Citrus Sinensis ID: 002290

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-
MNFSIFTNTSPMALSSTLRFSSSFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSRTPILASKDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESGVSEMLQ
ccccccccccccccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccECcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccHHHccccccHHccccccccccHHHHHHHHHHHHHcccccHHHHHccccccccccccEEccHHHHHHHHHccccEEEEEEEEEEEEEcccccccEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccHHHHHHHHccccccccccccEEEEEEccccccccHHHHHHHHHccccEEEEEccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccEEEEccccccEEEEEcccEEEEEEccccccccccccccccHHccccccccEEEEEEEccccccccEEEEEEcccEEEEccccccccccccccEEEEcccccEEEEEEEEccccEEEEEEccccEEEccccccccccccccccccEEcccccEEEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEEccccccEEEEEEEEEEcccccccccEEEEEcccEEEEEEcccccccccccccEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccc
**FS***NTSPMALSSTLRFSSSFFLFHNHCRHARFLSSPR*****************************************RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS****KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV***************************
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MNFSIFTNTSPMALSSTLRFSSSFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSRTPILASKDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESGVSEMLQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner.confidentQ7XZF7
Probable DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner.confidentQ9CAF6
DNA gyrase subunit A, chloroplastic/mitochondrial Seems to play a critical role in chloroplast nucleoid partitioning by regulating DNA topology. DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner.probableQ5YLB5

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
5.-.-.-Isomerases.probable
5.99.-.-Other isomerases.probable
5.99.1.-Sole sub-subclass for isomerases that do not belong in the other subclasses.probable
5.99.1.3DNA topoisomerase (ATP-hydrolyzing).probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1ZVU, chain A
Confidence level:very confident
Coverage over the Query: 107-133,144-599,623-785,807-837
View the alignment between query and template
View the model in PyMOL
Template: 2XKJ, chain E
Confidence level:very confident
Coverage over the Query: 83-573
View the alignment between query and template
View the model in PyMOL
Template: 3L6V, chain A
Confidence level:very confident
Coverage over the Query: 576-785,807-916
View the alignment between query and template
View the model in PyMOL