Citrus Sinensis ID: 002420

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-----

MDVSTSPRGGAMASSSFSSSLPANSPEPSLSTPSMKRGAEESASMGAEDDREKTSSTGFDIEEEEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDAEREDEGDRNVARAARRPPGQANRNFAGEGNAEDAGGAPGIAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLLSSASGPVLSSVMPLTETALSLANITLKNALSAVTNLTSEGQEGGLLGQVADVLKGNASEITEAANSTSASLSADLLKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPEDNGGQENGNIDIRRDRNIEIRRDGLQVIPLGPDRALIGMPAVDDINRGALVSGNSNVSEEYDGDEQSDSDRYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSALLSIWVRVILVIILLKDFIN

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEcHHHHHHHHHHccccEEEEccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHcHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHcccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc

mdvstsprggamasssfssslpanspepslstpsmkrgaeesasmgaeddrektsstgfdieeeeeEEEEVCRIcrnpgdpenplrypcacsgsikfvHQDCLLQWLnhsnarqcevckhafsfspvyaenaparlpfQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREiggqdaeredegdrnvaraarrppgqanrnfagegnaedaggapgiagagQMIRRNAENVAARWEMQAARLEAHVEQMFdglddadgaedvpfdelvgmqgpvfhLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLlssasgpvlssvmplTETALSLANITLKNALSAVTNLtsegqegglLGQVADVLKGNASEITEAANSTSASLSADLLKEAtmgtsrlsdvtTLAIGYMFIFSLVFFYLGIVALIRytkgepltmgrfYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERVQffsvsplassLVHWVVGIVYMLQISIFVSLLRGVlrngvlyflrdpadpnynpfrdliddpvhKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATsifpldisvsdpfteipadmlLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALgltdfllprpednggqengnidirrdrnieirrdglqviplgpdraligmpavddinrgalvsgnsnvseeydgdeqsdsdrYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRAlfnaipllpithgvkcndLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSALLSIWVRVILVIILLKDFIN

mdvstsprggamasssfssslpanspepslstpsmKRGAEEsasmgaeddrektsstgfdieeeeeeeEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREiggqdaeredegdrnvaraarrppgqanrnfagegnaedaggapGIAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLLSSASGPVLSSVMPLTETALSLANITLKNALSAVTNLTSEGQEGGLLGQVADVLKGNASEITEAANSTSASLSADLLKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLprpednggqengnidirrdrnieirrdglqviplgpdRALIGMPAVDDINRGALVSGnsnvseeydgdeqsdsdRYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSALLSIWVRVILVIILLKDFIN

MDVSTSPRGGAMAsssfsssLPANSPEPSLSTPSMKRGAEESASMGAEDDREKTSSTGFDIeeeeeeeeeVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDAEREDEGDRNVARAARRPPGQANRNFagegnaedaggapgiagagQMIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLLSSASGPVLSSVMPLTETALSLANITLKNALSAVTNLTSEGQEGGLLGQVADVLKGNASEITEAANSTSASLSADLLKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPEDNGGQengnidirrdrnieirrdgLQVIPLGPDRALIGMPAVDDINRGALVSGNSNVSEEYDGDEQSDSDRYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSAllsiwvrvilviillKDFIN

************************************************************************************LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREI*********************************************************NVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLLSSASGPVLSSVMPLTETALSLANITLKNALSAVTNLTS****GGLLGQVADVL******************************SRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLP**************IRRDRNIEIRRDGLQVIPLGPDRALIGMPAVDDINRGAL********************RYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSALLSIWVRVILVIILLKDFI*

************************************************************************RICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDAEREDEGDRNVARAARRPPGQANRNFAGEGNAEDAGGA*********************EMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLLSSASGPVLSSVMPLTETALSLANITLKNALSAVTNLTSEGQEGGLLGQVADVLKGNASEITEAANSTSASLSADLLKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPEDNG**ENG****RR*********GLQVIPLGPDRALIGMPAV**************************SDRYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSALLSIWVRVILVIILLKDFIN

************************************************************************RICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGG*******************PPGQANRNFAGEGNAEDAGGAPGIAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLLSSASGPVLSSVMPLTETALSLANITLKNALSAVTNLTSEGQEGGLLGQVADVLKGNASEITEAANSTSASLSADLLKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPEDNGGQENGNIDIRRDRNIEIRRDGLQVIPLGPDRALIGMPAVDDINRGALVSGNSNV***********SDRYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSALLSIWVRVILVIILLKDFIN

*******************************************************************EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDAEREDE******************************************RRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLLSSASGPVLSSVMPLTETALSLANITLKNALSAVTNLTSEGQEGGLLGQVADVLKGNASEITEAANSTSASLSADLLKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRP**************************************GMPAV****RGALVSGNS*VSEEYDGDEQSDSDRYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSALLSIWVRVILVIILLKDFIN

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MDVSTSPRGGAMASSSFSSSLPANSPEPSLSTPSMKRGAEESASMGAEDDREKTSSTGFDIEEEEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDAEREDEGDRNVARAARRPPGQANRNFAGEGNAEDAGGAPGIAGAGQMIxxxxxxxxxxxxxxxxxxxxxVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLLSSASGPVLSSVMPLTETALSLANITLKNALSAVTNLTSEGQEGGLLGQVADVLKGNASEITEAANSTSASLSADLLKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPEDNGGQENGNIDIRRDRNIEIRRDGLQVIPLGPDRALIGMPAVDDINRGALVSGNSNVSEEYDGDEQSDSDRYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSALLSIWVRVILVIILLKDFIN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		925	2.2.26 [Sep-21-2011]
Q6ZQ89		909	E3 ubiquitin-protein liga	yes	no	0.324	0.330	0.295	4e-40
O60337		910	E3 ubiquitin-protein liga	yes	no	0.364	0.370	0.304	1e-39
Q5R9W1		910	E3 ubiquitin-protein liga	no	no	0.364	0.370	0.295	3e-38
O60103		1242	ERAD-associated E3 ubiqui	yes	no	0.570	0.425	0.232	4e-34
P40318		1319	ERAD-associated E3 ubiqui	yes	no	0.122	0.085	0.307	1e-15
Q8TCQ1		289	E3 ubiquitin-protein liga	no	no	0.113	0.363	0.362	9e-15
Q6NZQ8		289	E3 ubiquitin-protein liga	no	no	0.118	0.380	0.355	1e-14
Q9DBD2		286	E3 ubiquitin-protein liga	no	no	0.092	0.300	0.395	2e-13
Q0VD59		289	E3 ubiquitin-protein liga	no	no	0.058	0.186	0.537	3e-13
Q5T0T0		291	E3 ubiquitin-protein liga	no	no	0.058	0.185	0.537	3e-13

>sp\|Q6ZQ89\|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2 SV=2	Back alignment and function desciption

 Score =  167 bits (423), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 154/322 (47%), Gaps = 22/322 (6%)

Query: 65  EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124
           +  EE++CR+CR+ G PE PL +PC C+GSIKF+HQ+CL+QWL HS    CE+CKH F+F
Sbjct: 2   DTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAF 61

Query: 125 SPVYAENAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVR 184
           +P+Y+ + P+RLP Q+   G+       ++++   + V   WL ++P     I++  F  
Sbjct: 62  TPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTG 121

Query: 185 SFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRH------------ 232
           S      L L  +ST  +L DCL G  +    +  F+    LR+   H            
Sbjct: 122 SVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAP 181

Query: 233 -LREIGGQDAEREDEGDRNVARAARRPPGQANRN-FAGEG-NAEDAGGAPGIAGAGQMIR 289
                G    E    G+     AA +P   A  N   GE  +A+D           +   
Sbjct: 182 PFNAAGHHQNEAPVGGNGAENPAADQPANPAGENAVLGENPDAQDGQAEEEEEDNEEEDD 241

Query: 290 RNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVL 349
              E+ A       A   A  +  ++ L+    AE++ ++ ++G+ G +  L E+ F V+
Sbjct: 242 AGVEDAA------DANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFL-EHVFWVV 294

Query: 350 ASNMIFLGVVIFLPFSLGRIIL 371
           + N +F+ V  F P+ +G   L
Sbjct: 295 SLNTLFILVFAFCPYHIGHFSL 316

E3 ubiquitin-protein ligase that promotes ubiquitination of DIO2, leading to its degradation. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates. May cooperate with UBE2G1.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|O60337\|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1 SV=2	Back alignment and function description

>sp\|Q5R9W1\|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2 SV=1	Back alignment and function description

>sp\|O60103\|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=doa10 PE=1 SV=1	Back alignment and function description

>sp\|P40318\|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1 SV=1	Back alignment and function description

>sp\|Q8TCQ1\|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1 SV=1	Back alignment and function description

>sp\|Q6NZQ8\|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1 SV=2	Back alignment and function description

>sp\|Q9DBD2\|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2 SV=1	Back alignment and function description

>sp\|Q0VD59\|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2 SV=1	Back alignment and function description

>sp\|Q5T0T0\|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		925
356499761		1123	PREDICTED: E3 ubiquitin-protein ligase M	0.905	0.746	0.839	0.0
356519725		1124	PREDICTED: E3 ubiquitin-protein ligase M	0.903	0.743	0.835	0.0
224103627		1110	predicted protein [Populus trichocarpa]	0.957	0.798	0.833	0.0
359475354		1195	PREDICTED: E3 ubiquitin-protein ligase M	0.914	0.707	0.841	0.0
297741251		1110	unnamed protein product [Vitis vinifera]	0.914	0.762	0.841	0.0
449438383		1098	PREDICTED: E3 ubiquitin-protein ligase M	0.96	0.808	0.788	0.0
357475275		1112	E3 ubiquitin-protein ligase MARCH6 [Medi	0.956	0.795	0.775	0.0
297802584		1108	protein binding protein [Arabidopsis lyr	0.927	0.774	0.780	0.0
186516113		1107	RING/U-box domain-containing protein [Ar	0.926	0.774	0.779	0.0
224056124		1054	predicted protein [Populus trichocarpa]	0.890	0.781	0.835	0.0

>gi\|356499761\|ref\|XP_003518705.1\| PREDICTED: E3 ubiquitin-protein ligase MARCH6-like [Glycine max]	Back alignment and taxonomy information

 Score = 1453 bits (3762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/849 (83%), Positives = 769/849 (90%), Gaps = 11/849 (1%)

Query: 71  VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAE 130
           VCRICRNPGD ENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAE
Sbjct: 77  VCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAE 136

Query: 131 NAPARLPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQ 190
           NAPARLPFQEF+VGMAMKA HVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRS GEAQ
Sbjct: 137 NAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQ 196

Query: 191 RLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDAEREDEGDRN 250
           RLFLSH+ST VILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDA+REDE DRN
Sbjct: 197 RLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRN 256

Query: 251 VARAARRPPGQANRNFA-GEGNAEDAGGAPGIAGAGQMIRRNAENVAARWEMQAARLEAH 309
            AR ARRPPGQANRN   G+GN EDAGG  GIAGAGQ+IRRNAENVAARWEMQAARLEAH
Sbjct: 257 GARIARRPPGQANRNINNGDGNGEDAGGVQGIAGAGQVIRRNAENVAARWEMQAARLEAH 316

Query: 310 VEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRI 369
           VEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIF+PFSLGRI
Sbjct: 317 VEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRI 376

Query: 370 ILYHVSWLLSSASGPVLSSVMPLTETALSLANITLKNALSAVTNLTSEGQEGGLLGQVAD 429
           IL+++SW  S+ASGPVLS+V PL +T+LSLANITLKNAL+AV N++SE QE G +GQVA+
Sbjct: 377 ILHYLSWFFSTASGPVLSAVAPLADTSLSLANITLKNALTAVKNMSSETQENGSIGQVAE 436

Query: 430 VLKGNASEITEAANSTSASLSADLLKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVA 489
           +LK NASE++E +N TSAS  A +LK  ++GTSR+SDVTTLAIGY+FI +L+F Y GIVA
Sbjct: 437 MLKANASEMSEMSNITSAS--AVILKGVSIGTSRISDVTTLAIGYVFILTLIFCYFGIVA 494

Query: 490 LIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMC 549
           LIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTM+KVAFLLVIELGVFPLMC
Sbjct: 495 LIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMC 554

Query: 550 GWWLDVCTIRMFGKSMSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGV 609
           GWWLDVCTI+MFGK+M  RVQFFS SPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGV
Sbjct: 555 GWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGV 614

Query: 610 LYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIF 669
           LYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVK AMRMA SIF
Sbjct: 615 LYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKHAMRMAPSIF 674

Query: 670 PLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLP 729
           PLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLP
Sbjct: 675 PLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLP 734

Query: 730 RPEDNGGQENGNIDIRRDRNIEIRRDGLQVIPLGPDRALIGMPAVDDINRGALVSGNSNV 789
           +P+++  QENGN +  R   ++I + G+       D+ L+   A DD+NR  +     N 
Sbjct: 735 KPDESVNQENGNGEPARQERLQIVQAGVH------DQGLVPF-AGDDLNRAIITVEEMNA 787

Query: 790 SEEYDGDEQSDSDRYGFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPIT 849
            E+YD DEQSDSD Y FVLRIVLLLVIAWMTLLV NSALIVVPISLGR LFN+IP LPIT
Sbjct: 788 EEDYDNDEQSDSD-YAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRTLFNSIPRLPIT 846

Query: 850 HGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSSALLSI 909
           HG+KCNDLYAFIIGSYVIWTAVAG RYSIE +R +R+++LF QIWKWCGI+VKSSALLSI
Sbjct: 847 HGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQIRKRRSSVLFGQIWKWCGILVKSSALLSI 906

Query: 910 WVRVILVII 918
           W+ VI V+I
Sbjct: 907 WIFVIPVLI 915

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356519725\|ref\|XP_003528520.1\| PREDICTED: E3 ubiquitin-protein ligase MARCH6-like [Glycine max]	Back alignment and taxonomy information

>gi\|224103627\|ref\|XP_002313128.1\| predicted protein [Populus trichocarpa] gi\|222849536\|gb\|EEE87083.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359475354\|ref\|XP_002282447.2\| PREDICTED: E3 ubiquitin-protein ligase MARCH6 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297741251\|emb\|CBI32382.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449438383\|ref\|XP_004136968.1\| PREDICTED: E3 ubiquitin-protein ligase MARCH6-like [Cucumis sativus] gi\|449495626\|ref\|XP_004159898.1\| PREDICTED: E3 ubiquitin-protein ligase MARCH6-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357475275\|ref\|XP_003607923.1\| E3 ubiquitin-protein ligase MARCH6 [Medicago truncatula] gi\|355508978\|gb\|AES90120.1\| E3 ubiquitin-protein ligase MARCH6 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297802584\|ref\|XP_002869176.1\| protein binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297315012\|gb\|EFH45435.1\| protein binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|186516113\|ref\|NP_001119113.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] gi\|332660924\|gb\|AEE86324.1\| RING/U-box domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224056124\|ref\|XP_002298731.1\| predicted protein [Populus trichocarpa] gi\|222845989\|gb\|EEE83536.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		925
TAIR\|locus:2124251		1108	CER9 "AT4G34100" [Arabidopsis	0.937	0.782	0.753	0.0
UNIPROTKB\|F1MHF0		910	MARCH6 "Uncharacterized protei	0.220	0.224	0.388	2.5e-83
UNIPROTKB\|F1S0T7		904	MARCH6 "Uncharacterized protei	0.220	0.225	0.388	2.3e-82
UNIPROTKB\|F1PED2		912	MARCH6 "Uncharacterized protei	0.220	0.223	0.388	5.3e-82
UNIPROTKB\|O60337		910	MARCH6 "E3 ubiquitin-protein l	0.220	0.224	0.388	1.8e-81
UNIPROTKB\|Q5R9W1		910	MARCH6 "E3 ubiquitin-protein l	0.220	0.224	0.378	4.9e-80
WB\|WBGene00018847		1025	marc-6 [Caenorhabditis elegans	0.291	0.263	0.345	9.3e-72
UNIPROTKB\|B4DT33		862	MARCH6 "E3 ubiquitin-protein l	0.220	0.236	0.388	5.8e-71
FB\|FBgn0035333		988	CG1317 [Drosophila melanogaste	0.215	0.201	0.386	9.8e-69
DICTYBASE\|DDB_G0285705		1088	DDB_G0285705 "RING zinc finger	0.284	0.241	0.291	9.9e-61

TAIR\|locus:2124251 CER9 "AT4G34100" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3394 (1199.8 bits), Expect = 0., P = 0.
 Identities = 663/880 (75%), Positives = 740/880 (84%)

Query:    27 EPSLSTPSMKRGAEE-SASMGAEDDREKTSSTGFDIXXXXXXXXXVCRICRNPGDPENPL 85
             EPS+S+ S      + S +  +  D   +++TG            VCRICRNPGD +NPL
Sbjct:    22 EPSVSSSSSSSSPNQASPNPFSNMDPAVSTATGSRYVDDDEDEEDVCRICRNPGDADNPL 81

Query:    86 RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGM 145
             RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKH FSFSPVYA+NAP+RLPFQEF+VG+
Sbjct:    82 RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYADNAPSRLPFQEFVVGI 141

Query:   146 AMKAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTD 205
             AMKA HVLQFFLRLSFVLSVWLL IPFITFWIWRLAFVR+FGEAQRLFLSHISTTVILTD
Sbjct:   142 AMKACHVLQFFLRLSFVLSVWLLTIPFITFWIWRLAFVRTFGEAQRLFLSHISTTVILTD 201

Query:   206 CLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDAEREDEGDRNVARAARRPPGQANRN 265
             CLHGFLLSASIVFIFLGATSLRDYFRHLRE+GGQ+ ER+D+ DRN ARAARRP GQANRN
Sbjct:   202 CLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQE-ERDDDVDRNGARAARRPAGQANRN 260

Query:   266 FXXXXXXXXXXXXXXXXXXXQMIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAED 325
                                 Q+ RRN ENV AR ++QAARLEA VEQMFDGLDDADGAED
Sbjct:   261 LAGEGNGEDAGDQGAAVG--QIARRNPENVLARLDIQAARLEAQVEQMFDGLDDADGAED 318

Query:   326 VPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILYHVSWLLSSASGPV 385
             VPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIF+PF+LGRIILYHVSWL ++A GP 
Sbjct:   319 VPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFTLGRIILYHVSWLFAAARGPA 378

Query:   386 LSSVMPLTETALSLANITLKNALSAVTNLTSEGQEGGLLGQVADVLKGNASEITEAANST 445
             +++ + LT+T LSL NITLK+AL+AV+NLTSEGQ  GLLGQ+ +++K N SE+   AN+T
Sbjct:   379 VAASLHLTDTGLSLENITLKSALTAVSNLTSEGQGNGLLGQLTEMMKVNGSELN-GANNT 437

Query:   446 SASLSADLLKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFY 505
               S++ DLLK +T+G S+LSD+TTLA+GYMFI  LVF YLGI+ALIRY KGEPLT+GRFY
Sbjct:   438 -LSVATDLLKGSTVGASKLSDITTLAVGYMFIVFLVFLYLGIIALIRYAKGEPLTVGRFY 496

Query:   506 GIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSM 565
             GIASI E +PSL RQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCT+RMFGK+M
Sbjct:   497 GIASIVEAVPSLLRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTVRMFGKTM 556

Query:   566 SERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFR 625
             S RVQF S+SPLASSLVHWVVGI+YMLQISIFVSLLRGVLR GVLYFLRDPADPNYNPFR
Sbjct:   557 SHRVQFLSISPLASSLVHWVVGIMYMLQISIFVSLLRGVLRPGVLYFLRDPADPNYNPFR 616

Query:   626 DLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPAD 685
             DLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLA+RMA SIFPLDISVSDPFTEIPAD
Sbjct:   617 DLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAIRMAPSIFPLDISVSDPFTEIPAD 676

Query:   686 MLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPEDNGGQXXXXXXXX 745
             MLLFQICIPF IEHF+LRTTIKSLLR WFT VGWALGLTDFLLPRPEDN GQ        
Sbjct:   677 MLLFQICIPFIIEHFRLRTTIKSLLRCWFTGVGWALGLTDFLLPRPEDNIGQDNGNGEPG 736

Query:   746 XXXXXXXXXXXLQVIPLGPDRALIGMPAVDDINRGALVSGNSNVSEEY-DGDEQSDSDRY 804
                        LQV   GPDRA+  +P  DD NR  L +GN N  EEY D DEQSDSDRY
Sbjct:   737 RQNRAQV----LQVG--GPDRAMAALPVADDPNRSRLRAGNVNTGEEYEDDDEQSDSDRY 790

Query:   805 GFVLRIVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGS 864
              FV+RI+LLL++AW+TLL+ NSALIVVP+SLGRALF+AIP+LPITHG+KCNDLYAF+IG+
Sbjct:   791 NFVVRIILLLLVAWVTLLLFNSALIVVPVSLGRALFSAIPILPITHGIKCNDLYAFVIGT 850

Query:   865 YVIWTAVAGARYSIEHVRTKRAAILFKQIWKWCGIVVKSS 904
             Y  WT ++GARY+IEHV++KR ++L  QIWKWCGIV KSS
Sbjct:   851 YAFWTTISGARYAIEHVKSKRTSVLLNQIWKWCGIVFKSS 890

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0010345 "suberin biosynthetic process" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0008299 "isoprenoid biosynthetic process" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IGI

GO:1900490 "positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity" evidence=IMP

UNIPROTKB\|F1MHF0 MARCH6 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S0T7 MARCH6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PED2 MARCH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O60337 MARCH6 "E3 ubiquitin-protein ligase MARCH6" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R9W1 MARCH6 "E3 ubiquitin-protein ligase MARCH6" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

WB\|WBGene00018847 marc-6 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|B4DT33 MARCH6 "E3 ubiquitin-protein ligase MARCH6" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

FB\|FBgn0035333 CG1317 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0285705 DDB_G0285705 "RING zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00090669	hypothetical protein (1110 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.2248.1	annotation not avaliable (92 aa)	•	0.800
	gw1.VIII.1470.1	hypothetical protein (164 aa)	•	0.800
	grail3.0049019201	SubName- Full=Putative uncharacterized protein; (168 aa)	•	0.800
	grail3.0022026302	RecName- Full=Ubiquitin carrier protein; EC=6.3.2.-; (167 aa)	•	0.800
	eugene3.00290005	hypothetical protein (235 aa)	•	0.800
	estExt_fgenesh4_pm.C_LG_VIII0439	hypothetical protein (311 aa)	•	0.800
	estExt_fgenesh4_pg.C_LG_X1296	hypothetical protein (308 aa)	•	0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		925
smart00744		49	smart00744, RINGv, The RING-variant domain is a C4	3e-25
COG5183		1175	COG5183, SSM4, Protein involved in mRNA turnover a	2e-23
COG5183		1175	COG5183, SSM4, Protein involved in mRNA turnover a	2e-23
pfam12906		47	pfam12906, RINGv, RING-variant domain	7e-23
PHA02862		156	PHA02862, PHA02862, 5L protein; Provisional	2e-06
PHA02825		162	PHA02825, PHA02825, LAP/PHD finger-like protein; P	8e-06
smart00184		40	smart00184, RING, Ring finger	0.002
pfam13639		46	pfam13639, zf-RING_2, Ring finger domain	0.004

>gnl\|CDD\|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins	Back alignment and domain information

 Score = 98.5 bits (246), Expect = 3e-25
 Identities = 26/49 (53%), Positives = 36/49 (73%)

Query: 71  VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 119
           +CRIC + GD  +PL  PC C GS+K+VHQ+CL +W+N S  + CE+CK
Sbjct: 1   ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C. Length = 49

>gnl\|CDD\|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|221845 pfam12906, RINGv, RING-variant domain	Back alignment and domain information

>gnl\|CDD\|165197 PHA02862, PHA02862, 5L protein; Provisional	Back alignment and domain information

>gnl\|CDD\|177491 PHA02825, PHA02825, LAP/PHD finger-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|214546 smart00184, RING, Ring finger	Back alignment and domain information

>gnl\|CDD\|222279 pfam13639, zf-RING_2, Ring finger domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		925
COG5183		1175	SSM4 Protein involved in mRNA turnover and stabili	100.0
PHA02862		156	5L protein; Provisional	99.68
PHA02825		162	LAP/PHD finger-like protein; Provisional	99.6
smart00744		49	RINGv The RING-variant domain is a C4HC3 zinc-fing	99.55
PF12906		47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	99.47
KOG3053		293	consensus Uncharacterized conserved protein [Funct	99.37
KOG1609		323	consensus Protein involved in mRNA turnover and st	99.03
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.69
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.61
KOG1493		84	consensus Anaphase-promoting complex (APC), subuni	97.42
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.41
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.09
PHA02929		238	N1R/p28-like protein; Provisional	97.04
PF12678		73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.03
PF11793		70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	96.98
COG5219		1525	Uncharacterized conserved protein, contains RING Z	96.91
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	96.81
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	96.24
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	96.21
PHA02926		242	zinc finger-like protein; Provisional	96.0
COG5194		88	APC11 Component of SCF ubiquitin ligase and anapha	95.87
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	95.72
KOG0802		543	consensus E3 ubiquitin ligase [Posttranslational m	95.63
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	95.59
KOG0828		636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.37
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	94.77
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	94.08
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	93.52
KOG0827		465	consensus Predicted E3 ubiquitin ligase [Posttrans	93.36
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	92.76
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.12
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	91.47
KOG0825		1134	consensus PHD Zn-finger protein [General function	91.43
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	91.08
KOG4265		349	consensus Predicted E3 ubiquitin ligase [Posttrans	90.07
KOG1734		328	consensus Predicted RING-containing E3 ubiquitin l	89.83
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	89.56
PF14634		44	zf-RING_5: zinc-RING finger domain	88.7
COG5236		493	Uncharacterized conserved protein, contains RING Z	88.27
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	86.29
COG5175		480	MOT2 Transcriptional repressor [Transcription]	85.07
KOG0320		187	consensus Predicted E3 ubiquitin ligase [Posttrans	83.17
KOG3268		234	consensus Predicted E3 ubiquitin ligase [Posttrans	81.09
KOG2930		114	consensus SCF ubiquitin ligase, Rbx1 component [Po	80.54

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=2.7e-72  Score=639.18  Aligned_cols=384  Identities=20%  Similarity=0.226  Sum_probs=280.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhhhhhhcccc-hHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 002420          521 FLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKS-MSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVS  599 (925)
Q Consensus       521 ~~~~l~~~~~~~KV~~i~~iEl~vFPl~cG~~LD~c~lplf~~t-~~~r~~~~~~~p~~s~f~hW~vGt~yM~~fA~fv~  599 (925)
                      .++.+++..+..|+.+++.||+.+||+.||.+||+|..--+.++ -..-.....-+|..|+|+.|.+|++||++||.|++
T Consensus       588 ~f~~l~~~~c~~K~~i~f~ieL~~fpi~~g~~l~~cl~~~~~~s~~~~L~~V~~~~p~~s~fi~w~Ig~~fm~~fa~yi~  667 (1175)
T COG5183         588 IFDKLMLMWCANKNKIFFRIELKAFPIRRGTELEICLYFNTHPSSDFALFYVPKLFPLRSSFIIWSIGLCFMGLFAGYIV  667 (1175)
T ss_pred             HHHHHHHHhhhhhccEEEEEEeeeccccchhhhhHHHhcccCccchhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999987333322 22223456779999999999999999999999999


Q ss_pred             HHHh-hccCceEeeecCCCCCCCchhHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeecCCC
Q 002420          600 LLRG-VLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDP  678 (925)
Q Consensus       600 ~~R~-IlRpGVL~FiRdp~DP~f~pi~d~l~~p~~~qlrri~~S~~vy~~~iv~~v~~pv~~~~~~~p~~lPl~~~~~~P  678 (925)
                      |.|+ |.|||||+|||||+|||+||+||+|++|+..||+|+.+|++.|+++|+.|++.-.- .+..+.-.+|..+....-
T Consensus       668 m~Rk~i~Rpgvl~fiRdp~DPn~~~l~dvL~~pml~qL~rl~~s~i~ya~fiI~g~gs~~~-mLkS~g~~~p~~~~~~~i  746 (1175)
T COG5183         668 MARKIIERPGVLAFIRDPGDPNIKILHDVLLYPMLAQLFRLSWSVIHYAMFIIRGEGSFPF-MLKSAGELCPHGIVNVYI  746 (1175)
T ss_pred             HHHHhhcccceEEEEcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH-HHHhccccccccceeeee
Confidence            9999 99999999999999999999999999999999999999999999999999975222 223344456665544333


Q ss_pred             CcccchhHHHHHHHHHHHHhhcchhHHHHHHHHHH---HHHhhhhccCccccCC--CCCCCCCCC---------------
Q 002420          679 FTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYW---FTAVGWALGLTDFLLP--RPEDNGGQE---------------  738 (925)
Q Consensus       679 ~~e~p~dLL~~~~~~p~~l~~~~~~~~~k~~~~~W---~~~~~~~L~Ls~fllg--~~~e~g~~~---------------  738 (925)
                      ..+-|.|||.+...+-...+.+||-.     .+||   ++.++|.||||||+.|  -++|||.-.               
T Consensus       747 ~Fntv~~ll~~~~~I~lS~~~~kple-----~ryWkT~~~lf~r~lrlSS~V~g~~~s~eegyy~n~f~~~ir~l~tKPk  821 (1175)
T COG5183         747 NFNTVYPLLGSLMVIVLSNDGTKPLE-----MRYWKTPLRLFLRFLRLSSIVEGILSSSEEGYYRNLFRALIRELFTKPK  821 (1175)
T ss_pred             ecccHHHHHHHHHHhhhccCCccHHH-----HHHHHhHHHHHHHHHhhhHhhcccccCCcccccHHHHHHHHHHHhcCCc
Confidence            34567788887766655555555433     2477   4569999999999999  466777321               


Q ss_pred             ---CCcccccccchhhhccCCcccccCCCCcc------cccCccccccccccccCCCCCCCCCCCCCCCCCCCCcchHHH
Q 002420          739 ---NGNIDIRRDRNIEIRRDGLQVIPLGPDRA------LIGMPAVDDINRGALVSGNSNVSEEYDGDEQSDSDRYGFVLR  809 (925)
Q Consensus       739 ---~~~~~~~~~~~~~~~~dg~~~~~p~~d~~------~~~~~~~~d~~~~~~a~~~~~~~e~~~~~~~~~~~~~~F~~R  809 (925)
                         +++.-.++++...+++||-+-+.|..|-+      |....++++   ...-.+++.+.|+ +++.....-|.+|+.|
T Consensus       822 ~~Eqae~G~k~~a~~~fV~dg~~m~~ps~d~v~~~~g~m~Vpvt~~g---yeif~ekkk~~Eq-n~~y~i~YvP~~FykR  897 (1175)
T COG5183         822 TLEQAELGCKINAFISFVFDGWYMYNPSTDLVGLSNGEMAVPVTVVG---YEIFVEKKKGDEQ-NDIYSIKYVPPGFYKR  897 (1175)
T ss_pred             chhhhhhhhhhhhheeeecceEEEEcchhhhcccccceEEEEEEecc---hhhhhhhcccccc-ccceEEEecCccHHHH
Confidence               11111133344568899999999987743      333333322   2112333332221 1111112235689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCccCCCCccchHHHHHHHHHHHHHHHhhhHhhh-----hhccch
Q 002420          810 IVLLLVIAWMTLLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSI-----EHVRTK  884 (925)
Q Consensus       810 i~~ll~l~wl~~~~~~~~~~~vPl~iGR~l~~~~~~~~~~~~~~~~DlYa~~iG~yv~w~~~~~~~~~~-----~~~~~~  884 (925)
                      +..++.++|..++..-..++++|..+||.+.+.. .+|    +.-||+||+.+|.|++=..-....-++     ++.|.-
T Consensus       898 ll~ll~lvw~~~~~i~~~vtFi~~aL~~~v~s~~-F~~----VVK~~~YsY~~~yY~l~F~~~~~HA~Ve~ve~D~~Rdi  972 (1175)
T COG5183         898 LLDLLYLVWRRVVNIDEEVTFISQALINFVCSFG-FLP----VVKLLLYSYLNIYYVLHFTTLDEHAVVEEVEHDIERDI  972 (1175)
T ss_pred             HHHHHHHHHHHHHHhhhhheehHHHHHHHHHHhc-ccH----HHHHHHHHHHhhheEEeechhHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998864 222    456899999999999744322222111     223444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002420          885 RAAILFKQIWKWCGIVVKSSALLSIWVRVILVIIL  919 (925)
Q Consensus       885 r~~~~~~~i~~w~~~~~K~~~~~~i~~~viPlL~g  919 (925)
                      -.++..+-++.-..+++|+.++.++-+.+.|++.|
T Consensus       973 ~N~iN~~I~M~~~~M~vKY~LmvFi~I~I~~i~~~ 1007 (1175)
T COG5183         973 NNAINQGIFMAIFSMLVKYNLMVFIAIMIAVIRTM 1007 (1175)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455444556678999999999988889999888

>PHA02862 5L protein; Provisional	Back alignment and domain information

>PHA02825 LAP/PHD finger-like protein; Provisional	Back alignment and domain information

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins	Back alignment and domain information

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A	Back alignment and domain information

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A	Back alignment and domain information

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5175 MOT2 Transcriptional repressor [Transcription]	Back alignment and domain information

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		925
2d8s_A		80	Solution Structure Of The Ring Domain Of The Human		6e-14

>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human Cellular Modulator Of Immune Recognition Protein Length = 80

Back alignment and structure

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 71  VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAF 122
           +CRIC   GD E+PL  PC C+GS+ FVHQ CL QW+  S+ R CE+CK+ F
Sbjct: 17  ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68

PyMOL of 2d8s

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		925
2d8s_A		80	Cellular modulator of immune recognition; C-MIR, m	3e-31
1vyx_A		60	ORF K3, K3RING; zinc-binding protein, ring domain,	5e-28
2ct0_A		74	Non-SMC element 1 homolog; ring domain, structural	1e-06
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	2e-06
2l43_A		88	N-teminal domain from histone H3.3, linker, PHD1 f	1e-05
1v87_A		114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-05
1z6u_A		150	NP95-like ring finger protein isoform B; structura	1e-05
3hcs_A		170	TNF receptor-associated factor 6; cross-brace, bet	5e-05
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	6e-05
2ep4_A		74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-04
2ku3_A		71	Bromodomain-containing protein 1; PHD finger, chro	3e-04
2ecn_A		70	Ring finger protein 141; RNF141, ring domain, zinc	3e-04
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	6e-04
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	8e-04

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80	Back alignment and structure

 Score =  116 bits (291), Expect = 3e-31
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 56  STGFDIEEEEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQC 115
           S+G          +++CRIC   GD E+PL  PC C+GS+ FVHQ CL QW+  S+ R C
Sbjct: 2   SSGSSGTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 61

Query: 116 EVCKHAFSF-SPVYAENA 132
           E+CK+ F   + +   ++
Sbjct: 62  ELCKYEFIMETKLSGPSS 79

PyMOL of 2d8s

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60	Back alignment and structure

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78	Back alignment and structure

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88	Back alignment and structure

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114	Back alignment and structure

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150	Back alignment and structure

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81	Back alignment and structure

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74	Back alignment and structure

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71	Back alignment and structure

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		925
1vyx_A		60	ORF K3, K3RING; zinc-binding protein, ring domain,	99.67
2d8s_A		80	Cellular modulator of immune recognition; C-MIR, m	99.6
2ep4_A		74	Ring finger protein 24; zinc binding, ubiquitin, E	98.02
2ct0_A		74	Non-SMC element 1 homolog; ring domain, structural	97.96
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.95
2ect_A		78	Ring finger protein 126; metal binding protein, st	97.92
2ct2_A		88	Tripartite motif protein 32; zinc-finger protein H	97.82
2ecl_A		81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.81
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.76
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	97.76
2l0b_A		91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.7
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	97.66
3dpl_R		106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.65
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	97.62
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	97.6
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	97.59
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	97.58
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	97.56
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	97.54
1v87_A		114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.53
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	97.43
2ecn_A		70	Ring finger protein 141; RNF141, ring domain, zinc	97.39
3k1l_B		381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.37
4a0k_B		117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.35
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	97.34
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	97.33
3ztg_A		92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	97.27
2ysj_A		63	Tripartite motif-containing protein 31; ring-type	97.26
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	97.22
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	97.18
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	97.18
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	97.06
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	96.98
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	96.91
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	96.7
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	96.67
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	96.67
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	96.57
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.37
1z6u_A		150	NP95-like ring finger protein isoform B; structura	96.35
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	96.34
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	96.14
2y1n_A		389	E3 ubiquitin-protein ligase; ligase-transferase co	96.14
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	96.12
3hct_A		118	TNF receptor-associated factor 6; cross-brace, bet	96.04
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	95.87
1rmd_A		116	RAG1; V(D)J recombination, antibody, MAD, ring fin	95.79
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	95.56
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	95.44
1bor_A		56	Transcription factor PML; proto-oncogene, nuclear	95.2
2ea5_A		68	Cell growth regulator with ring finger domain prot	95.14
2vje_B		63	MDM4 protein; proto-oncogene, phosphorylation, alt	94.94
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	94.8
4ic3_A		74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	94.53
3nw0_A		238	Non-structural maintenance of chromosomes element	94.53
1wgm_A		98	Ubiquitin conjugation factor E4A; ubiquitinating e	94.05
2kr4_A		85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	94.02
2kre_A		100	Ubiquitin conjugation factor E4 B; U-box domain, E	94.01
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	93.58
1jm7_B		117	BARD1, BRCA1-associated ring domain protein 1; rin	93.55
3knv_A		141	TNF receptor-associated factor 2; cross-brace, alt	93.41
3hcs_A		170	TNF receptor-associated factor 6; cross-brace, bet	92.86
2ecg_A		75	Baculoviral IAP repeat-containing protein 4; BIRC4	92.69
2vje_A		64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	92.47
3htk_C		267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	91.51
2f42_A		179	STIP1 homology and U-box containing protein 1; cha	91.45
2yu4_A		94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	90.06
1wim_A		94	KIAA0161 protein; ring finger domain, UBCM4-intera	88.51
2lri_C		66	Autoimmune regulator; Zn binding protein domain, a	87.01
1wen_A		71	Inhibitor of growth family, member 4; ING1-like pr	86.31
3t6p_A		345	Baculoviral IAP repeat-containing protein 2; ring,	85.95
1wev_A		88	Riken cDNA 1110020M19; structural genomics, PHD do	84.72
1weu_A		91	Inhibitor of growth family, member 4; structural g	84.55
2l43_A		88	N-teminal domain from histone H3.3, linker, PHD1 f	83.05
2ku3_A		71	Bromodomain-containing protein 1; PHD finger, chro	83.02
2yho_A		79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	81.53
2k16_A		75	Transcription initiation factor TFIID subunit 3; p	81.18

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3	Back alignment and structure

Probab=99.67  E-value=1.7e-17  Score=139.73  Aligned_cols=59  Identities=32%  Similarity=0.763  Sum_probs=52.4

Q ss_pred             cccCCCcceEeCCCCCCCCCcccccCCCCCcceecHHHHHHHHHccCCCcccccccceeec
Q 002420           65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS  125 (925)
Q Consensus        65 ~~~~~~~CrIC~~~~~~~~~l~~PC~C~Gs~~~vH~~CL~~Wl~~s~~~~CelCk~~f~~~  125 (925)
                      |+++++.||||+++.  +++++.||+|+||+++||++||++|++++++.+||+||++|+++
T Consensus         2 e~~~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~r   60 (60)
T 1vyx_A            2 EDEDVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR   60 (60)
T ss_dssp             TTCSCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCCC
T ss_pred             CCCCCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeecC
Confidence            345778999999864  45789999999999999999999999999899999999999863

PyMOL of 1vyx

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}	Back alignment and structure

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}	Back alignment and structure

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A	Back alignment and structure

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A	Back alignment and structure

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}	Back alignment and structure

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2	Back alignment and structure

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}	Back alignment and structure

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2	Back alignment and structure

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}	Back alignment and structure

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}	Back alignment and structure

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A	Back alignment and structure

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}	Back alignment and structure

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C	Back alignment and structure

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}	Back alignment and structure

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A	Back alignment and structure

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B	Back alignment and structure

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2	Back alignment and structure

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2	Back alignment and structure

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}	Back alignment and structure

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}	Back alignment and structure

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A	Back alignment and structure

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		925
d1vyxa_		60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	6e-14
d1fbva4		79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	6e-07
d1iyma_		55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	9e-06
d1g25a_		65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-05
d1bora_		56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-05
d1ur6b_		52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-05
d3dplr1		88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	3e-05
d1mm2a_		61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	2e-04
d1weva_		88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	3e-04
d1wesa_		71	g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I	3e-04
d1v87a_		114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	8e-04
d1jm7b_		97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	0.003
d1chca_		68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.003
d1f62a_		51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	0.004
d1wewa_		78	g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c	0.004

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 65.3 bits (158), Expect = 6e-14
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 65  EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124
           E+E+  VC IC    +  N     C C+G ++ VH+ CL  WL  S    C++C   ++ 
Sbjct: 2   EDEDVPVCWICNE--ELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59

PyMOL of d1vyxa_

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88	Back information, alignment and structure

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61	Back information, alignment and structure

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88	Back information, alignment and structure

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68	Back information, alignment and structure

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51	Back information, alignment and structure

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		925
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.42
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	98.07
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.03
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.76
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.72
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.61
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	97.58
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	96.56
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	96.51
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	96.49
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	96.44
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	94.77
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	93.5
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	93.22
d1wesa_		71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	91.82
d1wgma_		98	Ubiquitin conjugation factor E4A {Human (Homo sapi	91.08
d1wima_		94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	90.92
d1wewa_		78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	89.44
d1wema_		76	Death associated transcription factor 1, Datf1 (DI	84.88
d1weva_		88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	82.65
d1we9a_		64	PHD finger protein At5g26210 {Thale cress (Arabido	82.05

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.42  E-value=2.5e-14  Score=118.09  Aligned_cols=59  Identities=32%  Similarity=0.763  Sum_probs=51.9

Q ss_pred             cccCCCcceEeCCCCCCCCCcccccCCCCCcceecHHHHHHHHHccCCCcccccccceeec
Q 002420           65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS  125 (925)
Q Consensus        65 ~~~~~~~CrIC~~~~~~~~~l~~PC~C~Gs~~~vH~~CL~~Wl~~s~~~~CelCk~~f~~~  125 (925)
                      ++++.++|+||+++.  +++++.||.|+|+.|++|+.||.+|++++++.+||+|+++|+++
T Consensus         2 eded~~~C~IC~~~~--~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~k   60 (60)
T d1vyxa_           2 EDEDVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR   60 (60)
T ss_dssp             TTCSCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCCC
T ss_pred             CCCCCCCCccCCccC--CCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeecC
Confidence            345778999999754  35688999999999999999999999999999999999999863

PyMOL of d1vyxa_

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure