Citrus Sinensis ID: 002388

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------93
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKADIKNSDSDGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVRVLCPFANFLGRACSTVILAD
ccccccccccccccccccccEEEHHHHccccccEEEcccccccccccccccHHHHHcccccccccccEEEEccccccccccccHHHHHccccEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHcccccccccHHHHHHHcccccccccHHHHHHHHHccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEcccccEEEEEEccccccEEEccccccccccccccccccccEEEccccccEEEEcccccccccccHHHHHHcccEEEEEEcccccEEEEccccccHHHHHHHHHHHccHHHHHccccccEEEEcccccccccccEEEEEcc
ccccccccccccEcccccccEEEEEEEEEccEEEEcccEEEEcccccccccHHHHHHHHHHHHHccccEEEEcccccEEcHHHHHHHHcccEEEEEEcccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHEEEccccccccccccccccccccccccccccccccccccccccHcHccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHccccccccccccEEEEccccccHHccccccccccEEcccccccccEEEEcccccccccccEEEccccEEEEccEEEccccccccccccEccccccccccccccccccccccccccccccccccEEcccccccccEEccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHcccEEccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHcccccccEEEEcccccccccEEEEEccccEEEEHHHcccccccccccHHHHHHccccccccccccccccccccccccEEEccccccccEEcccccEEEEEEEEEcccEEEccccEccccccccccHHHHEHHHHHHcccEEEEEcccccEEcccHHHHHHcccEEEEEccccEEEEEEEccccccccccccccccccHHHHHHccccccccccccccHHHHccccEEEcc
mcslpkaggalkpvnggsmEFAHLFCSLLmpevyiedtmkveplmnvggikeTRMKLVCNIcrvkcgacvrcshgtcrtsfhpiCAREARHRLEVWgkygcnnvELRAFCakhsdiqdnsstprtgdpcsaigsescvsnnlhetlsmsKLHKLKfsckngdkigvhtetsdansdrstdsevtgfsdsrlisvptsectnagkpdrsefedvnpsdaLNFTLILKKLIDrgkvnvkdiasdigispdllkttladgtfasdLQCKLVKWLSNHAYLGGLLKNVKLKIKssisskadiknsdsdglmvsesdvadpvavksvpprrrtkssirilrddkmvssseeifsgngiaadkdevkveqldgeepaihnkvstpdcteksptdptgsedslargspmsegsaakpsdcgffescqseeaalpdqinllnvdqenpicssvdtlvpyfinakpssgffwhpyihkslqmqsgllsgnkvhksdgdteisrleasstasvccnhqgrhskcndmscksdgvNLEQVFKARTrgvlelsptdevegEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSrvavprilsdknsdslqsvsdfskehprscdicrrsetilnpilicsgckvavHLDCYRnakestgpwYCELCEELLssrssgapsvnfwekpyfvaecslcggttgafrksangqWVHAFCAEWVFestfrrgqvnpvagmeafpkgidvccicrhkhgicikcnygncqttfhptcarsagfylnvkstggnfqhkayCEKHSLEQKMKAETQKHGVEELKGIKQIRVRVLCPFANFLGRACSTVILAD
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHsdiqdnsstprtGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVhtetsdansdrstdsevtgfsdsrlisvptsectnagkpdrsefedvnpsDALNFTLILKKLIDRGKVNVKdiasdigispdLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSIsskadiknsdsdglmvsesdvadpvavksvpprrrtkssirilrddkmvssseeifsgngiaadkdeVKVEQLDGEepaihnkvstpdcteksptdptgsedslARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKArtrgvlelsptdevEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNqeidvargrrwDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSrvavprilsdknsdslqsvsdfskehprscDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVeelkgikqiRVRVLCPFAnflgracsTVILAD
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGllknvklkikssisskadiknsdsdGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEaqavlaaataaaaaSSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYcelceellssrssGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVRVLCPFANFLGRACSTVILAD
****************GSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKH********************************************************************************************************ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKI*****************************************************************************************************************************************LPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQM*****************************VCC****************DGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELR*******************************************************************************************************CDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCE****************VEELKGIKQIRVRVLCPFANFLGRACSTVIL**
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAK***********************************************************************************************************NFTLILKKLIDRGKVNVKD*A*****************TFASDLQCKLVKW********************************************************************************************************************************************************************************TLVPYFINAKPSSGFFWHPYI********************************************************************************GEIIYFQHRLLG***SRKRLADNLVC******************************************************AAAAASSRISSFRKDSLEESASQENLLKLS*********************************************EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGA***NFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHS******************************FANFLGRACSTVILA*
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSD***************AIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHT****************GFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKADIKNSDSDGLMVSESDVAD**************SSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVS********************************PSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREA********************************************ENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDK******************CDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVRVLCPFANFLGRACSTVILAD
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKH***********************************SKL***KFSC*********************************************************SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSS***************MVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDG******************************RGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVH*********************************SCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQ************VLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELL****************YFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKH****************************LCPFANFLGRACSTVILAD
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKADIKNSDSDGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVRVLCPFANFLGRACSTVILAD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query929 2.2.26 [Sep-21-2011]
P55201 1214 Peregrin OS=Homo sapiens yes no 0.214 0.163 0.298 6e-21
Q12311 748 NuA3 HAT complex componen yes no 0.232 0.288 0.310 1e-20
O95696 1058 Bromodomain-containing pr no no 0.160 0.140 0.344 5e-20
O74759 767 Mst2 complex subunit nto1 yes no 0.172 0.208 0.316 2e-19
Q9ULD4 1205 Bromodomain and PHD finge no no 0.160 0.123 0.322 4e-19
Q9C5X41062 Histone-lysine N-methyltr no no 0.141 0.123 0.34 4e-18
Q7YZH1 3241 PHD finger protein rhinoc no no 0.184 0.052 0.277 5e-18
P0CB221083 Histone-lysine N-methyltr no no 0.092 0.079 0.454 6e-17
Q6IE82823 Protein Jade-3 OS=Mus mus no no 0.124 0.140 0.382 8e-17
Q20318 1042 Protein lin-49 OS=Caenorh yes no 0.182 0.163 0.301 2e-16
>sp|P55201|BRPF1_HUMAN Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2 Back     alignment and function desciption
 Score =  103 bits (257), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 39/238 (16%)

Query: 669 VMSRAKETLSRVAVPRILSDKNSDSLQSVSDF---SKEHPRS-------CDICRRSE-TI 717
           +M+  ++T     +P+ + +   D L+  S F   +K  P +       C IC   E   
Sbjct: 227 IMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQN 286

Query: 718 LNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAEC 777
            N IL C  C +AVH +CY       G W C  C                 + P    +C
Sbjct: 287 SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRC----------------LQSPSRAVDC 330

Query: 778 SLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQ-VNPVAGMEAFP--KGIDVCCICR 834
           +LC    GAF+++ +G+W H  CA W+ E  F     + P+  +E  P  +    C IC+
Sbjct: 331 ALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICK 390

Query: 835 HK-HGICIKCNYGNCQTTFHPTCARSAGFYLN---VKSTGGN-----FQHKAYCEKHS 883
            +  G CI+C+  NC T FH TCA+ AG Y+    V+ TG N      +  AYC+ H+
Sbjct: 391 QRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHT 448
Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity. Positively regulates the transcription of RUNX1 and RUNX2.
Homo sapiens (taxid: 9606)
>sp|Q12311|NTO1_YEAST NuA3 HAT complex component NTO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NTO1 PE=1 SV=1 Back     alignment and function description
>sp|O95696|BRD1_HUMAN Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1 Back     alignment and function description
>sp|O74759|NTO1_SCHPO Mst2 complex subunit nto1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nto1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2 Back     alignment and function description
>sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2 Back     alignment and function description
>sp|Q7YZH1|RNO_DROME PHD finger protein rhinoceros OS=Drosophila melanogaster GN=rno PE=1 SV=1 Back     alignment and function description
>sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1 Back     alignment and function description
>sp|Q6IE82|JADE3_MOUSE Protein Jade-3 OS=Mus musculus GN=Phf16 PE=2 SV=1 Back     alignment and function description
>sp|Q20318|LIN49_CAEEL Protein lin-49 OS=Caenorhabditis elegans GN=lin-49 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query929
255545554 1478 phd finger protein, putative [Ricinus co 0.930 0.584 0.597 0.0
356518511 1428 PREDICTED: uncharacterized protein LOC10 0.928 0.604 0.541 0.0
224084824 1429 predicted protein [Populus trichocarpa] 0.912 0.593 0.549 0.0
449445230 1431 PREDICTED: uncharacterized protein LOC10 0.904 0.587 0.529 0.0
449479909 1403 PREDICTED: uncharacterized LOC101212864 0.874 0.578 0.522 0.0
357461689 1428 Protein Jade-1 [Medicago truncatula] gi| 0.935 0.608 0.504 0.0
297839639 1426 PHD finger family protein [Arabidopsis l 0.910 0.593 0.465 0.0
302141882 1535 unnamed protein product [Vitis vinifera] 0.555 0.336 0.656 0.0
357461691 1133 Protein Jade-1 [Medicago truncatula] gi| 0.817 0.669 0.482 0.0
12323292 1506 putative phorbol ester / diacylglycerol 0.907 0.559 0.435 0.0
>gi|255545554|ref|XP_002513837.1| phd finger protein, putative [Ricinus communis] gi|223546923|gb|EEF48420.1| phd finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1022 bits (2643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/931 (59%), Positives = 668/931 (71%), Gaps = 67/931 (7%)

Query: 5    PKAGGALKPVNGGS----MEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCN 60
            PK GGALKP+ G S    +EFAHLFCSL  PEVY+ED  K+E +M+V  IKETR KLVCN
Sbjct: 395  PKQGGALKPIGGESSGSILEFAHLFCSLWTPEVYVEDLTKMEKIMDVHEIKETRRKLVCN 454

Query: 61   ICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNS 120
            +C+VKCG CVRCSHGTCRT+FHPICAREARHR+EVWGKYG  NVELRAFC+KHS+  D S
Sbjct: 455  VCKVKCGVCVRCSHGTCRTAFHPICAREARHRMEVWGKYGYENVELRAFCSKHSEFPDGS 514

Query: 121  STPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTD 180
            +  + G   ++  S++  +N +  T    + HKLK   +NGDK+ VH ET D  SD+S D
Sbjct: 515  NL-QLGKITAS--SDTSTANCIQTTSLTDRQHKLKIG-RNGDKLAVHVETRDTVSDKSGD 570

Query: 181  SEV--TGFSDSRLISVPTSEC------TNAGKPDRSEFEDVNPSDALNFTLILKKLIDRG 232
            +E    G SDSRL  +  S+C      +N G  +R + ED N S++L+F L+LK+LIDRG
Sbjct: 571  NESREIGLSDSRLDDLLISDCADGDHVSNMGLSERHDKEDPNISNSLDFALLLKQLIDRG 630

Query: 233  KVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSI 292
            KVN+KD+A +IGISPD L +TL D     DLQCK+VKWL NHAY+G   KN+++K+ S+I
Sbjct: 631  KVNLKDVALEIGISPDSLLSTL-DVILVPDLQCKIVKWLGNHAYMGSSHKNLRIKLNSTI 689

Query: 293  SSKADIK-NSDSDGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGN 351
             S+ +++ N  SD + +SESD+ D VAVKSVPPRRRTKS IRI+RD+K+  SSEE+ S +
Sbjct: 690  LSRDEMEVNDHSDIVTLSESDITDHVAVKSVPPRRRTKSKIRIMRDNKLTCSSEELLSNS 749

Query: 352  GIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPS 411
            G+    DEVKV+Q   EE  I  +VS P                              PS
Sbjct: 750  GMLL--DEVKVDQAVCEEREISTEVS-PKVI-----------------------FLDNPS 783

Query: 412  DCGFFESCQSEEAALP--DQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHK 469
             C   E  +S+ A L   D IN       N + S + +++P     + SS F+ HPYI K
Sbjct: 784  GCTLSEKVESQPAVLQHGDSINA------NTVYSDMISVLPDLNKVQGSSSFYMHPYIRK 837

Query: 470  S-LQMQSGLLSGNKVHKSDG--DTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNL 526
              +Q+QSGLL  + V  ++G    E   LE SS AS CC+HQ  HS  ND +CK D VN 
Sbjct: 838  KFMQLQSGLLLRDNVCGAEGWRVGETCCLEPSSNASDCCDHQNTHSNRND-TCKFDEVNS 896

Query: 527  EQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVA 586
             Q+ KA+  GV ELSP DEVEGEI+YFQ RLLGNA +RKR  DNL+C+  K+L  EID  
Sbjct: 897  GQLIKAKRLGVHELSPADEVEGEIMYFQDRLLGNAIARKRFTDNLICEIAKSLPHEIDKT 956

Query: 587  RGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEE 646
              +RWDAV VNQYL ELREAKKQGRKER+HKEAQAVLAAATAAAAASSRISSFRKD+ +E
Sbjct: 957  SAQRWDAVFVNQYLNELREAKKQGRKERKHKEAQAVLAAATAAAAASSRISSFRKDAYDE 1016

Query: 647  SASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPR 706
            S +QE    +      A ISSQ+M R KETLSRVAVPR  S+K SDS+QS S+FSKEHPR
Sbjct: 1017 STNQEVSTSV------AGISSQLMPRPKETLSRVAVPRNSSEKYSDSVQSGSEFSKEHPR 1070

Query: 707  SCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVN 766
            SCDICRRSET+LNPIL+CS CKVAVHLDCYR+ KESTGPWYCELCEELLSS+ S A S+N
Sbjct: 1071 SCDICRRSETVLNPILVCSSCKVAVHLDCYRSVKESTGPWYCELCEELLSSKCSAAASLN 1130

Query: 767  FWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKG 826
            FWEKPYFVAEC LCGGTTGAFRKSA+ QWVHAFCAEWVFE TFRRGQVNPV GME   KG
Sbjct: 1131 FWEKPYFVAECGLCGGTTGAFRKSADNQWVHAFCAEWVFEPTFRRGQVNPVDGMETITKG 1190

Query: 827  IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQ 886
            ID+C ICRHKHG+CIKC+YG+CQTTFHP+CARSAGFY+NVK+  G  QHKAYCE+H LEQ
Sbjct: 1191 IDICFICRHKHGVCIKCSYGHCQTTFHPSCARSAGFYMNVKTLNGKLQHKAYCERHGLEQ 1250

Query: 887  KMKAETQKHGVEELKGIKQIRV-----RVLC 912
            + KA+TQKHG EELK +KQIRV     R+LC
Sbjct: 1251 RAKADTQKHGAEELKSMKQIRVELERLRLLC 1281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356518511|ref|XP_003527922.1| PREDICTED: uncharacterized protein LOC100777481 [Glycine max] Back     alignment and taxonomy information
>gi|224084824|ref|XP_002307412.1| predicted protein [Populus trichocarpa] gi|222856861|gb|EEE94408.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449445230|ref|XP_004140376.1| PREDICTED: uncharacterized protein LOC101212864 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479909|ref|XP_004155743.1| PREDICTED: uncharacterized LOC101212864 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357461689|ref|XP_003601126.1| Protein Jade-1 [Medicago truncatula] gi|355490174|gb|AES71377.1| Protein Jade-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297839639|ref|XP_002887701.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297333542|gb|EFH63960.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|302141882|emb|CBI19085.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357461691|ref|XP_003601127.1| Protein Jade-1 [Medicago truncatula] gi|355490175|gb|AES71378.1| Protein Jade-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|12323292|gb|AAG51624.1|AC012193_6 putative phorbol ester / diacylglycerol binding protein; 61157-67783 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query929
SGD|S000006235 748 NTO1 "Subunit of the NuA3 hist 0.232 0.288 0.298 7.4e-18
CGD|CAL0003263 759 orf19.5910 [Candida albicans ( 0.176 0.216 0.328 1.3e-17
TAIR|locus:20659231062 ATX1 "homologue of trithorax" 0.141 0.123 0.34 7.5e-17
UNIPROTKB|F1SQG0 1214 BRPF1 "Uncharacterized protein 0.231 0.177 0.287 1.5e-16
RGD|1584828 1246 Brpf1 "bromodomain and PHD fin 0.231 0.172 0.287 1.5e-16
UNIPROTKB|I3LMI5 1248 BRPF1 "Uncharacterized protein 0.231 0.172 0.287 1.5e-16
UNIPROTKB|F1P2H3 1138 BRPF1 "Uncharacterized protein 0.231 0.188 0.287 1.7e-16
UNIPROTKB|E1BPS1 1213 BRPF1 "Uncharacterized protein 0.231 0.177 0.284 3.1e-16
UNIPROTKB|P55201 1214 BRPF1 "Peregrin" [Homo sapiens 0.231 0.177 0.284 3.1e-16
UNIPROTKB|E2RH23 1220 BRPF1 "Uncharacterized protein 0.231 0.176 0.284 3.1e-16
SGD|S000006235 NTO1 "Subunit of the NuA3 histone acetyltransferase complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
 Score = 253 (94.1 bits), Expect = 7.4e-18, P = 7.4e-18
 Identities = 71/238 (29%), Positives = 106/238 (44%)

Query:   676 TLSRVAVPRILSD-KNSDSLQSVSDFSKEHPRSCDICRRSETI-LNPILICSGCKVAVHL 733
             T S +A   IL D KN +   S         ++C +C  +++  LN I+ C GC +AVH 
Sbjct:   233 TNSLIARHNILRDCKNYELYGSDDGTGLSMDQACAVCLGTDSDNLNTIVFCDGCDIAVHQ 292

Query:   734 DCYRNAKESTGPWYXXXXXXXXXXXXXGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANG 793
             +CY       G W                   NF       A C +C   TGAF+++  G
Sbjct:   293 ECYGIIFIPEGKWLCRRCMISKN---------NF-------ATCLMCPSHTGAFKQTDTG 336

Query:   794 QWVHAFCAEWVFESTFRR-GQVNPVAGME--AFPKGIDVCCICRHKHGICIKCNYGNCQT 850
              WVH  CA W+ E  F     + P+ G++  +  +    C IC+ K G CI+C   NC T
Sbjct:   337 SWVHNICALWLPELYFSNLHYMEPIEGVQNVSVSRWKLNCYICKKKMGACIQCFQRNCFT 396

Query:   851 TFHPTCARSAGFYLNV-KSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIR 907
              +H TCAR AG Y++  K T        + +K+S+E        +     ++GI + R
Sbjct:   397 AYHVTCARRAGLYMSKGKCTIQELASNQFSQKYSVESFCHKHAPRGWQTSIEGINKAR 454
GO:0046872 "metal ion binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA;IDA
GO:0033100 "NuA3 histone acetyltransferase complex" evidence=IDA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA;IDA
GO:0016573 "histone acetylation" evidence=IPI
GO:0035064 "methylated histone residue binding" evidence=IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0004402 "histone acetyltransferase activity" evidence=IPI
CGD|CAL0003263 orf19.5910 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
TAIR|locus:2065923 ATX1 "homologue of trithorax" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQG0 BRPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1584828 Brpf1 "bromodomain and PHD finger containing, 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LMI5 BRPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2H3 BRPF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPS1 BRPF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P55201 BRPF1 "Peregrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH23 BRPF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015314001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1443 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query929
pfam13832109 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma 1e-40
COG5141 669 COG5141, COG5141, PHD zinc finger-containing prote 3e-27
pfam1377189 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai 2e-24
pfam13832109 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma 3e-22
pfam1377189 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai 3e-14
COG5141669 COG5141, COG5141, PHD zinc finger-containing prote 7e-13
pfam1383133 pfam13831, PHD_2, PHD-finger 2e-10
pfam0062851 pfam00628, PHD, PHD-finger 2e-04
smart0024947 smart00249, PHD, PHD zinc finger 2e-04
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain Back     alignment and domain information 
 Score =  144 bits (366), Expect = 1e-40
 Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 775 AECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGI--DVCCI 832
           AEC LC    GA +K+ +G+WVH  CA +V E  F  G       +   PK      CC 
Sbjct: 1   AECCLCPLRGGALKKTTDGRWVHVLCAIFVPEVRFGNGATMEPIDVSRIPKERWKLKCCF 60

Query: 833 CRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKH 882
           C+ + G CI+C+YG CQT+FH TCAR+AG Y+ ++    N Q  AYC+KH
Sbjct: 61  CKKRSGACIQCSYGRCQTSFHVTCARAAGVYMEIEDW-PNLQVIAYCQKH 109

Length = 109
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain Back     alignment and domain information
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain Back     alignment and domain information
>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain Back     alignment and domain information
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|222406 pfam13831, PHD_2, PHD-finger Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 929
KOG0954893 consensus PHD finger protein [General function pre 100.0
COG5141 669 PHD zinc finger-containing protein [General functi 100.0
KOG0954 893 consensus PHD finger protein [General function pre 99.97
KOG0956 900 consensus PHD finger protein AF10 [General functio 99.97
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 99.97
KOG0957 707 consensus PHD finger protein [General function pre 99.94
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 99.91
KOG0956900 consensus PHD finger protein AF10 [General functio 99.88
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 99.88
COG5141669 PHD zinc finger-containing protein [General functi 99.87
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 99.84
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 99.73
KOG0957707 consensus PHD finger protein [General function pre 99.68
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 99.5
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 98.87
KOG1080 1005 consensus Histone H3 (Lys4) methyltransferase comp 98.79
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 97.7
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.48
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.45
KOG1244336 consensus Predicted transcription factor Requiem/N 97.0
KOG1512381 consensus PHD Zn-finger protein [General function 96.66
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 96.58
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.37
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 96.22
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.17
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 96.12
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 95.25
KOG4299 613 consensus PHD Zn-finger protein [General function 93.86
KOG0825 1134 consensus PHD Zn-finger protein [General function 93.82
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 93.2
KOG1973274 consensus Chromatin remodeling protein, contains P 92.02
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 91.45
TIGR0284480 spore_III_D sporulation transcriptional regulator 91.22
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 88.78
KOG0383 696 consensus Predicted helicase [General function pre 87.35
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 87.27
PF10198131 Ada3: Histone acetyltransferases subunit 3; InterP 87.11
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 84.42
PF0035646 LacI: Bacterial regulatory proteins, lacI family; 83.7
PF0279645 HTH_7: Helix-turn-helix domain of resolvase; Inter 81.48
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-44  Score=408.33  Aligned_cols=517  Identities=30%  Similarity=0.393  Sum_probs=319.8

Q ss_pred             CCCCCCCCcccccCCCCCcHhhHhhcccCceeeccCccccccccccCchhhcccccccccccccCceeeCCCCCCCcccc
Q 002388            3 SLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFH   82 (929)
Q Consensus         3 lCP~~gGALK~T~~G~~~WvHv~CALw~PEv~f~~~~~~epV~~V~~I~~~R~~LkC~iC~~k~GAcIqCs~~~C~~~FH   82 (929)
                      |||++||+||+|.+| ..|||+.||||+|||+|++++.|+||++|+.|+..||.|.|++|+.+.||||||+.+.|.++||
T Consensus       328 LCPkkGGamK~~~sg-T~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fH  406 (893)
T KOG0954|consen  328 LCPKKGGAMKPTKSG-TKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFH  406 (893)
T ss_pred             eccccCCcccccCCC-CeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhcc
Confidence            799999999999988 4999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCceEEeccccCCccceeeecCCCCCCCCCCCCCCCCCCCCCCCCC--ccccccccccccccCccceeeeeccC
Q 002388           83 PICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGS--ESCVSNNLHETLSMSKLHKLKFSCKN  160 (929)
Q Consensus        83 vtCA~~aG~~~e~~~~~g~~~v~~~~fC~~Hr~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~l~~~~l~Qlq~~~~~  160 (929)
                      ++||+++|..|.++.+. .+.+.|++||.+|+.-+...+..+.++.......  .......+....+.+.++++.-.   
T Consensus       407 v~CA~~aG~~~~~~~~~-~D~v~~~s~c~khs~~~~~~s~g~~~e~p~p~~~~p~~~~~e~~~~s~r~q~l~~~e~e---  482 (893)
T KOG0954|consen  407 VTCAFEAGLEMKTILKE-NDEVKFKSYCSKHSDHREGKSLGNEAESPHPRCHLPEQSVGEGHRSSDRAQKLQELEGE---  482 (893)
T ss_pred             chhhhhcCCeeeeeecc-CCchhheeecccccccccccccccccCCCCccccChhhhhhhhhhhhHHHHHHhhcchh---
Confidence            99999999999999754 7788999999999988853322211211111000  00123344445555555555422   


Q ss_pred             CCeeeeeeecCCCCCCCCCCCcccccCCCccccccccccccCCCCCCCCCCCCCCCCcchHHHHHHHHHhhCccccccch
Q 002388          161 GDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIA  240 (929)
Q Consensus       161 gd~~~~~~~t~~~~~n~~~~~ev~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~kli~~gkv~v~d~~  240 (929)
                                .|.-.|.....+...+|.-..+  ++-.-+- ++..+-+..+..+..|.+|.+|+||++|+|||+++++|
T Consensus       483 ----------f~~~v~~~diae~l~~~e~~vs--~iynywk-lkrks~~n~~lippk~d~~~~i~kk~~~~~kv~~kl~a  549 (893)
T KOG0954|consen  483 ----------FYDIVRNEDIAELLSMPEFAVS--AIYNYWK-LKRKSRFNKELIPPKSDEVGLIAKKLEDLGKVRVKLVA  549 (893)
T ss_pred             ----------HhhhhhHHHHHHHhcCchHHHH--HHHHHHH-HhhhccCCCcCCCCcchhccchhhHHHHhhhhhhHHHH
Confidence                      2222222222222223322222  1111111 44455555688899999999999999999999999999


Q ss_pred             hhhccChhhhhhhccccccccch-----------hHHHHHHhhhcccccccccceeeccccccccccc-------ccccC
Q 002388          241 SDIGISPDLLKTTLADGTFASDL-----------QCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKAD-------IKNSD  302 (929)
Q Consensus       241 ~~~gis~~~l~~~~~~~~~~~~~-----------~~k~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  302 (929)
                      -++   +|.+.+-+...|.+--.           |.--..+|-.|.||++.++...++.+.++.+..-       +.-.+
T Consensus       550 hlr---qdlerv~~~~~~~trrekas~s~~ki~eq~f~~ql~l~~q~~~~~~~~~n~~~n~~f~~~~r~tl~~k~~~s~~  626 (893)
T KOG0954|consen  550 HLR---QDLERVRNLCYTKTRREKASNSYAKIDEQLFPDQLLLQHQHMGSSDKGKNLKRNTTFYSERRATLCTKGIVSLD  626 (893)
T ss_pred             HHH---HHHHHhhcccchhcccchhhhhHHHHHhHHHHHHHHHHHHhhcccccchhhhhhccccCCcchhHhhhccccCC
Confidence            988   77776665522222211           1111233678999999999998887666544332       22233


Q ss_pred             CCCcccc---ccCCCCccccccc--------------------CCCccccccceeccCCcccccccceec-CCCcccccc
Q 002388          303 SDGLMVS---ESDVADPVAVKSV--------------------PPRRRTKSSIRILRDDKMVSSSEEIFS-GNGIAADKD  358 (929)
Q Consensus       303 ~~~~~~~---~~~~~~~~~~~~v--------------------p~~~r~k~~~~il~dn~~~cs~e~~~~-~ng~~~~~~  358 (929)
                      +++...+   .--+..+.+++.+                    +.----++|.|+|+.-..+=+-+---+ -|-+..+  
T Consensus       627 ~d~~~~a~q~lq~il~p~~~~~~~~i~n~~r~~~t~n~rkns~~~v~ak~~nnrl~~s~Shsp~~~h~~sp~~~t~s~--  704 (893)
T KOG0954|consen  627 SDILDPAVQKLQSILRPHEINICNNITNNTRCTLTENCRKNSIVVVPAKANNNRLLKSGSHSPAPDHSPSPKNSTVSD--  704 (893)
T ss_pred             ccccCHHHHHhhcccCcchhhhhhccccCcccccChhhccCcceeeecccccCccccCCCcCCccccCCCcCCCccch--
Confidence            4443221   1112222222111                    000001222233322222111100000 0000000  


Q ss_pred             hhhhcccCCCCcccCccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccccccccchhhccc---cC
Q 002388          359 EVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLL---NV  435 (929)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  435 (929)
                             ++.  .-.+-|..|+       +...++.    ++.+                     .+.+-+.++-   |+
T Consensus       705 -------~~~--h~gk~g~~pr-------~d~~s~s----asss---------------------~n~ksq~~skirsn~  743 (893)
T KOG0954|consen  705 -------QKV--HHGKSGVIPR-------DDHGSQS----ASSS---------------------SNVKSQNASKIRSNS  743 (893)
T ss_pred             -------hhc--CCccCCCCcc-------ccccccc----cccc---------------------cCcccccccccccCc
Confidence                   000  0001111111       1111100    0000                     0111111111   33


Q ss_pred             CCCCCCCCCCCCccccccCCCCCCccccchhhhhh-hccccCccCCCcccccCCcccccccccccCCCcccCccCccCcc
Q 002388          436 DQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKS-LQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKC  514 (929)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (929)
                      .++--.-+...+.++.++|.+.+.+|..|-||++. ..+-...+++     ...+..+.+|..+..-+.=.-..++++..
T Consensus       744 s~~s~n~ni~~~~sss~~~~~~~p~fsph~~~~~s~s~s~~e~~sk-----s~~~s~~~~~kq~y~~~~~~~~~~~q~~g  818 (893)
T KOG0954|consen  744 SQNSGNGNIPNPISSSLFNQEAYPGFSPHRYIHKSLSESGKEQTSK-----SSTDSDVARMKQTYTHLAGSEEGNKQLQG  818 (893)
T ss_pred             ccccCCCcCCCCcchhhhccccCCCCCcchhhhhhhhhhccccccc-----ccccCCcchhhheecccccccchhhHHHH
Confidence            33322223346777799999999999999999999 5554444332     34445555554222111111222222222


Q ss_pred             CCCcccCCccchHHHHHhhhccccccCCCcchhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhcchhHH
Q 002388          515 NDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAV  594 (929)
Q Consensus       515 ~~~~~~~~~~~~~q~~~~~~~~~~~~~p~de~e~E~~~~q~~ll~~~~~~~~~~~~lv~~v~k~~~~e~~~~~~r~~d~~  594 (929)
                              ...+-|+++|+-+|+++.+|.|+.|+|.+|.|..+++.+..+++..+++..+++++++.|++....|+||..
T Consensus       819 --------~e~~~~~s~~~p~~~~d~s~~D~e~~~~~~~q~~~~g~~r~rkqssd~~n~~~asr~~~~~~~~~g~~~~~s  890 (893)
T KOG0954|consen  819 --------AETFLQLSKARPLGILDLSPEDEEEGELLYYQLQLLGTARSRKQSSDNLNYEVASRLPLEIDEQHGRRWDDS  890 (893)
T ss_pred             --------HHHHHHhhccCCcccccCCCCchhhhhHHhhhhccccceecccccccCcChhhhccCCCccccccCcCcchh
Confidence                    367889999999999999999999999999999999999999999999999999999999999999999965


Q ss_pred             HH
Q 002388          595 LV  596 (929)
Q Consensus       595 ~~  596 (929)
                      ++
T Consensus       891 ~~  892 (893)
T KOG0954|consen  891 LV  892 (893)
T ss_pred             hc
Confidence            43

>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes [] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query929
2lq6_A87 Solution Structure Of Brd1 Phd2 Finger Length = 87 1e-04
>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger Length = 87 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 830 CCICRHKH-GICIKCNYGNCQTTFHPTCARSAGFYLNVKS----TGG----NFQHKAYCE 880
           C +C+ K  G  I+C+  NC T FH TCA+ AG Y+ ++     TGG    + +  AYC+
Sbjct: 20  CYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCD 79
Query: 881 KHS 883
            H+
Sbjct: 80  VHT 82

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query929
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 9e-10
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 6e-09
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 4e-08
2yt5_A66 Metal-response element-binding transcription facto 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
 Score = 54.9 bits (132), Expect = 9e-10
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 708 CDICRRSETI-LNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 753
           C IC   E+   N IL C  C +AVH +CY       G W C  C +
Sbjct: 19  CSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query929
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 99.58
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 99.2
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 98.81
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 98.64
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 98.46
2yt5_A66 Metal-response element-binding transcription facto 98.44
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.36
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 98.27
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 98.21
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 98.17
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 98.16
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 98.12
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 98.09
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 98.08
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 98.04
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 98.0
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.86
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.85
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 97.8
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.79
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 97.71
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 97.65
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 97.62
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 97.61
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.58
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 97.56
2k16_A75 Transcription initiation factor TFIID subunit 3; p 97.55
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 97.54
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 97.52
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 97.48
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.46
1weu_A91 Inhibitor of growth family, member 4; structural g 97.44
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 97.29
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 97.23
1we9_A64 PHD finger family protein; structural genomics, PH 97.21
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 97.12
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 97.09
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.07
3o70_A68 PHD finger protein 13; PHF13, structural genomics 96.93
1x4i_A70 Inhibitor of growth protein 3; structural genomics 96.91
1wee_A72 PHD finger family protein; structural genomics, PH 96.8
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 96.68
1wew_A78 DNA-binding family protein; structural genomics, P 96.68
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 96.47
1wem_A76 Death associated transcription factor 1; structura 96.41
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 96.12
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 96.1
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 96.06
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 95.8
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 95.73
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 95.51
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 94.84
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 94.45
3kv5_D 488 JMJC domain-containing histone demethylation prote 92.6
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 92.03
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 91.73
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 90.74
1wew_A78 DNA-binding family protein; structural genomics, P 89.46
1we9_A64 PHD finger family protein; structural genomics, PH 88.03
1wem_A76 Death associated transcription factor 1; structura 87.86
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 86.75
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 85.89
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 85.5
1weu_A91 Inhibitor of growth family, member 4; structural g 85.26
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 84.91
3o70_A68 PHD finger protein 13; PHF13, structural genomics 84.43
1wil_A89 KIAA1045 protein; ring finger domain, structural g 84.17
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 82.29
1wee_A72 PHD finger family protein; structural genomics, PH 82.27
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 82.27
2k16_A75 Transcription initiation factor TFIID subunit 3; p 81.76
2l0k_A93 Stage III sporulation protein D; SPOIIID, solution 81.42
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 81.24
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 80.39
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
Probab=99.58  E-value=7.1e-16  Score=139.44  Aligned_cols=71  Identities=30%  Similarity=0.551  Sum_probs=60.0

Q ss_pred             cCchhhcccccccccccc-cCceeeCCCCCCCcccchhhhhhcCceEEeccc------cCCccceeeecCCCCCCCCC
Q 002388           48 GGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICAREARHRLEVWGK------YGCNNVELRAFCAKHSDIQD  118 (929)
Q Consensus        48 ~~I~~~R~~LkC~iC~~k-~GAcIqCs~~~C~~~FHvtCA~~aG~~~e~~~~------~g~~~v~~~~fC~~Hr~~~~  118 (929)
                      -+||++||+|+|+||+++ .||||||+.++|.++||++||+++|++|++...      .....+.+.+||++|+|...
T Consensus         9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPpg~   86 (87)
T 2lq6_A            9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPGS   86 (87)
T ss_dssp             CCCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSSSC
T ss_pred             cCCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCcCC
Confidence            368999999999999987 599999999999999999999999999987531      11233568999999999754
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis} Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 929
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 7e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 2e-04
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 2e-04
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 6e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 0.001
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 0.002
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (100), Expect = 7e-06
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 698 SDFSKEHPRSCDICRRSETI-LNPILICSGCKVAVHLDCYR------NAKESTGPWYCEL 750
            DF+ E   +C +CR+      N ++ C  C    H DC++         +    WYC  
Sbjct: 9   DDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCAR 68

Query: 751 CEELLSSRSSGAPS 764
           C   +   +     
Sbjct: 69  CTRQMKRMAQKNQK 82
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query929
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.08
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.9
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.81
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.72
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.72
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.56
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.42
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.18
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.14
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 96.91
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.45
d1wema_76 Death associated transcription factor 1, Datf1 (DI 88.35
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 84.7
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 84.45
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 83.22
d1nd9a_49 N-terminal subdomain of bacterial translation init 82.75
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 81.64
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 81.35
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 80.69
d1efaa159 Lac repressor (LacR), N-terminal domain {Escherich 80.21
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 80.05
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=3.7e-07  Score=79.87  Aligned_cols=57  Identities=26%  Similarity=0.666  Sum_probs=45.6

Q ss_pred             CCCCCCCcCcccCCCCC-CCCCEEEecccCcccccccccCc------cCCCCceeccccccccc
Q 002388          700 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNA------KESTGPWYCELCEELLS  756 (929)
Q Consensus       700 ~ske~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi~------~~p~g~WlCd~C~~~~~  756 (929)
                      +..+..+.|.||+.... ..+.||+|++|...||..|+++.      .++++.|+|..|.....
T Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~   74 (88)
T d1weva_          11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             ccCcCcCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHh
Confidence            44456688999998653 46789999999999999999964      35677999999986533
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure