Citrus Sinensis ID: 002290
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 941 | 2.2.26 [Sep-21-2011] | |||||||
| Q5YLB5 | 935 | DNA gyrase subunit A, chl | N/A | no | 0.958 | 0.964 | 0.761 | 0.0 | |
| Q9CAF6 | 950 | Probable DNA gyrase subun | yes | no | 0.939 | 0.930 | 0.764 | 0.0 | |
| Q7XZF7 | 939 | Probable DNA gyrase subun | yes | no | 0.878 | 0.880 | 0.739 | 0.0 | |
| Q55738 | 860 | DNA gyrase subunit A OS=S | N/A | no | 0.859 | 0.940 | 0.502 | 0.0 | |
| P94605 | 830 | DNA gyrase subunit A OS=C | yes | no | 0.834 | 0.945 | 0.447 | 0.0 | |
| P05653 | 821 | DNA gyrase subunit A OS=B | yes | no | 0.848 | 0.971 | 0.432 | 0.0 | |
| O50628 | 833 | DNA gyrase subunit A OS=B | yes | no | 0.831 | 0.938 | 0.432 | 0.0 | |
| P0C0R0 | 893 | DNA gyrase subunit A OS=S | yes | no | 0.855 | 0.901 | 0.417 | 0.0 | |
| Q5HK04 | 893 | DNA gyrase subunit A OS=S | yes | no | 0.855 | 0.901 | 0.416 | 0.0 | |
| P0AES5 | 875 | DNA gyrase subunit A OS=S | yes | no | 0.839 | 0.902 | 0.428 | 0.0 |
| >sp|Q5YLB5|GYRA_NICBE DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRA PE=2 SV=1 | Back alignment and function desciption |
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Score = 1394 bits (3608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/928 (76%), Positives = 798/928 (85%), Gaps = 26/928 (2%)
Query: 6 FTNTSPMALSSTL---RFSSSFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSR-TPILA 61
T + PMA S+ + RFS R SS RFLS PPP + P+ A
Sbjct: 12 LTQSKPMAFSTGITPSRFSG-----------LRKTSSELRFLS--SVTPPPRKQLRPVSA 58
Query: 62 SKDEER---NGNGSV------ATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPD 112
+ EE GNGSV N R+V ELH+E T +Y++Y+MSVLLGRALPD
Sbjct: 59 RRKEEEVGDEGNGSVILRDRGENEDRNGGERVVLTELHKEATEAYMSYAMSVLLGRALPD 118
Query: 113 VRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDF 172
VRDGLKPVHRRIL+AMHELGLSS+KP+KKCARVVGEVLGKFHPHGD AVYDSLVRMAQDF
Sbjct: 119 VRDGLKPVHRRILYAMHELGLSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDF 178
Query: 173 SLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKE 232
SLR PLIRGHGNFGSIDADP AAMRYTECRLEAL+E+MLLAD++Q+TV+FVPNFD SQKE
Sbjct: 179 SLRSPLIRGHGNFGSIDADPPAAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKE 238
Query: 233 PSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGP 292
PSLLPAR+P LLLNGASGIAVGMATNIPPHNLGELVD L ALIHNPEATLQELLEYMPGP
Sbjct: 239 PSLLPARVPNLLLNGASGIAVGMATNIPPHNLGELVDALSALIHNPEATLQELLEYMPGP 298
Query: 293 DFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLV 352
DFPTGG+IMGN+GIL+A+RTGRGR+ +RGKT++ELLDSK+KR +II+EIPYQTNK+ LV
Sbjct: 299 DFPTGGIIMGNIGILEAFRTGRGRVVIRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLV 358
Query: 353 EKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNM 412
EKIA+LVENK L+G+SDIRDESDRSGMRIVIELKRG+DP+IV+N+LYRLTALQSSFSCNM
Sbjct: 359 EKIADLVENKILEGVSDIRDESDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNM 418
Query: 413 VGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVI 472
VGIL+GQPK MGLKE+LQAFLDFRCSVVERRARFKLSQ +ER HIVEGI+VGLDNLD VI
Sbjct: 419 VGILNGQPKLMGLKELLQAFLDFRCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVI 478
Query: 473 RIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKL 532
+R+A SN+ A+A+L+ EF+LSEKQA+AILD++LRRLT LER KFV+E K+L QI KL
Sbjct: 479 NTIRKASSNALAAASLRKEFELSEKQAEAILDISLRRLTALERNKFVEEGKSLRTQISKL 538
Query: 533 EELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKG 592
EELLSS+K ILQLIE+E IE+KN+F PR SMLED DSG L+DID+IPN+EMLLAISEKG
Sbjct: 539 EELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEMLLAISEKG 598
Query: 593 YVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKI 652
YVKRMKP+TFNLQNRGTIGKSVGKLRVNDAMSDF+VCRAHD VLYFSD+G VYS+ AYKI
Sbjct: 599 YVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKI 658
Query: 653 PECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR 712
PEC+R AAGTPLVQILSLSDGERITSIIPVSEFA DQ+LVMLT+NGYIKKVSLN F+SIR
Sbjct: 659 PECSRTAAGTPLVQILSLSDGERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIR 718
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
TGIIAIQLVP DELKWV+CC+N+D VAMASQNGMVIL+ C IR+L RNTRGSVAMRLK
Sbjct: 719 CTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRALGRNTRGSVAMRLK 778
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPL 832
+GDK+ASMDIIP AL K+L++T E + GPWLLFVSESG+GKRVP+S FR PL
Sbjct: 779 EGDKVASMDIIPDALQKELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPL 838
Query: 833 NRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
NRVGL GYKFS+ED LAAVFVVGFSL EDGESDEQVVLVSQSGTVNRIKVRDISIQ+RYA
Sbjct: 839 NRVGLFGYKFSSEDCLAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYA 898
Query: 893 RGVILMRLELSGKIQSASLISVTEPETD 920
RGVILMRLE +GKIQSASLIS + + +
Sbjct: 899 RGVILMRLEHAGKIQSASLISAADADPE 926
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Seems to play a critical role in chloroplast nucleoid partitioning by regulating DNA topology. DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. Nicotiana benthamiana (taxid: 4100) EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3 |
| >sp|Q9CAF6|GYRA_ARATH Probable DNA gyrase subunit A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GYRA PE=1 SV=2 | Back alignment and function description |
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| >sp|Q7XZF7|GYRA_ORYSJ Probable DNA gyrase subunit A, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GYRA PE=2 SV=2 | Back alignment and function description |
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| >sp|Q55738|GYRA_SYNY3 DNA gyrase subunit A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gyrA PE=3 SV=1 | Back alignment and function description |
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| >sp|P94605|GYRA_CLOAB DNA gyrase subunit A OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrA PE=3 SV=2 | Back alignment and function description |
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| >sp|P05653|GYRA_BACSU DNA gyrase subunit A OS=Bacillus subtilis (strain 168) GN=gyrA PE=3 SV=1 | Back alignment and function description |
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| >sp|O50628|GYRA_BACHD DNA gyrase subunit A OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrA PE=3 SV=1 | Back alignment and function description |
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| >sp|P0C0R0|GYRA_STAES DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gyrA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5HK04|GYRA_STAEQ DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gyrA PE=3 SV=1 | Back alignment and function description |
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| >sp|P0AES5|GYRA_SHIFL DNA gyrase subunit A OS=Shigella flexneri GN=gyrA PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 941 | ||||||
| 359487079 | 925 | PREDICTED: DNA gyrase subunit A, chlorop | 0.960 | 0.977 | 0.812 | 0.0 | |
| 224110064 | 932 | predicted protein [Populus trichocarpa] | 0.948 | 0.958 | 0.792 | 0.0 | |
| 449458077 | 923 | PREDICTED: DNA gyrase subunit A, chlorop | 0.950 | 0.968 | 0.795 | 0.0 | |
| 356529056 | 924 | PREDICTED: LOW QUALITY PROTEIN: DNA gyra | 0.948 | 0.966 | 0.784 | 0.0 | |
| 357438765 | 992 | DNA gyrase subunit A [Medicago truncatul | 0.967 | 0.917 | 0.722 | 0.0 | |
| 75252690 | 935 | RecName: Full=DNA gyrase subunit A, chlo | 0.958 | 0.964 | 0.761 | 0.0 | |
| 30681440 | 950 | DNA gyrase subunit A [Arabidopsis thalia | 0.939 | 0.930 | 0.764 | 0.0 | |
| 297833850 | 950 | DNA gyrase subunit A family protein [Ara | 0.947 | 0.938 | 0.758 | 0.0 | |
| 413932670 | 932 | hypothetical protein ZEAMMB73_149484 [Ze | 0.875 | 0.884 | 0.745 | 0.0 | |
| 413932669 | 933 | hypothetical protein ZEAMMB73_149484 [Ze | 0.875 | 0.883 | 0.745 | 0.0 |
| >gi|359487079|ref|XP_002271674.2| PREDICTED: DNA gyrase subunit A, chloroplastic/mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1513 bits (3916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/923 (81%), Positives = 819/923 (88%), Gaps = 19/923 (2%)
Query: 6 FTNTS----PMALS---STLRFSSSFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSRTP 58
FT T+ PMA S S LR S L H+ + RFLS ++ PP +P
Sbjct: 5 FTPTALFHPPMAFSAASSLLRHQFSLPL-HHRLSYLRFLS-----VTAPPRKP-----HL 53
Query: 59 ILASKDEERNGNGS-VATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGL 117
+ A + ++ GNGS V RIVP ELH+E T +Y+ Y+MSVLLGRALPDVRDGL
Sbjct: 54 VRARRRDDEEGNGSLVLKEKDGRDGRIVPTELHKEATEAYMAYAMSVLLGRALPDVRDGL 113
Query: 118 KPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYP 177
KPVHRRILFAMHELGLSSRKP+KKCARVVGEVLGKFHPHGD AVYDSLVRMAQDFSLR P
Sbjct: 114 KPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCP 173
Query: 178 LIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLP 237
LI+GHGNFGS+DADP AAMRYTECRLEAL+EAMLLAD++QDTV+F+PNFD SQKEPSLLP
Sbjct: 174 LIQGHGNFGSVDADPPAAMRYTECRLEALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLP 233
Query: 238 ARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTG 297
ARLPTLLLNG+SGIAVGMATNIPPHN+GELVDVLC LI NPEATLQELLEYMPGPDFPTG
Sbjct: 234 ARLPTLLLNGSSGIAVGMATNIPPHNIGELVDVLCVLIRNPEATLQELLEYMPGPDFPTG 293
Query: 298 GLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAE 357
GLIMGN+GIL+AYRTGRGRI VRGKTEVELLDSK+KR VIIKEIPYQTNKS LVEKIAE
Sbjct: 294 GLIMGNIGILEAYRTGRGRIIVRGKTEVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAE 353
Query: 358 LVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILD 417
LVENK+LDGISDIRDESDRSGMRIVIELKRG+DPSIV+N LYRLTALQSSFSCNM+GILD
Sbjct: 354 LVENKSLDGISDIRDESDRSGMRIVIELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILD 413
Query: 418 GQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVRE 477
GQPK MGLKE+LQAFLDFRCSVVERRARFKLSQ +ERRHIVEGI+VGLDNLD VIR+++E
Sbjct: 414 GQPKLMGLKELLQAFLDFRCSVVERRARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKE 473
Query: 478 APSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
APSN+ AS L++EF LSE+QA+AILD++LRR+T LER+KFV ESK+LMEQI KL+ELLS
Sbjct: 474 APSNAMASTGLRNEFGLSERQAEAILDISLRRITRLEREKFVTESKSLMEQISKLQELLS 533
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SRK ILQLIEQE IELKNRFSTPR SMLED DSGQL+D+D+IPN+EMLLA+SEKGYVKRM
Sbjct: 534 SRKQILQLIEQEAIELKNRFSTPRRSMLEDTDSGQLEDVDVIPNEEMLLAVSEKGYVKRM 593
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVC AHD+VLYFSDRGIV+SARAYKIPECTR
Sbjct: 594 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTR 653
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGII 717
AAGTPLVQIL LSDGERITSIIPVSEFA DQFL+MLTMNGYIKKVSLN FSSIR+TGII
Sbjct: 654 TAAGTPLVQILCLSDGERITSIIPVSEFAEDQFLLMLTMNGYIKKVSLNFFSSIRSTGII 713
Query: 718 AIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKM 777
AIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSC+IIR+L RNTRGS+AMRLK GDKM
Sbjct: 714 AIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRALGRNTRGSIAMRLKQGDKM 773
Query: 778 ASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL 837
ASMDIIPAA+ KDLE+ ED S + +GPWLLFVSESG GKRVPLS FR PLNRVGL
Sbjct: 774 ASMDIIPAAIRKDLEKALEDRQSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGL 833
Query: 838 IGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
IGYKFSAED LAAVFVVGFSL EDGESDEQVVLVSQSGT+NRIKV DISIQ+R+ARGVIL
Sbjct: 834 IGYKFSAEDHLAAVFVVGFSLTEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVIL 893
Query: 898 MRLELSGKIQSASLISVTEPETD 920
MRLE +GKIQSASL+S TE ETD
Sbjct: 894 MRLEYAGKIQSASLMSATETETD 916
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa] gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449458077|ref|XP_004146774.1| PREDICTED: DNA gyrase subunit A, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356529056|ref|XP_003533113.1| PREDICTED: LOW QUALITY PROTEIN: DNA gyrase subunit A, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357438765|ref|XP_003589659.1| DNA gyrase subunit A [Medicago truncatula] gi|355478707|gb|AES59910.1| DNA gyrase subunit A [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|75252690|sp|Q5YLB5.1|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana] | Back alignment and taxonomy information |
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| >gi|30681440|ref|NP_187680.2| DNA gyrase subunit A [Arabidopsis thaliana] gi|110808536|sp|Q9CAF6.2|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor gi|332641422|gb|AEE74943.1| DNA gyrase subunit A [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp. lyrata] gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|413932670|gb|AFW67221.1| hypothetical protein ZEAMMB73_149484 [Zea mays] | Back alignment and taxonomy information |
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| >gi|413932669|gb|AFW67220.1| hypothetical protein ZEAMMB73_149484 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 941 | ||||||
| TAIR|locus:2075765 | 950 | GYRA "DNA GYRASE A" [Arabidops | 0.908 | 0.9 | 0.770 | 0.0 | |
| UNIPROTKB|Q7NC97 | 840 | gyrA "DNA gyrase subunit A" [G | 0.861 | 0.965 | 0.495 | 2.4e-211 | |
| TIGR_CMR|CHY_2704 | 812 | CHY_2704 "DNA gyrase, A subuni | 0.740 | 0.858 | 0.477 | 9.7e-185 | |
| UNIPROTKB|P05653 | 821 | gyrA "DNA gyrase subunit A" [B | 0.786 | 0.901 | 0.436 | 3.4e-182 | |
| TIGR_CMR|BA_0006 | 823 | BA_0006 "DNA gyrase, A subunit | 0.784 | 0.896 | 0.435 | 4.4e-180 | |
| UNIPROTKB|P0AES4 | 875 | gyrA [Escherichia coli K-12 (t | 0.433 | 0.466 | 0.534 | 5.6e-178 | |
| UNIPROTKB|A9WK19 | 822 | gyrA "DNA gyrase subunit A" [C | 0.734 | 0.840 | 0.463 | 1.5e-177 | |
| TIGR_CMR|DET_1630 | 809 | DET_1630 "DNA gyrase, A subuni | 0.736 | 0.856 | 0.471 | 9.4e-176 | |
| TIGR_CMR|CBU_0524 | 850 | CBU_0524 "DNA gyrase, A subuni | 0.427 | 0.472 | 0.550 | 1.5e-169 | |
| UNIPROTKB|Q9KSJ8 | 894 | gyrA "DNA gyrase subunit A" [V | 0.432 | 0.455 | 0.546 | 7e-169 |
| TAIR|locus:2075765 GYRA "DNA GYRASE A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3381 (1195.2 bits), Expect = 0., P = 0.
Identities = 662/859 (77%), Positives = 761/859 (88%)
Query: 63 KDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHR 122
K+E NG + G RIVP ELH+E T SY++Y++SVLLGRALPDVRDGLKPVHR
Sbjct: 82 KEESGANNGGLVVSGDE--SRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHR 139
Query: 123 RILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGH 182
RILFAMHELG+SS+KP+KKCARVVGEVLGKFHPHGD AVYDSLVRMAQ FSLR PLI+GH
Sbjct: 140 RILFAMHELGMSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGH 199
Query: 183 GNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXX 242
GNFGSIDADP AAMRYTECRL+ L+EA+LL+D+DQDTV+FV NFD SQKE
Sbjct: 200 GNFGSIDADPPAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPA 259
Query: 243 XXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMG 302
NGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMP PDFPTGG+IMG
Sbjct: 260 LLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMG 319
Query: 303 NLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENK 362
NLG+LDAYRTGRGR+ VRGK EVELLD K+KR VII EIPYQTNK+ LV+KIAELVENK
Sbjct: 320 NLGVLDAYRTGRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENK 379
Query: 363 TLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQ 422
TL+GISDIRDESDR+GMR+VIELKRG DP++V+N+LYR TALQSSFSCNMVGI DG+PK
Sbjct: 380 TLEGISDIRDESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKL 439
Query: 423 MGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNS 482
MGLKE+LQAF+DFRCSVVERRARFKLS ++R+HI+EGI+VGLDN+D VI ++ +A S+S
Sbjct: 440 MGLKELLQAFIDFRCSVVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHS 499
Query: 483 TASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNI 542
+A+AAL+ E+ LSEKQA+AIL++ LRRLT LERKKF DES +L EQI KLE+LLS+R NI
Sbjct: 500 SATAALQSEYGLSEKQAEAILEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNI 559
Query: 543 LQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTF 602
L+LIEQE IELK+RFS+PR SMLED+DSG L+DID+IPN+EML+A+SEKGYVKRMK +TF
Sbjct: 560 LKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTF 619
Query: 603 NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGT 662
NLQ+RGTIGKSVGKLRV+DAMSDF+VC AHDHVL+FSDRGIVYS RAYKIPEC+RNAAGT
Sbjct: 620 NLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGT 679
Query: 663 PLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV 722
PLVQILS+S+GER+TSI+PVSEFA D++L+MLT+NG IKKVSL LFS IR+TGIIAIQL
Sbjct: 680 PLVQILSMSEGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLN 739
Query: 723 PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDI 782
GDELKWVRCC++DDLVAMASQNGMV LS+CD +R+LSRNT+G AMRLK+ DK+ASMDI
Sbjct: 740 SGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDI 799
Query: 783 IPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF 842
IPA+L KD+E ED+ S VK S+GPWLLFV E+G+GKRVPLSSFR+ LNRVGL GYKF
Sbjct: 800 IPASLRKDMEEKSEDA-SLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKF 858
Query: 843 SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLEL 902
+ +DRLAAVFVVG+SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQ+R ARGVILMRL+
Sbjct: 859 AEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDH 918
Query: 903 SGKIQSASLISVT-EPETD 920
+GKIQSASLIS E ET+
Sbjct: 919 AGKIQSASLISAADEEETE 937
|
|
| UNIPROTKB|Q7NC97 gyrA "DNA gyrase subunit A" [Gloeobacter violaceus PCC 7421 (taxid:251221)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CHY_2704 CHY_2704 "DNA gyrase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P05653 gyrA "DNA gyrase subunit A" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|BA_0006 BA_0006 "DNA gyrase, A subunit" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P0AES4 gyrA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A9WK19 gyrA "DNA gyrase subunit A" [Chloroflexus aurantiacus J-10-fl (taxid:324602)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|DET_1630 DET_1630 "DNA gyrase, A subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CBU_0524 CBU_0524 "DNA gyrase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KSJ8 gyrA "DNA gyrase subunit A" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q932M0 | GYRA_STAAM | 5, ., 9, 9, ., 1, ., 3 | 0.4190 | 0.8374 | 0.8863 | yes | no |
| Q1MQ89 | GYRA_LAWIP | 5, ., 9, 9, ., 1, ., 3 | 0.4186 | 0.8342 | 0.9573 | yes | no |
| P41080 | GYRA_RICPR | 5, ., 9, 9, ., 1, ., 3 | 0.3952 | 0.8671 | 0.9016 | yes | no |
| P48372 | GYRA_PSEAE | 5, ., 9, 9, ., 1, ., 3 | 0.3977 | 0.8384 | 0.8548 | yes | no |
| D5ECW5 | GYRA_AMICL | 5, ., 9, 9, ., 1, ., 3 | 0.4218 | 0.8501 | 0.9791 | yes | no |
| P48370 | GYRA_HELPY | 5, ., 9, 9, ., 1, ., 3 | 0.4336 | 0.8384 | 0.9540 | yes | no |
| P48371 | GYRA_NEIGO | 5, ., 9, 9, ., 1, ., 3 | 0.3887 | 0.8597 | 0.8831 | yes | no |
| P57277 | GYRA_BUCAI | 5, ., 9, 9, ., 1, ., 3 | 0.4156 | 0.8522 | 0.9662 | yes | no |
| P0C0R0 | GYRA_STAES | 5, ., 9, 9, ., 1, ., 3 | 0.4173 | 0.8554 | 0.9014 | yes | no |
| P05653 | GYRA_BACSU | 5, ., 9, 9, ., 1, ., 3 | 0.4323 | 0.8480 | 0.9719 | yes | no |
| P72524 | GYRA_STRPN | 5, ., 9, 9, ., 1, ., 3 | 0.4007 | 0.8544 | 0.9781 | yes | no |
| P37411 | GYRA_SALTY | 5, ., 9, 9, ., 1, ., 3 | 0.4114 | 0.8714 | 0.9339 | yes | no |
| Q92IZ6 | GYRA_RICCN | 5, ., 9, 9, ., 1, ., 3 | 0.3982 | 0.8671 | 0.9016 | yes | no |
| O83051 | GYRA_TREPA | 5, ., 9, 9, ., 1, ., 3 | 0.4075 | 0.8374 | 0.9692 | yes | no |
| Q7XZF7 | GYRA_ORYSJ | 5, ., 9, 9, ., 1, ., 3 | 0.7398 | 0.8788 | 0.8807 | yes | no |
| Q1RID9 | GYRA_RICBR | 5, ., 9, 9, ., 1, ., 3 | 0.4040 | 0.8756 | 0.9104 | yes | no |
| P47235 | GYRA_CAMFE | 5, ., 9, 9, ., 1, ., 3 | 0.4134 | 0.8437 | 0.9211 | yes | no |
| P0AES5 | GYRA_SHIFL | 5, ., 9, 9, ., 1, ., 3 | 0.4280 | 0.8395 | 0.9028 | yes | no |
| Q8NKW8 | GYRA_STAAW | 5, ., 9, 9, ., 1, ., 3 | 0.4190 | 0.8374 | 0.8883 | yes | no |
| Q9ZLD9 | GYRA_HELPJ | 5, ., 9, 9, ., 1, ., 3 | 0.4325 | 0.8374 | 0.9516 | yes | no |
| Q6GD84 | GYRA_STAAS | 5, ., 9, 9, ., 1, ., 3 | 0.4190 | 0.8374 | 0.8883 | yes | no |
| Q2G2Q0 | GYRA_STAA8 | 5, ., 9, 9, ., 1, ., 3 | 0.4190 | 0.8374 | 0.8883 | yes | no |
| Q6GKT9 | GYRA_STAAR | 5, ., 9, 9, ., 1, ., 3 | 0.4190 | 0.8374 | 0.8893 | yes | no |
| Q5YLB5 | GYRA_NICBE | 5, ., 9, 9, ., 1, ., 3 | 0.7618 | 0.9585 | 0.9647 | N/A | no |
| P20831 | GYRA_STAAU | 5, ., 9, 9, ., 1, ., 3 | 0.4190 | 0.8374 | 0.8863 | yes | no |
| P14829 | GYRA_KLEOX | 5, ., 9, 9, ., 1, ., 3 | 0.4034 | 0.8597 | 0.9235 | yes | no |
| D8K235 | GYRA_DEHLB | 5, ., 9, 9, ., 1, ., 3 | 0.4193 | 0.8299 | 0.9594 | yes | no |
| O50628 | GYRA_BACHD | 5, ., 9, 9, ., 1, ., 3 | 0.4323 | 0.8310 | 0.9387 | yes | no |
| P43700 | GYRA_HAEIN | 5, ., 9, 9, ., 1, ., 3 | 0.4051 | 0.8607 | 0.9204 | yes | no |
| P48369 | GYRA_AERSA | 5, ., 9, 9, ., 1, ., 3 | 0.3931 | 0.8384 | 0.8557 | yes | no |
| Q5HK04 | GYRA_STAEQ | 5, ., 9, 9, ., 1, ., 3 | 0.4161 | 0.8554 | 0.9014 | yes | no |
| P41513 | GYRA_ERWCA | 5, ., 9, 9, ., 1, ., 3 | 0.4175 | 0.8384 | 0.8986 | yes | no |
| B3PN30 | GYRA_MYCA5 | 5, ., 9, 9, ., 1, ., 3 | 0.4144 | 0.8320 | 0.8719 | yes | no |
| Q03470 | GYRA_CAMJE | 5, ., 9, 9, ., 1, ., 3 | 0.4174 | 0.8416 | 0.9177 | yes | no |
| Q55738 | GYRA_SYNY3 | 5, ., 9, 9, ., 1, ., 3 | 0.5023 | 0.8597 | 0.9406 | N/A | no |
| Q8DPM2 | GYRA_STRR6 | 5, ., 9, 9, ., 1, ., 3 | 0.4014 | 0.8533 | 0.9768 | yes | no |
| P48354 | GYRA_MYCS2 | 5, ., 9, 9, ., 1, ., 3 | 0.4048 | 0.8352 | 0.9334 | yes | no |
| Q9CAF6 | GYRA_ARATH | 5, ., 9, 9, ., 1, ., 3 | 0.7648 | 0.9394 | 0.9305 | yes | no |
| C5CHA8 | GYRA_KOSOT | 5, ., 9, 9, ., 1, ., 3 | 0.4083 | 0.8459 | 0.9802 | yes | no |
| Q89AS3 | GYRA_BUCBP | 5, ., 9, 9, ., 1, ., 3 | 0.3899 | 0.8384 | 0.9315 | yes | no |
| P94605 | GYRA_CLOAB | 5, ., 9, 9, ., 1, ., 3 | 0.4479 | 0.8342 | 0.9457 | yes | no |
| Q8K9W2 | GYRA_BUCAP | 5, ., 9, 9, ., 1, ., 3 | 0.4189 | 0.8544 | 0.9745 | yes | no |
| Q99XG5 | GYRA_STAAN | 5, ., 9, 9, ., 1, ., 3 | 0.4190 | 0.8374 | 0.8863 | yes | no |
| Q5HJZ0 | GYRA_STAAC | 5, ., 9, 9, ., 1, ., 3 | 0.4190 | 0.8374 | 0.8883 | yes | no |
| Q0BST5 | GYRA_GRABC | 5, ., 9, 9, ., 1, ., 3 | 0.3807 | 0.8852 | 0.8861 | yes | no |
| Q4UKM1 | GYRA_RICFE | 5, ., 9, 9, ., 1, ., 3 | 0.4038 | 0.8660 | 0.8995 | yes | no |
| Q18GY3 | GYRA_HALWD | 5, ., 9, 9, ., 1, ., 3 | 0.4 | 0.8501 | 0.9345 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.99.1.3 | 0.979 |
| 3rd Layer | 5.99.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 941 | |||
| PRK05560 | 805 | PRK05560, PRK05560, DNA gyrase subunit A; Validate | 0.0 | |
| TIGR01063 | 800 | TIGR01063, gyrA, DNA gyrase, A subunit | 0.0 | |
| COG0188 | 804 | COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/ | 0.0 | |
| PRK05561 | 742 | PRK05561, PRK05561, DNA topoisomerase IV subunit A | 0.0 | |
| cd00187 | 445 | cd00187, TOP4c, DNA Topoisomerase, subtype IIA; do | 0.0 | |
| pfam00521 | 427 | pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase | 0.0 | |
| smart00434 | 444 | smart00434, TOP4c, DNA Topoisomerase IV | 0.0 | |
| TIGR01061 | 738 | TIGR01061, parC_Gpos, DNA topoisomerase IV, A subu | 0.0 | |
| PRK13979 | 957 | PRK13979, PRK13979, DNA topoisomerase IV subunit A | 0.0 | |
| TIGR01062 | 735 | TIGR01062, parC_Gneg, DNA topoisomerase IV, A subu | 1e-172 | |
| PRK09631 | 635 | PRK09631, PRK09631, DNA topoisomerase IV subunit A | 4e-69 | |
| PRK12758 | 869 | PRK12758, PRK12758, DNA topoisomerase IV subunit A | 1e-54 | |
| PRK09630 | 479 | PRK09630, PRK09630, DNA topoisomerase IV subunit A | 1e-44 | |
| PHA02592 | 439 | PHA02592, 52, DNA topisomerase II medium subunit; | 5e-44 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 4e-22 | |
| PLN03128 | 1135 | PLN03128, PLN03128, DNA topoisomerase 2; Provision | 1e-15 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 1e-13 | |
| PRK05560 | 805 | PRK05560, PRK05560, DNA gyrase subunit A; Validate | 4e-13 | |
| PRK05560 | 805 | PRK05560, PRK05560, DNA gyrase subunit A; Validate | 5e-10 | |
| PRK13979 | 957 | PRK13979, PRK13979, DNA topoisomerase IV subunit A | 3e-07 | |
| pfam03989 | 48 | pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal do | 1e-06 | |
| pfam03989 | 48 | pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal do | 2e-06 | |
| PRK05560 | 805 | PRK05560, PRK05560, DNA gyrase subunit A; Validate | 5e-06 | |
| pfam03989 | 48 | pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal do | 1e-05 | |
| pfam03989 | 48 | pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal do | 8e-05 | |
| pfam03989 | 48 | pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal do | 2e-04 | |
| pfam03989 | 48 | pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal do | 3e-04 | |
| pfam10473 | 140 | pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of | 0.001 |
| >gnl|CDD|235502 PRK05560, PRK05560, DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Score = 1165 bits (3017), Expect = 0.0
Identities = 406/833 (48%), Positives = 578/833 (69%), Gaps = 38/833 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PV + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELG + KP+KK
Sbjct: 4 RIIPVNIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGNTPDKPYKKS 63
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+AVYD+LVRMAQDFS+RYPL+ G GNFGSID DPAAAMRYTE R
Sbjct: 64 ARIVGDVMGKYHPHGDSAVYDALVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEAR 123
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ +L ADID++TV+FVPN+D S++EP++LPAR P LL+NG+SGIAVGMATNIPPH
Sbjct: 124 MSKIAHELL-ADIDKETVDFVPNYDGSEQEPTVLPARFPNLLVNGSSGIAVGMATNIPPH 182
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NP+ T++EL+E +PGPDFPTGG+I+G GI +AYRTGRG I +R K
Sbjct: 183 NLGEVIDACLALIDNPDITIEELMEIIPGPDFPTGGIILGRSGIREAYRTGRGSIVMRAK 242
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E R +I+ EIPYQ NK+ L+EKIAELV+ K ++GISD+RDESDR GMRIV
Sbjct: 243 AEIE---EIKGREAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESDRDGMRIV 299
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A P +V+N+LY+ T LQ+SF NM+ ++DGQPK + LKE+L+AFL+ R V+ R
Sbjct: 300 IELKRDAVPEVVLNNLYKHTQLQTSFGINMLALVDGQPKLLNLKEILEAFLEHRKEVITR 359
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L + +ER HI+EG+++ LDN+D VI ++R +P+ + A L + F LSE QA AI
Sbjct: 360 RTRFELRKAEERAHILEGLLIALDNIDEVIALIRASPTPAEAKEGLMERFGLSEIQAQAI 419
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K DE K L+ I L+++L+S + +L++I++E++E+K +F PR
Sbjct: 420 LDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGDPRR 479
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + G +DD D+IP +++++ ++ GY+KR + + Q RG G S K + +D
Sbjct: 480 TEIIE-GEGDIDDEDLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDF 538
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V HD +L+F++RG VY + Y+IPE +R A G P+V +L L GE+IT+I+PV
Sbjct: 539 VEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPV 598
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D++L T NG +KK SL+ FS+IR+ GIIAI L GDEL VR DD + +A
Sbjct: 599 REFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDILLA 658
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++NG I +R + R RG ++L++GD++ SMD++
Sbjct: 659 TKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVR------------------ 700
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR--VGLIGYKFSAE-DRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R R G+I K + + +L V
Sbjct: 701 --EDSQEILTVTENGYGKRTPVSEYRL--QGRGGKGVITIKITEKNGKLVGALPV----- 751
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ D++++L++ SG + R +V +ISI R +GV L+RL+ K+ S + +
Sbjct: 752 ---DDDDEIMLITDSGKLIRTRVSEISITGRNTQGVRLIRLDEGDKVVSVARV 801
|
Length = 805 |
| >gnl|CDD|233256 TIGR01063, gyrA, DNA gyrase, A subunit | Back alignment and domain information |
|---|
| >gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235503 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|238111 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II | Back alignment and domain information |
|---|
| >gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A | Back alignment and domain information |
|---|
| >gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV | Back alignment and domain information |
|---|
| >gnl|CDD|233255 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit, Gram-positive | Back alignment and domain information |
|---|
| >gnl|CDD|237576 PRK13979, PRK13979, DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130134 TIGR01062, parC_Gneg, DNA topoisomerase IV, A subunit, proteobacterial | Back alignment and domain information |
|---|
| >gnl|CDD|236598 PRK09631, PRK09631, DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|170022 PRK09630, PRK09630, DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222896 PHA02592, 52, DNA topisomerase II medium subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235502 PRK05560, PRK05560, DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235502 PRK05560, PRK05560, DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|237576 PRK13979, PRK13979, DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217832 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain, beta-propeller | Back alignment and domain information |
|---|
| >gnl|CDD|217832 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain, beta-propeller | Back alignment and domain information |
|---|
| >gnl|CDD|235502 PRK05560, PRK05560, DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|217832 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain, beta-propeller | Back alignment and domain information |
|---|
| >gnl|CDD|217832 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain, beta-propeller | Back alignment and domain information |
|---|
| >gnl|CDD|217832 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain, beta-propeller | Back alignment and domain information |
|---|
| >gnl|CDD|217832 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain, beta-propeller | Back alignment and domain information |
|---|
| >gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 941 | |||
| PRK13979 | 957 | DNA topoisomerase IV subunit A; Provisional | 100.0 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 100.0 | |
| COG0188 | 804 | GyrA Type IIA topoisomerase (DNA gyrase/topo II, t | 100.0 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 100.0 | |
| TIGR01061 | 738 | parC_Gpos DNA topoisomerase IV, A subunit, Gram-po | 100.0 | |
| PRK05561 | 742 | DNA topoisomerase IV subunit A; Validated | 100.0 | |
| TIGR01062 | 735 | parC_Gneg DNA topoisomerase IV, A subunit, proteob | 100.0 | |
| PRK09631 | 635 | DNA topoisomerase IV subunit A; Provisional | 100.0 | |
| PRK12758 | 869 | DNA topoisomerase IV subunit A; Provisional | 100.0 | |
| cd00187 | 445 | TOP4c DNA Topoisomerase, subtype IIA; domain A'; b | 100.0 | |
| smart00434 | 445 | TOP4c DNA Topoisomerase IV. Bacterial DNA topoisom | 100.0 | |
| PHA02592 | 439 | 52 DNA topisomerase II medium subunit; Provisional | 100.0 | |
| PF00521 | 426 | DNA_topoisoIV: DNA gyrase/topoisomerase IV, subuni | 100.0 | |
| PRK09630 | 479 | DNA topoisomerase IV subunit A; Provisional | 100.0 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 100.0 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 100.0 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 100.0 | |
| KOG0355 | 842 | consensus DNA topoisomerase type II [Chromatin str | 100.0 | |
| PRK13979 | 957 | DNA topoisomerase IV subunit A; Provisional | 100.0 | |
| KOG0355 | 842 | consensus DNA topoisomerase type II [Chromatin str | 99.97 | |
| TIGR01061 | 738 | parC_Gpos DNA topoisomerase IV, A subunit, Gram-po | 99.96 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 99.95 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 99.95 | |
| PRK05561 | 742 | DNA topoisomerase IV subunit A; Validated | 99.94 | |
| TIGR01062 | 735 | parC_Gneg DNA topoisomerase IV, A subunit, proteob | 99.93 | |
| COG0188 | 804 | GyrA Type IIA topoisomerase (DNA gyrase/topo II, t | 99.83 | |
| PF03989 | 48 | DNA_gyraseA_C: DNA gyrase C-terminal domain, beta- | 98.55 | |
| PF03989 | 48 | DNA_gyraseA_C: DNA gyrase C-terminal domain, beta- | 98.48 | |
| PRK09631 | 635 | DNA topoisomerase IV subunit A; Provisional | 97.6 | |
| PRK12758 | 869 | DNA topoisomerase IV subunit A; Provisional | 97.36 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 94.01 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 83.07 |
| >PRK13979 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-204 Score=1847.27 Aligned_cols=815 Identities=38% Similarity=0.641 Sum_probs=759.5
Q ss_pred CCCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhh
Q 002290 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNA 160 (941)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s 160 (941)
+++|++++|+++|+++|++||||||++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|
T Consensus 10 ~~~i~~~~~~~~~~~~yl~Ya~~vi~~RAlPd~rDGLKPvqRrILyam~~~~~~~~~~~~K~A~ivG~v~g~YHPHGd~s 89 (957)
T PRK13979 10 DNNIIKIPLEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARIVGDILGKYHPHGDSS 89 (957)
T ss_pred cCceeeecHHHHHHHHHHHhHHHHHHhhcCCccccCCCchHhHHHHHHHHcCCCCCCCceeehhhHHhHHhccCCCchHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccccccc
Q 002290 161 VYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARL 240 (941)
Q Consensus 161 ~y~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~i 240 (941)
+|||||||||+|+||||||||||||||+|||+|||||||||||+++|+.| ++|+|+++|+|+|||||++.||+||||+|
T Consensus 90 iy~alvrmaQ~f~~~~plidg~GnFGs~dgd~~AA~RYte~rl~~~a~~~-~~d~d~~~v~~~~n~d~~~~EP~vlp~~~ 168 (957)
T PRK13979 90 VYDAMVILAQDFTTRMPLIDGHGNWGSIDGDSAAAMRYTEARLTPIAMEM-LRDIDKDVVNMVDNYSDSEKEPEVLPARY 168 (957)
T ss_pred HHHHHHHHhhhccccceeEeCCCCCCCCCCCchhhhhhhhhcchHHHHHH-hhccCccccccccCCCCCeeccccccccC
Confidence 99999999999999999999999999999999999999999999999996 68999999999999999999999999999
Q ss_pred ceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEE
Q 002290 241 PTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320 (941)
Q Consensus 241 P~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~r 320 (941)
||||||||+|||||||||||||||+|||+||+++|+||+++++||++++|||||||||+|.+.+|+.++|+||+|++++|
T Consensus 169 P~lLvNG~~GIavG~aT~Ipphnl~evi~a~~~~i~~~~~~~~~l~~~~~gpDfptGg~i~~~~~i~~~y~tg~G~~~~r 248 (957)
T PRK13979 169 PNLLVNGAFGIAVGLATNIPPHNLKEVIDGTLAYIDNNEITTKELMNYIKGPDLPTGGILIGKKSLLSAYETGEGKVTLR 248 (957)
T ss_pred CceeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCCHHHHhhhccCCCCCCCeEEECchhHHHHhhcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCC----CCccccccccCCCCceEEEEEeCCCCCh---HH
Q 002290 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKT----LDGISDIRDESDRSGMRIVIELKRGADP---SI 393 (941)
Q Consensus 321 g~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~----i~~I~di~Des~~~girivi~lk~~~~~---~~ 393 (941)
|++++|... .++++|+||||||++|+++|+++|++|+.+|+ ++||+|++||||++|+||+|+||+++++ +.
T Consensus 249 ~k~~~e~~~--~~~~~ivitEiPy~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~desd~~g~rivi~lk~~~~~~~~~~ 326 (957)
T PRK13979 249 AKTKIEKLE--NGRLGIVITEFPYRRNKAKLLQTISEMTADKKHSKALENISDIRDESDRNGIRAVIEFKKSADEDVAEK 326 (957)
T ss_pred EEEEEEEcC--CCceEEEEEccCCcccHHHHHHHHHHHHhcccccccCccccchhhccCCCceEEEEEECCCCCcccHHH
Confidence 999999754 35678999999999999999999999998776 8999999999999999999999999885 88
Q ss_pred HHHHHHhhcccceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHH
Q 002290 394 VVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIR 473 (941)
Q Consensus 394 ~~~~L~k~t~Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~ 473 (941)
++++|||+|+||++|++||++|+||+|+.+++++||++|++||+++|+||++|+|+++++|+||++|++++++++|+||+
T Consensus 327 v~~~L~~~t~l~~~~~~n~~~~~~~~p~~~~l~~il~~~~~~r~~~~~rr~~~~l~k~~~r~~i~eGl~~a~~~id~vi~ 406 (957)
T PRK13979 327 VLKYLYKKTDLQCNISFNMVALADGKPETMGLKTMLKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIGIMDEIIK 406 (957)
T ss_pred HHHHHHHhCCCeeEeeeeEEEEECCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 002290 474 IVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553 (941)
Q Consensus 474 iIr~s~~~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~el 553 (941)
+||+|++.++|++.|++.|+||+.||+|||+|+|||||++|+.||++|+++|+++|++|+.||+|+++++++|++||.++
T Consensus 407 ~ir~s~~~~~a~~~l~~~f~~s~~qa~aIl~mrL~~Lt~le~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~ei 486 (957)
T PRK13979 407 TIRSSKSKKDASENLIEKFGFTDEQAEAILELMLYRLTGLEIVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEV 486 (957)
T ss_pred HHHcCCCHHHHHHHHHHHhCCCHHHHHHHHhCcHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcccccccCC-CCCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCC
Q 002290 554 KNRFSTPRLSMLEDAD-SGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAH 632 (941)
Q Consensus 554 k~kfg~~RRT~I~~~~-~~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~ 632 (941)
|++||+||||+|..+. +.+++.+|+|++|+++|++|++|||||++.++|..|++| ..+++++++|.+.+++.|++|
T Consensus 487 k~kygd~RRT~I~~~~~~~~i~~edlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g---~~~~~~ke~D~i~~~~~~~T~ 563 (957)
T PRK13979 487 KEKYGDERRTSIIEDDEKAKIDVEELIVVEDVVITLSNEGFIKRIPLKSYNRSNSN---VEDIEYREGDFNKFLIQSNTK 563 (957)
T ss_pred HHHhCCCCCeeeccccccccCCHhHcCCCcceEEEEecCCEEEEcccccccccccc---ccccccCCCCceEEEEEEcCC
Confidence 9999999999997542 346888999999999999999999999999999888764 567889999999999999999
Q ss_pred ceEEEEccCCeEEEEEecccCCcCccccCcccccccc-cC-CCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccc
Q 002290 633 DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS-LS-DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710 (941)
Q Consensus 633 d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~-L~-~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~ 710 (941)
|+|+|||+.|++|++++|+||+++|+++|.|++++++ +. ++|+|++++++++|.++.+++++|++|++||+++++|..
T Consensus 564 d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~ 643 (957)
T PRK13979 564 DTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVT 643 (957)
T ss_pred CEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccc
Confidence 9999999999999999999999999999999999996 76 799999999999887788999999999999999999998
Q ss_pred cccCceEEEecCCCCeEEEEEEecCC---CeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccc
Q 002290 711 IRTTGIIAIQLVPGDELKWVRCCTND---DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787 (941)
Q Consensus 711 ~~r~G~~~ikLk~gD~Lv~v~~~~~~---d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~ 787 (941)
.++ |+.+++|++||+|+++..+.++ +.|+++|++|+++||++++||.+||.++||++|+|++||+|+++.++....
T Consensus 644 ~r~-~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR~a~GVkgI~L~~~D~Vv~~~~~~~~~ 722 (957)
T PRK13979 644 NYT-KLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDRNIIGYQLFDLLPNDSIKKVDFCDNYE 722 (957)
T ss_pred ccc-ceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCeeeEeeCCCCEEEEEEEEhhhh
Confidence 765 6999999999999999998864 569999999999999999999999999999999999999999998875200
Q ss_pred ccccc----CC-----------------------------------------CCCC-C----------CC----------
Q 002290 788 HKDLE----RT-----------------------------------------PEDS-H----------SN---------- 801 (941)
Q Consensus 788 ~~~~~----~~-----------------------------------------~~~~-~----------~~---------- 801 (941)
...+. .. +.++ + ..
T Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~d~Ll~FTn~Gkvy~ikv~eIPe~~~kG~~i~nll~~l~~~E~Ii~i~~ 802 (957)
T PRK13979 723 YKEFYVNINKKGIIKISDKDNKSSISVFTNSSKNLLIFSDEGKVYKIPAFMLQNIKNEGINISALTGDFEKDEKIIKIIS 802 (957)
T ss_pred hcchhhhcccccceeecccccccccceeecCCceEEEEecCCeEEEEEeeecccccccCcCHHHhhcccCCCCeEEEEEe
Confidence 00000 00 0000 0 00
Q ss_pred -CCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCC-CCceEEEEecCCeEE
Q 002290 802 -VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGE-SDEQVVLVSQSGTVN 878 (941)
Q Consensus 802 -~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~-~~deIllvT~~G~~i 878 (941)
.....+.+++++|++|++||+++++|...+| |..+|+|++ +|+|+++.++ + ++++|+++|++|+++
T Consensus 803 ~~~~~~~~~Ll~vTk~G~iKRt~lsef~~~rr---~~~aikLke~~DeLV~v~~v--------~~~~~eIvL~T~~G~~i 871 (957)
T PRK13979 803 IFEFEEDLSIYFFSKKGLVKKTLLNEFKGEGN---STQAYKFKHKEDELVNVDIK--------EHEEKNILLITEKGMAI 871 (957)
T ss_pred ecccCCCceEEEEecCCcEEEeEHHHhcccCC---CeEEEEecCCCCeEEEEEEe--------cCCCCEEEEEECCCeEE
Confidence 0001234699999999999999999999875 368899986 6999999876 3 467899999999999
Q ss_pred EEecCccccccccCCceEEEEcCCCCeEEEEEEec
Q 002290 879 RIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913 (941)
Q Consensus 879 R~~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~ 913 (941)
||++++||++||.++||++|+|.++|+|+++.++.
T Consensus 872 Rf~~~eIr~~GR~A~GVk~I~L~~~D~Vv~~~~i~ 906 (957)
T PRK13979 872 RFKSEAVNPMGKIASGVTGISLKDEDKVIYGSIID 906 (957)
T ss_pred EEEhHHCCcccccCCCeEEEEeCCCCEEEEEEEEc
Confidence 99999999999999999999999999999998884
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
| >COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
| >TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive | Back alignment and domain information |
|---|
| >PRK05561 DNA topoisomerase IV subunit A; Validated | Back alignment and domain information |
|---|
| >TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial | Back alignment and domain information |
|---|
| >PRK09631 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >PRK12758 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II | Back alignment and domain information |
|---|
| >smart00434 TOP4c DNA Topoisomerase IV | Back alignment and domain information |
|---|
| >PHA02592 52 DNA topisomerase II medium subunit; Provisional | Back alignment and domain information |
|---|
| >PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >PRK09630 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PRK13979 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive | Back alignment and domain information |
|---|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
| >PRK05561 DNA topoisomerase IV subunit A; Validated | Back alignment and domain information |
|---|
| >TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial | Back alignment and domain information |
|---|
| >COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF03989 DNA_gyraseA_C: DNA gyrase C-terminal domain, beta-propeller; InterPro: IPR006691 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >PF03989 DNA_gyraseA_C: DNA gyrase C-terminal domain, beta-propeller; InterPro: IPR006691 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >PRK09631 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >PRK12758 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 941 | ||||
| 4ddq_A | 502 | Structural Plasticity Of The Bacillus Subtilis Gyra | 1e-151 | ||
| 2xco_A | 726 | The 3.1a Crystal Structure Of The Catalytic Core (B | 1e-139 | ||
| 2xcr_B | 726 | The 3.5a Crystal Structure Of The Catalytic Core (B | 1e-139 | ||
| 2xcs_B | 692 | The 2.1a Crystal Structure Of S. Aureus Gyrase Comp | 1e-139 | ||
| 2y3p_A | 522 | Crystal Structure Of N-Terminal Domain Of Gyra With | 1e-137 | ||
| 3nuh_A | 525 | A Domain Insertion In E. Coli Gyrb Adopts A Novel F | 1e-130 | ||
| 1ab4_A | 493 | 59kda Fragment Of Gyrase A From E. Coli Length = 49 | 1e-129 | ||
| 3lpx_A | 500 | Crystal Structure Of Gyra Length = 500 | 1e-127 | ||
| 3ifz_A | 508 | Crystal Structure Of The First Part Of The Mycobact | 1e-123 | ||
| 3ilw_A | 470 | Structure Of Dna Gyrase Subunit A N-Terminal Domain | 1e-116 | ||
| 2inr_A | 514 | Crystal Structure Of A 59 Kda Fragment Of Topoisome | 1e-115 | ||
| 2nov_A | 496 | Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Cr | 1e-114 | ||
| 1zvu_A | 716 | Structure Of The Full-Length E. Coli Parc Subunit L | 5e-97 | ||
| 2xkj_E | 767 | Crystal Structure Of Catalytic Core Of A. Baumannii | 3e-92 | ||
| 2xkk_A | 767 | Crystal Structure Of Moxifloxacin, Dna, And A. Baum | 3e-91 | ||
| 1zi0_A | 307 | A Superhelical Spiral In Escherichia Coli Dna Gyras | 5e-45 | ||
| 3uc1_A | 327 | Mycobacterium Tuberculosis Gyrase Type Iia Topoisom | 8e-35 | ||
| 3l6v_A | 370 | Crystal Structure Of The Xanthomonas Campestris Gyr | 2e-33 | ||
| 1suu_A | 312 | Structure Of Dna Gyrase A C-Terminal Domain Length | 6e-29 | ||
| 3qx3_A | 803 | Human Topoisomerase Iibeta In Complex With Dna And | 1e-15 | ||
| 4fm9_A | 763 | Human Topoisomerase Ii Alpha Bound To Dna Length = | 8e-13 | ||
| 4ely_A | 156 | Ccdbvfi:gyra14ec Length = 156 | 3e-12 | ||
| 1wp5_A | 323 | Crystal Structure Of The C-Terminal Domain Of Dna T | 6e-12 | ||
| 1x75_A | 132 | Ccdb:gyra14 Complex Length = 132 | 7e-12 | ||
| 4elz_A | 153 | Ccdbvfi:gyra14vfi Length = 153 | 1e-11 | ||
| 2rgr_A | 759 | Topoisomerase Iia Bound To G-segment Dna Length = 7 | 1e-10 | ||
| 1bgw_A | 793 | Topoisomerase Residues 410-1202 Length = 793 | 1e-10 | ||
| 4gfh_A | 1103 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 | 3e-10 | ||
| 4gfh_F | 1099 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 | 3e-10 | ||
| 3l4k_A | 722 | Topoisomerase Ii-Dna Cleavage Complex, Apo Length = | 3e-10 |
| >pdb|4DDQ|A Chain A, Structural Plasticity Of The Bacillus Subtilis Gyra Homodimer Length = 502 | Back alignment and structure |
|
| >pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 | Back alignment and structure |
| >pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 | Back alignment and structure |
| >pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 | Back alignment and structure |
| >pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 Length = 522 | Back alignment and structure |
| >pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 525 | Back alignment and structure |
| >pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli Length = 493 | Back alignment and structure |
| >pdb|3LPX|A Chain A, Crystal Structure Of Gyra Length = 500 | Back alignment and structure |
| >pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Breakage And Reunion Domain At 2.7 A Resolution Length = 508 | Back alignment and structure |
| >pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain Length = 470 | Back alignment and structure |
| >pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv Subunit A (Grla) From Staphylococcus Aureus Length = 514 | Back alignment and structure |
| >pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal Structure Of A Gram-Positive Quinolone Target Length = 496 | Back alignment and structure |
| >pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit Length = 716 | Back alignment and structure |
| >pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|1ZI0|A Chain A, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C- Terminal Domain Imparts Unidirectional Supercoiling Bias Length = 307 | Back alignment and structure |
| >pdb|3UC1|A Chain A, Mycobacterium Tuberculosis Gyrase Type Iia Topoisomerase C-Terminal Domain Length = 327 | Back alignment and structure |
| >pdb|3L6V|A Chain A, Crystal Structure Of The Xanthomonas Campestris Gyrase A C- Terminal Domain Length = 370 | Back alignment and structure |
| >pdb|1SUU|A Chain A, Structure Of Dna Gyrase A C-Terminal Domain Length = 312 | Back alignment and structure |
| >pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 | Back alignment and structure |
| >pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 | Back alignment and structure |
| >pdb|4ELY|A Chain A, Ccdbvfi:gyra14ec Length = 156 | Back alignment and structure |
| >pdb|1WP5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Dna Topoisomerase Iv Length = 323 | Back alignment and structure |
| >pdb|1X75|A Chain A, Ccdb:gyra14 Complex Length = 132 | Back alignment and structure |
| >pdb|4ELZ|A Chain A, Ccdbvfi:gyra14vfi Length = 153 | Back alignment and structure |
| >pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 | Back alignment and structure |
| >pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli} Length = 716 | Back alignment and structure |
|---|
Score = 916 bits (2369), Expect = 0.0
Identities = 240/727 (33%), Positives = 377/727 (51%), Gaps = 47/727 (6%)
Query: 106 LGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSL 165
+ RALP + DGLKPV RRI++AM ELGL++ FKK AR VG+VLGK+HPHGD+A Y+++
Sbjct: 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60
Query: 166 VRMAQDFSLRYPLIRGHGNFGSIDADPA-AAMRYTECRLEALSEAMLLADIDQDTVNFVP 224
V MAQ FS RYPL+ G GN+G+ D + AAMRYTE RL SE + L+++ Q T ++VP
Sbjct: 61 VLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL-LSELGQGTADWVP 119
Query: 225 NFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQE 284
NFD + +EP +LPARLP +LLNG +GIAVGMAT+IPPHNL E+ ALI P+ TL +
Sbjct: 120 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQ 179
Query: 285 LLEYMPGPDFPTGG-LIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIP 343
LL+ + GPD+PT +I I Y GRG + +R + E V+I +P
Sbjct: 180 LLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE-------DGAVVISALP 232
Query: 344 YQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG-MRIVIELKRG-ADPSIVVNSLYRL 401
+Q + + ++E+IA + NK L + D+RDESD R+VI + D V+N L+
Sbjct: 233 HQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFAT 292
Query: 402 TALQSSFSCNMVGI-LDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEG 460
T L+ S+ N+ I LDG+P L E+L +L FR V RR ++L +V +R HI+EG
Sbjct: 293 TDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEG 352
Query: 461 IMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVD 520
++V N+D VI I+R AL F L+E QA+AIL++ LR L LE K
Sbjct: 353 LLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRG 409
Query: 521 ESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA-DSGQLDDIDII 579
E L ++ +L+ +L+S + + L+++E+ + R S L++ ++ + + D++
Sbjct: 410 EQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDML 469
Query: 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
P++ + + +S+ G+V+ K I + D+ + +++ V++
Sbjct: 470 PSEPVTIVLSQMGWVRSAK--------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVD 521
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699
G Y+ +P G PL L+L G + ++ S+ DQ L+M + GY
Sbjct: 522 STGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLMESD---DQKLLMASDAGY 576
Query: 700 IKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN-DDLVAMASQNGMVILSSCDIIRS 758
+ N + G I L + + D++ +Q G +++ +
Sbjct: 577 GFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 636
Query: 759 LSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGH 818
LS+ +G+ + + + D + + T L
Sbjct: 637 LSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQST---------------LTIHVGKRK 680
Query: 819 GKRVPLS 825
K P
Sbjct: 681 IKLRPEE 687
|
| >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli} Length = 716 | Back alignment and structure |
|---|
| >2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A* Length = 496 | Back alignment and structure |
|---|
| >2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} Length = 514 | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 | Back alignment and structure |
|---|
| >3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A* Length = 470 | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 | Back alignment and structure |
|---|
| >3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A Length = 500 | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 | Back alignment and structure |
|---|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Length = 370 | Back alignment and structure |
|---|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Length = 370 | Back alignment and structure |
|---|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Length = 312 | Back alignment and structure |
|---|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Length = 312 | Back alignment and structure |
|---|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Length = 307 | Back alignment and structure |
|---|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Length = 307 | Back alignment and structure |
|---|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Length = 323 | Back alignment and structure |
|---|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Length = 323 | Back alignment and structure |
|---|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Length = 327 | Back alignment and structure |
|---|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Length = 327 | Back alignment and structure |
|---|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Length = 276 | Back alignment and structure |
|---|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Length = 276 | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 | Back alignment and structure |
|---|
| >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli} Length = 256 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 941 | |||
| 1zvu_A | 716 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 100.0 | |
| 2inr_A | 514 | DNA topoisomerase 4 subunit A; topoisomerase II fo | 100.0 | |
| 2nov_A | 496 | DNA topoisomerase 4 subunit A; protein, PARC, TOPO | 100.0 | |
| 3ilw_A | 470 | DNA gyrase subunit A; DNA topology, topoisomerase, | 100.0 | |
| 3lpx_A | 500 | GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-b | 100.0 | |
| 2xcs_B | 692 | DNA gyrase subunit B, DNA gyrase subunit A; isomer | 100.0 | |
| 2xkj_E | 767 | Topoisomerase IV; type IIA topoisomerase; 2.20A {A | 100.0 | |
| 3l4j_A | 757 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 3qx3_A | 803 | DNA topoisomerase 2-beta; toprim domain, winged-he | 100.0 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 100.0 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 100.0 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 100.0 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 100.0 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 100.0 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 100.0 | |
| 1zvt_A | 256 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 100.0 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 100.0 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 100.0 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 100.0 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 100.0 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 99.98 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 99.98 | |
| 1zvt_A | 256 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 99.96 | |
| 3ku8_A | 156 | GYRA14, DNA gyrase subunit A; alpha+beta, SH3 doma | 99.92 | |
| 1zvu_A | 716 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 99.89 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 93.25 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 92.5 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 88.53 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 87.47 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 85.71 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 85.55 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 83.65 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 82.89 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 82.54 |
| >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-185 Score=1621.21 Aligned_cols=685 Identities=35% Similarity=0.583 Sum_probs=626.6
Q ss_pred cccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHHhhhcccCceeeeecCCCC
Q 002290 106 LGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNF 185 (941)
Q Consensus 106 ~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~mAQ~f~~~~pLl~~~GnF 185 (941)
++|||||+|||||||||||||+|+++|++++++|+||||+||+|||+||||||+|+|||||||||+||||||||||||||
T Consensus 1 ~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~SiydaiVrmAQ~fs~r~pLldg~GNF 80 (716)
T 1zvu_A 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 80 (716)
T ss_dssp -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC
T ss_pred CCCCCCchhcCCChHHHHHHHHHhhhCCcCCCCceeeHHHHHHHHHhcCCccHHHHHHHHHHHhhcccccceeeecCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcc-cccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeecCCcccccceecCCCCCCh
Q 002290 186 GSIDADPA-AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264 (941)
Q Consensus 186 Gs~~gd~a-AA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvNG~~GIavG~aT~IPphN~ 264 (941)
||++||+| |||||||||||++|+.| +.|+|+++|+|+|||||+.+||+||||+|||||||||+|||||||||||||||
T Consensus 81 GS~dgd~a~AA~RYte~rLs~ia~~l-l~~~d~~tvdf~~n~Dg~~~EP~vlp~~iP~lLvNGa~GIavGmaT~IPphNl 159 (716)
T 1zvu_A 81 GAPDDPKSFAAMRYTESRLSKYSELL-LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 159 (716)
T ss_dssp SSSSSCCCTTSSCGGGEEECGGGHHH-HTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCH
T ss_pred CCCCCCccccccCceEEcchHHHHHH-HhhcCccccccccCCCCCcCCchhccccccHHHHcCCCccccceecCCCCCCH
Confidence 99999999 99999999999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEec-chhhHhhhhcCCcEEEEEEEEEEEEecCCCCcceEEEEeec
Q 002290 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMG-NLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIP 343 (941)
Q Consensus 265 ~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~-~~g~~~~y~tg~G~~~~rg~~~ie~~~~~~~~~~i~ItElP 343 (941)
+|||+||+++|+||+++++||++++|||||||||+|.+ .+|+.++|+||+|+|++||+|++++ ++|+|||||
T Consensus 160 ~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptgG~I~~~~~gI~~aY~tGrG~i~~rg~~~ie~-------~~ivITElP 232 (716)
T 1zvu_A 160 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-------GAVVISALP 232 (716)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET-------TEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCceEEecCchHHHHHhhcCCceEEEEEEEEEEC-------CEEEEEeCC
Confidence 99999999999999999999999999999999999985 8999999999999999999999972 579999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCccccccccCCC-CceEEEEEeCC-CCChHHHHHHHHhhcccceeeeeeEEEE-ECCcc
Q 002290 344 YQTNKSMLVEKIAELVENKTLDGISDIRDESDR-SGMRIVIELKR-GADPSIVVNSLYRLTALQSSFSCNMVGI-LDGQP 420 (941)
Q Consensus 344 ~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~-~girivi~lk~-~~~~~~~~~~L~k~t~Lq~s~~~N~~~l-~~~~p 420 (941)
|++|+++|+|+|++++++|++++|+|+||||++ +|+||+|++|+ +++++.++++|||+|+||++|++||++| .||+|
T Consensus 233 y~v~~~~lie~I~~l~~~kki~~I~d~rDes~~~~gvrivI~lk~~~~~~~~vl~~L~k~T~Lq~sf~~Nm~~l~~~g~p 312 (716)
T 1zvu_A 233 HQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP 312 (716)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCE
T ss_pred CCCCHHHHHHHHHHHHhcCCCccccchhhccCCCCcEEEEEEECccCCCHHHHHHHHHHhcchhheeeceeEEEccCCee
Confidence 999999999999999999999999999999998 59999999998 6999999999999999999999999999 69999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHhCCCHHHHH
Q 002290 421 KQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500 (941)
Q Consensus 421 k~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f~~s~~qae 500 (941)
+++|+++||++|++||+++|+||++|+|+|+++|+|+|+|+++++++||+||++||.|+++ ++.|++.|++|+.||+
T Consensus 313 ~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~---k~~L~~~f~lse~QA~ 389 (716)
T 1zvu_A 313 AVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAE 389 (716)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH---HHHHHHSTTCCTTHHH
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch---HHHHHHhcCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999984 7899999999999999
Q ss_pred HHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcccccccC-CCCCCCccccc
Q 002290 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA-DSGQLDDIDII 579 (941)
Q Consensus 501 aIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT~I~~~-~~~~~~~~dlI 579 (941)
|||+|||||||++|++||++|+++|+++|++|+++|+|+++++++|++||.+++++||+||||+|... +..+++.+|+|
T Consensus 390 aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd~RRT~I~~~~~~~~~~~edli 469 (716)
T 1zvu_A 390 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDML 469 (716)
T ss_dssp HHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSCBCCCCCCCCCCSSTTS
T ss_pred HHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccccccccccchhcchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999852 33578889999
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a 659 (941)
++++++|++|++|||||+.. .+.|..+++++++|.+.+++.|++||+|+|||+.|++|++++|+||+. ++
T Consensus 470 ~~e~v~v~ls~~GyiKr~~g--------~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~--~~ 539 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKG--------HDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RG 539 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC-----------------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCC--C-
T ss_pred CCceEEEEEecCCeEeccCC--------CCcCccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccc--cc
Confidence 99999999999999999632 223447788999999999999999999999999999999999999997 58
Q ss_pred cCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEe-cCCCe
Q 002290 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDL 738 (941)
Q Consensus 660 ~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~-~~~d~ 738 (941)
+|+|++++++|++||+|++++++. ++.+++++|++|++||+++++|...+++|+.+++|++||+|+++..+ +++++
T Consensus 540 ~G~~i~~ll~l~~~e~i~~~~~~~---~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~ 616 (716)
T 1zvu_A 540 QGEPLTGKLTLPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 616 (716)
T ss_dssp --CBSTTTSCCCTTCCEEEEECCC---TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCE
T ss_pred cCeeHHhccCCCCCCeEEEEEEec---CCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCE
Confidence 999999999999999999999886 57799999999999999999999998899999999999999999888 67889
Q ss_pred EEEEecCCcEEEEecccccccCCCCCCeeeeeCC------CCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEE
Q 002290 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK------DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLF 812 (941)
Q Consensus 739 Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~------~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll 812 (941)
|+++|++|+++||+++++|.+|| ++||++|+|+ +||+|+++.++.+ +..+++
T Consensus 617 v~l~t~~g~~lrf~~~~v~~~gr-~~GV~~i~l~~~~~k~~~d~v~~~~~~~~---------------------~~~l~~ 674 (716)
T 1zvu_A 617 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP---------------------QSTLTI 674 (716)
T ss_dssp EEEEETTSEEEEEESTTSCBCSS-BSCEESSCCCHHHHHTTSSCEEEEEEECS---------------------SCCEEE
T ss_pred EEEEeCCCeEEEEEHHHCCccCc-ccCeEEEEecccccCCCCCEEEEEEEecC---------------------CCeEEE
Confidence 99999999999999999999999 9999999999 9999999987743 245777
Q ss_pred EecCcc--EEEEeCCCccccCCCccee
Q 002290 813 VSESGH--GKRVPLSSFRKLPLNRVGL 837 (941)
Q Consensus 813 vTe~G~--gKR~~lse~~~~~R~~kGv 837 (941)
++.+|+ +|+.++++|+ ++|+++|+
T Consensus 675 ~~gk~~~~~k~~~~~~~~-~~Rg~~G~ 700 (716)
T 1zvu_A 675 HVGKRKIKLRPEELQKVT-GERGRRGT 700 (716)
T ss_dssp EETTEEEEECHHHHTTSB-CCTTSCCE
T ss_pred EECCcccccccchhhHhc-cCCCCCCC
Confidence 777776 6677999997 88999998
|
| >2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A* | Back alignment and structure |
|---|
| >3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A* | Back alignment and structure |
|---|
| >3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A* | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
| >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
| >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 941 | ||||
| d1ab4a_ | 493 | e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxI | 1e-177 | |
| d1bjta_ | 760 | e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra | 7e-70 | |
| d1suua_ | 304 | b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lym | 4e-47 | |
| d1suua_ | 304 | b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lym | 1e-11 | |
| d1wp5a_ | 323 | b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C | 2e-39 | |
| d1wp5a_ | 323 | b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C | 9e-10 | |
| d1x75a1 | 132 | e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia col | 5e-22 |
| >d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Length = 493 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA Gyrase A species: Escherichia coli [TaxId: 562]
Score = 520 bits (1340), Expect = e-177
Identities = 239/491 (48%), Positives = 340/491 (69%), Gaps = 36/491 (7%)
Query: 107 GRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLV 166
GRALPDVRDGLKPVHRR+L+AM+ LG K +KK ARVVG+V+GK+HPHGD+AVYD++V
Sbjct: 2 GRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIV 61
Query: 167 RMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNF 226
RMAQ FSLRY L+ G GNFGSID D AAAMRYTE RL ++ + +AD++++TV+FV N+
Sbjct: 62 RMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL-MADLEKETVDFVDNY 120
Query: 227 DESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELL 286
D ++K P ++P ++P LL+NG+SGIAVGMATNIPPHNL E+++ A I + + +++ L+
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLM 180
Query: 287 EYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQT 346
E++PGPDFPT +I G GI +AYRTGRG++ +R + EVE +D+K+ R +I+ EIPYQ
Sbjct: 181 EHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE-VDAKTGRETIIVHEIPYQV 239
Query: 347 NKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQS 406
NK+ L+EKIAELV+ K ++GIS +RDESD+ GMRIVIE+KR A +V+N+LY T LQ
Sbjct: 240 NKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQV 299
Query: 407 SFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLD 466
SF NMV + GQPK M LK+++ AF+ R VV RR F+L + ++R HI+E + V L
Sbjct: 300 SFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA 359
Query: 467 NLDRVIRIVREAPSNSTASAAL----------------------------------KDEF 492
N+D +I ++R AP+ + A AL +
Sbjct: 360 NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLY 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
L+E+QA AILD+ L++LT LE +K +DE K L++QI +L +L S ++++I +E+
Sbjct: 420 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 479
Query: 553 LKNRFSTPRLS 563
++ +F R +
Sbjct: 480 VREQFGDKRRT 490
|
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 | Back information, alignment and structure |
|---|
| >d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 304 | Back information, alignment and structure |
|---|
| >d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 304 | Back information, alignment and structure |
|---|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 323 | Back information, alignment and structure |
|---|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 323 | Back information, alignment and structure |
|---|
| >d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 941 | |||
| d1ab4a_ | 493 | DNA Gyrase A {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1bjta_ | 760 | DNA topoisomerase II, C-terminal fragment (residue | 100.0 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 100.0 | |
| d1suua_ | 304 | DNA gyrase A C-terminal domain {Lyme disease spiro | 100.0 | |
| d1suua_ | 304 | DNA gyrase A C-terminal domain {Lyme disease spiro | 99.96 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 99.96 | |
| d1x75a1 | 132 | DNA Gyrase A {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 93.52 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 93.33 |
| >d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA Gyrase A species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-142 Score=1245.64 Aligned_cols=458 Identities=52% Similarity=0.883 Sum_probs=439.1
Q ss_pred cccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHHhhhcccCceeeeecCCCC
Q 002290 106 LGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNF 185 (941)
Q Consensus 106 ~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~mAQ~f~~~~pLl~~~GnF 185 (941)
++|||||++||||||||||||+||++|+.++++|+||||+||+|||+||||||+|+|+|||+|||+|+||+|||+|||||
T Consensus 1 v~RaiP~~~DGlKp~qRril~~~~~~~l~~~~~~~k~a~~~g~v~~~yHpHGd~s~~~~iv~maq~~~~~~~ll~~~G~F 80 (493)
T d1ab4a_ 1 VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 80 (493)
T ss_dssp CTTTSCBTTTCCCHHHHHHHHHHHHTTCCSSSCCEEHHHHHHHHHHHTCCSCHHHHHHHHHHTTCTTTCSSCSEEEESCC
T ss_pred CCCCCCccccCCcHHHHHHHHHHHhcCCCCCCCceeeeeeHHHHHhccCCCcHHHHHHHHHHHHHhhhhccccccCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeecCCcccccceecCCCCCChH
Q 002290 186 GSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265 (941)
Q Consensus 186 Gs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvNG~~GIavG~aT~IPphN~~ 265 (941)
||+|||+||||||||||||++|+.|| .++|+++|+|++||||+.+||+||||+|||||||||+||||||||+||||||.
T Consensus 81 Gs~~g~~~Aa~RYi~trLs~~~~~l~-~~~d~~~~~~~~n~Dg~~~EP~~~p~~iP~lLvNG~~GIavG~sT~IP~hN~~ 159 (493)
T d1ab4a_ 81 GSIDGDSAAAMRYTEIRLAKIAHELM-ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 159 (493)
T ss_dssp CCTTCCCCCCTTTCEEEECTTHHHHS-TTTTTTCSCEEECTTSSSEEESSCCCSSCHHHHHCEEECCSSCCEEECCCCHH
T ss_pred CCCCCCCCcccchHHhhhhHHHHHHH-hhcccccccCccCCCCCcccceeecccchhHHHhhcchhhhhhhhccCCCCHH
Confidence 99999999999999999999999974 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEEEEEEecCCCCcceEEEEeecCC
Q 002290 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQ 345 (941)
Q Consensus 266 evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~~ie~~~~~~~~~~i~ItElP~~ 345 (941)
|||+||+++|+++++++++|++++|||||||||.|.|+.|+.++|++|+|++.+||+++++... +.++++|+||||||+
T Consensus 160 eii~~~~~~i~~~~~~~~~L~~~ipgPdfP~g~~~~g~~~~~~~y~~G~g~i~~r~~~~ie~~~-k~~~~tI~ITELP~~ 238 (493)
T d1ab4a_ 160 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA-KTGRETIIVHEIPYQ 238 (493)
T ss_dssp HHHHHHHHHHHCTTCCHHHHTTTCCSCCCSSCCEECCSHHHHHHHHHSEEEEEEECEEEEEC-------CEEEEEECCTT
T ss_pred HHHHHHHhhhccccccHHHHHhcCCCCCCCCcceEECcccHHHHHhcCCceEEEEeeEEEEeec-cCCceEEEEEecCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998532 456789999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcccceeeeeeEEEEECCcccccCH
Q 002290 346 TNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGL 425 (941)
Q Consensus 346 ~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~Lq~s~~~N~~~l~~~~pk~~~l 425 (941)
+||++|+|+|++++++|++++|+|++|+||++|+||+|+++++.+++.++++|||+|+||++|++||++++|+.|+++|+
T Consensus 239 ~~t~~~~E~i~~lv~~kki~~I~d~rDes~~~~vr~vI~lk~~~~~~~~~~~L~k~t~L~ss~s~n~~~l~d~~pk~~~l 318 (493)
T d1ab4a_ 239 VNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNL 318 (493)
T ss_dssp CCHHHHHHHHHHHHTTTCSSCCCCEEECCCSSSCCEEEC------CHHHHHHHHHHSTTEEEEEEECEEEETTEEEECCH
T ss_pred CCHHHHHHHHHHHHHcCCCCcccccccccCCcceEEEEecCCcchHHHHHHHHHHhhhhhhccceeeeeecCCeeeeccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHH--------------
Q 002290 426 KEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE-------------- 491 (941)
Q Consensus 426 ~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~-------------- 491 (941)
+|||++|++||+++|+||++|+|+++++|+|+++|+++|+.++|++|++||+++++++|+..|++.
T Consensus 319 ~eIL~~f~~~R~e~~~kR~~y~L~kle~rl~iL~g~~~~i~~IdevI~iIr~s~~~~~ak~~L~~~~~~~~~~~~~~~~~ 398 (493)
T d1ab4a_ 319 KDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 398 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHSCEECCGGGTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccccChHHHHHHHHhcccccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred --------------------hCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002290 492 --------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551 (941)
Q Consensus 492 --------------------f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~ 551 (941)
|.||+.||+|||+||||+||++|++||++|+++|++++++|+++|+|++.+|++|++||.
T Consensus 399 ~~~~~~~e~~~~~~~~~~~~y~lse~Qa~~IL~MrL~~LT~le~~kL~~E~~~l~~ei~eL~~iL~s~~~l~~~i~~EL~ 478 (493)
T d1ab4a_ 399 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 478 (493)
T ss_dssp --CCCSCTTSCTTSEESSSEEECCHHHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccccccccccchhccccCCcccCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccc
Q 002290 552 ELKNRFSTPRLSML 565 (941)
Q Consensus 552 elk~kfg~~RRT~I 565 (941)
+++++||+||||+|
T Consensus 479 ~lk~kfg~~RrT~I 492 (493)
T d1ab4a_ 479 LVREQFGDKRRTEI 492 (493)
T ss_dssp HHHHHHCCCCCSEE
T ss_pred HHHHHhCCCCCCCC
Confidence 99999999999998
|
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
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| >d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
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| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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