Citrus Sinensis ID: 002397

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------93
MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIQNPQLPANLPQNLQQQQQQQHIMGQNQQQNLMQTQLPDPINQNLQMSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV
cccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccEEEEEccccccccccccEEEHHHHHHccccccccccccccEEEEEEccccEEEEEEEEEcccccEEccccccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccccccccEEEHHHHHHHHHccccccccEEEEEEEccccccEEEEEEEEEEccccccccccccccEEEEEEcccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEEccEEEcccEEEEEEcccccEEEEEEEcccccccccccEEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHcccEEEEEEEEEEEcccccccEEEcEEEEEccccccccccccccEEEEEEccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHccccccccccccccHccccccHcccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccHcccccccccccHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHccccccccccccccccccccEcccccccccccccccccccccccccccccccEEEcccccccEEEcccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccEccccccccccccccccccccEEEEccc
mkkdidgqipnypnlpsKLLCILLNVTLHADTETDEVYAQmtlqpvpsydreaLLRSDlalksnkpqteFFCKTltasdtsthggfsvprraaekifppldfsmqppaqELMARDLHDNIWTFrhiyrgqpkrhlltTGWSLFvsgkrlfagdsvLFIRDEKQQLLLGIRRanrqpanlsssvlssdsMHIGILAAAAHaaannspftvfynpraspsefvVPLAKYYKAVHSNQISLGMRFRMMFEteesgtrrymgtitgisdldpvrwknsqwrnlqvgwdestagekrnrvsiweiepvtapfficpppffrskhprqadddasdLDNVFKrtmpwigddfgvkdsqslpglsLVQWMNMQQNPSLANAMQSsymhslpgsilqnlngglsqmpqqnnlqytgqslpqqvpqidqlaklpstvnplgsnilpqqplgdisqQSRQNMitqnlpsgpvqaqvlqpqnlvqtsnilqqqpsiqnpqlpanlpqNLQQQQQQQHIMGQNQQQNLmqtqlpdpinqnlqmSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDasqsfsrsgtptqmlemhqvtptslpqsnimsqqiansgslnnvqfsqppqqpkleqqqpgilpqmpghmglpashiinpvstagnsaltgaagvgqsvitddnpscstspstnncqrliqptinsrthrsagiGEEVAQSASAllnpsaletmpsnanlvkdlphksdvkpsvnisktqnqgfftpqtylngaatqtdyldtsssttsvclsqndvhlqqnnslsynpqstlrdasqdgevpvdprsnipyganidgplgsmnpdplltkgmmglgkdfsnnissgamlanyensKDAQQELSSSIvsqsfgvpdmafnsidstindssflnggpwapppqfpqrmrtytkv
mkkdidgqipnypnLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTltasdtsthggfsvPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHsnqislgmrFRMMFETEesgtrrymGTITgisdldpvrwkNSQWRnlqvgwdestagekrnRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIQNPQLPANLPQNLQQQQQQQHIMGQNQQQNLMQTQLPDPINQNLQMSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINdssflnggpwapppqfpqrmrtytkv
MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANlsssvlssdsMHIGILaaaahaaaNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIqnpqlpanlpqnlqqqqqqqhimgqnqqqnlmqtqlPDPINQNLQMSDkqiqlhllqklqqqrqsllsqqsalqqpaqliqlqdqqrqlldasqsFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSqppqqpkleqqqpGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVItddnpscstspstnncQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDtsssttsVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV
***********YPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLR***********TEFFCKTLTA*********************************LMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRR*****************MHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFR**************DNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWM************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FFTPQTYLNGAATQ**Y*********************************************************************************************************************************************************
********IPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQP************************FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRR**********************LAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTA********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************A*QTDYLDTS****************************************DPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKD*************************************MAFNSIDSTINDSSFLN********QFPQRMRTYT**
MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIQNPQLPANLP*****************QQNLMQTQLPDPINQNLQMSDKQIQLHLLQKLQ**************QPAQLIQLQDQQRQLLDASQSFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVITD***********NNCQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDY********SVCLSQNDVHLQQNNSLSYNPQ************PVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYEN**********SIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQ********
*****DGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVP*****ALLRSDLA**SNKPQTEFFCKTLTASD****GGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHP**********************************GLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLN************************************************************************************************************************************************************************************************************************************************************************************************PSCST********R*********************QSASA*LNPSALETMPSNANLVKDLPHKSDVKPSVNISKT*NQGFFTPQTYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIQNPQLPANLPQNLQQQQQQQHIMGQNQQQNLMQTQLPDPINQNLQMSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query928 2.2.26 [Sep-21-2011]
Q6Z2W3 1142 Auxin response factor 5 O yes no 0.523 0.425 0.682 0.0
Q0D9R7 1161 Auxin response factor 19 yes no 0.516 0.412 0.716 0.0
Q6YZW0 1116 Auxin response factor 21 no no 0.489 0.406 0.682 1e-177
Q8RYC81086 Auxin response factor 19 yes no 0.399 0.341 0.790 1e-172
A3B9A01055 Auxin response factor 16 no no 0.407 0.358 0.748 1e-166
A2YAA51055 Auxin response factor 16 N/A no 0.407 0.358 0.746 1e-166
P93022 1164 Auxin response factor 7 O no no 0.453 0.361 0.677 1e-158
Q6H6V4908 Auxin response factor 6 O no no 0.405 0.414 0.625 1e-132
A2X1A1908 Auxin response factor 6 O N/A no 0.405 0.414 0.625 1e-132
Q9ZTX8935 Auxin response factor 6 O no no 0.410 0.407 0.605 1e-131
>sp|Q6Z2W3|ARFE_ORYSJ Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2 Back     alignment and function desciption
 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/504 (68%), Positives = 402/504 (79%), Gaps = 18/504 (3%)

Query: 1   MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLA 60
           M+KD+D  +P+YPNLPSKL+C+L  V LHAD +TDEVYAQMTLQPV +Y +EAL  S+LA
Sbjct: 78  MQKDVDAHVPSYPNLPSKLICLLHGVNLHADPDTDEVYAQMTLQPVNTYGKEALQISELA 137

Query: 61  LKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNI 120
           LK  +PQ EFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEL ARD+HDN+
Sbjct: 138 LKQARPQMEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDIHDNV 197

Query: 121 WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLS 180
           WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSV+ +RDEK QLLLGIRRANRQP N+S
Sbjct: 198 WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVVRDEKHQLLLGIRRANRQPTNIS 257

Query: 181 SSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGM 240
           SSVLSSDSMHIG+LAAAAHAAAN+SPFT+FYNPRASP+EFV+P AKY KA++SNQISLGM
Sbjct: 258 SSVLSSDSMHIGVLAAAAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYSNQISLGM 317

Query: 241 RFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEI 300
           RFRMMFETEE GTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDES AGE+RNRVSIWEI
Sbjct: 318 RFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESAAGERRNRVSIWEI 377

Query: 301 EPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQ----SLPGL 356
           EPV APFF+CP PFF  K PRQ DD+ S+++N+FKR MPW+G++  +KD+Q    + PGL
Sbjct: 378 EPVAAPFFLCPQPFFGVKRPRQLDDE-SEMENLFKRAMPWLGEEVCIKDTQNQNSTAPGL 436

Query: 357 SLVQWMNM--QQNPSLAN-AMQSSYMHSLPGSILQNLNGGL--------SQMPQQNNLQY 405
           SLVQWMNM  QQ+ SLAN A QS Y+ +L    +QNL            + + QQN +Q+
Sbjct: 437 SLVQWMNMNRQQSSSLANTAAQSEYLQALGNPAMQNLAADELARQLYVQNNLLQQNCIQF 496

Query: 406 TGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQV 465
               LPQQ+  ++ L+K    +N LG+ I PQ    D     RQ    Q +P    Q+ +
Sbjct: 497 NSPKLPQQMQTMNDLSKAAIPLNQLGAIINPQDQKQDAVNHQRQQNSIQVIPLSQAQSNL 556

Query: 466 LQPQNLVQTSNILQQQPS-IQNPQ 488
           +Q Q +VQ + + QQ+PS  QNPQ
Sbjct: 557 VQAQVIVQ-NQMQQQKPSPTQNPQ 579
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q0D9R7|ARFS_ORYSJ Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2 Back     alignment and function description
>sp|Q6YZW0|ARFU_ORYSJ Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2 Back     alignment and function description
>sp|Q8RYC8|ARFS_ARATH Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2 Back     alignment and function description
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|A2YAA5|ARFP_ORYSI Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|P93022|ARFG_ARATH Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2 Back     alignment and function description
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function description
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query928
224118764 1113 predicted protein [Populus trichocarpa] 1.0 0.833 0.767 0.0
255557566 1109 Auxin response factor, putative [Ricinus 0.990 0.828 0.737 0.0
73697836 1099 auxin response factor 2 [Gossypium arbor 0.988 0.834 0.712 0.0
359484941 1117 PREDICTED: auxin response factor 5-like 0.996 0.828 0.759 0.0
449522288 1107 PREDICTED: uncharacterized LOC101205542 0.989 0.829 0.691 0.0
47496694 1107 auxin response factor 2 [Cucumis sativus 0.989 0.829 0.690 0.0
297736017 1034 unnamed protein product [Vitis vinifera] 0.924 0.829 0.720 0.0
449470376 1107 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.989 0.829 0.677 0.0
147857971 1096 hypothetical protein VITISV_014723 [Viti 0.964 0.816 0.729 0.0
356520887 1110 PREDICTED: auxin response factor 25-like 0.992 0.829 0.695 0.0
>gi|224118764|ref|XP_002331440.1| predicted protein [Populus trichocarpa] gi|222873654|gb|EEF10785.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1274 bits (3296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/947 (76%), Positives = 797/947 (84%), Gaps = 19/947 (2%)

Query: 1    MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLA 60
            +KKD++ QIPNYPNLPSKLLC+L NVTLHAD ETDEVY QMTLQPV S+D++ALLRSDLA
Sbjct: 60   LKKDVNAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYVQMTLQPVSSFDKDALLRSDLA 119

Query: 61   LKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNI 120
            LKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEK FPPLDFSMQPPAQEL+ARDLHDN+
Sbjct: 120  LKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKTFPPLDFSMQPPAQELVARDLHDNV 179

Query: 121  WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLS 180
            WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLF+RDEKQQLLLGIRRANRQP NLS
Sbjct: 180  WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFMRDEKQQLLLGIRRANRQPTNLS 239

Query: 181  SSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGM 240
            SSVLSSDSMHIGILAAAAHAAANNSPFTV+YNPRASPSEFV+PLAKYYKAV+SNQISLGM
Sbjct: 240  SSVLSSDSMHIGILAAAAHAAANNSPFTVYYNPRASPSEFVIPLAKYYKAVYSNQISLGM 299

Query: 241  RFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEI 300
            RFRMMFETEESGTRR+MGTITGISDLD VRWKNSQWRNLQVGWDESTAGE+RNRVSIWEI
Sbjct: 300  RFRMMFETEESGTRRHMGTITGISDLDAVRWKNSQWRNLQVGWDESTAGERRNRVSIWEI 359

Query: 301  EPVTAPFFICPPPFFRSKHPRQ---ADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLS 357
            EPVTAPFFICPPPFFRSKHPRQ    DDD++D D++FKRTMPW+GDD  +KD Q LPGLS
Sbjct: 360  EPVTAPFFICPPPFFRSKHPRQPGMPDDDSTDFDSLFKRTMPWLGDDIYMKDPQVLPGLS 419

Query: 358  LVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGG-LS--------QMPQQNNLQYTGQ 408
            L Q MNMQQNPSLAN+MQ +YM SL GS+LQNL GG LS        QMPQ NNLQ+  Q
Sbjct: 420  LAQRMNMQQNPSLANSMQPNYMQSLSGSVLQNLPGGDLSRQLGLSSPQMPQPNNLQFNAQ 479

Query: 409  SLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQP 468
             LPQQ  Q+DQL KL S +NPLGS I  QQ +GDI+QQSRQNM+ Q LPS  VQAQ+LQP
Sbjct: 480  RLPQQAQQLDQLPKLQSLLNPLGSIIQSQQQMGDITQQSRQNMMAQTLPSSQVQAQLLQP 539

Query: 469  QNLVQTSNILQQQPSIQNPQLPANLPQNLQ--QQQQQQHIMGQNQQQNLMQTQLPDPINQ 526
            Q L QT+NILQQQPSIQ+ QL  NLPQ L   QQ QQQHIMGQNQQQ+LMQ+QL D +NQ
Sbjct: 540  QTLAQTNNILQQQPSIQSHQLLRNLPQTLHQQQQNQQQHIMGQNQQQSLMQSQLSDQVNQ 599

Query: 527  NLQMSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRSGTP 586
            ++QMSD QIQ  L+QKLQQQ+QS+ +QQSA+ Q  QL QLQD QRQLLDASQSFSRS TP
Sbjct: 600  HMQMSDNQIQSQLMQKLQQQQQSVSAQQSAMHQAGQLGQLQDSQRQLLDASQSFSRSMTP 659

Query: 587  TQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGI--LPQMPGH 644
            +QMLE+ Q TPTSLPQ N + QQ+  + +  N +FS  PQQ K +QQ  GI  L +M GH
Sbjct: 660  SQMLEIPQTTPTSLPQPNTIPQQMTKNNNQTNTRFSHLPQQLKPQQQHSGIMLLSEMAGH 719

Query: 645  MGLPASHIINPVSTAGNSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRTH 704
            MGLP S + N +STAG+S LT AAG GQS ITDD PSCSTSPSTNNC  ++QP IN   H
Sbjct: 720  MGLPPSSMANQLSTAGSSILTAAAGPGQSGITDDVPSCSTSPSTNNCPNIVQPMINGWAH 779

Query: 705  RSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQT 764
            RS  +GE++AQSA  L +PSALET+ SN NLVKDL  KS+VKPS+NISK QN G F+ QT
Sbjct: 780  RSTAMGEDMAQSAVTLFSPSALETVSSNGNLVKDLLQKSEVKPSLNISKNQNPGLFSSQT 839

Query: 765  YLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQ-NNSLSYNPQST-LRDASQDGEVPVDPR 822
            YLNG A Q DYLDTSSSTTSVCLSQNDVHLQQ NNSLSYNPQS  LRDAS DGE+  DPR
Sbjct: 840  YLNGVAAQIDYLDTSSSTTSVCLSQNDVHLQQNNNSLSYNPQSVLLRDASHDGELQGDPR 899

Query: 823  SNIPYGANIDGPLGS-MNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSS 881
            +NI YG NID  L   +N D LLTKGMMGLGKDFSNN SSG ML N ENSKD QQELSS+
Sbjct: 900  NNILYGTNIDSQLVMPINSDHLLTKGMMGLGKDFSNNFSSGGMLTNCENSKDPQQELSSA 959

Query: 882  IVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV 928
            IVS+SFGVPDM FNSIDSTINDSS LN G WAPP Q  QRMRTYTKV
Sbjct: 960  IVSKSFGVPDMPFNSIDSTINDSSLLNRGSWAPPQQQFQRMRTYTKV 1006

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557566|ref|XP_002519813.1| Auxin response factor, putative [Ricinus communis] gi|223541052|gb|EEF42609.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|73697836|gb|AAZ81522.1| auxin response factor 2 [Gossypium arboreum] Back     alignment and taxonomy information
>gi|359484941|ref|XP_002266603.2| PREDICTED: auxin response factor 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449522288|ref|XP_004168159.1| PREDICTED: uncharacterized LOC101205542 [Cucumis sativus] Back     alignment and taxonomy information
>gi|47496694|dbj|BAD19062.1| auxin response factor 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297736017|emb|CBI24055.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449470376|ref|XP_004152893.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101205542 [Cucumis sativus] Back     alignment and taxonomy information
>gi|147857971|emb|CAN80371.1| hypothetical protein VITISV_014723 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356520887|ref|XP_003529091.1| PREDICTED: auxin response factor 25-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query928
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.503 0.430 0.637 3.1e-175
TAIR|locus:2204237935 ARF6 "auxin response factor 6" 0.504 0.500 0.511 2.8e-125
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.497 0.512 0.514 1.2e-119
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.491 0.562 0.513 2.8e-114
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.336 0.363 0.515 3.9e-87
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.341 0.476 0.475 9e-77
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.369 0.435 0.461 6.7e-75
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.387 0.564 0.422 1.4e-73
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.325 0.485 0.475 1.8e-72
TAIR|locus:2057609608 ETT "ETTIN" [Arabidopsis thali 0.306 0.467 0.496 1.3e-70
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1554 (552.1 bits), Expect = 3.1e-175, Sum P(3) = 3.1e-175
 Identities = 310/486 (63%), Positives = 359/486 (73%)

Query:     1 MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLA 60
             M+K  D  IPNYPNLPSKL+C+L +VTLHADTETDEVYAQMTLQPV  YDREALL SD+ 
Sbjct:    57 MQKQTDF-IPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMG 115

Query:    61 LKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNI 120
             LK N+  TEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQE++A+DLHD  
Sbjct:   116 LKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTT 175

Query:   121 WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXX 180
             WTFRHIYRGQPKRHLLTTGWS+FVS KRLFAGDSVLF+RDEK QL+LGIRRANRQ     
Sbjct:   176 WTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLS 235

Query:   181 XXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGM 240
                     MHIGIL        N+SPFT+F+NPRASPSEFVVPLAKY KA+++ Q+SLGM
Sbjct:   236 SSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYA-QVSLGM 294

Query:   241 RFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEI 300
             RFRMMFETE+ G RRYMGT+TGISDLDPVRWK SQWRNLQVGWDESTAG++ +RVSIWEI
Sbjct:   295 RFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEI 354

Query:   301 EPVTAPFFICPPPFFRSKHPRQAD--DDASDLDNVFKRTMPWIGDDFGVKDSQS--LPGL 356
             EPV  PF+ICPPPFFR K+PRQ    DD  D++N FKR MPW+G+DFG+KD+QS   PGL
Sbjct:   355 EPVITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGL 414

Query:   357 SLVQWMNMQQNPSLANAMQSSYMHSLPGSILQ-NLNGGLSQMPQQNNLQYTGQSLPQQVP 415
             SLVQWM+MQQN    N +  S    LP ++   NL    +       L +   +L     
Sbjct:   415 SLVQWMSMQQN----NPLSGSATPQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANS 470

Query:   416 QIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTS 475
             Q ++    P+TVN + S  +  QP    SQQ +Q    Q+      Q Q+ Q Q L  + 
Sbjct:   471 QFNK----PNTVNHI-SQQMQAQPAMVKSQQQQQQQQQQHQHQ---QQQLQQQQQLQMSQ 522

Query:   476 NILQQQ 481
               +QQQ
Sbjct:   523 QQVQQQ 528
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0009733 "response to auxin stimulus" evidence=RCA;IMP;NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0048366 "leaf development" evidence=IGI
GO:0048527 "lateral root development" evidence=IGI;RCA
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0003677 "DNA binding" evidence=IDA
GO:0010311 "lateral root formation" evidence=IGI
GO:0007155 "cell adhesion" evidence=RCA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0046983 "protein dimerization activity" evidence=IDA
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057609 ETT "ETTIN" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0D9R7ARFS_ORYSJNo assigned EC number0.71620.51610.4125yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1640064
hypothetical protein (1113 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query928
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 7e-46
pfam0236297 pfam02362, B3, B3 DNA binding domain 8e-27
smart0101996 smart01019, B3, B3 DNA binding domain 2e-25
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 3e-19
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 7e-09
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 5e-08
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 8e-07
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-06
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-05
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 2e-05
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 2e-05
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 5e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 3e-04
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 6e-04
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 0.001
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.002
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 0.002
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  158 bits (402), Expect = 7e-46
 Identities = 58/84 (69%), Positives = 70/84 (83%), Gaps = 1/84 (1%)

Query: 197 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRY 256
           AAHAA+  SPF VFYNPRAS SEFVVP AKY KA+ +N  S+GMRF+M FETE+S  RR+
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAM-NNPFSVGMRFKMRFETEDSSERRF 59

Query: 257 MGTITGISDLDPVRWKNSQWRNLQ 280
            GTI+G+SDLDP+RW NS+WR+LQ
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 928
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.77
KOG06441113 consensus Uncharacterized conserved protein, conta 99.47
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.28
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.78
KOG35982220 consensus Thyroid hormone receptor-associated prot 93.45
KOG35982220 consensus Thyroid hormone receptor-associated prot 91.31
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=1.2e-35  Score=265.67  Aligned_cols=83  Identities=67%  Similarity=1.128  Sum_probs=81.6

Q ss_pred             HHHHHhcCCcEEEEEcCCCCCCcceeehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeecCCCCCCCCCCc
Q 002397          197 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQW  276 (928)
Q Consensus       197 Aa~aaat~spFtV~YyPRas~sEFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd~DP~rWp~S~W  276 (928)
                      |+|||+++++|+|+||||++++|||||++||++|++ ++|++||||||.||+||+++++|+|||+||+++||+|||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~-~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALN-HPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhc-CCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCc
Confidence            689999999999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             ccee
Q 002397          277 RNLQ  280 (928)
Q Consensus       277 R~Lq  280 (928)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9996

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query928
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 1e-08
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 70  FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRG 129
            F K +T SD        +P+  AEK FP    ++      L   D++  +W FR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72
Query: 130 QPKRHLLTTGWSLFVSGKRLFAGDSVLFIRD--EKQQLLLG 168
             + ++LT GWS FV  K L AGD V F R   + QQL +G
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 113
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query928
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 8e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-04
3lj5_A725 Portal protein, protein GP1; DNA ejection, molecul 2e-04
3lj5_A725 Portal protein, protein GP1; DNA ejection, molecul 6e-04
1uur_A473 Stata protein, STAT protein; transcription activat 9e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  154 bits (389), Expect = 8e-44
 Identities = 41/125 (32%), Positives = 58/125 (46%)

Query: 62  KSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIW 121
            S +     F K +T SD        +P+  AEK FP    ++      L   D++  +W
Sbjct: 5   SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVW 64

Query: 122 TFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSS 181
            FR+ Y    + ++LT GWS FV  K L AGD V F R   Q   L I   +R  ++L +
Sbjct: 65  RFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDA 124

Query: 182 SVLSS 186
           S  SS
Sbjct: 125 SGPSS 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725 Back     alignment and structure
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725 Back     alignment and structure
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query928
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.96
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.79
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.64
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 95.44
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 80.58
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.96  E-value=5.4e-29  Score=235.28  Aligned_cols=112  Identities=32%  Similarity=0.520  Sum_probs=103.8

Q ss_pred             CCcceEEEEEcccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhh
Q 002397           65 KPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFV  144 (928)
Q Consensus        65 ~~~~~~F~KtLTaSDVs~~GrfsVPkr~AE~~FPpLD~s~~~psq~LvakDl~Gk~W~FRhiyRg~prRhlLTTGWS~FV  144 (928)
                      ++..++|+|+||+|||+++++|+||+++|++|||.++.....++++|.++|.+|++|+|||+||+++++|+|++||+.||
T Consensus         8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV   87 (130)
T 1wid_A            8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV   87 (130)
T ss_dssp             CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred             CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence            35778999999999999999999999999999999987666788999999999999999999999899999999999999


Q ss_pred             ccCCCCCCCEEEEEEcc--CccEEEEEEeccCCC
Q 002397          145 SGKRLFAGDSVLFIRDE--KQQLLLGIRRANRQP  176 (928)
Q Consensus       145 reKkLvaGDsVVF~R~e--~GeL~VGIRRA~r~~  176 (928)
                      ++|+|++||+|+|+|.+  ++.|+|+|||+.+..
T Consensus        88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            99999999999999986  467999999998754
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 928
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 9e-37
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 1e-24
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 6e-13
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  132 bits (332), Expect = 9e-37
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 65  KPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFR 124
           +     F K +T SD        +P+  AEK FP    ++      L   D++  +W FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 125 HIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ--QLLLGIRRANRQ 175
           + Y    + ++LT GWS FV  K L AGD V F R   Q  QL +G +  +  
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 113
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query928
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.94
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.78
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.55
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=1.9e-27  Score=216.88  Aligned_cols=109  Identities=33%  Similarity=0.529  Sum_probs=102.1

Q ss_pred             cceEEEEEcccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhcc
Q 002397           67 QTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSG  146 (928)
Q Consensus        67 ~~~~F~KtLTaSDVs~~GrfsVPkr~AE~~FPpLD~s~~~psq~LvakDl~Gk~W~FRhiyRg~prRhlLTTGWS~FVre  146 (928)
                      ..++|+|+||+|||+++|||+||+++|++|||+++...+.++++|.++|.+|++|+|+|+||+..++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHH
Confidence            45799999999999999999999999999999999888889999999999999999999999888889999999999999


Q ss_pred             CCCCCCCEEEEEEc--cCccEEEEEEeccCC
Q 002397          147 KRLFAGDSVLFIRD--EKQQLLLGIRRANRQ  175 (928)
Q Consensus       147 KkLvaGDsVVF~R~--e~GeL~VGIRRA~r~  175 (928)
                      |+|++||+|+|+|+  ++++|+|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             cCCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence            99999999999997  478899999988753
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure