Citrus Sinensis ID: 002333

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-----

MAATIAKRQGLGRYSDDKMRRIRGTSDISWQRRGVSKVLDRENMKDIAQEKEKERHVLQASSGAKKPRMNQDFGFSDSTRIPKKPRSALNRKVSYENGDEDEVLDKRTSLEVEMSEELDYDAEEIALIRIRERRRSRRLEPDGAMIKTNPHKGRQKIDSANSSSCSSSSTSSGSSDSVLKSNSNNNGRCTARNVKEKELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

cccHHcccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccccccHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHccccccccccccEEEEEcccccEEEccHHHHHccccccccccccccccccccccccccHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccEEEEcccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEcccccccccccccccEEEEcccccccHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

cHHHHHHHccccccccccccEEEEEEcHHEEcccccccccccccEEEEcccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHccEEEEccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEEEEcccccccccHHHHHHHcccccHHHHHHHcccccccccccHEEcccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEccccccccEEcccccccEEEccccccccccHHHHHHHHHHHcccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEcHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEEcHHHccccccccHHHHHHHHHHHcccccccccccEEEEEcccccEEEccHHHHHccccccccccccccEEEEcccccccHHHHHHccHHHHHHHHccccccccccccccEEEEEccccccccccccccEEEEEcccccccccccccccEEcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccHccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccEHHHHcHccHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEEcccccHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

MAATIAKrqglgrysddkmrrirgtsdiswqrrgvskvldreNMKDIAQEKEKERHVLqassgakkprmnqdfgfsdstripkkprsalnrkvsyengdedevldkRTSLEVEMSEELDYDAEEIALIRIRERRrsrrlepdgamiktnphkgrqkidsanssscsssstssgssdsvlksnsnnngrctarNVKEKELERikchqcmkserkyvvpcgkcrtkvyCIQCIKQwypkmseldvaeicpfcrrncncsvclhtsgfietskinmtdceKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRvhsskvgvsetlcgndervycnhCATSIidlhrscpkcsyelcLTCCKEICEGRLSGRAEMKFQYVnrgygymqggdplpesclhqtpdvhvepsvmwsaddngtiscpptemggcgdcVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKaasregsddnllycpdstkiqEDEELFRFQKhwikgepvIVRNVLdkvtglswepMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFfkgytqgrtydnfwpemlklkdwppsdkfedlmprhcdefisalpfqeysdpraGILNLAVklpsgvlkpdlgpktyIAYGVAeelgrgdsvtklhCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVqdgmdesieepnsdnnkedtdvseindsellpsgirgefkmsrdemqgtaftcphsegtmvesggALWDIFRRQDVPKLEAYLRKHFKEFrhvycspveqvihpihdqcfyLSSEHKKKLkeefgvepwtfeqklgeavfipagcphqvrnlkscTKVAvdfvspenvDECLRLTKEFRllpknhrarEDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

maatiakrqglgrysddkmrrirgtsdiswqrrgvskvldreNMKDIAqekekerhvlqassgakkprmnqdfgfsdstripkkprsalnrkvsyengdedevldkrtslevemseeldydaeeialirirerrrsrrlepdgamiktnphkgrqkidsanssscsssstssgssdsvlksnsnnngrctarnvkekelerikchqcmkserkyvvpcgkcrTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLIldnkltnlrqnraetgtDMLCKAAsregsddnllyCPDSTKIQEDEELFRFQkhwikgepvivRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKEnlvqdgmdesieepnsdnnkedtdvseindsellpsgIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKefrllpknhraredkLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

MAATIAKRQGLGRYSDDKMRRIRGTSDISWQRRGVSKVLDRENMKDIAQEKEKERHVLQASSGAKKPRMNQDFGFSDSTRIPKKPRSALNRKVSYENGDEDEVLDKRTSLEVEMSEELDYDaeeialirirerrrsrrlePDGAMIKTNPHKGRQKIDsanssscsssstssgssdsvlksnsnnnGRCTARNVKEKELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIlthteevllteeQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYlssehkkklkeeFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

****************************************************************************************************************************IALIR*********************************************************************LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQ*********L***********NLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLL*****************************************************************************C****GTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIF*

***********************************************************************************************************************************************************************************************************CHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEI**********SSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCK*****************VNRG****************************WSADDNGTISCPPT*****G**VLELTRILP*******************************************EGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHR************************************************************************GGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

**********LGRYSDDKMRRIRGTSDISWQRRGVSKVLDRENMKDIAQEKEKERHVLQASSGAKKPRMNQDFGFSDSTRIPKKPRSALNRKVSYENGDEDEVLDKRTSLEVEMSEELDYDAEEIALIRIRERRRSRRLEPDGAMIKTN*********************************SNNNGRCTARNVKEKELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENV*********EVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMD*****************SEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

****************DKMRRIRGTSDISWQRRGVSKVLDRENMKDIA******************************************************************************L*R************************************************************************IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNR***************************VMWS*DDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRA***TDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDL*******************************************************************SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		935	2.2.26 [Sep-21-2011]
Q5ZIX8		1325	Lysine-specific demethyla	yes	no	0.392	0.276	0.338	6e-55
Q9Y4C1		1321	Lysine-specific demethyla	yes	no	0.396	0.280	0.334	1e-53
Q6IRB8		1331	Lysine-specific demethyla	N/A	no	0.370	0.259	0.337	1e-50
Q5HZN1		1334	Lysine-specific demethyla	N/A	no	0.370	0.259	0.337	4e-50
Q6PCM1		1323	Lysine-specific demethyla	yes	no	0.398	0.281	0.313	4e-46
Q63679		1214	Lysine-specific demethyla	yes	no	0.396	0.305	0.316	5e-46
Q7LBC6		1761	Lysine-specific demethyla	no	no	0.137	0.073	0.518	3e-29
Q6ZPY7		1562	Lysine-specific demethyla	no	no	0.137	0.082	0.518	1e-28
P97609		1181	Protein hairless OS=Rattu	no	no	0.325	0.257	0.282	9e-23
O43593		1189	Protein hairless OS=Homo	no	no	0.310	0.243	0.256	1e-20

>sp\|Q5ZIX8\|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1	Back alignment and function desciption

 Score =  216 bits (550), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 161/476 (33%), Positives = 219/476 (46%), Gaps = 109/476 (22%)

Query: 457  ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 503
            ILD+   +L QNR  T TDM      L    +  G D       DN L C      + + 
Sbjct: 909  ILDDIFASLVQNR--TVTDMPKKPQGLTIKPTIMGFDTPHYWLCDNRLLCLQDPNNESNW 966

Query: 504  ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 563
             +FR  + W +G+PV+V  V  K+    W P        E+   E   +  EV  ++C  
Sbjct: 967  NVFR--ECWKQGQPVMVSGVHHKLNADLWRP--------ESFRKEFGQQ--EVDLVNC-- 1012

Query: 564  SCEVEISTRQFFKGYTQGRTYDNFW------------PEMLKLKDWPPSDKFEDLMPRHC 611
                   T +   G T G  +D F             P +LKLKDWPP + F D+MP   
Sbjct: 1013 ------RTNEIITGATVGDFWDGFEDISSRLRTEEGEPMVLKLKDWPPGEDFRDMMPSRF 1066

Query: 612  DEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC 671
            D+ +  +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH 
Sbjct: 1067 DDLMKNIPLPEYTR-RGGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHL 1125

Query: 672  DMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKE 731
            D+SDA N++ +             + + + +   + LK   +QDG               
Sbjct: 1126 DVSDAANVMVYV-----------GIPKGQADQEEEVLKT--IQDG--------------- 1157

Query: 732  DTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPK 791
            D+D   I             F  SR                  E  GALW I+  +D  K
Sbjct: 1158 DSDELTIK-----------RFTESR------------------EKPGALWHIYAAKDTEK 1188

Query: 792  LEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEA 851
            +  +L+K  +E      +PV+    PIHDQ +YL    +K+L +E+GV+ W   Q LG+ 
Sbjct: 1189 IREFLKKVAEE--QGQENPVDH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDV 1244

Query: 852  VFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEV 907
            VFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L   H   EDKL+V
Sbjct: 1245 VFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQV 1300

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Preferentially demethylates mono- and dimethylated H3 'Lys-9' residue, with a preference for dimethylated residue, while it has weak or no activity on trimethylated H3 'Lys-9'. Demethylation of Lys residue generates formaldehyde and succinate.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q9Y4C1\|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4	Back alignment and function description

>sp\|Q6IRB8\|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2 SV=1	Back alignment and function description

>sp\|Q5HZN1\|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2 SV=1	Back alignment and function description

>sp\|Q6PCM1\|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1	Back alignment and function description

>sp\|Q63679\|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1	Back alignment and function description

>sp\|Q7LBC6\|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2	Back alignment and function description

>sp\|Q6ZPY7\|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2	Back alignment and function description

>sp\|P97609\|HAIR_RAT Protein hairless OS=Rattus norvegicus GN=Hr PE=2 SV=2	Back alignment and function description

>sp\|O43593\|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		935
255554791		1122	conserved hypothetical protein [Ricinus	0.774	0.645	0.662	0.0
359483388		864	PREDICTED: uncharacterized protein LOC10	0.814	0.881	0.598	0.0
147800953		1016	hypothetical protein VITISV_038746 [Viti	0.813	0.749	0.604	0.0
224118074		693	predicted protein [Populus trichocarpa]	0.706	0.953	0.640	0.0
356564476		843	PREDICTED: uncharacterized protein LOC10	0.721	0.800	0.625	0.0
356520089		843	PREDICTED: uncharacterized protein LOC10	0.708	0.785	0.628	0.0
224115858		700	predicted protein [Populus trichocarpa]	0.713	0.952	0.641	0.0
356557939		1043	PREDICTED: uncharacterized protein LOC10	0.733	0.657	0.617	0.0
357480367		870	Lysine-specific demethylase 3A-B [Medica	0.752	0.809	0.605	0.0
186478394		875	Transcription factor jumonji (jmjC) doma	0.737	0.788	0.591	0.0

>gi\|255554791\|ref\|XP_002518433.1\| conserved hypothetical protein [Ricinus communis] gi\|223542278\|gb\|EEF43820.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1018 bits (2633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/738 (66%), Positives = 589/738 (79%), Gaps = 14/738 (1%)

Query: 179  LKSNSNNNGRCTARNVKEKELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238
            +KS+ ++N  C  RNVK K   R KCHQCMK ERK VVPC KC+ K++C+QCIK+WYP+M
Sbjct: 375  VKSDGSSNSTCATRNVKAKTEARPKCHQCMKYERKIVVPCRKCKCKMFCVQCIKRWYPEM 434

Query: 239  SELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICE 298
            +E ++AE CPFCRRNCNC++CLH+SG I+TSK ++TD EKV+HL+YL+ S+LPF+ QICE
Sbjct: 435  TEEEIAEECPFCRRNCNCNICLHSSGLIKTSKRDITDREKVQHLQYLIKSMLPFLEQICE 494

Query: 299  EQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTC 358
            EQT E++ EASIQ    S   ++E  C NDERVYCNHCATSI+D HRSCPKC+YELCL C
Sbjct: 495  EQTCEMQIEASIQ---GSSPEIAENFCNNDERVYCNHCATSIVDFHRSCPKCAYELCLGC 551

Query: 359  CKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSV-MWSADDNGT 417
            CKEI EG LS  AE++  YVNRGY YM GGDPLP  C  +  D  +EP V +W+A+++G+
Sbjct: 552  CKEIREGSLSSHAEIELHYVNRGYDYMHGGDPLP--CDSKNLDDQIEPLVTLWNANNDGS 609

Query: 418  ISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDML 477
            ISC P EMGGCGD +LEL RILP  WIS+L  + R+L+ + DN+ T+L  N +E G+D L
Sbjct: 610  ISCAPKEMGGCGDNLLELKRILPMGWISELIWKGRELLKLFDNEKTSLMCNYSEPGSDTL 669

Query: 478  CKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVM 537
             KAASREGS+DN L+CP    IQ D+EL RFQKHW+KGEPVIVR+ L+  T LSWEPMVM
Sbjct: 670  RKAASREGSEDNYLFCPALNGIQADQELLRFQKHWLKGEPVIVRDTLEVTTHLSWEPMVM 729

Query: 538  WRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDW 597
            WRALCENVD E ++KMSEVKAIDCLASC+VEI+TRQFFKGYT GRTY+NFWPEMLKLKDW
Sbjct: 730  WRALCENVDLETNAKMSEVKAIDCLASCQVEINTRQFFKGYTGGRTYENFWPEMLKLKDW 789

Query: 598  PPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVA 657
            PPSDKFEDL+PRHCDEFISALPFQEYSDP+AGILN+AVK P G+LKPDLGPKTYIAYG  
Sbjct: 790  PPSDKFEDLLPRHCDEFISALPFQEYSDPKAGILNIAVKFPPGLLKPDLGPKTYIAYGTK 849

Query: 658  EELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGM 717
            EELGRGDSVTKLHCDMSDAVNILTH  EV L+EEQ + +E+LK +H AQD KE L +D +
Sbjct: 850  EELGRGDSVTKLHCDMSDAVNILTHAVEVALSEEQSTCIEQLKMKHSAQDEKEYLERDKV 909

Query: 718  DESIEEPNS---DNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMV 774
            +  + E      D+  ED D+ +I ++E   S +  +     +E++G   T   +     
Sbjct: 910  NSHLIEQLDECIDSLSEDMDLLKIRETEKHSSALETD-----NELRGDTPTDESTGAATA 964

Query: 775  ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLK 834
             S GALWDIFRR+DVPKLE YLRK+  EFRH YCSPVE+V+HPIHDQCFYL+ EHK+KLK
Sbjct: 965  GSSGALWDIFRREDVPKLEEYLRKYHMEFRHTYCSPVEKVVHPIHDQCFYLTLEHKRKLK 1024

Query: 835  EEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLL 894
            EE+GVEPWTFEQ++GEA+FIPAGCPHQVRNLKSCTKVAVDFVSPEN+ ECL LT+EFR L
Sbjct: 1025 EEYGVEPWTFEQRVGEAIFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLLLTEEFRQL 1084

Query: 895  PKNHRAREDKLEVYLVFI 912
            PKNHRAREDKLE+  + +
Sbjct: 1085 PKNHRAREDKLEIKKMIV 1102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359483388\|ref\|XP_002264179.2\| PREDICTED: uncharacterized protein LOC100250303 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147800953\|emb\|CAN60121.1\| hypothetical protein VITISV_038746 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224118074\|ref\|XP_002331551.1\| predicted protein [Populus trichocarpa] gi\|222873775\|gb\|EEF10906.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356564476\|ref\|XP_003550480.1\| PREDICTED: uncharacterized protein LOC100806419 [Glycine max]	Back alignment and taxonomy information

>gi\|356520089\|ref\|XP_003528698.1\| PREDICTED: uncharacterized protein LOC100797860 [Glycine max]	Back alignment and taxonomy information

>gi\|224115858\|ref\|XP_002317142.1\| predicted protein [Populus trichocarpa] gi\|222860207\|gb\|EEE97754.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356557939\|ref\|XP_003547267.1\| PREDICTED: uncharacterized protein LOC100801772 [Glycine max]	Back alignment and taxonomy information

>gi\|357480367\|ref\|XP_003610469.1\| Lysine-specific demethylase 3A-B [Medicago truncatula] gi\|355511524\|gb\|AES92666.1\| Lysine-specific demethylase 3A-B [Medicago truncatula]	Back alignment and taxonomy information

>gi\|186478394\|ref\|NP_172659.3\| Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi\|225897914\|dbj\|BAH30289.1\| hypothetical protein [Arabidopsis thaliana] gi\|332190699\|gb\|AEE28820.1\| Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		935
TAIR\|locus:2008875		875	AT1G11950 "AT1G11950" [Arabido	0.574	0.613	0.587	1.8e-231
TAIR\|locus:2027109		883	AT1G62310 "AT1G62310" [Arabido	0.568	0.602	0.573	6.1e-229
TAIR\|locus:2125221		840	AT4G00990 "AT4G00990" [Arabido	0.562	0.626	0.414	1.6e-158
TAIR\|locus:2036014		944	AT1G09060 "AT1G09060" [Arabido	0.504	0.5	0.352	1.3e-115
TAIR\|locus:2141221		927	B160 "AT4G21430" [Arabidopsis	0.516	0.521	0.312	7.5e-82
MGI\|MGI:1923356		1562	Kdm3b "KDM3B lysine (K)-specif	0.137	0.082	0.481	9.5e-49
UNIPROTKB\|E1BE97		1759	LOC100848816 "Uncharacterized	0.137	0.073	0.481	1.2e-48
UNIPROTKB\|Q7LBC6		1761	KDM3B "Lysine-specific demethy	0.137	0.073	0.481	1.2e-48
UNIPROTKB\|F1RH75		1766	KDM3B "Uncharacterized protein	0.137	0.073	0.481	2.5e-48
UNIPROTKB\|Q9Y4C1		1321	KDM3A "Lysine-specific demethy	0.137	0.097	0.458	1.2e-47

TAIR\|locus:2008875 AT1G11950 "AT1G11950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1708 (606.3 bits), Expect = 1.8e-231, Sum P(2) = 1.8e-231
 Identities = 317/540 (58%), Positives = 392/540 (72%)

Query:   188 RCTARNVKEKELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEIC 247
             R   R++K    E   CHQC K ER+Y+  C  C  ++YC  CIK+WYP +S  D+ E C
Sbjct:   177 RSMTRSLKANLGELAICHQCSKGERRYLFICTFCEVRLYCFPCIKKWYPHLSTDDILEKC 236

Query:   248 PFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFE 307
             PFCR  CNC  CLH+SG IETSK  +   E+  HLR+L+V++LPF++++C+ Q QEIE E
Sbjct:   237 PFCRGTCNCCTCLHSSGLIETSKRKLDKYERFYHLRFLIVAMLPFLKKLCKAQDQEIETE 296

Query:   308 ASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRL 367
             A +Q   +S+V +SE+LC N+ERV+CNHCATSI+DLHRSCPKCSYELCL CC+EI  G L
Sbjct:   297 AKVQDSMASQVDISESLCSNEERVFCNHCATSIVDLHRSCPKCSYELCLNCCQEIRGGWL 356

Query:   368 SGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGG 427
             S R E + Q+  RG  Y+ G    P S    + D    PS+ W+AD+NG+I C P E+GG
Sbjct:   357 SDRPECQLQFEYRGTRYIHGEAAEPSSS-SVSEDETKTPSIKWNADENGSIRCAPKELGG 415

Query:   428 CGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSD 487
             CGD VLEL RILP  W+SDLE++A   +     K        +   + M  KAASR+GS 
Sbjct:   416 CGDSVLELKRILPVTWMSDLEQKAETFLASYSIKPPMSYCRCSSDMSSMKRKAASRDGSS 475

Query:   488 DNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDS 547
             DN LY PDS  + + EEL  FQ+HW KGEPVIVRN L+   GLSWEPMVMWRALCENVDS
Sbjct:   476 DNYLYSPDSLDVLKQEELLHFQEHWSKGEPVIVRNALNNTAGLSWEPMVMWRALCENVDS 535

Query:   548 EVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLM 607
              +SS MS+VKAIDCLA+CEV+I+T  FF+GY++GRTY+NFWPEMLKLKDWPPSDKFE+L+
Sbjct:   536 AISSNMSDVKAIDCLANCEVKINTLCFFEGYSKGRTYENFWPEMLKLKDWPPSDKFENLL 595

Query:   608 PRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVT 667
             PRHCDEFISALPFQEYSDPR+GILN+A KLP G+LKPDLGPKTY+AYG ++ELGRGDSVT
Sbjct:   596 PRHCDEFISALPFQEYSDPRSGILNIATKLPEGLLKPDLGPKTYVAYGTSDELGRGDSVT 655

Query:   668 KLHCDMSDAVNIXXXXXXXXXXXXQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSD 727
             KLHCDMSDAVNI            Q SA+  LK++H+ Q+ KE   Q+G++E  EE  SD
Sbjct:   656 KLHCDMSDAVNILMHTAEVTLSEEQRSAIADLKQKHKQQNEKELQEQNGLEE--EEVVSD 713

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR\|locus:2027109 AT1G62310 "AT1G62310" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125221 AT4G00990 "AT4G00990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036014 AT1G09060 "AT1G09060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2141221 B160 "AT4G21430" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:1923356 Kdm3b "KDM3B lysine (K)-specific demethylase 3B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BE97 LOC100848816 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7LBC6 KDM3B "Lysine-specific demethylase 3B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RH75 KDM3B "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y4C1 KDM3A "Lysine-specific demethylase 3A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.166.62.1	hypothetical protein (657 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		935
pfam02373		114	pfam02373, JmjC, JmjC domain, hydroxylase	5e-16
smart00558		58	smart00558, JmjC, A domain family that is part of	1e-08
pfam10497		105	pfam10497, zf-4CXXC_R1, Zinc-finger domain of mono	5e-04

>gnl\|CDD\|202224 pfam02373, JmjC, JmjC domain, hydroxylase	Back alignment and domain information

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 28/112 (25%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 765 TCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRK-HFKEFRHVYCSPVEQVIHPIHDQCF 823
           T  H E          +  F    V  +        F++      S       P      
Sbjct: 11  TPWHIE--DQGLYSINYLHFGGPKVWYIIPSEYAEKFEKV----LSKHNGGEQPDL-LLH 63

Query: 824 YLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDF 875
             +    K+L E  G+  + F QK GE VF   G  HQV NL      AV+F
Sbjct: 64  LNTIISPKQLLEN-GIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114

>gnl\|CDD\|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

>gnl\|CDD\|220784 pfam10497, zf-4CXXC_R1, Zinc-finger domain of monoamine-oxidase A repressor R1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		935
KOG1356		889	consensus Putative transcription factor 5qNCA, con	100.0
PF10497		105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	99.8
PF02373		114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	99.49
PF13621		251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	98.95
smart00558		57	JmjC A domain family that is part of the cupin met	96.69
KOG2131		427	consensus Uncharacterized conserved protein, conta	95.88
KOG1356		889	consensus Putative transcription factor 5qNCA, con	95.85
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	95.39
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	94.74
cd02335		49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	94.54
cd02339		45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	94.04
PF00569		46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	93.68
smart00291		44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	93.4
PF07883		71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	92.29
cd02344		45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	92.07
COG1917		131	Uncharacterized conserved protein, contains double	91.94
KOG2130		407	consensus Phosphatidylserine-specific receptor Ptd	91.34
cd02341		48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	91.21
cd02345		49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	90.25
cd02338		49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	89.72
COG0662		127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	89.41
cd02337		41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	86.54
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	85.61
cd02334		49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	84.47
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	84.25
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	82.06
PHA02926		242	zinc finger-like protein; Provisional	81.97
PRK09943		185	DNA-binding transcriptional repressor PuuR; Provis	81.47

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

Probab=100.00  E-value=3.1e-179  Score=1531.21  Aligned_cols=642  Identities=42%  Similarity=0.707  Sum_probs=575.2

Q ss_pred             hhccCCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcccCccccccCCCccccccc--
Q 002333          195 KEKELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKIN--  272 (935)
Q Consensus       195 k~~~g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CNCs~Clr~~g~~~t~k~e--  272 (935)
                      .+-+|-+.+||||.+.....+-+|+.|+ ..||.+|++.||+....++++..|++|+..|||..|....++++|....  
T Consensus       223 ~a~~g~~~mC~~C~~tlfn~hw~C~~C~-~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~  301 (889)
T KOG1356|consen  223 RAVKGIREMCDRCETTLFNIHWRCPRCG-FGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGS  301 (889)
T ss_pred             hcccCcchhhhhhcccccceeEEccccC-CeeeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchh
Confidence            3347889999999999888899999999 5599999999999999999999999999999999999999999998655  


Q ss_pred             --CChhhhHHHHH--HHHHhhhhhhHhhcHHhhhhhHhhhhhcccCCCcccccccccCCCCcccccCccccccccccccC
Q 002333          273 --MTDCEKVEHLR--YLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCP  348 (935)
Q Consensus       273 --is~~~kv~~l~--YLl~~LLP~LKqi~~EQ~~E~EiEAkIqG~~~sei~I~~a~~~~DERvyCDnCkTSI~D~HRSC~  348 (935)
                        .+..++++++.  |.|..++|+|+.++.+|..+.+.||+|||..++. +.+.+...++|++|||+|.|||.|+||+||
T Consensus       302 al~~~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~-~~~~~~~~~~e~~~~~~~~~si~~l~r~cP  380 (889)
T KOG1356|consen  302 ALLDLSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTS-KPPVTQANPEEPLYCDHCATSIGDLKRSCP  380 (889)
T ss_pred             hhhhHHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCC-CccccccCcCCCccccccccchhhccccCC
Confidence              66788889888  9999999999999999999999999999999988 777777788999999999999999999999


Q ss_pred             cCCcccchhchHHhhcCcCCCccccceeeeccCcccccCCCCCCCccCCCCCCCCcCCCcccccCCCCCccCCCCCCCCC
Q 002333          349 KCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGC  428 (935)
Q Consensus       349 ~CsyDLCL~CC~ELR~G~~~g~~~~~~~~~~rg~~y~~g~~~~~~~~~~~~~~~~~~~~~~W~a~~dGSI~CpPke~ggC  428 (935)
                      +|+|++||.||++||+|.+.-..+..+.|.+||..|.||.++...+-.......   +.+   ++++|+|.|-|...+||
T Consensus       381 ~~s~~~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~~~~~---~~~---~~~ng~~r~l~~~~~g~  454 (889)
T KOG1356|consen  381 DSSYAICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSVSVDE---PSS---ANENGSLRDLLLSLAGC  454 (889)
T ss_pred             CccccccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccccCCCCCCC---Ccc---cccccchhhcccccCcc
Confidence            999999999999999998877776688899999999999877543222111111   111   88899999999999999


Q ss_pred             CCcceeccccCCcchHHHHHHHHHHHHHHhcccccccccC-ccccCcccchhccccCCCCCCceecCCCCCcCchhhHHH
Q 002333          429 GDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQN-RAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFR  507 (935)
Q Consensus       429 g~~~L~Lrrifp~~~is~L~~~aee~~~~~~~~~~~~~~C-s~~~~~~~lrkaA~Re~s~dN~LYcP~~~di~~~~~l~h  507 (935)
                      +...|.|+|++|..|.+.++.+||.-+..+-+.... .-| +...+.+.++++|.|+.+.|||||||.+ |..+++||.|
T Consensus       455 ~~~~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l-~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~-d~~~~~n~~~  532 (889)
T KOG1356|consen  455 LDRGLKLKRILPNILDSIIASVVENKLTSKLSKPPL-RLCRSSQDGSGLLLSAASHSWLCDNRLLSLKV-DPLNQNNLKH  532 (889)
T ss_pred             chhhhhhhhcCchHHHHHHHHHHHhhcccccCCchh-hcCccccccccCccccCCCCcCCCCceecCcc-CccchhHHHH
Confidence            999999999999999999999999888775444332 233 2234567788999999999999999999 5444599999


Q ss_pred             HHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhccccCCccCCCC
Q 002333          508 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNF  587 (935)
Q Consensus       508 FQ~hW~kGePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaIDCld~~eVei~i~qFf~Gy~~gr~~~~~  587 (935)
                      ||+||++|||||||||++++++++|+||+|||+|+++.+.-..-.+.++.++||++      ++.+||.||++|+++++|
T Consensus       533 FQEhWkqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g  606 (889)
T KOG1356|consen  533 FQEHWKQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENG  606 (889)
T ss_pred             HHHHHhcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccC
Confidence            99999999999999999999999999999999999987766666677788888887      789999999999999999


Q ss_pred             ccceeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhccccccccCCCCCcc
Q 002333          588 WPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVT  667 (935)
Q Consensus       588 wp~mLKLKDWPps~~F~e~lP~h~~eFi~aLP~~EYT~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~eelGrGDSvT  667 (935)
                      ||+|||||||||+++|+++||+||+|||++|||||||| +.|+||||++||.+|++||||||||||||+++++|||||||
T Consensus       607 ~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtT  685 (889)
T KOG1356|consen  607 WPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTT  685 (889)
T ss_pred             CeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCce
Confidence            99999999999999999999999999999999999999 88999999999999999999999999999999999999999


Q ss_pred             cccccccccchhhhcccccccchHhHHHHHHHHHHHHhhhhhhhhccCCCCccccCCCCCCCCCCCCcccccccccCCCC
Q 002333          668 KLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSG  747 (935)
Q Consensus       668 kLH~DmSDAVNIL~htaev~~~~~q~~~i~kl~~~~~~q~~~e~~~~~~~~~~~~e~~~~~~~~~~d~~~i~~~~~~~s~  747 (935)
                      ||||||||||||||||++++.   +...|+++++++.+++..|+.                           .++     
T Consensus       686 nLH~dvSDaVNILvyv~e~~~---~~~~~~~~~k~~~~~~~de~~---------------------------~~~-----  730 (889)
T KOG1356|consen  686 NLHLDVSDAVNILVYVGEPPG---QIEQIAKVLKKIQEGDLDEIT---------------------------RSR-----  730 (889)
T ss_pred             eeceehhhhhhheeeeccCCc---hHHhHHHHHHhhhhcchhhhh---------------------------hhh-----
Confidence            999999999999999998876   444566666666444322221                           110     


Q ss_pred             cccccccccccccCCccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCH
Q 002333          748 IRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSS  827 (935)
Q Consensus       748 ~~~~~k~~~~~~~g~~~~~~~~~g~~~~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~  827 (935)
                            +.                +..+.+|||||||||||||||||||+||++||+|    ++.+|+||||||+||||.
T Consensus       731 ------~~----------------~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~----~~~~v~hPIhDQS~YLd~  784 (889)
T KOG1356|consen  731 ------IS----------------SVSETPGALWHIFRAQDVPKIREYLRKVCKEQGH----EVPKVHHPIHDQSWYLDR  784 (889)
T ss_pred             ------cc----------------ccccCCcchhhhhhhcchHHHHHHHHHhhHHhcC----CCCcccCCCcccceeccH
Confidence                  00                0136899999999999999999999999999998    789999999999999999


Q ss_pred             HHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCchhccccchhhh
Q 002333          828 EHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEV  907 (935)
Q Consensus       828 ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLeV  907 (935)
                      +||+|||||||||||||+|+||||||||||||||||||+||||||+||||||||.||++||+|||+||++|.||||||||
T Consensus       785 ~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqv  864 (889)
T KOG1356|consen  785 YLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQV  864 (889)
T ss_pred             HHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hheehhh
Q 002333          908 YLVFIKR  914 (935)
Q Consensus       908 kkm~l~~  914 (935)
                      |||+||+
T Consensus       865 K~mi~hA  871 (889)
T KOG1356|consen  865 KNMIYHA  871 (889)
T ss_pred             HHHHHHH
Confidence            9999998

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression	Back alignment and domain information

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []	Back alignment and domain information

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A	Back alignment and domain information

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>cd02335 ZZ_ADA2 Zinc finger, ZZ type	Back alignment and domain information

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type	Back alignment and domain information

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein	Back alignment and domain information

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)	Back alignment and domain information

>cd02344 ZZ_HERC2 Zinc finger, ZZ type	Back alignment and domain information

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type	Back alignment and domain information

>cd02345 ZZ_dah Zinc finger, ZZ type	Back alignment and domain information

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type	Back alignment and domain information

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd02337 ZZ_CBP Zinc finger, ZZ type	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>cd02334 ZZ_dystrophin Zinc finger, ZZ type	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		935
2ypd_A		392	Crystal Structure Of The Jumonji Domain Of Human Ju		3e-17
2ypd_A		392	Crystal Structure Of The Jumonji Domain Of Human Ju		4e-17

>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392

Back alignment and structure

Iteration: 1

Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 14/175 (8%) Query: 508 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 567 F++ W +G+P +V V K+ + +W+A E++ + +++ ++C S Sbjct: 27 FKECWKQGQPAVVSGVHKKMN------ISLWKA--ESISLDFGDHQADL--LNCKDSIIS 76 Query: 568 EISTRQFFKGYTQ-GRTYDNFWPE--MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 624 + ++F+ G+ + + N E +LKLKDWP + F+ +MP ++ + +LP EY Sbjct: 77 NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 136 Query: 625 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 679 +P G NLA LP ++PDLGP+ AYGV T LH ++SD VNI Sbjct: 137 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNI 190

PyMOL of 2ypd

>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		935
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
2xxz_A		332	Lysine-specific demethylase 6B; oxidoreductase, hi	5e-09
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	3e-07
3avr_A		531	Lysine-specific demethylase 6A; cupin superfamily,	1e-06
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	2e-06
3kv9_A		397	JMJC domain-containing histone demethylation prote	4e-06
4ask_A		510	Lysine-specific demethylase 6B; oxidoreductase, KD	1e-05
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	2e-05
2yu1_A		451	JMJC domain-containing histone demethylation PROT;	1e-04
3kv5_D		488	JMJC domain-containing histone demethylation prote	3e-04
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	4e-04
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	5e-04
2gu9_A		113	Tetracenomycin polyketide synthesis protein; X-RAY	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 83.7 bits (206), Expect = 2e-16
 Identities = 107/715 (14%), Positives = 192/715 (26%), Gaps = 214/715 (29%)

Query: 275 DCEKVEH-LRY---LMVSLLPFIRQI-C---EEQTQEIEFEASIQRVHSSKVGVSET--- 323
           D E  EH  +Y   L V    F+    C   ++  + I  +  I  +  SK  VS T   
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 324 ---LCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNR 380
              L    E +        + ++ R     +Y+  ++  K       S    M  +  +R
Sbjct: 68  FWTLLSKQEEMV----QKFVEEVLRI----NYKFLMSPIKTEQRQP-SMMTRMYIEQRDR 118

Query: 381 GYGYMQGGDPLP----------ESCLHQ---TPDVHVEPSVMWSADDNGTISCPPTEMGG 427
            Y   Q                   L +     +V ++          G        + G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----------G--------VLG 160

Query: 428 CGDCVL--------ELTRILPDR--WIS-DLEKEARDLVLILDNKLTNLRQNRAETGTDM 476
            G   +        ++   +  +  W++         ++ +L   L  +  N        
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-------- 212

Query: 477 LCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMV 536
                SR     N+     S +     EL R  K       ++   VL  V         
Sbjct: 213 ---WTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLL---VLLNV----QNAKA 258

Query: 537 MWRAL---CENVDSEVSSKMSEVKAIDCL-ASCEVEISTRQFFKGYTQGRTYDNF--WPE 590
            W A    C+ +   ++++  +V   D L A+    IS        T          + +
Sbjct: 259 -WNAFNLSCKIL---LTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 591 MLKLKDWPPSDKFEDLMPRHCD---EFISALP--FQEYSDPRAGILNLAVKLPSGVLKPD 645
             + +D P         PR      E I      +  +       L   ++    VL+P 
Sbjct: 313 C-RPQDLPREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 646 LGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVER-LKKEHR 704
              K +    V                   + +I T    ++  +   S V   + K H+
Sbjct: 370 EYRKMFDRLSV----------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 705 AQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAF 764
              +++                   KE T    I    L       E K+  +       
Sbjct: 414 YSLVEK-----------------QPKEST--ISIPSIYL-------ELKVKLENEYAL-- 445

Query: 765 TCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQ--C 822
              H                R      ++ Y     K F      P      P  DQ   
Sbjct: 446 ---H----------------RSI----VDHY--NIPKTFDSDDLIP------PYLDQYFY 474

Query: 823 FYLSSEHKKKLK--EEFGVEPWTF------EQKLGEAVFIPAGCPHQVRNLKSCTKVAVD 874
            ++   H K ++  E   +    F      EQK+             + N          
Sbjct: 475 SHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQ------Q 526

Query: 875 FVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFIL 929
                     L+  K +  +  N    E  +   L F+ +    + I S +  +L
Sbjct: 527 ----------LKFYKPY--ICDNDPKYERLVNAILDFLPK-IEENLICSKYTDLL 568

PyMOL of 1vt4

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336	Back alignment and structure

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397	Back alignment and structure

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392	Back alignment and structure

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145	Back alignment and structure

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		935
2ypd_A		392	Probable JMJC domain-containing histone demethyla	100.0
4gjz_A		235	Lysine-specific demethylase 8; JMJC, beta barrel,	99.19
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	99.09
3al5_A		338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	98.85
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	98.83
2yu1_A		451	JMJC domain-containing histone demethylation PROT;	98.83
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	98.78
3kv5_D		488	JMJC domain-containing histone demethylation prote	98.75
3kv9_A		397	JMJC domain-containing histone demethylation prote	98.73
3d8c_A		349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	98.71
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	98.62
3pur_A		528	Lysine-specific demethylase 7 homolog; oxidoreduct	97.37
2xxz_A		332	Lysine-specific demethylase 6B; oxidoreductase, hi	97.3
3avr_A		531	Lysine-specific demethylase 6A; cupin superfamily,	97.04
4ask_A		510	Lysine-specific demethylase 6B; oxidoreductase, KD	96.43
3dxt_A		354	JMJC domain-containing histone demethylation PROT;	95.94
3opt_A		373	DNA damage-responsive transcriptional repressor R;	94.98
2ox0_A		381	JMJC domain-containing histone demethylation PROT;	94.66
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	92.67
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	90.9
2opk_A		112	Hypothetical protein; putative mannose-6-phosphate	90.87
1yhf_A		115	Hypothetical protein SPY1581; structural genomics,	90.64
2pfw_A		116	Cupin 2, conserved barrel domain protein; cupin do	90.36
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	90.23
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	90.18
3fjs_A		114	Uncharacterized protein with RMLC-like cupin fold;	90.1
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	89.9
3lag_A		98	Uncharacterized protein RPA4178; functionally unkn	89.85
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	89.81
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	89.8
2q30_A		110	Uncharacterized protein; double-stranded beta-heli	89.58
1vrb_A		342	Putative asparaginyl hydroxylase; 2636534, structu	89.47
3h8u_A		125	Uncharacterized conserved protein with double-STR	89.45
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	89.43
2fc7_A		82	ZZZ3 protein; structure genomics, ZZ domain, struc	89.27
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	89.25
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	89.2
1v70_A		105	Probable antibiotics synthesis protein; structural	89.16
4e2g_A		126	Cupin 2 conserved barrel domain protein; MCSG, PSI	88.76
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	88.52
2b8m_A		117	Hypothetical protein MJ0764; structural genomics,	88.32
2ozj_A		114	Cupin 2, conserved barrel; cupin superfamily prote	88.07
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	88.07
1tot_A		52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	87.92
2fqp_A		97	Hypothetical protein BP2299; double-stranded beta-	87.92
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	87.64
2xlg_A		239	SLL1785 protein, CUCA; metal binding protein, cupi	87.62
3d82_A		102	Cupin 2, conserved barrel domain protein; structur	87.55
2dip_A		98	Zinc finger SWIM domain-containing protein 2; ZZ d	87.42
2e5r_A		63	Dystrobrevin alpha; ZZ domain, structural genomics	87.23
3ibm_A		167	Cupin 2, conserved barrel domain protein; cupin 2	87.01
2gu9_A		113	Tetracenomycin polyketide synthesis protein; X-RAY	87.01
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	87.0
1o5u_A		101	Novel thermotoga maritima enzyme TM1112; cupin, st	86.86
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	86.84
3kgz_A		156	Cupin 2 conserved barrel domain protein; metallopr	86.68
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	86.17
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	85.85
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	85.52
2l0b_A		91	E3 ubiquitin-protein ligase praja-1; zinc finger,	85.33
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	85.04
2ect_A		78	Ring finger protein 126; metal binding protein, st	84.81
2ozi_A		98	Hypothetical protein RPA4178; APC6210, putative pr	84.67
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	84.55
2i45_A		107	Hypothetical protein; neisseria meningitidis cupin	84.05
1weu_A		91	Inhibitor of growth family, member 4; structural g	83.99
3ql9_A		129	Transcriptional regulator ATRX; zinc finger, trans	83.94
1y9q_A		192	Transcriptional regulator, HTH_3 family; transcrip	83.92
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	83.89
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	83.53
1lr5_A		163	Auxin binding protein 1; beta jellyroll, double st	83.46
2lv9_A		98	Histone-lysine N-methyltransferase MLL5; zinc fing	83.19
3knv_A		141	TNF receptor-associated factor 2; cross-brace, alt	83.17
2oa2_A		148	BH2720 protein; 10175341, structural genomics, joi	82.61
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	82.6
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	82.58
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	82.48
3cew_A		125	Uncharacterized cupin protein; all beta-protein, j	82.41
3l2h_A		162	Putative sugar phosphate isomerase; AFE_0303, stru	82.38
2ysj_A		63	Tripartite motif-containing protein 31; ring-type	82.28
3jzv_A		166	Uncharacterized protein RRU_A2000; structural geno	82.0
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	81.91
1vj2_A		126	Novel manganese-containing cupin TM1459; structura	81.45
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	81.39
4ic3_A		74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	81.35
4axo_A		151	EUTQ, ethanolamine utilization protein; structural	80.92
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	80.92

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=4.2e-129  Score=1060.86  Aligned_cols=352  Identities=32%  Similarity=0.535  Sum_probs=272.8

Q ss_pred             CCcCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhc
Q 002333          497 TKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFK  576 (935)
Q Consensus       497 ~di~~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaIDCld~~eVei~i~qFf~  576 (935)
                      .|..+++|+.|||+||++|||||||||++++++++|+|++||++|++.          .+++|||++|++++|++++||+
T Consensus        16 ~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff~   85 (392)
T 2ypd_A           16 KDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFWD   85 (392)
T ss_dssp             CCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHHH
T ss_pred             cCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHhh
Confidence            455556899999999999999999999999999999999999998642          3678999999999999999999


Q ss_pred             cccCCc---cCCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhc
Q 002333          577 GYTQGR---TYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIA  653 (935)
Q Consensus       577 Gy~~gr---~~~~~wp~mLKLKDWPps~~F~e~lP~h~~eFi~aLP~~EYT~pr~G~LNLAskLP~~~lkPDLGPK~YIA  653 (935)
                      ||++++   +++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+||||++||+++++||||||||||
T Consensus        86 Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiA  164 (392)
T 2ypd_A           86 GFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSA  164 (392)
T ss_dssp             TSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEE
T ss_pred             hccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhh
Confidence            999875   357999999999999999999999999999999999999999985 9999999999999999999999999


Q ss_pred             cccccccCCCCCcccccccccccchhhhcccccccchHhHHHHHHHHHHHHhhhhhhhhccCCCCccccCCCCCCCCCCC
Q 002333          654 YGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDT  733 (935)
Q Consensus       654 YG~~eelGrGDSvTkLH~DmSDAVNIL~htaev~~~~~q~~~i~kl~~~~~~q~~~e~~~~~~~~~~~~e~~~~~~~~~~  733 (935)
                      ||+++++|+|+|||||||||||||||||||++++... ..... ...+++.++                         ++
T Consensus       165 YG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~~-~~l~~~~~~-------------------------~~  217 (392)
T 2ypd_A          165 YGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSKA-GILKKFEEE-------------------------DL  217 (392)
T ss_dssp             CCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCHH-HHHHHHHTS-------------------------CC
T ss_pred             cCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchhh-hhhhhhhhc-------------------------cc
Confidence            9999999999999999999999999999998654322 11111 122222111                         12


Q ss_pred             CcccccccccCCCCcccccccccccccCCccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCc
Q 002333          734 DVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQ  813 (935)
Q Consensus       734 d~~~i~~~~~~~s~~~~~~k~~~~~~~g~~~~~~~~~g~~~~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~  813 (935)
                      |..  ..           .++.+                ..+.+||+||||||||++|||+||++|++||.    .++.+
T Consensus       218 d~~--~~-----------~r~~~----------------~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~~  264 (392)
T 2ypd_A          218 DDI--LR-----------KRLKD----------------SSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVLP  264 (392)
T ss_dssp             CHH--HH-----------HHHTC----------------TTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC---------
T ss_pred             cHH--Hh-----------hhccC----------------CCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCccC
Confidence            200  00           00110                13578999999999999999999999999983    56788


Q ss_pred             ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhhc
Q 002333          814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRL  893 (935)
Q Consensus       814 v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~  893 (935)
                      +.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+
T Consensus       265 ~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~  344 (392)
T 2ypd_A          265 EHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRL  344 (392)
T ss_dssp             -CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred             CCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhccccchhhhhheehhhhhhhhh
Q 002333          894 LPKNHRAREDKLEVYLVFIKRKCYVHE  920 (935)
Q Consensus       894 Lp~~H~akEDKLeVkkm~l~~~~~~~~  920 (935)
                      || +|++||||||||||+||++..+..
T Consensus       345 l~-~~~~~edkLqvk~m~~~av~~av~  370 (392)
T 2ypd_A          345 LK-EEINYDDKLQVKNILYHAVKEMVR  370 (392)
T ss_dssp             ---------------------------
T ss_pred             cc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            96 699999999999999999655443

PyMOL of 2ypd

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*	Back alignment and structure

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*	Back alignment and structure

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*	Back alignment and structure

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*	Back alignment and structure

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*	Back alignment and structure

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}	Back alignment and structure

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*	Back alignment and structure

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*	Back alignment and structure

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*	Back alignment and structure

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*	Back alignment and structure

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}	Back alignment and structure

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9	Back alignment and structure

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A	Back alignment and structure

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11	Back alignment and structure

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A	Back alignment and structure

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18	Back alignment and structure

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6	Back alignment and structure

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A	Back alignment and structure

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}	Back alignment and structure

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}	Back alignment and structure

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A	Back alignment and structure

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}	Back alignment and structure

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2	Back alignment and structure

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A	Back alignment and structure

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*	Back alignment and structure

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}	Back alignment and structure

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}	Back alignment and structure

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}	Back alignment and structure

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}	Back alignment and structure

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}	Back alignment and structure

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10	Back alignment and structure

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A	Back alignment and structure

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		935
d1vrba1		319	b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla	1e-04

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 831 KKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 882
               +E   +        G  +++P G  H  ++ ++   + + F  P  +D
Sbjct: 188 GDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLD 239

PyMOL of d1vrba1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		935
d1h2ka_		335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	98.92
d1vrba1		319	Putative asparaginyl hydroxylase YxbC {Bacillus su	98.73
d1vj2a_		114	Hypothetical protein TM1459 {Thermotoga maritima [	93.8
d1v70a_		105	Hypothetical protein TTHA0104 {Thermus thermophilu	93.23
d2b8ma1		108	Hypothetical protein MJ0764 {Archaeon Methanococcu	92.35
d1yhfa1		112	Hypothetical protein SPy1581 {Streptococcus pyogen	91.63
d2fc7a1		69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	91.6
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	91.35
d1mm2a_		61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	91.33
d2dipa1		85	Zinc finger ZZ-type-containing protein 2 {Human (H	90.33
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	90.0
d1lr5a_		160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	88.8
d1o4ta_		115	Hypothetical protein TM1287 {Thermotoga maritima [	88.58
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	88.38
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	88.14
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	87.14
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	87.08
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	86.62
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	86.31
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	84.64
d2bnma2		122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	84.63
d1wfpa_		74	Zinc finger A20 and AN1 domains containing protein	84.1
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	81.81
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	81.26
d1fp0a1		70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	81.04
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	80.8

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.2e-10  Score=120.61  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=34.6

Q ss_pred             CccceEEEeecCceeEecCCCccccccccc-cceecccc
Q 002333          838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS-CTKVAVDF  875 (935)
Q Consensus       838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS-CIKVAlDF  875 (935)
                      ++.+|.+++.+||++|||+|..|||+||.+ +|.|++.|
T Consensus       243 ~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~  281 (335)
T d1h2ka_         243 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF  281 (335)
T ss_dssp             GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             cCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence            457999999999999999999999999965 89999887

PyMOL of d1h2ka_

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}	Back information, alignment and structure

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure