELIVGRGFGTV 524
Query: 478 INHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQ 537
I HRDFEERSNYYDALLAAE+RA +G+KG +S+K+PPVMHI DLT A KKARDFLPFL
Sbjct: 525 IRHRDFEERSNYYDALLAAESRAISGRKGTHSAKDPPVMHITDLTTASAKKARDFLPFLH 584
Query: 538 RSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQR 597
RSRR+PAVVEYVLSGHRFK+LIPKETCSIAFSFSGVRCPGR E YS+EA+ LMR+KI+QR
Sbjct: 585 RSRRVPAVVEYVLSGHRFKLLIPKETCSIAFSFSGVRCPGRAEPYSDEAIALMRRKIMQR 644
Query: 598 DVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 657
DVEIEVETVDRTGTFLGSLWESRTNVA+ LLEAGLAKLQTSFGSDRIPD HLL+QAE+SA
Sbjct: 645 DVEIEVETVDRTGTFLGSLWESRTNVAITLLEAGLAKLQTSFGSDRIPDFHLLDQAEQSA 704
Query: 658 KSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQ 717
K QKLKIWEN+VEGEEVSNGAAVE KQ+EVLKV+VTE+LGGGKFYVQ VGDQK+AS+QQQ
Sbjct: 705 KRQKLKIWENFVEGEEVSNGAAVENKQQEVLKVIVTEVLGGGKFYVQTVGDQKIASIQQQ 764
Query: 718 LASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDY 777
LASLNL++APV+GAFNPKKG+IVL F AD SW RAM+VN PR VES ND FEVFY+DY
Sbjct: 765 LASLNLKDAPVLGAFNPKKGDIVLCYFHADKSWYRAMVVNTPRGPVESPNDLFEVFYVDY 824
Query: 778 GNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 837
GNQE+VPY++LRP+DPS+S+ P LAQLCSLAYIKIP LE+++G EAAE+L+E T NS E
Sbjct: 825 GNQEVVPYSQLRPVDPSVSAAPGLAQLCSLAYIKIPNLEEDFGQEAAEYLSELTLNSGKE 884
Query: 838 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDR 897
FRA VEE+D+SGGK+KGQGTG +L VTLVAVDAEIS+N M+QEGLAR E+R RW +DR
Sbjct: 885 FRAKVEEKDTSGGKVKGQGTGAILAVTLVAVDAEISVNAAMLQEGLARTEKRNRWDRKDR 944
Query: 898 QAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGGRR 944
Q AL+NLE FQ+EAKT+R GMWQYGDIQSDDED P RK GGR+
Sbjct: 945 QTALDNLENFQDEAKTSRRGMWQYGDIQSDDEDTAPPP-RKTGGGRK 990
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508886|ref|XP_003523184.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225447723|ref|XP_002273150.1| PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera] gi|296088151|emb|CBI35621.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449440482|ref|XP_004138013.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] gi|449522262|ref|XP_004168146.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|307135996|gb|ADN33852.1| short-chain dehydrogenase/reductase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
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| >gi|255539999|ref|XP_002511064.1| ebna2 binding protein P100, putative [Ricinus communis] gi|223550179|gb|EEF51666.1| ebna2 binding protein P100, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224136368|ref|XP_002322312.1| predicted protein [Populus trichocarpa] gi|222869308|gb|EEF06439.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357464897|ref|XP_003602730.1| nuclease domain-containing protein [Medicago truncatula] gi|355491778|gb|AES72981.1| nuclease domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356527378|ref|XP_003532288.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356512924|ref|XP_003525164.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 944 | ||||||
| TAIR|locus:2159218 | 985 | Tudor2 "TUDOR-SN protein 2" [A | 0.539 | 0.516 | 0.636 | 2.30000000002e-313 | |
| ZFIN|ZDB-GENE-030131-3124 | 913 | snd1 "staphylococcal nuclease | 0.468 | 0.484 | 0.356 | 4.5e-113 | |
| RGD|631340 | 909 | Snd1 "staphylococcal nuclease | 0.467 | 0.485 | 0.362 | 2.2e-111 | |
| UNIPROTKB|Q66X93 | 909 | Snd1 "Staphylococcal nuclease | 0.467 | 0.485 | 0.362 | 2.2e-111 | |
| MGI|MGI:1929266 | 910 | Snd1 "staphylococcal nuclease | 0.467 | 0.484 | 0.358 | 2.8e-111 | |
| UNIPROTKB|Q7KZF4 | 910 | SND1 "Staphylococcal nuclease | 0.467 | 0.484 | 0.353 | 4.5e-111 | |
| UNIPROTKB|Q863B3 | 910 | SND1 "Staphylococcal nuclease | 0.492 | 0.510 | 0.344 | 7.3e-111 | |
| UNIPROTKB|E2RH91 | 910 | SND1 "Uncharacterized protein" | 0.467 | 0.484 | 0.355 | 9.2e-111 | |
| FB|FBgn0035121 | 926 | Tudor-SN "Tudor-SN" [Drosophil | 0.471 | 0.480 | 0.290 | 2e-79 | |
| ASPGD|ASPL0000052132 | 882 | AN0242 [Emericella nidulans (t | 0.469 | 0.502 | 0.336 | 1.5e-78 |
| TAIR|locus:2159218 Tudor2 "TUDOR-SN protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1704 (604.9 bits), Expect = 2.3e-313, Sum P(2) = 2.3e-313
Identities = 333/523 (63%), Positives = 412/523 (78%)
Query: 423 GATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRD 482
GA + R++DFGS+FL SP KG+ +AVA AA P G N+AEL++SRGLG V+ HRD
Sbjct: 474 GAGD-RVMDFGSVFLPSPTKGD----TAVA---AAATP-GANIAELIISRGLGTVVRHRD 524
Query: 483 FEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRI 542
FEERSN+YD +S+K+ P +HI DLT+A KKA+DFLP LQR +I
Sbjct: 525 FEERSNHYDALLAAEARAIAGKKNIHSAKDSPALHIADLTVASAKKAKDFLPSLQRINQI 584
Query: 543 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 602
AVVEYVLSGHRFK+ IPKE+CSIAF+FSGVRCPGR E YS EA+ LMR+KI+QRDVEI
Sbjct: 585 SAVVEYVLSGHRFKLYIPKESCSIAFAFSGVRCPGRGEPYSEEAIALMRRKIMQRDVEIV 644
Query: 603 VETVDRTGTFLGSLWE--SRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQ 660
VE VDRTGTFLGS+WE S+TN LLEAGLAK+QT FG+DRIP++H+LE AE+SAK+Q
Sbjct: 645 VENVDRTGTFLGSMWEKNSKTNAGTYLLEAGLAKMQTGFGADRIPEAHILEMAERSAKNQ 704
Query: 661 KLKIWENYVEGEEVSNGAA-VEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLA 719
KLKIWENYVEGEEV NG++ VE +QKE LKVVVTE+LGGG+FYVQ VGDQKVAS+Q QLA
Sbjct: 705 KLKIWENYVEGEEVVNGSSKVETRQKETLKVVVTEVLGGGRFYVQTVGDQKVASIQNQLA 764
Query: 720 SLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGN 779
+L+L++AP+IG+FNPKKG+IVLAQFS DNSWNRAMIVN PR V+S ++FEVFYIDYGN
Sbjct: 765 ALSLKDAPIIGSFNPKKGDIVLAQFSLDNSWNRAMIVNGPRGAVQSPEEEFEVFYIDYGN 824
Query: 780 QELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFR 839
QE+VPY+ +RP+DPS+SS P LAQLC LAYIK+P E+++G +A E+L+ T S EFR
Sbjct: 825 QEIVPYSAIRPVDPSVSSAPGLAQLCRLAYIKVPGKEEDFGRDAGEYLHTVTLESGKEFR 884
Query: 840 ALVEERDSSXXXXXXXXXXXXXHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQA 899
A+VEERD+S VTL+AVD EIS+N M+QEG+AR+E+R+RW +D+QA
Sbjct: 885 AVVEERDTSGGKVKGQGTGTELVVTLIAVDDEISVNAAMLQEGIARMEKRRRWEPKDKQA 944
Query: 900 ALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGG 942
AL+ LEKFQ+EA+ +R G+W+YGDIQSDDED +P VRK G
Sbjct: 945 ALDALEKFQDEARKSRTGIWEYGDIQSDDEDNVP--VRKPGRG 985
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| ZFIN|ZDB-GENE-030131-3124 snd1 "staphylococcal nuclease domain containing 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| RGD|631340 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q66X93 Snd1 "Staphylococcal nuclease domain-containing protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1929266 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7KZF4 SND1 "Staphylococcal nuclease domain-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q863B3 SND1 "Staphylococcal nuclease domain-containing protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RH91 SND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0035121 Tudor-SN "Tudor-SN" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000052132 AN0242 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q78PY7 | SND1_MOUSE | No assigned EC number | 0.3357 | 0.8283 | 0.8593 | yes | no |
| Q7KZF4 | SND1_HUMAN | No assigned EC number | 0.3329 | 0.8294 | 0.8604 | yes | no |
| Q66X93 | SND1_RAT | No assigned EC number | 0.3357 | 0.8283 | 0.8602 | yes | no |
| Q7ZT42 | SND1_DANRE | No assigned EC number | 0.3277 | 0.8209 | 0.8639 | yes | no |
| Q5REU4 | SND1_PONAB | No assigned EC number | 0.3329 | 0.8294 | 0.8604 | yes | no |
| Q863B3 | SND1_BOVIN | No assigned EC number | 0.3329 | 0.8294 | 0.8604 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 944 | |||
| pfam00567 | 118 | pfam00567, TUDOR, Tudor domain | 1e-32 | |
| smart00318 | 137 | smart00318, SNc, Staphylococcal nuclease homologue | 5e-23 | |
| smart00318 | 137 | smart00318, SNc, Staphylococcal nuclease homologue | 6e-22 | |
| cd00175 | 129 | cd00175, SNc, Staphylococcal nuclease homologues | 3e-20 | |
| cd00175 | 129 | cd00175, SNc, Staphylococcal nuclease homologues | 1e-19 | |
| pfam00565 | 106 | pfam00565, SNase, Staphylococcal nuclease homologu | 4e-14 | |
| cd04508 | 48 | cd04508, TUDOR, Tudor domains are found in many eu | 1e-13 | |
| smart00318 | 137 | smart00318, SNc, Staphylococcal nuclease homologue | 1e-11 | |
| smart00333 | 57 | smart00333, TUDOR, Tudor domain | 7e-11 | |
| pfam00565 | 106 | pfam00565, SNase, Staphylococcal nuclease homologu | 1e-10 | |
| cd00175 | 129 | cd00175, SNc, Staphylococcal nuclease homologues | 2e-10 | |
| cd00175 | 129 | cd00175, SNc, Staphylococcal nuclease homologues | 1e-08 | |
| pfam00565 | 106 | pfam00565, SNase, Staphylococcal nuclease homologu | 1e-06 | |
| smart00318 | 137 | smart00318, SNc, Staphylococcal nuclease homologue | 2e-06 | |
| cd00175 | 129 | cd00175, SNc, Staphylococcal nuclease homologues | 4e-06 | |
| smart00318 | 137 | smart00318, SNc, Staphylococcal nuclease homologue | 2e-05 | |
| cd00175 | 129 | cd00175, SNc, Staphylococcal nuclease homologues | 6e-05 | |
| smart00318 | 137 | smart00318, SNc, Staphylococcal nuclease homologue | 2e-04 | |
| pfam00565 | 106 | pfam00565, SNase, Staphylococcal nuclease homologu | 2e-04 | |
| COG1525 | 192 | COG1525, COG1525, Micrococcal nuclease (thermonucl | 2e-04 | |
| COG1525 | 192 | COG1525, COG1525, Micrococcal nuclease (thermonucl | 6e-04 | |
| pfam00565 | 106 | pfam00565, SNase, Staphylococcal nuclease homologu | 0.001 |
| >gnl|CDD|215998 pfam00567, TUDOR, Tudor domain | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-32
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 685 KEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQ 743
+ VVVT I G+FY+Q D +K+ + ++L L + P + PK G+ +A
Sbjct: 1 GSTIDVVVTHIESPGRFYIQPKSDDKKLEKLTEELQEYYLSKPPE--SLPPKVGDGCVAA 58
Query: 744 FSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQ 803
FS D W RA I+ V + EVF+IDYGN E VP + LRP+ +S PP A
Sbjct: 59 FSEDGKWYRAKIL------VSLDDGLVEVFFIDYGNTETVPLSDLRPLPSEFASLPPQAI 112
Query: 804 LCSLAY 809
CSLA
Sbjct: 113 KCSLAG 118
|
Length = 118 |
| >gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue | Back alignment and domain information |
|---|
| >gnl|CDD|119391 cd04508, TUDOR, Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|197660 smart00333, TUDOR, Tudor domain | Back alignment and domain information |
|---|
| >gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue | Back alignment and domain information |
|---|
| >gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue | Back alignment and domain information |
|---|
| >gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue | Back alignment and domain information |
|---|
| >gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 944 | |||
| KOG2039 | 875 | consensus Transcriptional coactivator p100 [Transc | 100.0 | |
| smart00318 | 138 | SNc Staphylococcal nuclease homologues. | 99.92 | |
| cd00175 | 129 | SNc Staphylococcal nuclease homologues. SNase homo | 99.9 | |
| KOG2039 | 875 | consensus Transcriptional coactivator p100 [Transc | 99.88 | |
| PRK06518 | 177 | hypothetical protein; Provisional | 99.85 | |
| smart00318 | 138 | SNc Staphylococcal nuclease homologues. | 99.85 | |
| PF00567 | 121 | TUDOR: Tudor domain; InterPro: IPR008191 There are | 99.83 | |
| cd00175 | 129 | SNc Staphylococcal nuclease homologues. SNase homo | 99.82 | |
| PF00565 | 108 | SNase: Staphylococcal nuclease homologue; InterPro | 99.76 | |
| PRK06518 | 177 | hypothetical protein; Provisional | 99.76 | |
| COG1525 | 192 | Micrococcal nuclease (thermonuclease) homologs [DN | 99.73 | |
| COG1525 | 192 | Micrococcal nuclease (thermonuclease) homologs [DN | 99.64 | |
| PF00565 | 108 | SNase: Staphylococcal nuclease homologue; InterPro | 99.59 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 99.3 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 99.28 | |
| KOG2279 | 608 | consensus Kinase anchor protein AKAP149, contains | 99.0 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 98.5 | |
| PF06003 | 264 | SMN: Survival motor neuron protein (SMN); InterPro | 98.11 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 96.44 | |
| KOG2279 | 608 | consensus Kinase anchor protein AKAP149, contains | 96.29 | |
| PF05641 | 68 | Agenet: Agenet domain; InterPro: IPR008395 This do | 95.04 | |
| PF11717 | 55 | Tudor-knot: RNA binding activity-knot of a chromod | 92.92 | |
| KOG4327 | 218 | consensus mRNA splicing protein SMN (survival moto | 91.63 | |
| PF15057 | 124 | DUF4537: Domain of unknown function (DUF4537) | 91.28 | |
| PF15057 | 124 | DUF4537: Domain of unknown function (DUF4537) | 90.2 | |
| KOG3026 | 262 | consensus Splicing factor SPF30 [RNA processing an | 89.19 | |
| KOG3038 | 264 | consensus Histone acetyltransferase SAGA associate | 85.49 |
| >KOG2039 consensus Transcriptional coactivator p100 [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-86 Score=806.87 Aligned_cols=789 Identities=43% Similarity=0.698 Sum_probs=683.9
Q ss_pred CceEEEEEEEeecCCCceEEEEEeCCccHHHHHHhccceeeeeccCCCCCCchHHHHHHHHHHHHHHhCCCcccCCCccc
Q 002274 1 MQEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAA 80 (944)
Q Consensus 1 ~k~V~f~v~y~~~~~~r~~g~v~~~~~nv~~~lv~~G~akv~~~~~~~~~~~~~~~~L~~~e~~Ak~~~~G~w~~~~~~~ 80 (944)
+|+|.|+.+|..+..+|+||.|+++++|+++.|+.+||+++++.+. ..++|...|...|.+|++.++|+|++.
T Consensus 69 ~k~~~v~~~~~~~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~---- 141 (875)
T KOG2039|consen 69 GKEVAVTRDQMSANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL---- 141 (875)
T ss_pred cceeeeEEeeeccccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhcccccccc----
Confidence 6899999999444458999999999999999999999999988762 227899999999999999999999933
Q ss_pred ccccccCCCCcCCCCCccchHHHHhhhcCCceeEEEEEEecCC-EEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCc
Q 002274 81 EASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTD 159 (944)
Q Consensus 81 ~~~~r~~~~~~~~~~~~~~~~~~~~~~k~~~~~a~Ve~V~DGd-t~~v~l~~~~~~~~v~laGI~~Pe~~~~~~~~~~~~ 159 (944)
....|++.|+. .++..|+..+.++++.|+|++|++|+ +.||.+.|.++.++++|+|+.||.+..+.
T Consensus 142 ~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s------- 208 (875)
T KOG2039|consen 142 DHFIRNLKDSA------LNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS------- 208 (875)
T ss_pred ccceeeccccc------cccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-------
Confidence 34578998874 57899999999999999999999999 68888888888999999999999987532
Q ss_pred ccccCCCccccccccchhhHHHhhhhcccCCCCCCCchhHHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEecCCCC
Q 002274 160 TEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGET 239 (944)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~eAk~f~e~~ll~r~V~v~~~~~D~~g~~~~~V~~~~g~~ 239 (944)
+|. ....+||+.+|+.|++.++++|.|.|.+++...+..++|+|.+++|+
T Consensus 209 ----~~~-------------------------~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~- 258 (875)
T KOG2039|consen 209 ----DGS-------------------------PSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN- 258 (875)
T ss_pred ----CCC-------------------------CCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc-
Confidence 120 12358999999999999999999999999998887889999999995
Q ss_pred HHHHHHHHHHcCcEEEeecccccchHHHHHHHHHHHHHHHHhcccc-ccccCCCCCCccccccceeEEEEEEEEeCCEEE
Q 002274 240 AKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCII 318 (944)
Q Consensus 240 ~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~aE~~Ak~~r~gl-W~~~~~~~~~~~~~~~~~~~~~V~~V~~gD~i~ 318 (944)
|++.|+.+|++++++|+...+..++...++.+|..++..+.++ |++|.++.++++.+..+.|+++|++++.+||+.
T Consensus 259 ---i~~~~~~~~~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~ 335 (875)
T KOG2039|consen 259 ---IALELLSEGLAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVL 335 (875)
T ss_pred ---eeeehhccchHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceE
Confidence 9999999999999999999998888878999999999999999 999999999888878889999999999999999
Q ss_pred EecCCCCCCCCCcceEEEEeeccCCCCCCCCCCCC--CchhHHHHHHHHHhhcCCcEEEEEEEEEeecccccccccccCC
Q 002274 319 VADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAK 396 (944)
Q Consensus 319 v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~~~~~--~~~~~~ea~e~Lr~~~~Gk~v~v~~~y~~~~~~~~~~~~~~~~ 396 (944)
+..++ |+ +.++.+++|+.|+.+.+.+..+ ..||+.+|++|||++++|++|.+.++|.|+..
T Consensus 336 ~~~~s---g~---~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~----------- 398 (875)
T KOG2039|consen 336 VALDS---GS---ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRR----------- 398 (875)
T ss_pred EecCC---CC---ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeecccccc-----------
Confidence 99976 33 7899999999999444333333 48999999999999999999999999987631
Q ss_pred CCCCCCCCCCCcCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCCCCccHHHHHHhcCcEE
Q 002274 397 GPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGN 476 (944)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~lv~~G~a~ 476 (944)
+. +++ ..+.+.+ ..|.|+++.++.+|++.
T Consensus 399 -----~~---------------------~~~---~~c~~~~----------------------~~~~~~a~~~~~kg~~~ 427 (875)
T KOG2039|consen 399 -----EN---------------------VPT---KVCALPL----------------------GGGKNVAELLVKKGLAT 427 (875)
T ss_pred -----cc---------------------ccc---ccccccC----------------------CCcceeeEEEecccchh
Confidence 00 000 1111111 24799999999999999
Q ss_pred EEEec-CccccchhHHHHHHHHHHHHHcCCCCCCCCCCCcceeeeCCccccccccccchhhhcCCcccEEEEEEecCCEE
Q 002274 477 VINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRF 555 (944)
Q Consensus 477 v~~~~-~~~~~s~~~~~l~~ae~~A~~~~~G~~~~~~~~~~~i~d~~~~~~~~ak~fl~~l~~~~~~~~vVe~V~~G~~~ 555 (944)
+.+|| ++.+++.+||.|+.+|..|.+.++|+|+.+..+.+++.+++..-..+++.|++++++...++.+|+++++|+++
T Consensus 428 ~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~ 507 (875)
T KOG2039|consen 428 VVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRL 507 (875)
T ss_pred hhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCcceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccc
Confidence 99999 67889999999999999999999999999887677788887533444559999999999999999999999999
Q ss_pred EEeecCCceeEEEEEeccCCCC-------CCCcchHHHHHHHHHHhcCceEEEEEEEECCCCcEEEEEEeC-CccHHHHH
Q 002274 556 KVLIPKETCSIAFSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVIL 627 (944)
Q Consensus 556 kv~ip~e~~~I~~~LaGI~~P~-------~~e~w~~EA~~f~k~~llqR~V~v~v~~~Dk~G~~ig~L~~~-~~nIa~~L 627 (944)
++++|++.+.++|.++|++||+ .+++|+++|..|++.+++++++++++..+++.|+|+|.++.+ +.+++..+
T Consensus 508 ~~~~pk~~~~~~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~ 587 (875)
T KOG2039|consen 508 RLYIPKETCYCQFALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKL 587 (875)
T ss_pred eeccCCcceeEEEeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhh
Confidence 9999999999999999999997 589999999999999999999999999999999999999987 89999999
Q ss_pred HHcCCEEEeeccCCCCCCchHHHHHHHHHHH-hhcccccccccccccccC--CccccCCCCcEEEEEEEEEecCCeEEEE
Q 002274 628 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVSN--GAAVEGKQKEVLKVVVTEILGGGKFYVQ 704 (944)
Q Consensus 628 v~~GLA~v~~~~s~~~~~~~~~L~~AE~~AK-~~k~giW~~~~~~~~~~~--~~~~~~~~~~~~~V~VT~V~sp~~FyVQ 704 (944)
+++||+..+ |..+.+.....|..++..|+ ..+.++|.++.++..... ...+......+..++++.+..++.||+|
T Consensus 588 ~e~~L~~~~--~~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q 665 (875)
T KOG2039|consen 588 LEQGLAPEH--FAAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQ 665 (875)
T ss_pred hhhhcCccc--hhhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceee
Confidence 999999997 77666666777888999999 999999999877633211 1111123456778888888877999999
Q ss_pred EcCc-hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeee
Q 002274 705 QVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELV 783 (944)
Q Consensus 705 ~~~~-~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V 783 (944)
..+. ..+++||..|+.......|..+++.|+.|++|+|+|+.|++||||.|+++. ....++||||||||.+++
T Consensus 666 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~------~~~~~~V~yiDygn~E~l 739 (875)
T KOG2039|consen 666 SISDGSKITKIMTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVL------DPESMEVFYIDYGNIETL 739 (875)
T ss_pred cccchHHHHHHHHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeec------cCcceeEEEEecCccccc
Confidence 9984 789999999999888777777889999999999999999999999999984 228999999999999999
Q ss_pred cCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCCEEEEEEEEEeCCCCcccCCCCccEEEE
Q 002274 784 PYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHV 863 (944)
Q Consensus 784 ~~s~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~gk~l~a~V~~~~~~g~~~~~~~~~~~~~V 863 (944)
|+.+|++||+.|..+|++|.+|+|++|+++. ..+..++++.+|.+ ...++.+++.+.... .++.+++
T Consensus 740 p~~~l~~lp~~~~~~p~~a~~~~L~~ik~~~-~~~~~e~~i~~l~~--~~~~~~~~~~~~~~i----------~~~~~~~ 806 (875)
T KOG2039|consen 740 PFVRLKPLPPHFSLLPPVAQECGLAGIKEPQ-LEDLKEEAIRYLDE--DTLGHKCQVNVELRV----------VGNSLLV 806 (875)
T ss_pred ccccccCCChHHhcCchHHhhhhhhcccCCc-ccchHHHHHHHHHH--Hhhcccceeeeeeee----------eccceeE
Confidence 9999999999999999999999999999985 57889999999999 677887777744332 1456889
Q ss_pred EEEecCCCCcHHHHHHH-cCCeeEecccccCchhhHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCc
Q 002274 864 TLVAVDAEISINTLMVQ-EGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLP 933 (944)
Q Consensus 864 tL~d~~~~~sIn~~LV~-~GlA~~~~~~~~~~~~~~~~~~~l~~aqe~Ak~~r~giW~yGD~~~dde~~~~ 933 (944)
+|+...+..++++.|+. .|+.....++. .+.++...+.|..+|+.|++.|+++|.|||++.+|+++++
T Consensus 807 ~l~~~~~~~d~~~~l~~~~~l~~~~~~~~--~~~~q~~~~~~~~~qq~a~~~~~~~~~y~~~~~~~~~~~~ 875 (875)
T KOG2039|consen 807 TLLYTVEELDVGEELVAVEGLSLVEQRKT--EEVLQALLDQLEKAQQEARKEHLNIWFYGDVTGKDADEVV 875 (875)
T ss_pred EEeeecCcCChhHhhhhhccccccccccc--chHHHHHhhHhhhchhhHHhhhhhhhhhcCcccCcccccC
Confidence 99887789999999999 99999887763 2678999999999999999999999999999999999873
|
|
| >smart00318 SNc Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >cd00175 SNc Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >KOG2039 consensus Transcriptional coactivator p100 [Transcription] | Back alignment and domain information |
|---|
| >PRK06518 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >smart00318 SNc Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] | Back alignment and domain information |
|---|
| >cd00175 SNc Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
| >PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes | Back alignment and domain information |
|---|
| >PRK06518 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] | Back alignment and domain information |
|---|
| >PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F | Back alignment and domain information |
|---|
| >KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF15057 DUF4537: Domain of unknown function (DUF4537) | Back alignment and domain information |
|---|
| >PF15057 DUF4537: Domain of unknown function (DUF4537) | Back alignment and domain information |
|---|
| >KOG3026 consensus Splicing factor SPF30 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 944 | ||||
| 3bdl_A | 570 | Crystal Structure Of A Truncated Human Tudor-Sn Len | 2e-59 | ||
| 3omg_A | 261 | Structure Of Human Snd1 Extended Tudor Domain In Co | 6e-24 | ||
| 2hqx_A | 246 | Crystal Structure Of Human P100 Tudor Domain Conser | 7e-22 | ||
| 2wac_A | 218 | Extended Tudor Domain Of Drosophila Melanogaster Tu | 2e-21 | ||
| 2o4x_A | 217 | Crystal Structure Of Human P100 Tudor Domain Length | 3e-18 | ||
| 2e6n_A | 104 | Solution Structure Of The Tudor Domain Of Staphyloc | 4e-09 | ||
| 2o4x_B | 91 | Crystal Structure Of Human P100 Tudor Domain Length | 6e-09 | ||
| 4b9w_A | 201 | Structure Of Extended Tudor Domain Td3 From Mouse T | 6e-06 | ||
| 4b9x_A | 226 | Structure Of Extended Tudor Domain Td3 From Mouse T | 7e-06 | ||
| 4j1m_A | 143 | Crystal Structure Of Staphylococcal Nuclease Varian | 4e-04 | ||
| 4iun_A | 143 | Crystal Structure Of Staphylococcal Nuclease Varian | 4e-04 | ||
| 3hej_A | 143 | Crystal Structure Of Staphylococcal Nuclease Varian | 5e-04 | ||
| 3mhb_A | 143 | Crystal Structure Of Staphylococcal Nuclease Varian | 6e-04 |
| >pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn Length = 570 | Back alignment and structure |
|
| >pdb|3OMG|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex With The Symmetrically Dimethylated Arginine Piwil1 Peptide R14me2s Length = 261 | Back alignment and structure |
| >pdb|2HQX|A Chain A, Crystal Structure Of Human P100 Tudor Domain Conserved Region Length = 246 | Back alignment and structure |
| >pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn ( P100) Length = 218 | Back alignment and structure |
| >pdb|2O4X|A Chain A, Crystal Structure Of Human P100 Tudor Domain Length = 217 | Back alignment and structure |
| >pdb|2E6N|A Chain A, Solution Structure Of The Tudor Domain Of Staphylococcal Nuclease Domain-Containing Protein 1 Length = 104 | Back alignment and structure |
| >pdb|2O4X|B Chain B, Crystal Structure Of Human P100 Tudor Domain Length = 91 | Back alignment and structure |
| >pdb|4B9W|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In Complex With Mili Peptide Containing Dimethylarginine 45. Length = 201 | Back alignment and structure |
| >pdb|4B9X|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 Length = 226 | Back alignment and structure |
| >pdb|4J1M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R105e At Cryogenic Temperature Length = 143 | Back alignment and structure |
| >pdb|4IUN|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R126e At Cryogenic Temperature Length = 143 | Back alignment and structure |
| >pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+p Cryogenic Temperature Length = 143 | Back alignment and structure |
| >pdb|3MHB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs L38a At Cryogenic Temperature Length = 143 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 383 bits (983), Expect = e-122
Identities = 203/653 (31%), Positives = 310/653 (47%), Gaps = 117/653 (17%)
Query: 286 WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKI 345
+ VP S+ D+ F KV++V++ D I+V +S + ++LSSIR P++
Sbjct: 11 SSGLVPRGSHM----DKQFVAKVMQVLNADAIVVKLNSGD------YKTIHLSSIRPPRL 60
Query: 346 GNPRKDEKPA--------AYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKG 397
+K Y EAREFLR +LIG++VNV ++Y R
Sbjct: 61 EGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPA------------- 107
Query: 398 PAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAA 457
E+V A R ++ +
Sbjct: 108 ------------------SPATETVPAFSER--TCATVTI-------------------- 127
Query: 458 GQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVM 516
G+N+AE +VS+GL VI +R D ++RS++YD LLAAEARA KG +S KE P+
Sbjct: 128 ---GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIH 184
Query: 517 HIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP 576
+ D +KA+ FLPFLQR+ R AVVEYV SG R K+ +PKETC I F +G+ CP
Sbjct: 185 RVAD-ISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECP 243
Query: 577 ----------GRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVI 626
E +S EA L ++ +LQR+VE+EVE++D+ G F+G L N++V+
Sbjct: 244 RGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVL 303
Query: 627 LLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY--VEGEEVSNGAAVEGKQ 684
L+E L+K+ F ++R L AE++AK +K K+W +Y EEV + +
Sbjct: 304 LVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERS 361
Query: 685 KEVLKVVVTEILGGGKFYVQQVGDQ-KVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQ 743
V VTEI FYVQ V ++ + + + + PV G++ P++GE +A+
Sbjct: 362 ASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAK 421
Query: 744 FSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPL 801
F D W RA + K VFYIDYGN+E++P +L + P+ S+ P
Sbjct: 422 FV-DGEWYRARVEKVES------PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQ 474
Query: 802 AQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLL 861
A + A+I++P +D+ +A + + N+ + VE
Sbjct: 475 ATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNT--QCLLNVEHLS-----------AGCP 520
Query: 862 HVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 914
HVTL D++ + +V+EGL VE RK + Q + QE AK+A
Sbjct: 521 HVTLQFADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSA 570
|
| >3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
| >3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
| >3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
| >2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 | Back alignment and structure |
|---|
| >2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 | Back alignment and structure |
|---|
| >2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 | Back alignment and structure |
|---|
| >2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 | Back alignment and structure |
|---|
| >2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 | Back alignment and structure |
|---|
| >3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Length = 169 | Back alignment and structure |
|---|
| >2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 110 | Back alignment and structure |
|---|
| >3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
| >3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Length = 78 | Back alignment and structure |
|---|
| >3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Length = 54 | Back alignment and structure |
|---|
| >4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Length = 64 | Back alignment and structure |
|---|
| >1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Length = 59 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 88 | Back alignment and structure |
|---|
| >4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 | Back alignment and structure |
|---|
| >4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 | Back alignment and structure |
|---|
| >4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 | Back alignment and structure |
|---|
| >4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 | Back alignment and structure |
|---|
| >2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 944 | |||
| 3bdl_A | 570 | Staphylococcal nuclease domain-containing protein | 100.0 | |
| 3bdl_A | 570 | Staphylococcal nuclease domain-containing protein | 100.0 | |
| 2hqx_A | 246 | P100 CO-activator tudor domain; human P100 tudor d | 100.0 | |
| 2wac_A | 218 | CG7008-PA; unknown function, tudor, beta-barrel, n | 100.0 | |
| 4b9w_A | 201 | TDRD1, tudor domain-containing protein 1; replicat | 100.0 | |
| 4b9x_A | 226 | TDRD1, tudor domain-containing protein 1; replicat | 100.0 | |
| 3ntk_A | 169 | Maternal protein tudor; tudor domain, OB-fold, GER | 99.97 | |
| 4eqp_A | 143 | Thermonuclease; staphylococcal nuclease, hyperstab | 99.91 | |
| 2diq_A | 110 | Tudor and KH domain-containing protein; tudor doma | 99.88 | |
| 3fdr_A | 94 | Tudor and KH domain-containing protein; TDRD2, str | 99.87 | |
| 4eqp_A | 143 | Thermonuclease; staphylococcal nuclease, hyperstab | 99.85 | |
| 2eqk_A | 85 | Tudor domain-containing protein 4; structural geno | 99.72 | |
| 2d9t_A | 78 | Tudor domain-containing protein 3; structural geno | 99.59 | |
| 1mhn_A | 59 | SurviVal motor neuron protein; SMN, SMA, spinal mu | 99.58 | |
| 4a4f_A | 64 | SurviVal of motor neuron-related-splicing factor; | 99.58 | |
| 3s6w_A | 54 | Tudor domain-containing protein 3; methylated argi | 99.57 | |
| 3pnw_C | 77 | Tudor domain-containing protein 3; FAB, structural | 99.56 | |
| 1g5v_A | 88 | SurviVal motor neuron protein 1; mRNA processing, | 99.55 | |
| 2wac_A | 218 | CG7008-PA; unknown function, tudor, beta-barrel, n | 99.45 | |
| 2equ_A | 74 | PHD finger protein 20-like 1; tudor domain, struct | 99.21 | |
| 2ldm_A | 81 | Uncharacterized protein; PHF20, tudor domain, epig | 98.63 | |
| 2hqx_A | 246 | P100 CO-activator tudor domain; human P100 tudor d | 99.04 | |
| 3p8d_A | 67 | Medulloblastoma antigen MU-MB-50.72; tudor domain, | 98.31 | |
| 3qii_A | 85 | PHD finger protein 20; tudor domain, structural ge | 98.29 | |
| 4b9x_A | 226 | TDRD1, tudor domain-containing protein 1; replicat | 97.82 | |
| 4b9w_A | 201 | TDRD1, tudor domain-containing protein 1; replicat | 97.76 | |
| 2dig_A | 68 | Lamin-B receptor; tudor domain, integral nuclear e | 97.38 | |
| 2l8d_A | 66 | Lamin-B receptor; DNA binding protein; NMR {Gallus | 97.18 | |
| 3ntk_A | 169 | Maternal protein tudor; tudor domain, OB-fold, GER | 96.86 | |
| 3h8z_A | 128 | FragIle X mental retardation syndrome-related Pro; | 95.18 | |
| 2eqj_A | 66 | Metal-response element-binding transcription facto | 93.79 | |
| 4hcz_A | 58 | PHD finger protein 1; protein-peptide complex, tud | 91.31 | |
| 2bud_A | 92 | Males-absent on the first protein; transferase, MO | 91.25 | |
| 2e5p_A | 68 | Protein PHF1, PHD finger protein 1; tudor domain, | 91.25 | |
| 2ro0_A | 92 | Histone acetyltransferase ESA1; HAT, chromodomain, | 90.89 | |
| 2lcc_A | 76 | AT-rich interactive domain-containing protein 4A; | 90.88 | |
| 2f5k_A | 102 | MORF-related gene 15 isoform 1; beta barrel, gene | 90.61 | |
| 2eko_A | 87 | Histone acetyltransferase htatip; chromo domain, h | 90.45 | |
| 2e5q_A | 63 | PHD finger protein 19; tudor domain, isoform B, st | 89.82 | |
| 1ssf_A | 156 | Transformation related protein 53 binding protein | 89.47 | |
| 1wgs_A | 133 | MYST histone acetyltransferase 1; tudor domain, MY | 88.56 | |
| 2rnz_A | 94 | Histone acetyltransferase ESA1; HAT, chromodomain, | 88.29 | |
| 2g3r_A | 123 | Tumor suppressor P53-binding protein 1; tandem tud | 82.61 | |
| 2m0o_A | 79 | PHD finger protein 1; tudor domain, H3K36ME3 bindi | 80.62 | |
| 2lrq_A | 85 | Protein MRG15, NUA4 complex subunit EAF3 homolog; | 80.95 |
| >3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-88 Score=807.03 Aligned_cols=524 Identities=37% Similarity=0.589 Sum_probs=449.3
Q ss_pred cceeEEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCC-CCC-------CCchhHHHHHHHHHhhcCCc
Q 002274 301 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPR-KDE-------KPAAYAREAREFLRTRLIGR 372 (944)
Q Consensus 301 ~~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~-~~~-------~~~~~~~ea~e~Lr~~~~Gk 372 (944)
.+.++|+|++|+|||||+|...+ +.+++|||++|+||++.... ++. +++|||++||||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CcEEEEEEEEEccCCEEEEECCC------CCEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCC
Confidence 46899999999999999998533 24899999999999985321 111 47899999999999999999
Q ss_pred EEEEEEEEEeecccccccccccCCCCCCCCCCCCCcCccccCCCCCCcccCccccce-eeEEEEEecCCCCCCCCCchhh
Q 002274 373 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV 451 (944)
Q Consensus 373 ~v~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 451 (944)
+|+|.++|.++.... + +..+.++ |.+|+|++
T Consensus 96 ~V~~~~~~~~~~~~~--------------~--------------------~~~D~yg~R~la~v~~-------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA--------------T--------------------ETVPAFSERTCATVTI-------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC--------------S--------------------SCSSSSCCEEEEEEEE--------------
T ss_pred EEEEEEEeecccccc--------------c--------------------cccCCCCceEEEEEcc--------------
Confidence 999999998763210 0 1123356 99999998
Q ss_pred hhcccCCCCCCccHHHHHHhcCcEEEEEec-CccccchhHHHHHHHHHHHHHcCCCCCCCCCCCcceeeeCCcccccccc
Q 002274 452 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR 530 (944)
Q Consensus 452 ~~~~~~~~~~~~nv~~~lv~~G~a~v~~~~-~~~~~s~~~~~l~~ae~~A~~~~~G~~~~~~~~~~~i~d~~~~~~~~ak 530 (944)
+|.|||++||++|||+|++|| ..++++.+|+.|++||++|+++++|||+.+++++.+++|++. +..+++
T Consensus 128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~-~~~~~~ 197 (570)
T 3bdl_A 128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISG-DTQKAK 197 (570)
T ss_dssp ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTT-CHHHHH
T ss_pred ---------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecCC-chHHHH
Confidence 578999999999999999987 555678899999999999999999999998878888999975 678999
Q ss_pred ccchhhhcCCcccEEEEEEecCCEEEEeecCCceeEEEEEeccCCCC----------CCCcchHHHHHHHHHHhcCceEE
Q 002274 531 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVE 600 (944)
Q Consensus 531 ~fl~~l~~~~~~~~vVe~V~~G~~~kv~ip~e~~~I~~~LaGI~~P~----------~~e~w~~EA~~f~k~~llqR~V~ 600 (944)
+|+++++++++++|+|++|.|||||+|++|++++.++++|+||+||+ ..+||+.||+.|++++|++|+|+
T Consensus 198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~ 277 (570)
T 3bdl_A 198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE 277 (570)
T ss_dssp HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEE
Confidence 99999999999999999999999999999989999999999999996 36899999999999999999999
Q ss_pred EEEEEECCCCcEEEEEEeCCccHHHHHHHcCCEEEeeccCCCCCCchHHHHHHHHHHHhhcccccccccccccccCC--c
Q 002274 601 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNG--A 678 (944)
Q Consensus 601 v~v~~~Dk~G~~ig~L~~~~~nIa~~Lv~~GLA~v~~~~s~~~~~~~~~L~~AE~~AK~~k~giW~~~~~~~~~~~~--~ 678 (944)
+++.+.|++|+++|+||+++.||+..||++|||+++ ++....++...|..||+.||++++|||+.+.|...+... .
T Consensus 278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~ 355 (570)
T 3bdl_A 278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL 355 (570)
T ss_dssp EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred EEEEeEcCCCCEEEEEEECCEEHHHHHHHcCCcEEE--ecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhccccc
Confidence 999999999999999999999999999999999996 444455667889999999999999999988765321111 1
Q ss_pred cccCCCCcEEEEEEEEEecCCeEEEEEcCc-hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEe
Q 002274 679 AVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 757 (944)
Q Consensus 679 ~~~~~~~~~~~V~VT~V~sp~~FyVQ~~~~-~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~ 757 (944)
....+..++++|+||+|.+|++||||..+. ..|+.||++|+.++.+..+.+.++.|++|++|+|+|+ |+.||||+|++
T Consensus 356 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~ 434 (570)
T 3bdl_A 356 EEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEK 434 (570)
T ss_dssp CCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEE
T ss_pred ccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEE
Confidence 111245688999999999999999999984 6699999999998876656555678999999999998 99999999999
Q ss_pred eccCccccCCCEEEEEEeecCCeeeecCCCcccCCccccCc--ccccceeeecceecCCCCCCCcHHHHHHHhhccccCC
Q 002274 758 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSS 835 (944)
Q Consensus 758 v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~l--P~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~g 835 (944)
+. ..+.+.|+||||||++.|+.++||+||++|+.+ |+||++|+|++|+||. +.+|+++|+++|++ ++.|
T Consensus 435 v~------~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~-~~~w~~ea~~~f~~--lv~~ 505 (570)
T 3bdl_A 435 VE------SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVR--DIQN 505 (570)
T ss_dssp EE------ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS-SHHHHHHHHHHHHH--HHTT
T ss_pred Ec------CCCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCC-CCCCcHHHHHHHHH--HhCC
Confidence 95 468999999999999999999999999999876 9999999999999875 56899999999999 7789
Q ss_pred CEEEEEEEEEeCCCCcccCCCCccEEEEEEEecCCCCcHHHHHHHcCCeeEecccccCchhhHHHHHHHHHHHHHHHhh
Q 002274 836 NEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 914 (944)
Q Consensus 836 k~l~a~V~~~~~~g~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aqe~Ak~~ 914 (944)
+.|.++|.+... +.++|+|+++++..+||+.||++|||..++++. +.+++++++|+++|+.||++
T Consensus 506 k~l~~~V~~~~~-----------~~~~V~L~~~~~~~sIn~~Lv~~G~A~~~~~~~---~~~~~~~~~l~~~q~~Ak~~ 570 (570)
T 3bdl_A 506 TQCLLNVEHLSA-----------GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSA 570 (570)
T ss_dssp EEEEEEEEECCS-----------SSCEEEEEETTTCCBHHHHHHHTTSSEECCCCS---GGGHHHHHHHHHHHHTC---
T ss_pred CEEEEEEEEEeC-----------CcEEEEEEECCCCccHHHHHHHCCCeEcchhhh---hhHHHHHHHHHHHHHHHhcC
Confidence 999999998762 357899999877899999999999999996554 56799999999999999974
|
| >3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B | Back alignment and structure |
|---|
| >2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} | Back alignment and structure |
|---|
| >4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} | Back alignment and structure |
|---|
| >3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* | Back alignment and structure |
|---|
| >4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... | Back alignment and structure |
|---|
| >2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... | Back alignment and structure |
|---|
| >2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* | Back alignment and structure |
|---|
| >4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* | Back alignment and structure |
|---|
| >3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* | Back alignment and structure |
|---|
| >3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
| >1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B | Back alignment and structure |
|---|
| >3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} | Back alignment and structure |
|---|
| >4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} | Back alignment and structure |
|---|
| >2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} | Back alignment and structure |
|---|
| >3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* | Back alignment and structure |
|---|
| >3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* | Back alignment and structure |
|---|
| >2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} | Back alignment and structure |
|---|
| >4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3 | Back alignment and structure |
|---|
| >2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A | Back alignment and structure |
|---|
| >2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 | Back alignment and structure |
|---|
| >1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3 | Back alignment and structure |
|---|
| >2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A | Back alignment and structure |
|---|
| >2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 944 | ||||
| d2diqa1 | 97 | b.34.9.1 (A:8-104) Tudor and KH domain-containing | 2e-20 | |
| d2hqxa1 | 90 | b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human ( | 2e-18 | |
| d2d9ta1 | 60 | b.34.9.1 (A:8-67) Tudor domain-containing protein | 6e-17 | |
| d1mhna_ | 59 | b.34.9.1 (A:) Survival motor neuron protein 1, smn | 8e-14 | |
| d1snoa_ | 136 | b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ | 9e-10 | |
| d1snoa_ | 136 | b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ | 5e-05 | |
| d1snoa_ | 136 | b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ | 0.003 | |
| d1snoa_ | 136 | b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ | 0.003 |
| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Tudor and KH domain-containing protein TDRKH species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.6 bits (209), Expect = 2e-20
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 790
G+IV A + SW RA ++ N +++++D+G+ P LR
Sbjct: 23 DLTVHVGDIVAAPLPTNGSWYRARVLGTLE------NGNLDLYFVDFGDNGDCPLKDLRA 76
Query: 791 IDPSLSSTPPLAQLCSLAYI 810
+ S P A CSLA I
Sbjct: 77 LRSDFLSLPFQAIECSLARI 96
|
| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60 | Back information, alignment and structure |
|---|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59 | Back information, alignment and structure |
|---|
| >d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 | Back information, alignment and structure |
|---|
| >d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 | Back information, alignment and structure |
|---|
| >d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 | Back information, alignment and structure |
|---|
| >d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 944 | |||
| d1snoa_ | 136 | Staphylococcal nuclease {Staphylococcus aureus [Ta | 99.9 | |
| d1snoa_ | 136 | Staphylococcal nuclease {Staphylococcus aureus [Ta | 99.86 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 99.85 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 99.81 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 99.58 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 99.57 | |
| d1wgsa_ | 133 | Probable histone acetyltransferase MYST1 {Mouse (M | 92.2 | |
| d2buda1 | 88 | Putative histone acetyltransferase MOF {Fruit fly | 92.16 | |
| d2qqra2 | 56 | Jumonji domain-containing protein 2A {Human (Homo | 88.41 | |
| d2qqra1 | 59 | Jumonji domain-containing protein 2A {Human (Homo | 84.31 | |
| d2diga1 | 55 | Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 | 80.92 |
| >d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Staphylococcal nuclease family: Staphylococcal nuclease domain: Staphylococcal nuclease species: Staphylococcus aureus [TaxId: 1280]
Probab=99.90 E-value=1.1e-23 Score=203.06 Aligned_cols=130 Identities=22% Similarity=0.326 Sum_probs=107.3
Q ss_pred CceeEEEEEEecCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccC
Q 002274 110 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 189 (944)
Q Consensus 110 ~~~~a~Ve~V~DGdt~~v~l~~~~~~~~v~laGI~~Pe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 189 (944)
+.-+|+|.+|+|||||+|.. +++.++|||+||||||++++.
T Consensus 3 ~~~~a~V~~V~DGDT~~v~~--~~~~~~vRL~GIdaPE~~~~~------------------------------------- 43 (136)
T d1snoa_ 3 HKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPETKHPK------------------------------------- 43 (136)
T ss_dssp CEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCSSBTT-------------------------------------
T ss_pred cccceEEEEEEcCCEEEEEe--CCcEEEEEEEEEcccccccCC-------------------------------------
Confidence 34579999999999999974 467889999999999986421
Q ss_pred CCCCCCchhHHHHHHHHHHHhc-CCeEEEEEe---eccCCCcEEEEEEecCCCCHHHHHHHHHHcCcEEEeecccccchH
Q 002274 190 GQQSTDEPFALDAKYFTEMRVL-NREVRIVLE---GVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEE 265 (944)
Q Consensus 190 ~~~~~~~p~g~eAk~f~e~~ll-~r~V~v~~~---~~D~~g~~~~~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~ 265 (944)
.+.+|||.+|+.|++.+|. ++.|.|.+. +.|+|||++|+|+. +|.+ ||++||++|||+++........
T Consensus 44 ---~~~~~~g~eA~~~l~~ll~~~~~v~~~~~~~~~~D~~gR~la~v~~-~g~~---l~~~Lv~~G~A~~~~~~~~~~~- 115 (136)
T d1snoa_ 44 ---KGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYA-DGKM---VNEALVRQGLAKVAYVYKPNNT- 115 (136)
T ss_dssp ---TBSCTTHHHHHHHHHHHHHTCSCEEEEECSSCSBCTTSCEEEEEEE-TTEE---HHHHHHHTTSCEECCCBTTBCT-
T ss_pred ---cchhhhHHHHHHHHHHHhhcCceeEEEEeccccCCccccceeEEEE-ecch---hHHHHHHCCCEEEeeecCCChh-
Confidence 3368999999999999997 589999884 47999999999987 4544 9999999999998754332222
Q ss_pred HHHHHHHHHHHHHHHhcccccc
Q 002274 266 DAKRRLKAADLQAKKTRLRMWT 287 (944)
Q Consensus 266 ~~~~~l~~aE~~Ak~~r~glW~ 287 (944)
+...|++||++||++++|||+
T Consensus 116 -~~~~l~~ae~~Ak~~~~GlWs 136 (136)
T d1snoa_ 116 -HEQLLRKSEAQAKKEKLNIWS 136 (136)
T ss_dssp -THHHHHHHHHHHHHTTCGGGC
T ss_pred -HHHHHHHHHHHHHHcCCCCCC
Confidence 234799999999999999996
|
| >d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|