Citrus Sinensis ID: 002374
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 929 | 2.2.26 [Sep-21-2011] | |||||||
| Q86US8 | 1419 | Telomerase-binding protei | yes | no | 0.463 | 0.303 | 0.281 | 2e-36 | |
| Q5RAK6 | 1419 | Telomerase-binding protei | yes | no | 0.463 | 0.303 | 0.279 | 3e-35 | |
| P61406 | 1418 | Telomerase-binding protei | yes | no | 0.463 | 0.303 | 0.277 | 8e-35 | |
| Q5RJH6 | 1138 | Protein SMG7 OS=Mus muscu | no | no | 0.486 | 0.397 | 0.268 | 2e-31 | |
| Q92540 | 1137 | Protein SMG7 OS=Homo sapi | no | no | 0.485 | 0.396 | 0.270 | 3e-30 | |
| Q9UPR3 | 1016 | Protein SMG5 OS=Homo sapi | no | no | 0.300 | 0.274 | 0.292 | 1e-16 | |
| Q6ZPY2 | 1017 | Protein SMG5 OS=Mus muscu | no | no | 0.299 | 0.273 | 0.280 | 7e-15 |
| >sp|Q86US8|EST1A_HUMAN Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2 | Back alignment and function desciption |
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Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 152/540 (28%), Positives = 235/540 (43%), Gaps = 109/540 (20%)
Query: 5 YEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDR 63
YE IL D FS+ NV+ LW+ Y+ IE+ R Q K P +
Sbjct: 623 YERCILLDIEFSDNQNVDQILWKNAFYQVIEKFR---------------QLVKDP-NVEN 666
Query: 64 VTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKG 123
+IR + L E + F+ L+ K++ Y L ++ + I K +K+ VK
Sbjct: 667 PEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMD---GLAIRSKPLRKT--VKYA 721
Query: 124 LVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILAS 183
L+S RC+I GD+ARY+ E S + Y A S+YL+A + P +G P++QLA+LA
Sbjct: 722 LISAQRCMICQGDIARYR----EQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAV 777
Query: 184 YSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM----------SGDVKSS 233
Y+ +L AVY Y RSLA +P TA+++L+ FE+ ++ QM S D
Sbjct: 778 YTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWRK 837
Query: 234 TAKEAGRLTGKGRGKVEVKL------------ASKDADMETSAVKESVSGVQEKLKAFCT 281
K R G ++E+ + + KD++ E S S + K F
Sbjct: 838 GKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLN---KRFIL 894
Query: 282 RFVRLNGILFTRTSLETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSI 341
F+ +G LFTR +ETF V V LL P GS +++L++I
Sbjct: 895 SFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSP---IGSTR------MLQLMTI 945
Query: 342 LIFTVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCM---------QLSDP 392
+F VHN + ++ ++E R+V+ + A + ++ RC QLS P
Sbjct: 946 NMFAVHNSQLKD---CFSEEC-RSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQLSSP 1001
Query: 393 S----------SSY------LLPGVLVFVEWLACYPDIASGSDAD-ERQATVRSNFWNQC 435
SS+ LLP V V+ +W+ YPD + + + V + W+
Sbjct: 1002 EDQDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTL 1061
Query: 436 ISFLNKILSLG----PMSVADDEDLTCFFNMSRYDEAETENRLALWEDIELRGFLPLLPA 491
F N + ++ P+ D+DLT L L ED L GF+PLL A
Sbjct: 1062 ADFCNILTAVNQSEVPLYKDPDDDLTL---------------LILEEDRLLSGFVPLLAA 1106
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Plays a role in nonsense-mediated mRNA decay. Is thought to provide a link to the mRNA degradation machinery as it has endonuclease activity required to initiate NMD, and to serve as an adapter for UPF1 to protein phosphatase 2A (PP2A), thereby triggering UPF1 dephosphorylation. Degrades single-stranded RNA (ssRNA), but not ssDNA or dsRNA. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 1EC: .EC: -EC: .EC: - |
| >sp|Q5RAK6|EST1A_PONAB Telomerase-binding protein EST1A OS=Pongo abelii GN=SMG6 PE=2 SV=1 | Back alignment and function description |
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| >sp|P61406|EST1A_MOUSE Telomerase-binding protein EST1A OS=Mus musculus GN=Smg6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5RJH6|SMG7_MOUSE Protein SMG7 OS=Mus musculus GN=Smg7 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q92540|SMG7_HUMAN Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9UPR3|SMG5_HUMAN Protein SMG5 OS=Homo sapiens GN=SMG5 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q6ZPY2|SMG5_MOUSE Protein SMG5 OS=Mus musculus GN=Smg5 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 929 | ||||||
| 255570163 | 982 | smg-7, putative [Ricinus communis] gi|22 | 0.992 | 0.938 | 0.671 | 0.0 | |
| 225436648 | 992 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.936 | 0.693 | 0.0 | |
| 356577620 | 967 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.933 | 0.658 | 0.0 | |
| 356521685 | 974 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.934 | 0.651 | 0.0 | |
| 449442587 | 972 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.937 | 0.619 | 0.0 | |
| 357493925 | 966 | Telomerase-binding protein EST1A [Medica | 0.974 | 0.936 | 0.604 | 0.0 | |
| 359481915 | 968 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.942 | 0.594 | 0.0 | |
| 297739936 | 957 | unnamed protein product [Vitis vinifera] | 0.964 | 0.936 | 0.586 | 0.0 | |
| 224086811 | 954 | predicted protein [Populus trichocarpa] | 0.960 | 0.935 | 0.537 | 0.0 | |
| 296083857 | 889 | unnamed protein product [Vitis vinifera] | 0.767 | 0.802 | 0.613 | 0.0 |
| >gi|255570163|ref|XP_002526042.1| smg-7, putative [Ricinus communis] gi|223534623|gb|EEF36319.1| smg-7, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1263 bits (3267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/940 (67%), Positives = 752/940 (80%), Gaps = 18/940 (1%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
MRENYEAI+LEDH FSEQHN+EYALWQLHYRRIEELRAH+SAA++SA SNTSQ KVP R
Sbjct: 50 MRENYEAIVLEDHGFSEQHNIEYALWQLHYRRIEELRAHFSAALASANSNTSQGAKVPSR 109
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
DRVTKIR QFKTFLSEATGFYH+LILKIRAKYGLPL FSEDS+NR++++KDGKK +++
Sbjct: 110 PDRVTKIRLQFKTFLSEATGFYHDLILKIRAKYGLPLAYFSEDSDNRVVLEKDGKKFADM 169
Query: 121 KKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAI 180
KKGL+SCHRCLIYLGDLARYKGLYGEGDSK+REYAAASSYYLQAASLWPSSGNPH+QLAI
Sbjct: 170 KKGLISCHRCLIYLGDLARYKGLYGEGDSKTREYAAASSYYLQAASLWPSSGNPHNQLAI 229
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKE-AG 239
LASYS DEL AVYRYFRSLAVD+PF+TARDNLI+AFEKNRQSY+Q+ GD K K+ +G
Sbjct: 230 LASYSGDELAAVYRYFRSLAVDNPFTTARDNLILAFEKNRQSYTQLLGDTKGLAVKDSSG 289
Query: 240 RLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETF 299
LT KGRGK E K ASKD ++E + E S V E K+FC RFVRLNGILFTRTSLETF
Sbjct: 290 CLTNKGRGKGEAKPASKDTNLEANGDTEKTSNVHEMYKSFCIRFVRLNGILFTRTSLETF 349
Query: 300 AEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYA 359
AEVL+ VSS C LLSSGP EELNFG D ++ALFIVRL+SILIFT+HN+K+E+E QTYA
Sbjct: 350 AEVLSSVSSEFCVLLSSGP-EELNFGPDTVDHALFIVRLISILIFTIHNVKRESEGQTYA 408
Query: 360 EIVQRAVLLQNAFTAVFELMGHIIERCMQLSDPSSSYLLPGVLVFVEWLACYPDIASGSD 419
EIVQRAVLLQNAFTAVFELMGH++ER +QL DPSSSYLLPG+LVF+EWLAC PD+ASGSD
Sbjct: 409 EIVQRAVLLQNAFTAVFELMGHMLERFVQLRDPSSSYLLPGILVFMEWLACCPDVASGSD 468
Query: 420 ADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLALWED 479
ADE+QA VRSNFWN CISFLNKILS S+ D+ED TCF NMS Y+E ET NR+ALWED
Sbjct: 469 ADEKQAAVRSNFWNHCISFLNKILSFWSTSLDDNEDDTCFNNMSHYEEGETGNRIALWED 528
Query: 480 IELRGFLPLLPAQTILDFSRKISFGGDGNKERKDRVKRIFAAGKALANVIMVDQKPVCFD 539
ELRGFLP+LPAQTILDFSRK S+GGDG+KE+ RVKRI AAGKAL+N++ + Q+ V +D
Sbjct: 529 FELRGFLPILPAQTILDFSRKHSYGGDGSKEKISRVKRILAAGKALSNIVKIGQQTVFYD 588
Query: 540 SKVKKFVIGT--EPLDD--ITFTSSDVSKTNDLILENQAEKAMNLGVVQA-PQLYMDGEE 594
S++KKFVIGT + DD +TF S+ + K NDL+ E Q E+ +++ V+Q PQ Y++G+E
Sbjct: 589 SRMKKFVIGTGHQISDDGLLTFDSA-LPKANDLLQEIQPEQTISMSVLQPNPQPYVEGDE 647
Query: 595 EDEVIVFKPAVTEKRADVVGSTWMYYDGFTPGHNAAVGDLQFYAGSVSTSQDNLRQQSTY 654
EDEVIVF+PAV EKR DV+ + W DG P + +V D++FY G++ ++RQQ+ +
Sbjct: 648 EDEVIVFRPAVPEKRNDVLSAEWTPLDGMKPSEDLSVADMKFYGGAL-----DMRQQAAF 702
Query: 655 DSSLPLPVSVGNILPQHLQS-VQPHAPKQLMEEEVSLANSLKGLRLPENGRVLKHEMLEN 713
D+ + VS G Q+LQ +QPH K LMEE VSLANSLK +R ENG V +HE ++
Sbjct: 703 DAGSQITVSSGVSTQQNLQQPIQPHTSKWLMEEAVSLANSLKAVRFMENGHVAEHEFPKD 762
Query: 714 IGPSLPAARTIPIQQSVNVNASGMHYSFSNGPEAVIPSKVDAIASLGVA---AVKASSAF 770
+G + P R++PIQQ NVN SGM Y+ + E+V+PS VD I S +A AVK S A
Sbjct: 763 LGMAHPPVRSVPIQQPANVNTSGMFYNQTKMLESVVPSNVDVITSGVLAESLAVKTSMAL 822
Query: 771 PAGPRKSPVSRPVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPAS 830
PAG RKSPVSRPVRHLGPPPGFS VP KQ P+SGS+L + N L DDYSWLDGYQL +S
Sbjct: 823 PAGMRKSPVSRPVRHLGPPPGFSHVPPKQFNEPVSGSDLMSGNSLADDYSWLDGYQLSSS 882
Query: 831 TKGPGLGSSVNYLSHANPQYVSNSNGLAGT-GFPFPGKQFPAVQSHAEKQKGWQEYQSVE 889
TKG GL ++ N+ S A PQY++++NGL GT FPFPGKQ P+VQ EKQ GWQ YQ++E
Sbjct: 883 TKGSGLNTAANFTSQAMPQYINSNNGLMGTVSFPFPGKQVPSVQFQTEKQNGWQNYQALE 942
Query: 890 HLKLQHEQQLLQQQLINGNQFTPLPEQYQGQSIWTGRYFV 929
HL++Q EQQL QQ L QFTP+PEQY G+SIW+ RY V
Sbjct: 943 HLRVQQEQQLQQQLLNGNQQFTPMPEQYHGKSIWSSRYLV 982
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436648|ref|XP_002276189.1| PREDICTED: uncharacterized protein LOC100267161 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356577620|ref|XP_003556922.1| PREDICTED: uncharacterized protein LOC100787602 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356521685|ref|XP_003529483.1| PREDICTED: uncharacterized protein LOC100779982 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449442587|ref|XP_004139063.1| PREDICTED: uncharacterized protein LOC101220502 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357493925|ref|XP_003617251.1| Telomerase-binding protein EST1A [Medicago truncatula] gi|355518586|gb|AET00210.1| Telomerase-binding protein EST1A [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|359481915|ref|XP_002272687.2| PREDICTED: uncharacterized protein LOC100264171 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297739936|emb|CBI30118.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224086811|ref|XP_002307971.1| predicted protein [Populus trichocarpa] gi|222853947|gb|EEE91494.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|296083857|emb|CBI24245.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 929 | ||||||
| TAIR|locus:2150280 | 1059 | SMG7 "AT5G19400" [Arabidopsis | 0.779 | 0.683 | 0.546 | 3.4e-248 | |
| TAIR|locus:2032205 | 880 | AT1G28260 [Arabidopsis thalian | 0.432 | 0.456 | 0.299 | 1e-31 | |
| UNIPROTKB|B1ALB4 | 757 | SMG7 "Protein SMG7" [Homo sapi | 0.163 | 0.200 | 0.319 | 5e-22 | |
| MGI|MGI:2682334 | 1138 | Smg7 "Smg-7 homolog, nonsense | 0.163 | 0.133 | 0.319 | 9.2e-22 | |
| RGD|1310761 | 1140 | Smg7 "Smg-7 homolog, nonsense | 0.163 | 0.133 | 0.319 | 9.4e-22 | |
| UNIPROTKB|D4ACJ3 | 1149 | Smg7 "Protein Smg7" [Rattus no | 0.163 | 0.132 | 0.319 | 9.9e-22 | |
| UNIPROTKB|E9PCE5 | 1049 | SMG7 "Protein SMG7" [Homo sapi | 0.163 | 0.144 | 0.319 | 4.6e-21 | |
| UNIPROTKB|Q92540 | 1137 | SMG7 "Protein SMG7" [Homo sapi | 0.163 | 0.133 | 0.319 | 7.6e-21 | |
| UNIPROTKB|E9PCI0 | 1145 | SMG7 "Protein SMG7" [Homo sapi | 0.163 | 0.132 | 0.319 | 7.9e-21 | |
| UNIPROTKB|F1S660 | 1137 | SMG7 "Uncharacterized protein" | 0.163 | 0.133 | 0.319 | 8.7e-21 |
| TAIR|locus:2150280 SMG7 "AT5G19400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1937 (686.9 bits), Expect = 3.4e-248, Sum P(2) = 3.4e-248
Identities = 408/747 (54%), Positives = 515/747 (68%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+RE YEAIILE H FSEQHN+E LWQLHY+RIE R H + ++S+ S +Q K P +
Sbjct: 47 LREKYEAIILESHTFSEQHNIEIPLWQLHYKRIEYFRLHINRVLASSTSTAAQNVKGPSK 106
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
++++ +++ QF+TFLSEATGFYH++ILKIR+KYGLPLG+FSED +++ + DKDGK+ +EV
Sbjct: 107 AEQIAQLKLQFRTFLSEATGFYHDMILKIRSKYGLPLGSFSEDQQSQNLSDKDGKELAEV 166
Query: 121 KKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
+K L SCHRCLIYLGDLARYKG+Y EGDS+SR+ WP+SGNPHHQLAI
Sbjct: 167 QKALKSCHRCLIYLGDLARYKGMYAEGDSRSRQYASASSYYLQAASLWPASGNPHHQLAI 226
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGR 240
+ASYS DE V YRYFRSLAV+ PF TARDNLIVAF+KNRQSY ++ K S+ R
Sbjct: 227 VASYSRDEFVTTYRYFRSLAVEYPFPTARDNLIVAFDKNRQSYEKLFVPSKDSSK----R 282
Query: 241 LTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFA 300
LTGKGRGK ++ KDA + K+ V+ E LKAF RFV LNGILFTRTSLETF
Sbjct: 283 LTGKGRGK-GADISLKDATLVAGPEKDKVTIANEMLKAFSIRFVHLNGILFTRTSLETFF 341
Query: 301 EVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAE 360
+VLA SS L E++S G +EL G D +++ALFIVR+V++LIF+VHN KKE E Q+YAE
Sbjct: 342 DVLASTSSSLREVISLGSAKELTLGIDTSDSALFIVRVVTMLIFSVHNSKKETEGQSYAE 401
Query: 361 IVQRAVLLQNAFTAVFELMGHIIERCMQLSDPSSSYLLPGVLVFVEWLACYPDIASGSDA 420
IVQR +N+ TA FEL+G +IE+C+QL DPSSSY LPGVLVFVEWLAC PDIA GSD
Sbjct: 402 IVQRVEPARNSLTASFELLGLVIEKCVQLGDPSSSYFLPGVLVFVEWLACCPDIALGSDP 461
Query: 421 DERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLALWEDI 480
D+RQ VR++FWNQ + F N++LSLGP + D ED TCF NMS YDE ETENRLALWED
Sbjct: 462 DDRQTAVRNSFWNQFVVFFNQVLSLGPTFIDDVEDETCFSNMSLYDERETENRLALWEDY 521
Query: 481 ELRGFLPLLPAQTILDFSRKISFGGDGNKERKDRVKRIFAAGKALANVIMVDQKPVCFDS 540
ELRGFLPLLPAQTIL+FSRK SFG +G KE+K R+KRIFAAGKAL +VI VDQ V FDS
Sbjct: 522 ELRGFLPLLPAQTILNFSRKHSFGTEGPKEKKARIKRIFAAGKALTSVIKVDQNHVYFDS 581
Query: 541 KVKKFVIGTEPLDDITFTSSDVSKTNDLILENQAEKAMNLGVVQAPQ-LYMDGEEED--E 597
K KKF++G +P DD + S K + + +NQ N ++Q Q +YM GEE+D E
Sbjct: 582 KKKKFLVGVKPADDFLDSHSSPPKACNALQDNQVMIDHNSPIMQLDQQIYM-GEEDDDDE 640
Query: 598 VIVFKPAVTEKRADVVGSTWMYYDGFTPGHNAA-VGDLQFYAGSVSTSQDNLRQQSTYDS 656
VIVFKP VTEKR + ++ GF +GD + +GS +N Q+ ++
Sbjct: 641 VIVFKPLVTEKRKEASDQIYVPSGGFRKSDQVTTMGDFKALSGSDVAFHENQILQARGNA 700
Query: 657 SLPLPVSVG-NILPQHLQSVQPHAPK-QLMEEEV----SLANSLKGLRLPENGRVLKH-E 709
S+ +P SVG N+L S Q A Q ++ +V S+ +L GL L H +
Sbjct: 701 SIQVPASVGANLLGPLQPSTQSQAMHMQQVQTQVQVPASVGANLLGLLLTSTQSQAMHMQ 760
Query: 710 MLEN--IGP----SLPAARTIPIQQSV 730
++ + P SL A+R PIQ V
Sbjct: 761 QVQTQAVNPQPAQSLAASRLQPIQSQV 787
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| TAIR|locus:2032205 AT1G28260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B1ALB4 SMG7 "Protein SMG7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:2682334 Smg7 "Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1310761 Smg7 "Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D4ACJ3 Smg7 "Protein Smg7" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E9PCE5 SMG7 "Protein SMG7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q92540 SMG7 "Protein SMG7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E9PCI0 SMG7 "Protein SMG7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S660 SMG7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00000654001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (957 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 929 | |||
| pfam10373 | 276 | pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding dom | 3e-76 | |
| pfam10374 | 125 | pfam10374, EST1, Telomerase activating protein Est | 6e-27 |
| >gnl|CDD|220721 pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding domain | Back alignment and domain information |
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Score = 249 bits (639), Expect = 3e-76
Identities = 101/342 (29%), Positives = 148/342 (43%), Gaps = 72/342 (21%)
Query: 157 ASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAF 216
A YYL A+ L PSSG P++QL ++A Y + L AVY Y RSLAV +PF TA++NL + F
Sbjct: 1 ALRYYLLASLLLPSSGEPYNQLGVIALYVGNHLDAVYYYLRSLAVRNPFPTAKNNLELLF 60
Query: 217 EKNRQSYSQMSGDVKSSTAKEAGRLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKL 276
EK + V + E S + L
Sbjct: 61 EKIKFLADL-------------------------VSQELLNKGKEESKS--------DLL 87
Query: 277 KAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIV 336
K F+RL+GIL+T TS E F+E+ V L LLS N ++
Sbjct: 88 KRLVIYFLRLHGILYTPTSFEEFSELENEVLKQLQVLLSESN---------YLLNESLLL 138
Query: 337 RLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERC------MQLS 390
++V I IF +H L+ ++ +++ E LL+ A +F G ++E ++
Sbjct: 139 KMVLINIFALHLLRDDSSSKSRQE------LLRLALKFLFSFFGFLLEELNELVKELESE 192
Query: 391 DPSSSYLLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSV 450
P + LLP + V+ WL PD+ S++DE+Q N +S L+ +LS
Sbjct: 193 TPVLTRLLPALRVYSCWLKSNPDVLEYSESDEKQVKALWKLLNNLLSSLSSLLS------ 246
Query: 451 ADDEDLTCFFNMSRYDEAETENRLALWEDIELRGFLPLLPAQ 492
+E L ED+ELRGF PL PA
Sbjct: 247 ------------FIDEELPPSRSYLLEEDVELRGFSPLKPAL 276
|
Est1 is a protein which recruits or activates telomerase at the site of polymerisation. This is the DNA/RNA binding domain of EST1. Length = 276 |
| >gnl|CDD|220722 pfam10374, EST1, Telomerase activating protein Est1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 929 | |||
| KOG2162 | 862 | consensus Nonsense-mediated mRNA decay protein [RN | 100.0 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 100.0 | |
| PF10374 | 131 | EST1: Telomerase activating protein Est1; InterPro | 99.86 | |
| KOG2162 | 862 | consensus Nonsense-mediated mRNA decay protein [RN | 95.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.23 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 92.41 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 88.61 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 85.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 85.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 84.63 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 83.61 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 82.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 80.48 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 80.41 |
| >KOG2162 consensus Nonsense-mediated mRNA decay protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=396.91 Aligned_cols=713 Identities=24% Similarity=0.254 Sum_probs=465.4
Q ss_pred HHHHHHHHhcChhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcccccCCCchhhHHHHHHHHHHHHHHHHHH
Q 002374 2 RENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEATGF 81 (929)
Q Consensus 2 Re~ye~iIl~D~~fa~~~~VE~~LWk~hYk~Ie~fRk~ik~~~~~~~s~~~Q~~k~~~~~~~~rkl~~~f~~fLk~a~~F 81 (929)
++.||.+|+....+.+.+.+|-.+|+.||+.|++||+..+. .-..++...|+.++..|++|
T Consensus 46 ~~~~e~a~~~~~~~~~~~~~ei~~~~s~g~~i~~f~k~~~~-------------------~~~~~~~~~~r~~~s~a~~~ 106 (862)
T KOG2162|consen 46 TEKAENAILVATTASQLRPVEILLWQSHGKKIEEFRKGQKM-------------------ANEIKLEGILRTLLSKAADF 106 (862)
T ss_pred HhhHHHHHHHhhhHhhcceeeEechhhhhccHHHHHHHHHH-------------------HHHHHhHHHHHHHHHHhhhH
Confidence 57899999999999999999999999999999999966221 12346678899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccccccccccCCCCchhhhhhHHHHHHHHHHhcchhhhhhhhcCCCCccccHHHHHHHH
Q 002374 82 YHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYY 161 (929)
Q Consensus 82 Y~~LI~~L~~~y~l~l~~~~~~~~~~~v~~kd~~~s~~~k~al~schrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY 161 (929)
|+..+.+++..+ ++++..|||||+|||||+||+.++...+.+. +|..+..||
T Consensus 107 y~~~~~~~r~~~---------------------------~~a~~~~h~~~~~lgdl~ry~~~~~~~~~~~-~~~~~~~~y 158 (862)
T KOG2162|consen 107 YQNDLKKLRDKS---------------------------QKARRLCHRCLYYLGDLSRYQTQLAIADTDL-EWESGSPYY 158 (862)
T ss_pred HhhhHHHHHHHH---------------------------HHHHHHHhhheeecchHHHHHHHHhhccccc-chhhcChHH
Confidence 999999999877 4678899999999999999999998888777 999999999
Q ss_pred HHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHhhhhhcccccccccccccccc
Q 002374 162 LQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRL 241 (929)
Q Consensus 162 ~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~~~~ql~~~~k~~~~~~p~r~ 241 (929)
..|..++|..|+|+||||+|+.++++.+.+.|||+|||++.+||+.|.+||..+|+|+++.+.++... .+.+ +
T Consensus 159 ~ea~~~~p~~g~p~~ql~~l~~~~~~~~~~~y~~~~~l~~~~~f~~a~~Nl~~~f~k~~~~~l~~~s~---~~~~---~- 231 (862)
T KOG2162|consen 159 LEAASLYPQSGMPHNQLGILANYKNDEFLSTYHYLRSLLVEISFKGASENLKKLFDKNRLSSLKLPST---DEAY---N- 231 (862)
T ss_pred HHHHHhccccCChHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHhhcccccccc---Ccch---h-
Confidence 99999999999999999999999999999999999999999999999999999999999986544321 1100 0
Q ss_pred cCCCCCcccccccccccccchhhhhhcccchHHHHH-HHHHHHHHHhccccccCChhHHHHHHHHHHHHHHHHhc-CCCc
Q 002374 242 TGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLK-AFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCELLS-SGPE 319 (929)
Q Consensus 242 ~~~~~g~~e~rl~~~d~~~e~~~~k~~~~s~~E~~k-~f~~~FV~lhGiLFtk~~lEtF~~~l~~~l~~L~~lL~-~~~~ 319 (929)
. ++-..+..++.......... ...+....+ .+-..|+.+.++.| +...+.+.+..+....+.+.++. ....
T Consensus 232 ~-----~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~l~~-~~n~~~~~d~~a~~~~~~r~l~~~~~~~ 304 (862)
T KOG2162|consen 232 I-----EGAVFFYRKDLDKAAFCLVA-GLSCSSPCEVVGKRFFALLSDLQF-RANHSLATDIMAAYVSEQRKLLDVLLEI 304 (862)
T ss_pred h-----cceEEEecccchhhhhhHhh-hhhccchHHHHHHHHHHHHHhhhc-cccchhHHHHHHHHHHHhhhhhhhhhhh
Confidence 0 00011111111111110000 011111112 22223666666666 99999999999998888888876 3222
Q ss_pred cccccC-CCcccchHHHHHHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 002374 320 EELNFG-SDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCMQLSDPSSSYLL 398 (929)
Q Consensus 320 ~el~~g-~~~~~~a~~llqlvaI~Ifavhnl~k~s~~qs~aei~qrs~ll~~Al~~Af~~~s~ll~r~~ql~Dpn~~~lL 398 (929)
.++... .+....+....++|...++.+|+. ..+...++++.++-......++..|...+....+|.+..+....+.+
T Consensus 305 ~ql~~~~i~~~~~s~~~~riv~~~~~~f~~~--h~k~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~q~~~~~s~~~~ 382 (862)
T KOG2162|consen 305 IQLARHEITERKWSDTEYRIVTFFLVSFSNI--HSKNVLYAEIEAKVEDTFLKLSPIFYATGSSEEKSKQQRDEYSPPFL 382 (862)
T ss_pred HHHHhccccccccccceEeeehhhHHHhhhh--hhHHHHHHHHHHHhcccccccccchhhcccchHHHHhhcCCcccccc
Confidence 222221 122223345667777777777776 33444455544332111123333455556666777777887788999
Q ss_pred chhHHHHHHhhcCccccCCCChhhhhhhhccccHHHHHHHHHHhhhcCC-CCCCCcccchhhcccCCccccccccccCCc
Q 002374 399 PGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGP-MSVADDEDLTCFFNMSRYDEAETENRLALW 477 (929)
Q Consensus 399 PAVlVfLdWL~~~Pd~~~~~e~de~q~~~~~~pW~~La~lLNtLl~~~~-~~id~~~de~~f~~mp~~~e~e~~~~~pLP 477 (929)
+++.++.+||.+.++......-+..+...+..+|..+..+.|.+...+. ..++..++.+|++ ......+|
T Consensus 383 ~~~~~~s~~ls~~s~~~~~~~p~~~~~~~s~~~~~~l~~~~~~l~~~g~~~~~~s~~~~tc~~---------s~n~~a~~ 453 (862)
T KOG2162|consen 383 KATDRSSDKLSTLSDDFAYSAPVKRDESYSREFMPRLSSRFRKLLQLGYSCDDDSLYTSTCKS---------SENRLALW 453 (862)
T ss_pred cccchhhhhhccccHHHhhcCccccccccchhhhHHHHHHHHHHHHhcCCcchhccccccccc---------hhhhhhhH
Confidence 9999999999999988766432222222567899999999999998763 2223334456653 23578999
Q ss_pred hhhhhccCcCCCCCCCCCCCCCCCCCCCCchhhhhhHHHH-HHHHHHHHhccccCCCccEEEcCCC-cEEEccCCC-ccc
Q 002374 478 EDIELRGFLPLLPAQTILDFSRKISFGGDGNKERKDRVKR-IFAAGKALANVIMVDQKPVCFDSKV-KKFVIGTEP-LDD 554 (929)
Q Consensus 478 EDf~LRGFlPL~~a~~~l~F~~~~~~~~De~s~~~~R~~R-IL~lG~~LA~~~~~~~~wI~fD~~~-rkF~v~~e~-~~~ 554 (929)
||.++.++++..+.+..+.++.........+....+++.+ +-.+++.+-......+.|+.+|... +.|.+..+. +..
T Consensus 454 ~dl~~~~~~~~~~~~~~~~~s~~~~~~~~f~~~~~~~i~~~~n~~~~e~~r~~~~~q~~~~~d~~~~~~~l~~~e~as~~ 533 (862)
T KOG2162|consen 454 EDLELYDLLLSVLEHNLPATSRIESRLEEFSEGKEVSIMSFKNFALKEFFRRSKTLQELLEEDTRIRHCFLLHIEDASGE 533 (862)
T ss_pred HHhhhhccccccCccccchhccCchhhhhCCcccchhhccccccccccccccchhhhhhhhccccccccccccccccchh
Confidence 9999999999998887777765443222224456677777 4455555555556788999998887 778887887 444
Q ss_pred cccccCCcccchhHHhhhh-hhhhhccccccCCC-cC-CCCCCcceeEEeccCcc--ccccccccccccccCCcccccc-
Q 002374 555 ITFTSSDVSKTNDLILENQ-AEKAMNLGVVQAPQ-LY-MDGEEEDEVIVFKPAVT--EKRADVVGSTWMYYDGFTPGHN- 628 (929)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~evi~fkp~~~--~~~~~~~~~~~~~~~~~~~~~~- 628 (929)
+.+.++..++..... +.+ .....+..|++... .+ -..+.+.++|++||++. ++.......-..+++..+.-..
T Consensus 534 l~~~~~~~~~~~se~-~~~~~~i~~~~~i~~l~~e~~~~~~k~~~~~i~~~pl~~i~s~~~~s~~l~~~~n~~~~~~~~f 612 (862)
T KOG2162|consen 534 LSLLGDPAEETRSEL-ESLEIKINKCLEIMVLDLERLLLHEKIRKDEIEINPLVLIPSTNSFSSDLLKRPNELLESTRLF 612 (862)
T ss_pred hhccCCchhhhhhcc-cchhhhccccchhHHHHHHhhhhhcccccceEEeccceecCcchhhHHHHhhccchhhhhhhhh
Confidence 545443221211111 111 11222444555544 22 23345668899999998 7655444333333311100000
Q ss_pred -----c--------cccc--ccccc-cccccc---------------------------ccccccccc---cCCCCCCcc
Q 002374 629 -----A--------AVGD--LQFYA-GSVSTS---------------------------QDNLRQQST---YDSSLPLPV 662 (929)
Q Consensus 629 -----~--------~~~~--~~~~~-~~~~~~---------------------------~~~~~~~~~---~~~~~~~~~ 662 (929)
+ ..++ +.+.. |+.... +...+.... +..+.-..+
T Consensus 613 ~~l~~~dll~el~~~~~~~~l~~~~~~l~~~~p~~~~k~~~~v~~~~~~~e~~v~~~~~~~s~g~~L~~l~~~~e~~~~~ 692 (862)
T KOG2162|consen 613 LELTVSDLLRELLSLAKDVELDSAMAGLERTDPEHPIKASNTVRERKEAVEELVRRLLGQTSDGFRLCELKFSSEAKMGV 692 (862)
T ss_pred hccchHHHHHHHhhhhccccccccccccccCCccccchhhhhhhcccccHHHHHHHHhccccccchhhhccccccccccc
Confidence 0 0000 11111 111110 000000000 000000000
Q ss_pred cc-----------------------ccCCcccccccC----------------CCCCCchhhhhhhhhhcccCCcCCCCC
Q 002374 663 SV-----------------------GNILPQHLQSVQ----------------PHAPKQLMEEEVSLANSLKGLRLPENG 703 (929)
Q Consensus 663 ~~-----------------------~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (929)
.. ..-.|.+.|..| ..-++|...+++......-++.-+.++
T Consensus 693 ~t~~~s~~e~~~~~~s~~r~~q~~~~~p~p~~~~~~~~~v~h~~~r~~k~ks~~~~~~~~~~~a~~~~a~~~~~~~~~s~ 772 (862)
T KOG2162|consen 693 ETQDTSQFELCKILSSTFRRIQEEPRSPEPSATQIPQDCVLHTEDRSLKRKSFTQNSPVRDLPALDTWASGVPFASYSSS 772 (862)
T ss_pred cccccCchHHHHhhhhhhHHHhcccCCCCCCcccCchhheecccccccccccccCCccCcchHHHhccccCCccccccCc
Confidence 00 001111111111 223556655555555555556668999
Q ss_pred cccchhhhcccCCCCCCCcccCcccccccCC-CCcccccCCCCcccccCcchhhhccchhh----hccCCCCCCCCCCCC
Q 002374 704 RVLKHEMLENIGPSLPAARTIPIQQSVNVNA-SGMHYSFSNGPEAVIPSKVDAIASLGVAA----VKASSAFPAGPRKSP 778 (929)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 778 (929)
++|. |..-++++.++.+.+. ++.|..- .++.+++.-..++..+..+|...++ +.+ |- +. .|+.+
T Consensus 773 ~~~~---~~~~~~~~~~a~~~~~-~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~-~~-----ak~~q 841 (862)
T KOG2162|consen 773 KQTR---QGIEVLSLYKASSLQA-SSKNNLKCATTKGSFWLASQAETGEEEDRSNDA-VVADALAVQ-SL-----AKTEQ 841 (862)
T ss_pred ceeE---eeecccCcccccccch-hhhcchhhhcccCccccchhhhhCCcccccchh-hhcccceeh-hh-----hhccc
Confidence 9999 8999999999999999 7766665 7778888899999999999999999 555 43 33 49999
Q ss_pred CCCCCCCCCCCCCCCCCCCc
Q 002374 779 VSRPVRHLGPPPGFSPVPSK 798 (929)
Q Consensus 779 ~sr~~~~~gpppgf~~~~~k 798 (929)
..+-.+|+++||||+.+|-+
T Consensus 842 ~~~~~~~~~~~~~~~~~~~~ 861 (862)
T KOG2162|consen 842 LTADQQSFTQPPGGNSTPNR 861 (862)
T ss_pred cchhhhccCCCCCcccCCCC
Confidence 99999999999999999854
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
| >PF10374 EST1: Telomerase activating protein Est1; InterPro: IPR019458 Est1 is directly involved in telomere replication | Back alignment and domain information |
|---|
| >KOG2162 consensus Nonsense-mediated mRNA decay protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 929 | ||||
| 1ya0_A | 497 | Crystal Structure Of The N-Terminal Domain Of Human | 4e-26 |
| >pdb|1YA0|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Smg7 Length = 497 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 292 bits (748), Expect = 3e-89
Identities = 125/561 (22%), Positives = 218/561 (38%), Gaps = 119/561 (21%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRR-IEELRAHYSAAVSSAGSNTSQATKVPL 59
+++ Y+ +++ D ++ VE LW ++ I L+
Sbjct: 36 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNR---------------- 79
Query: 60 RSDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSS- 118
+ ++++ FL A+GFY +L+ ++ + + L + S+ II +K S+
Sbjct: 80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAI 139
Query: 119 ---EVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPH 175
+ C CL++LGD+ARY+ + A SYY AA L PS+G P+
Sbjct: 140 VKPQSSSCSYICQHCLVHLGDIARYRNQTSQ----------AESYYRHAAQLVPSNGQPY 189
Query: 176 HQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTA 235
+QLAILAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 190 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT------- 242
Query: 236 KEAGRLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTS 295
+ + F F++ +G ++ S
Sbjct: 243 -------------------------------------KWGVSDFIKAFIKFHGHVYLSKS 265
Query: 296 LETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENEN 355
LE + + + ELL N+ +V + I +F +H+L+ +
Sbjct: 266 LEKLSPLREKLEEQFKELLFQKA-----------FNSQQLVHVTVINLFQLHHLRDFSNE 314
Query: 356 QTYAEIVQRAVLLQNAFTAVFELMGHIIERC----MQLSDPSSSYLLPGVLVFVEWLACY 411
Q L A+F I+ +C + ++Y LP V V ++WL
Sbjct: 315 TEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLR 374
Query: 412 PDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETE 471
P + + DERQ W IS LN ++ +
Sbjct: 375 PRVFQEAVVDERQ-----YIWPWLISLLNSFH-------------------PHEEDLSSI 410
Query: 472 NRLALWEDIELRGFLPLLPAQTILDFSRKISF--GGDGNKERKDRVKRIFAAGKALANVI 529
+ L E+ EL+GFL L P+ LDFS+ G ++R+ R +R+ + GK +A+
Sbjct: 411 SATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIAD-- 468
Query: 530 MVDQKPVCFDSKVKKFVIGTE 550
+ + +++V K + TE
Sbjct: 469 -NQPRLIQCENEVGKLLFITE 488
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 929 | |||
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 100.0 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 95.15 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 93.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 93.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 93.63 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 93.4 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 93.17 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 93.15 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 93.13 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 93.12 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 93.06 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 92.98 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 92.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 92.6 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 92.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 92.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 92.16 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 92.02 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 92.0 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 91.74 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.74 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 91.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 91.31 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 91.25 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 91.14 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 90.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 90.67 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 90.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 90.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 90.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 90.49 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 90.48 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 90.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 90.31 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 90.27 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 90.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 90.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 89.84 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 89.4 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 89.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 89.3 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 89.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 89.18 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 89.04 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 88.3 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 88.27 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 88.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 87.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 87.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 87.93 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 87.93 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 87.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 87.28 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 87.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 87.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 86.86 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 86.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 86.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 86.31 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 86.07 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 85.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 85.5 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 85.21 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 85.04 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 84.99 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 84.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 84.61 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 84.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 84.4 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 84.21 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 84.01 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 83.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 83.91 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 83.76 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 83.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 83.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 82.81 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 82.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 82.71 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 82.48 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 82.19 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 82.19 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 82.18 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 82.0 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 81.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 81.57 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 81.47 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 81.37 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 81.23 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 81.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 81.1 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 81.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 80.96 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 80.8 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 80.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 80.23 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 80.2 |
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-75 Score=675.43 Aligned_cols=440 Identities=29% Similarity=0.486 Sum_probs=340.8
Q ss_pred CHHHHHHHHhcChhhhhhchHHHHHHH-HHHHHHHHHHHHHHHhhhccCCCCcccccCCCchhhHHHHHHHHHHHHHHHH
Q 002374 1 MRENYEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEAT 79 (929)
Q Consensus 1 lRe~ye~iIl~D~~fa~~~~VE~~LWk-~hYk~Ie~fRk~ik~~~~~~~s~~~Q~~k~~~~~~~~rkl~~~f~~fLk~a~ 79 (929)
||++|+++||.|++|+.+++||+.||| +||++|+.+|+..+. +.+ + ..++++..|..||++|+
T Consensus 36 L~~~~~~lil~d~~~a~~~~ve~~LWk~~fy~~I~~~r~~~~~------------~~~---~-~~~~~~~~~~~fL~~a~ 99 (497)
T 1ya0_A 36 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN------------RAN---P-NRSEVQANLSLFLEAAS 99 (497)
T ss_dssp HHHHHHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC------------SSC---T-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHhHhHhhHHHHHHHHHHHHHHHHHHHHhhh------------cCC---c-cHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999 677899999987642 111 1 12467889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccccccccccCCCCc----hhhhhhHHHHHHHHHHhcchhhhhhhhcCCCCccccHH
Q 002374 80 GFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKS----SEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYA 155 (929)
Q Consensus 80 ~FY~~LI~~L~~~y~l~l~~~~~~~~~~~v~~kd~~~s----~~~k~al~schrCLi~LGDLaRYr~~~~~~~~~~~~~~ 155 (929)
+||++||++|+.+|+++++.+.+......+.++....+ +....++++|||||||||||+|||++ |+
T Consensus 100 ~FY~~li~~l~~~y~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hr~l~~LGDL~RY~~~----------~~ 169 (497)
T 1ya0_A 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQ----------TS 169 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTC----------HH
T ss_pred HHHHHHHHHHHHHhCCChHhhhhhhhhccccccccccccccccchhHHHHHHHHHHHHcccHHHHHHH----------HH
Confidence 99999999999999998765543322222222211111 12235678999999999999999975 46
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHhhhhhcccccccccc
Q 002374 156 AASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTA 235 (929)
Q Consensus 156 ~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~~~~ql~~~~k~~~~ 235 (929)
.|++||.+|+.+.|++|+||||||+|++++++.++|+|||+|||++++||++|++||..+|+++.+.....
T Consensus 170 ~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~~~~~~~~--------- 240 (497)
T 1ya0_A 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV--------- 240 (497)
T ss_dssp HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC---------
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhhhhc---------
Confidence 89999999999999999999999999999999999999999999999999999999999999986532100
Q ss_pred cccccccCCCCCcccccccccccccchhhhhhcccchHHHHHHHHHHHHHHhccccccCChhHHHHHHHHHHHHHHHHhc
Q 002374 236 KEAGRLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCELLS 315 (929)
Q Consensus 236 ~~p~r~~~~~~g~~e~rl~~~d~~~e~~~~k~~~~s~~E~~k~f~~~FV~lhGiLFtk~~lEtF~~~l~~~l~~L~~lL~ 315 (929)
+ ...+ .++|+..||++||+||+++++++|..+...++.+|..++.
T Consensus 241 ------------~-------------------~~~~----~~~~~~~Fv~lh~~lf~~~~~~~f~~l~~~~~~~l~~~l~ 285 (497)
T 1ya0_A 241 ------------K-------------------TKWG----VSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLF 285 (497)
T ss_dssp ------------C-------------------SSCC----HHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred ------------c-------------------ccCC----hHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHh
Confidence 0 0001 2468889999999999999999999999999999999886
Q ss_pred CCCccccccCCCcccchHHHHHHHHHHHHhhccCCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 002374 316 SGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKE---NENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCMQL--- 389 (929)
Q Consensus 316 ~~~~~el~~g~~~~~~a~~llqlvaI~Ifavhnl~k~---s~~qs~aei~qrs~ll~~Al~~Af~~~s~ll~r~~ql--- 389 (929)
.+. .+...+++|++||||++|+...+ ...+++++..+.+ ...++.++|+++++++++|.+.
T Consensus 286 ~~~-----------~~~~~lv~i~~ini~~~~~~~~~~~e~~~~s~~~~~~~s--~~~~l~l~~~~l~~~l~~~~~~~~~ 352 (497)
T 1ya0_A 286 QKA-----------FNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLC--WTQLLALFMSFLGILCKCPLQNESQ 352 (497)
T ss_dssp TTC-----------SCHHHHHHHHHHHHHHHHHHSCGGGGTSCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHCC-CC
T ss_pred hcc-----------ccHHHHHHHHHHHHHHHHhcccCchhhcccccchhhhhh--HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 432 23357999999999999987542 2234444433322 2346788899999999998653
Q ss_pred CCCCCCCCcchhHHHHHHhhcCccccCCCChhhhhhhhccccHHHHHHHHHHhhhcCCCCCCCcccchhhcccCCccccc
Q 002374 390 SDPSSSYLLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAE 469 (929)
Q Consensus 390 ~Dpn~~~lLPAVlVfLdWL~~~Pd~~~~~e~de~q~~~~~~pW~~La~lLNtLl~~~~~~id~~~de~~f~~mp~~~e~e 469 (929)
.++...++||+||||++||+|+|+++.+..+++ +.+||+.|+.|||+|.+.. +| + +
T Consensus 353 e~~~~~~~LP~V~v~l~wL~~~~~~~~~~~~~e-----~~~~W~~la~fLN~L~~~~-------~d------~---~--- 408 (497)
T 1ya0_A 353 EESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDE-----RQYIWPWLISLLNSFHPHE-------ED------L---S--- 408 (497)
T ss_dssp SSCSSSSSHHHHHHHHHHHTTCGGGGGCHHHHT-----TTTSHHHHHHHHGGGCCBS-------CC------C---C---
T ss_pred cCCCCccccccHHHHHHHHHhChhhhchhhhhh-----hhhHHHHHHHHHHhCCCcc-------cc------C---C---
Confidence 256678899999999999999999998865553 5689999999999997542 11 1 1
Q ss_pred cccccCCchhhhhccCcCCCCCCCCCCCCCCCC-C-CCCchhhhhhHHHHHHHHHHHHhccccCCCccEEEcCCCcEEEc
Q 002374 470 TENRLALWEDIELRGFLPLLPAQTILDFSRKIS-F-GGDGNKERKDRVKRIFAAGKALANVIMVDQKPVCFDSKVKKFVI 547 (929)
Q Consensus 470 ~~~~~pLPEDf~LRGFlPL~~a~~~l~F~~~~~-~-~~De~s~~~~R~~RIL~lG~~LA~~~~~~~~wI~fD~~~rkF~v 547 (929)
.+..+||||||+||||+|+++++++++|.+++. + ++++.++...|++||||+|++||++ .++||+||++.++|..
T Consensus 409 ~~~~~~LpED~~LRGf~pl~~~~p~~~F~~~~~~~~~~~~~~~~~~R~~RiL~lG~~LA~~---~~r~i~~d~~~~~~~~ 485 (497)
T 1ya0_A 409 SISATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADN---QPRLIQCENEVGKLLF 485 (497)
T ss_dssp -CCCSCCHHHHHTTTCGGGHHHHTTCCCSSCC------CCHHHHHHHHHHHHHHHHHHHHH---CTTTCEEEEETTEEEE
T ss_pred CCCCccChhHHHhcCccchhhhcCccccccCCccccccchhHHHHHHHHHHHHHHHHHHcC---CCCeEEEecCCCeEEe
Confidence 246799999999999999999999999998664 3 3446899999999999999999996 6899999999999998
Q ss_pred cCC
Q 002374 548 GTE 550 (929)
Q Consensus 548 ~~e 550 (929)
-++
T Consensus 486 ~~~ 488 (497)
T 1ya0_A 486 ITE 488 (497)
T ss_dssp ECS
T ss_pred eec
Confidence 665
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 929 | ||||
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-81 |
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 270 bits (692), Expect = 1e-81
Identities = 125/567 (22%), Positives = 219/567 (38%), Gaps = 119/567 (20%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYR-RIEELRAHYSAAVSSAGSNTSQATKVPL 59
+++ Y+ +++ D ++ VE LW ++ +I L+
Sbjct: 36 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN----------------R 79
Query: 60 RSDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSE 119
+ ++++ FL A+GFY +L+ ++ + + L + S+ II +K S+
Sbjct: 80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAI 139
Query: 120 V----KKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPH 175
V C CL++LGD+ARY+ + + A SYY AA L PS+G P+
Sbjct: 140 VKPQSSSCSYICQHCLVHLGDIARYRN----------QTSQAESYYRHAAQLVPSNGQPY 189
Query: 176 HQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTA 235
+QLAILAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 190 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT------- 242
Query: 236 KEAGRLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTS 295
+ + F F++ +G ++ S
Sbjct: 243 -------------------------------------KWGVSDFIKAFIKFHGHVYLSKS 265
Query: 296 LETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENEN 355
LE + + + ELL +V + I +F +H+L+ +
Sbjct: 266 LEKLSPLREKLEEQFKELLFQKAFNSQ-----------QLVHVTVINLFQLHHLRDFSNE 314
Query: 356 QTYAEIVQRAVLLQNAFTAVFELMGHIIERC----MQLSDPSSSYLLPGVLVFVEWLACY 411
Q L A+F I+ +C + ++Y LP V V ++WL
Sbjct: 315 TEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLR 374
Query: 412 PDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETE 471
P + + DE R W IS LN ++ +
Sbjct: 375 PRVFQEAVVDE-----RQYIWPWLISLLNSFHPH-------------------EEDLSSI 410
Query: 472 NRLALWEDIELRGFLPLLPAQTILDFSRK--ISFGGDGNKERKDRVKRIFAAGKALANVI 529
+ L E+ EL+GFL L P+ LDFS+ G ++R+ R +R+ + GK +A+
Sbjct: 411 SATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIAD-- 468
Query: 530 MVDQKPVCFDSKVKKFVIGTEPLDDIT 556
+ + +++V K + TE + I
Sbjct: 469 -NQPRLIQCENEVGKLLFITEIPELIL 494
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 929 | |||
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 94.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.35 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 93.88 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 93.83 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 93.71 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 93.38 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 92.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 92.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 92.01 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 91.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 90.57 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 90.56 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 89.78 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 86.4 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 85.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 85.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 85.01 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 84.35 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 83.61 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 82.44 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 81.17 |
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-61 Score=556.17 Aligned_cols=443 Identities=27% Similarity=0.442 Sum_probs=331.2
Q ss_pred CHHHHHHHHhcChhhhhhchHHHHHHHHH-HHHHHHHHHHHHHhhhccCCCCcccccCCCchhhHHHHHHHHHHHHHHHH
Q 002374 1 MRENYEAIILEDHAFSEQHNVEYALWQLH-YRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEAT 79 (929)
Q Consensus 1 lRe~ye~iIl~D~~fa~~~~VE~~LWk~h-Yk~Ie~fRk~ik~~~~~~~s~~~Q~~k~~~~~~~~rkl~~~f~~fLk~a~ 79 (929)
++++|+++|+.||+|+..+++|+.||+.+ |..|+.+|+.++. .++ ....++...+..||.+++
T Consensus 36 l~eaye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~------------~~~----~~~~~~~~~~~~~l~~a~ 99 (497)
T d1ya0a1 36 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN------------RAN----PNRSEVQANLSLFLEAAS 99 (497)
T ss_dssp HHHHHHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC------------SSC----TTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccc------------ccC----ccHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999955 5579999987652 111 122356677899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccccccccccCCCCc---h-hhhhhHHHHHHHHHHhcchhhhhhhhcCCCCccccHH
Q 002374 80 GFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKS---S-EVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYA 155 (929)
Q Consensus 80 ~FY~~LI~~L~~~y~l~l~~~~~~~~~~~v~~kd~~~s---~-~~k~al~schrCLi~LGDLaRYr~~~~~~~~~~~~~~ 155 (929)
+||..+|..+++.|++++...........+..+.+... . ..+.+...||+|+++|||+.||+. +|+
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~----------~~~ 169 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRN----------QTS 169 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTT----------CHH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcc----------cHH
Confidence 99999999999999987643322222222222221111 1 122345689999999999999985 567
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHhhhhhcccccccccc
Q 002374 156 AASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTA 235 (929)
Q Consensus 156 ~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~~~~ql~~~~k~~~~ 235 (929)
+|+.||.+|+.+.|++|++|||||+|+...++..+|+|||.|||++..||+.|+.||..+|+++++.+....
T Consensus 170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~~-------- 241 (497)
T d1ya0a1 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK-------- 241 (497)
T ss_dssp HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCCC--------
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999875431100
Q ss_pred cccccccCCCCCcccccccccccccchhhhhhcccchHHHHHHHHHHHHHHhccccccCChhHHHHHHHHHHHHHHHHhc
Q 002374 236 KEAGRLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCELLS 315 (929)
Q Consensus 236 ~~p~r~~~~~~g~~e~rl~~~d~~~e~~~~k~~~~s~~E~~k~f~~~FV~lhGiLFtk~~lEtF~~~l~~~l~~L~~lL~ 315 (929)
+ + +..+.|+.+|+++||++|+++++++|.++...++.+|..++.
T Consensus 242 ----~-----------~---------------------~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 285 (497)
T d1ya0a1 242 ----T-----------K---------------------WGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLF 285 (497)
T ss_dssp ----S-----------S---------------------CCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred ----c-----------c---------------------cccchHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence 0 0 012468899999999999999999999999999999999997
Q ss_pred CCCccccccCCCcccchHHHHHHHHHHHHhhccCCccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhc---CC
Q 002374 316 SGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNA-FTAVFELMGHIIERCMQL---SD 391 (929)
Q Consensus 316 ~~~~~el~~g~~~~~~a~~llqlvaI~Ifavhnl~k~s~~qs~aei~qrs~ll~~A-l~~Af~~~s~ll~r~~ql---~D 391 (929)
.... +...++++++||||++|+++............+.....+.+ +.+.+.+++.++..+... .+
T Consensus 286 ~~~~-----------~~~~l~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (497)
T d1ya0a1 286 QKAF-----------NSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEE 354 (497)
T ss_dssp TTCS-----------CHHHHHHHHHHHHHHHHHHSCGGGGTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCSS
T ss_pred cCCC-----------cHHHHHHHHHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 6532 33579999999999999876533211111111222223333 444567778887776543 23
Q ss_pred CCCCCCcchhHHHHHHhhcCccccCCCChhhhhhhhccccHHHHHHHHHHhhhcCCCCCCCcccchhhcccCCccccccc
Q 002374 392 PSSSYLLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETE 471 (929)
Q Consensus 392 pn~~~lLPAVlVfLdWL~~~Pd~~~~~e~de~q~~~~~~pW~~La~lLNtLl~~~~~~id~~~de~~f~~mp~~~e~e~~ 471 (929)
+...++||+|+||++||+|+++++.++..+ +..+||+.++.|||+|.+.. ++.+..
T Consensus 355 ~~~~~~LP~v~v~~~WL~~~~~~~~~~~~~-----~~~~~W~~la~lLN~L~~~~-------------------~~~~~~ 410 (497)
T d1ya0a1 355 SYNAYPLPAVKVSMDWLRLRPRVFQEAVVD-----ERQYIWPWLISLLNSFHPHE-------------------EDLSSI 410 (497)
T ss_dssp CSSSSSHHHHHHHHHHHTTCGGGGGCHHHH-----TTTTSHHHHHHHHGGGCCBS-------------------CCCC-C
T ss_pred cchhHHHHHHHHHHHHHHHCccccccccch-----hHhhHHHHHHHHHHHhhccC-------------------cccCcc
Confidence 456789999999999999999999886443 45789999999999997542 112223
Q ss_pred cccCCchhhhhccCcCCCCCCCCCCCCCCCCCC--CCchhhhhhHHHHHHHHHHHHhccccCCCccEEEcCCCcEEEccC
Q 002374 472 NRLALWEDIELRGFLPLLPAQTILDFSRKISFG--GDGNKERKDRVKRIFAAGKALANVIMVDQKPVCFDSKVKKFVIGT 549 (929)
Q Consensus 472 ~~~pLPEDf~LRGFlPL~~a~~~l~F~~~~~~~--~De~s~~~~R~~RIL~lG~~LA~~~~~~~~wI~fD~~~rkF~v~~ 549 (929)
..++|||||+||||+|+.+++++++|..++... +++..+...|++||+|+|++||+. .++||.||++.++|..++
T Consensus 411 ~~~~LpED~~lrGf~pl~~~~~~~~f~~~~~~~~~~~~~~~~~~R~~ri~~~g~~la~~---~~~~i~~d~~~~~f~~~~ 487 (497)
T d1ya0a1 411 SATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADN---QPRLIQCENEVGKLLFIT 487 (497)
T ss_dssp CCSCCHHHHHTTTCGGGHHHHTTCCCSSCC------CCHHHHHHHHHHHHHHHHHHHHH---CTTTCEEEEETTEEEEEC
T ss_pred ccCCChhHHHhCCCccchhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHcC---CCCceEeecccCeeeecC
Confidence 578999999999999999999999999877522 224566778999999999999984 789999999999999976
Q ss_pred CC
Q 002374 550 EP 551 (929)
Q Consensus 550 e~ 551 (929)
+.
T Consensus 488 ~~ 489 (497)
T d1ya0a1 488 EI 489 (497)
T ss_dssp SS
T ss_pred CC
Confidence 63
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|