Citrus Sinensis ID: 002443
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 921 | 2.2.26 [Sep-21-2011] | |||||||
| O82039 | 932 | Probable UDP-N-acetylgluc | N/A | no | 0.994 | 0.982 | 0.838 | 0.0 | |
| Q96301 | 914 | Probable UDP-N-acetylgluc | yes | no | 0.965 | 0.972 | 0.837 | 0.0 | |
| Q8RVB2 | 931 | Probable UDP-N-acetylgluc | N/A | no | 0.996 | 0.986 | 0.822 | 0.0 | |
| Q8LP10 | 918 | Probable UDP-N-acetylgluc | N/A | no | 0.946 | 0.949 | 0.796 | 0.0 | |
| O82422 | 944 | Probable UDP-N-acetylgluc | N/A | no | 0.891 | 0.869 | 0.840 | 0.0 | |
| Q6YZI0 | 927 | Probable UDP-N-acetylgluc | yes | no | 0.921 | 0.915 | 0.806 | 0.0 | |
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | no | no | 0.800 | 0.754 | 0.285 | 2e-82 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.615 | 0.542 | 0.261 | 1e-55 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.615 | 0.542 | 0.261 | 1e-55 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | yes | no | 0.615 | 0.547 | 0.261 | 1e-55 |
| >sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1634 bits (4232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/927 (83%), Positives = 840/927 (90%), Gaps = 11/927 (1%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E D + +NGFLKG QS + GSPV + K FEGKDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61 RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG RFMRLY QY SWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKLYEAHRDWGWRFMRLYQQYNSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
+KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY NYKVV+YSAVVKADAKT RFR+KV
Sbjct: 481 SKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKADAKTNRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
NTTGLPTIDYRITDS+ADPP TKQKHVEEL+RLP+ FLCYTPSPEAGPV P PALTNGF+
Sbjct: 601 NTTGLPTIDYRITDSMADPPSTKQKHVEELVRLPDSFLCYTPSPEAGPVSPAPALTNGFV 660
Query: 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 720
TFGSFNNLAKITPKVLQVWARILCAVP+SRL+VKCKPF CDSVR RFLS LEQLGLE R
Sbjct: 661 TFGSFNNLAKITPKVLQVWARILCAVPHSRLIVKCKPFGCDSVRQRFLSILEQLGLEPQR 720
Query: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780
VDL+PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTM GSVHAHNVGVS
Sbjct: 721 VDLVPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMGGSVHAHNVGVS 780
Query: 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 840
LL VGL+ L+A+NEDEYV+LA+QLASDVT+L+NLRMSLR+LM+KSP+CDG F LES
Sbjct: 781 LLKTVGLRKLVARNEDEYVELAIQLASDVTSLSNLRMSLRELMAKSPLCDGAQFTQNLES 840
Query: 841 TYRNMWHRYCKGDVPSLKRME-------MLQQQVVSEE-PSKFSEPTKIIFAKEGSPGSV 892
TYR+MW RYC GDVPSL+RME L + VV EE P E T+I +K+ G +
Sbjct: 841 TYRSMWRRYCDGDVPSLRRMELLQQQQQTLAELVVPEESPVSPIEKTRISASKD---GPI 897
Query: 893 MPNGFNQASPSMLNLSNIEENGVQLNQ 919
NGF + + N S IEENGVQLNQ
Sbjct: 898 KENGFTVSPALVYNSSTIEENGVQLNQ 924
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Petunia hybrida (taxid: 4102) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1573 bits (4072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 752/898 (83%), Positives = 816/898 (90%), Gaps = 9/898 (1%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M +E D RER PV +NGF G +S ++G + + K +G D LSYANILR+
Sbjct: 1 MVGLEDDTE--RERSPVVENGFSNGSRSSSSSAG---VLSPSRKVTQGNDTLSYANILRA 55
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE +LEKDS NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA T
Sbjct: 56 RNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALT 115
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGIL+K+EGRLVEAAESY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 116 HCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 175
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGD
Sbjct: 176 YEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGD 235
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LE AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD+ QGVAYYKKALYYNWHYA
Sbjct: 236 LEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNWHYA 295
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECYQMA
Sbjct: 296 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECYQMA 355
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNF+QSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEA+NNLGVLYRDAG+I++
Sbjct: 356 LSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITM 415
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AIDAYE+CLKIDPDSRNAGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTSWDN
Sbjct: 416 AIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDN 475
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERP+ IGY+SPD+FTHSVSYFIEAPL +HDY YKVVVYSAVVKADAKT RFR+KV
Sbjct: 476 LKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKV 535
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+W+DIYGIDEKK+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQVTWIGYP
Sbjct: 536 LKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYP 595
Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
NTTGLPT+DYRITDSLADPP+TKQK VEEL+RLP+CFLCYTPSPEAGPVCPTPAL+NGF+
Sbjct: 596 NTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGFV 655
Query: 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 720
TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS+R RFL+TLEQLGLES R
Sbjct: 656 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLESKR 715
Query: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780
VDLLPLIL NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS
Sbjct: 716 VDLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 775
Query: 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 840
LLTKVGL HL+AKNEDEYVQL++ LASDVTAL+ LRMSLRDLM+ SPVC+G +FA+GLES
Sbjct: 776 LLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVGLES 835
Query: 841 TYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEP--SKFSEPTKIIFAKEGSPGSVMPNG 896
YRNMW +YCKG+VPSL+RMEMLQ++ V ++P SK P+++ E +P S+ NG
Sbjct: 836 AYRNMWKKYCKGEVPSLRRMEMLQKE-VHDDPLISKDLGPSRVSVTGEATP-SLKANG 891
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1560 bits (4039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/926 (82%), Positives = 827/926 (89%), Gaps = 8/926 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E + + +NGFLKG QS G+ GSP + K FE KDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESESLGNNGFLKGGQSSSGSKGSPGRISHVKKIFEDKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VLEKDS ++E+ IGKGICLQMQN GRLAF+SFSEA+K+DPQNACA T
Sbjct: 61 RNKFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSY PAAECLAIVLTD+GTSLKLAGNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL YNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALCYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+A
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG+RFM+LY QYTSWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGTDDKLYEAHRDWGRRFMKLYPQYTSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
+K PERPLVIGYVSPDYFTHSVSYFIEAPL +HDY NYKVVVYS+VVKADAKT RFR+KV
Sbjct: 481 SKVPERPLVIGYVSPDYFTHSVSYFIEAPLAHHDYTNYKVVVYSSVVKADAKTNRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
MKKGG+WRDIYGIDEKKV++M+REDK+DI+VELTGHTANNKLG MAC+PAPVQVTWIGYP
Sbjct: 541 MKKGGLWRDIYGIDEKKVSSMIREDKVDIMVELTGHTANNKLGTMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
NTTGLPTIDYRITD++ADPP KQKHVEEL+RLP FLCYTPSPEAGPVCP PAL+NGF+
Sbjct: 601 NTTGLPTIDYRITDAMADPPNAKQKHVEELVRLPNSFLCYTPSPEAGPVCPAPALSNGFV 660
Query: 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 720
TFGSFNNLAKITPKVL+VWARIL AVP+SRL+VKCKPFCCDSVR RFLS LEQLGLE R
Sbjct: 661 TFGSFNNLAKITPKVLKVWARILSAVPHSRLIVKCKPFCCDSVRQRFLSILEQLGLEPQR 720
Query: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780
VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTM GSVHAHNVGVS
Sbjct: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMGGSVHAHNVGVS 780
Query: 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 840
LL VGL++L+A+NEDEYV+ A+QLASDVT+L+NLRMSLR+LMSKSP+CDG F +ES
Sbjct: 781 LLKTVGLENLVARNEDEYVESAIQLASDVTSLSNLRMSLRELMSKSPLCDGAKFTRNIES 840
Query: 841 TYRNMWHRYCKGDVPSLKRM------EMLQQQVVSEEPSKFSEPTKIIFAKEGSPGSVMP 894
YR+MW RYC GDVPSL+RM + + VV EE S P++ + GS+
Sbjct: 841 IYRSMWRRYCDGDVPSLRRMELLQQQQTQTESVVPEESS--VNPSERTITSAPTDGSIKE 898
Query: 895 NGFNQASPSMLNLSNIEENGVQLNQH 920
NGF L S EENGVQ N +
Sbjct: 899 NGFTAVPALALKSSTSEENGVQSNHN 924
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Eustoma exaltatum subsp. russellianum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1481 bits (3835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 729/915 (79%), Positives = 790/915 (86%), Gaps = 43/915 (4%)
Query: 21 GFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG 80
G LKG QS + GSPV K EGK+A++YA ILRSRNKFVDALA+YE LEKDS
Sbjct: 12 GLLKGVQSSSDSKGSPVK-----KSLEGKEAITYAKILRSRNKFVDALAIYE--LEKDSK 64
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA THCGILYKDEGRLVEAA SY
Sbjct: 65 NVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILYKDEGRLVEAA-SYQ 123
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
KAL ADPSYKPAAECLA VL DLGTSLK GNTQ+GIQKYYEA+KIDPHYAPA YNLGVV
Sbjct: 124 KALQADPSYKPAAECLATVLNDLGTSLK--GNTQEGIQKYYEAVKIDPHYAPACYNLGVV 181
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
YSE+MQYD AL CYE+AA E P YA+AYCN G+IYKNRGDL CLAVSPNFEI
Sbjct: 182 YSEMMQYDVALSCYERAATESPTYADAYCNTGIIYKNRGDL---------CLAVSPNFEI 232
Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320
AKNNM IALTDLGTK KLEGDI+QGVAYYKKALYYNWHY+DAMYNLGVAYGEMLKFDMAI
Sbjct: 233 AKNNMGIALTDLGTKEKLEGDIDQGVAYYKKALYYNWHYSDAMYNLGVAYGEMLKFDMAI 292
Query: 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
+F ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ ALSIKPNFSQSLNNLGVV+TV
Sbjct: 293 IFDELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQKALSIKPNFSQSLNNLGVVFTV 352
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
QGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I LAI+AYEQCLKIDPDSRNAGQ
Sbjct: 353 QGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNIFLAIEAYEQCLKIDPDSRNAGQ 412
Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTH 500
NRLLAMNYINEG DD+L+EAHRDWG RFMRLYSQYTSWDN KDPERPLVIGY SPD+F
Sbjct: 413 NRLLAMNYINEGADDRLYEAHRDWGGRFMRLYSQYTSWDNPKDPERPLVIGYGSPDHF-- 470
Query: 501 SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAA 560
+SYFIEAPL+YHDY+N+KVV YSAVVKADAKT RFRE+V+KKGGIWRDIYGIDEKKVA+
Sbjct: 471 -LSYFIEAPLLYHDYENFKVVTYSAVVKADAKTNRFRERVLKKGGIWRDIYGIDEKKVAS 529
Query: 561 MVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPP 620
M+REDK+DIL+ELTGHTANNKLGMMAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLADP
Sbjct: 530 MIREDKVDILIELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPL 589
Query: 621 ETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWA 680
+TKQKHVEELI+LP CFLCYTPSPEAGPV PTPAL+NGFITFGSFNNLAKITPKVLQVWA
Sbjct: 590 DTKQKHVEELIQLPACFLCYTPSPEAGPVSPTPALSNGFITFGSFNNLAKITPKVLQVWA 649
Query: 681 RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 740
RILCAV NSRL+VKCKPFCC+SVR FLSTLEQLGLES RVDLLPLILLNHDHMQAYSLM
Sbjct: 650 RILCAVSNSRLIVKCKPFCCESVRQTFLSTLEQLGLESTRVDLLPLILLNHDHMQAYSLM 709
Query: 741 DISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQ 800
DISLDTFPYAGTTTTCESLYMGVPC+TM G VHAHNVGVSLL+ VGL HL+AKNED+YV+
Sbjct: 710 DISLDTFPYAGTTTTCESLYMGVPCITMRGLVHAHNVGVSLLSTVGLGHLVAKNEDDYVR 769
Query: 801 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRM 860
LA+QLASDVTAL+NLR++LR+LMSKSP+CDG F LE TYR+MWHRYCKGD+PSL RM
Sbjct: 770 LAVQLASDVTALSNLRLTLRELMSKSPLCDGPKFIQDLELTYRSMWHRYCKGDIPSLSRM 829
Query: 861 EMLQQQ---VVSEE--------PSKF--SEPTKIIFAKEGSPGS-------VMPNGFNQA 900
E+LQ++ VV E+ P K EP E P S + NG+N +
Sbjct: 830 EILQKEELDVVQEQLHQQPNTSPQKLVKDEPADDASGPEHGPASKDNPLVLIKINGYNTS 889
Query: 901 SPSMLNLSNIEENGV 915
S + + EENGV
Sbjct: 890 P-SSITSPSSEENGV 903
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins (By similarity). May function as a negative regulator of GA signal transduction during vernalization, inhibiting adventitious shoot elongation during vernalization. Eustoma exaltatum subsp. russellianum (taxid: 52518) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1477 bits (3824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/821 (84%), Positives = 755/821 (91%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
EG DAL YANILRSRNKF DAL LY VL+KD NVEA IGKGICLQ Q++ R A D F+
Sbjct: 33 EGTDALRYANILRSRNKFADALQLYTTVLDKDGANVEALIGKGICLQAQSLPRQALDCFT 92
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
EAVK+DP+NACA THCG++YKDEG LVEAAE+Y KA SADPSYK A+E LAIVLTDLGTS
Sbjct: 93 EAVKVDPKNACALTHCGMIYKDEGHLVEAAEAYQKARSADPSYKAASEFLAIVLTDLGTS 152
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
LKLAGNT+DGIQKY EAL++D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAE
Sbjct: 153 LKLAGNTEDGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDVALTCYEKAALERPLYAE 212
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
AYCNMGVIYKNRG+L++AIACY+RCL +SPNFEIAKNNMAIALTDLGTKVK+EGDINQGV
Sbjct: 213 AYCNMGVIYKNRGELDAAIACYDRCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGV 272
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
AYYKKAL+YNWHYADAMYNLGVAYGEML F+MAIVFYELA HFNP CAEACNNLGVIYKD
Sbjct: 273 AYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKD 332
Query: 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYN
Sbjct: 333 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYN 392
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
NLGVLYRDAGSI+L++ AYE+CL+IDPDSRNAGQNRLLAMNYI+EG DDKL++AHR+WGK
Sbjct: 393 NLGVLYRDAGSITLSVQAYERCLQIDPDSRNAGQNRLLAMNYIDEGSDDKLYDAHREWGK 452
Query: 467 RFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAV 526
RFM+LY+QYTSWDN K +RPLVIGYVSPD+FTHSVSYF+EAPL +HDY KVVVYS V
Sbjct: 453 RFMKLYAQYTSWDNPKVADRPLVIGYVSPDFFTHSVSYFVEAPLTHHDYTKCKVVVYSGV 512
Query: 527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMA 586
VKADAKT+RF++KV+KKGG+WRDIYGIDEKKVA +VREDK+DILVELTGHTANNKLG MA
Sbjct: 513 VKADAKTLRFKDKVLKKGGVWRDIYGIDEKKVATLVREDKVDILVELTGHTANNKLGTMA 572
Query: 587 CQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEA 646
C+PAP+QVTWIGYPNTTGLP IDYRITDSLAD P T QKHVEEL+RLPE FLCYTPSPEA
Sbjct: 573 CRPAPIQVTWIGYPNTTGLPAIDYRITDSLADSPNTNQKHVEELVRLPESFLCYTPSPEA 632
Query: 647 GPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 706
GPVCPTPA++NGFITFGSFNNLAKITPKV+QVWARILCAVPNSRLVVKCKPFCCDS+R +
Sbjct: 633 GPVCPTPAISNGFITFGSFNNLAKITPKVMQVWARILCAVPNSRLVVKCKPFCCDSIRQK 692
Query: 707 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCV 766
FLSTLE+LGLESLRVDLLPLI LNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCV
Sbjct: 693 FLSTLEELGLESLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCV 752
Query: 767 TMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKS 826
TMAGSVHAHNVGVSLLTKVGL L+AK EDEYV LAL LASDV+AL LR SLR+LM KS
Sbjct: 753 TMAGSVHAHNVGVSLLTKVGLGRLVAKTEDEYVSLALDLASDVSALEELRKSLRELMIKS 812
Query: 827 PVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQV 867
PVCDG++F GLES YR+MWHRYC GD P+L+R+E+L Q
Sbjct: 813 PVCDGESFTRGLESAYRSMWHRYCDGDSPALRRLEVLADQT 853
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1471 bits (3807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/863 (80%), Positives = 771/863 (89%), Gaps = 14/863 (1%)
Query: 7 DVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVD 66
D S GRE + V +P +G V L +GKD L YANILRSRNKF +
Sbjct: 7 DSSEGRESNGV-----------VPERNGGAVPAKQQL---DGKDTLRYANILRSRNKFAE 52
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
AL LY VLEKD NVEA IGKGICLQ Q++ A + F+EAV++DP NACA T+CG++Y
Sbjct: 53 ALQLYNNVLEKDEANVEALIGKGICLQAQSLPMQAIECFNEAVRIDPGNACALTYCGMIY 112
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
KDEG LVEAAE+Y KA +ADPSYKPAAE LAIVLTDLGTSLKLAGNT++GIQKY EAL++
Sbjct: 113 KDEGHLVEAAEAYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAGNTEEGIQKYCEALEV 172
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAEAYCNMGVIYKNRG+LE+AIA
Sbjct: 173 DSHYAPAYYNLGVVYSEMMQFDLALTCYEKAALERPLYAEAYCNMGVIYKNRGELEAAIA 232
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
CYERCL +SPNFEIAKNNMAIALTDLGTKVK+EGDINQGVAYYKKAL+YNWHYADAMYNL
Sbjct: 233 CYERCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNL 292
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
GVAYGEML F+MAIVFYELA HFNP CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN
Sbjct: 293 GVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 352
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
FSQSLNNLGVVYTVQGKMDAA+ MI+KAI AN TYAEAYNNLGVLYRDAGSI+ A+ AYE
Sbjct: 353 FSQSLNNLGVVYTVQGKMDAASSMIQKAIFANSTYAEAYNNLGVLYRDAGSITSAVQAYE 412
Query: 427 QCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPER 486
+CL+IDPDSRNAGQNRLLA+NYI+EG DDKL++AHR+WGKRF++LY QYTSWDN K +R
Sbjct: 413 KCLQIDPDSRNAGQNRLLALNYIDEGFDDKLYQAHREWGKRFLKLYPQYTSWDNPKVADR 472
Query: 487 PLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGI 546
PLVIGYVSPDYFTHSVSYFIEAPL +HDY NYKVVVYS VVKADAKT+RF++KV+KKGG+
Sbjct: 473 PLVIGYVSPDYFTHSVSYFIEAPLAHHDYSNYKVVVYSGVVKADAKTLRFKDKVLKKGGL 532
Query: 547 WRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP 606
WRDIYGIDEKKVA++VREDK+DILVELTGHTANNKLG MAC+PAP+QVTWIGYPNTTGLP
Sbjct: 533 WRDIYGIDEKKVASLVREDKVDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLP 592
Query: 607 TIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFN 666
TIDYRITDSLADPP+T QKHVEEL+RLPE FLCY+PSPEAGPVCPTPA+ NGFITFGSFN
Sbjct: 593 TIDYRITDSLADPPDTTQKHVEELVRLPESFLCYSPSPEAGPVCPTPAILNGFITFGSFN 652
Query: 667 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPL 726
NLAKITPKVLQVWA+ILCAVPNSRLVVKCKPFCCDS+R +FLSTL +LGLE LRVDLLPL
Sbjct: 653 NLAKITPKVLQVWAKILCAVPNSRLVVKCKPFCCDSIRQKFLSTLAELGLEPLRVDLLPL 712
Query: 727 ILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG 786
I LNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG
Sbjct: 713 IHLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG 772
Query: 787 LKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846
L L+AK+E+EYV LAL LA+DVTAL LRMSLR LM+KSPVCDG+NF GLES YRNMW
Sbjct: 773 LGRLVAKSENEYVSLALDLAADVTALQELRMSLRGLMAKSPVCDGENFTRGLESAYRNMW 832
Query: 847 HRYCKGDVPSLKRMEMLQQQVVS 869
RYC GD P+L+R+++LQ++ S
Sbjct: 833 RRYCDGDAPALRRLDLLQEEPCS 855
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 232/814 (28%), Positives = 367/814 (45%), Gaps = 77/814 (9%)
Query: 98 GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
GRL A +A+ L+P AH++ G L K +G + EA Y +A+ P++
Sbjct: 169 GRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTF------ 222
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
AI ++L +G+ +Q Y EA+K+ P + AY NLG VY L + A+ CY+
Sbjct: 223 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQ 281
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
A RP A A+ N+ IY +G L+ AI Y++ L+ P F A NN+ AL D+G
Sbjct: 282 HALQMRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGR- 340
Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
+++ V Y + L ++ AM NLG Y E A ++ +
Sbjct: 341 ------VDEAVRCYNQCLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSA 394
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
NNL +IYK + N A+ CY L I P + +L N G Y G++ A + AI
Sbjct: 395 PFNNLAIIYKQQGNYSDAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAI 454
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD- 454
PT AEA+ NL Y+D+G + AI +Y+Q L + PD A N L + + D
Sbjct: 455 NFRPTMAEAHANLASAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDR 514
Query: 455 DKLFEAHRDWGKR---------------------------FMRLYSQYTSWDNTKDPERP 487
K+F +R R Y+ + S ++ P
Sbjct: 515 SKMFAEVESIIRRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPP 574
Query: 488 LV-----------------IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD 530
IGYVS D+ H +S+ + + H+ +N +V Y+ + A+
Sbjct: 575 FTHPAGLPVKREGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYA--LSAN 632
Query: 531 AKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPA 590
T +R+++ + + D+ + +A ++ +DKI IL+ L G+T + + A QPA
Sbjct: 633 DNT-EWRQRIQSEAEHFLDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPA 691
Query: 591 PVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCY--------TP 642
P+QV+++G+P TTG IDY +TD P + + E+L+ LP C+
Sbjct: 692 PIQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVL 751
Query: 643 SPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 702
P + P L F FN L K+ P+++ W IL VPNS L + P +
Sbjct: 752 DPNSKPKRSDYGLPEDKFIFACFNQLYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEM 811
Query: 703 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG 762
RF + G++ ++ + + + +H++ L D+ LDT G TT + L+ G
Sbjct: 812 ---RFRTYAAAQGVQPDQI-IFTDVAMKSEHIRRSVLADVILDTPLCNGHTTGTDVLWAG 867
Query: 763 VPCVTMAGSVHAHNVGVSLLTKVGLKH-LIAKNEDEYVQLALQLASDVTALANLRMSLRD 821
VP +T+ A V SL GL H +I + +EY + A+ LA + L L LR
Sbjct: 868 VPMITLPLEKMATRVAGSLCLATGLGHGMIVNSLEEYEEKAVSLALNKPKLQALTKELRA 927
Query: 822 LMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVP 855
P+ D + LE +Y MW+ +C G P
Sbjct: 928 SRLTCPLFDTMRWVKNLERSYFKMWNLHCSGQQP 961
|
O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 164/626 (26%), Positives = 282/626 (45%), Gaps = 59/626 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 96 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 155
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 156 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIW 208
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +
Sbjct: 209 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 268
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
Y +G ++ AI Y R + + P+F A N+A AL K +G + + Y AL
Sbjct: 269 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALR 321
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
+AD++ NL E + A+ Y A P A A +NL + + + L +A+
Sbjct: 322 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 381
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
Y+ A+ I P F+ + +N+G + A + +AI NP +A+A++NL +++D
Sbjct: 382 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 441
Query: 415 AGSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNR 442
+G+I AI +Y LK+ PD +A +NR
Sbjct: 442 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 501
Query: 443 LLAMNY-------INEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYV 493
L +++ ++ G + E H + + + + Y + K + L +GYV
Sbjct: 502 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 561
Query: 494 SPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI 553
S D+ H S+ +++ H+ ++V Y+ + D T FR KVM + + D+ I
Sbjct: 562 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQI 618
Query: 554 D-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRI 612
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY I
Sbjct: 619 PCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYII 678
Query: 613 TDSLADPPETKQKHVEELIRLPECFL 638
TD P E +++ E+L +P F
Sbjct: 679 TDQETSPAEVAEQYSEKLAYMPHTFF 704
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 164/626 (26%), Positives = 282/626 (45%), Gaps = 59/626 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 96 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 155
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 156 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIW 208
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +
Sbjct: 209 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 268
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
Y +G ++ AI Y R + + P+F A N+A AL K +G + + Y AL
Sbjct: 269 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALR 321
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
+AD++ NL E + A+ Y A P A A +NL + + + L +A+
Sbjct: 322 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 381
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
Y+ A+ I P F+ + +N+G + A + +AI NP +A+A++NL +++D
Sbjct: 382 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 441
Query: 415 AGSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNR 442
+G+I AI +Y LK+ PD +A +NR
Sbjct: 442 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNR 501
Query: 443 LLAMNY-------INEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYV 493
L +++ ++ G + E H + + + + Y + K + L +GYV
Sbjct: 502 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 561
Query: 494 SPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI 553
S D+ H S+ +++ H+ ++V Y+ + D T FR KVM + + D+ I
Sbjct: 562 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQI 618
Query: 554 D-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRI 612
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY I
Sbjct: 619 PCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYII 678
Query: 613 TDSLADPPETKQKHVEELIRLPECFL 638
TD P E +++ E+L +P F
Sbjct: 679 TDQETSPAEVAEQYSEKLAYMPHTFF 704
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 164/626 (26%), Positives = 282/626 (45%), Gaps = 59/626 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 86 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 145
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 146 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIW 198
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +
Sbjct: 199 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 258
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
Y +G ++ AI Y R + + P+F A N+A AL K +G + + Y AL
Sbjct: 259 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALR 311
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
+AD++ NL E + A+ Y A P A A +NL + + + L +A+
Sbjct: 312 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 371
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
Y+ A+ I P F+ + +N+G + A + +AI NP +A+A++NL +++D
Sbjct: 372 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 431
Query: 415 AGSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNR 442
+G+I AI +Y LK+ PD +A +NR
Sbjct: 432 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNR 491
Query: 443 LLAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYV 493
L +++ ++ G + E H + + + + Y + K + L +GYV
Sbjct: 492 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 551
Query: 494 SPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI 553
S D+ H S+ +++ H+ ++V Y+ + D T FR KVM + + D+ I
Sbjct: 552 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQI 608
Query: 554 D-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRI 612
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY I
Sbjct: 609 PCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYII 668
Query: 613 TDSLADPPETKQKHVEELIRLPECFL 638
TD P E +++ E+L +P F
Sbjct: 669 TDQETSPAEVAEQYSEKLAYMPHTFF 694
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 921 | ||||||
| 255579381 | 930 | o-linked n-acetylglucosamine transferase | 0.996 | 0.987 | 0.874 | 0.0 | |
| 225440809 | 914 | PREDICTED: probable UDP-N-acetylglucosam | 0.991 | 0.998 | 0.872 | 0.0 | |
| 224088480 | 934 | predicted protein [Populus trichocarpa] | 0.995 | 0.981 | 0.850 | 0.0 | |
| 224140075 | 917 | predicted protein [Populus trichocarpa] | 0.978 | 0.982 | 0.868 | 0.0 | |
| 356500631 | 928 | PREDICTED: probable UDP-N-acetylglucosam | 0.994 | 0.987 | 0.856 | 0.0 | |
| 256772634 | 916 | putative SPINDLY protein [Rosa lucieae] | 0.990 | 0.995 | 0.857 | 0.0 | |
| 75318818 | 932 | RecName: Full=Probable UDP-N-acetylgluco | 0.994 | 0.982 | 0.838 | 0.0 | |
| 356534448 | 929 | PREDICTED: probable UDP-N-acetylglucosam | 0.994 | 0.986 | 0.841 | 0.0 | |
| 356505394 | 919 | PREDICTED: probable UDP-N-acetylglucosam | 0.969 | 0.971 | 0.835 | 0.0 | |
| 449526080 | 925 | PREDICTED: probable UDP-N-acetylglucosam | 0.990 | 0.985 | 0.844 | 0.0 |
| >gi|255579381|ref|XP_002530535.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223529939|gb|EEF31867.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1683 bits (4358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/923 (87%), Positives = 857/923 (92%), Gaps = 5/923 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQS-LPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
MAW EK+ NG+E P++DNGFLKG Q P SGSPVAV + LKG E KD+LSYANILR
Sbjct: 1 MAWTEKNNGNGKEGGPIEDNGFLKGTQEPSPSASGSPVAVAAGLKGIEEKDSLSYANILR 60
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
SRNKFVDALA+YE VLEKDSGNVEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA
Sbjct: 61 SRNKFVDALAIYESVLEKDSGNVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACAL 120
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
THCGILYK+EGRLVEAAESY KAL ADP YKPAAECL+IVLTDLGTSLKL+GNTQ+GIQK
Sbjct: 121 THCGILYKEEGRLVEAAESYQKALRADPLYKPAAECLSIVLTDLGTSLKLSGNTQEGIQK 180
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
YYEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVIYKNRG
Sbjct: 181 YYEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAALERPMYAEAYCNMGVIYKNRG 240
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299
DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG+AYYKKALYYNWHY
Sbjct: 241 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGIAYYKKALYYNWHY 300
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
ADAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 301 ADAMYNLGVAYGEMLKFDNAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQT 360
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
ALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I
Sbjct: 361 ALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAGNIP 420
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
+AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEGHD+KLFEAHRDWG+RFMRLY QYT WD
Sbjct: 421 MAINAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDEKLFEAHRDWGRRFMRLYPQYTMWD 480
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK 539
N KD +RPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NYKVVVYSAVVKADAKTIRFREK
Sbjct: 481 NPKDLDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYANYKVVVYSAVVKADAKTIRFREK 540
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
V+K+GGIWRDIYGIDEKKVA+MVRED +DILVELTGHTANNKLGMMAC+PAP+QVTWIGY
Sbjct: 541 VLKQGGIWRDIYGIDEKKVASMVREDNVDILVELTGHTANNKLGMMACRPAPIQVTWIGY 600
Query: 600 PNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGF 659
PNTTGLPTIDYRITDSLADP +TKQKHVEEL+RLP+CFLCYTPSPEAGPVCPTPAL NGF
Sbjct: 601 PNTTGLPTIDYRITDSLADPRDTKQKHVEELVRLPDCFLCYTPSPEAGPVCPTPALANGF 660
Query: 660 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 719
ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR RFL+ LE+LGLESL
Sbjct: 661 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRQRFLTMLEELGLESL 720
Query: 720 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 779
RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG++HAHNVGV
Sbjct: 721 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGAIHAHNVGV 780
Query: 780 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 839
SLL+KVGL HL+A+NED YVQLALQLASD+ AL+NLRMSLRDLMSKSPVCDG F LGLE
Sbjct: 781 SLLSKVGLGHLVAQNEDNYVQLALQLASDIPALSNLRMSLRDLMSKSPVCDGSKFTLGLE 840
Query: 840 STYRNMWHRYCKGDVPSLKRMEMLQQQVVSEE-PSKFSEPTKIIFAKEGSPGSVMPNGFN 898
S+YR+MWHRYCKGDVPSLKRME+L+QQ SE P++ EPT+ F EG P SV NG+N
Sbjct: 841 SSYRDMWHRYCKGDVPSLKRMELLKQQKGSEAVPNENFEPTRNAFPVEGPPESVKLNGYN 900
Query: 899 QASPSMLNLSNIEEN--GVQLNQ 919
S S+LN S+ EEN QLN
Sbjct: 901 IVSSSILNRSS-EENVSQTQLNH 922
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440809|ref|XP_002281883.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera] gi|297740152|emb|CBI30334.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1662 bits (4303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/915 (87%), Positives = 844/915 (92%), Gaps = 2/915 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EK+V NGR+R+PV NGF K S +S S + G K FEGKDALSYANILRS
Sbjct: 1 MAWTEKEVGNGRDREPVGGNGFSK--VSQTSSSTSSTSPGCLPKKFEGKDALSYANILRS 58
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALA+YE +LEKD+GNVEAHIGKGICLQMQNMGRLAF+SFSEA++ DPQN CA T
Sbjct: 59 RNKFADALAMYENILEKDNGNVEAHIGKGICLQMQNMGRLAFESFSEAIRQDPQNLCALT 118
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
H GILYKDEGRL+EAAESY KAL D SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 119 HLGILYKDEGRLLEAAESYDKALRIDSSYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 178
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 179 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAALERPMYAEAYCNMGVIFKNRGD 238
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 239 LESAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 298
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+A
Sbjct: 299 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLA 358
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+IS+
Sbjct: 359 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNISM 418
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG+DDKLFEAHRDWG+RFMRLY QYTSWDN
Sbjct: 419 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGNDDKLFEAHRDWGRRFMRLYPQYTSWDN 478
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERPLV+GYVSPDYFTHSVSYFIEAPLV HDY NYKVVVYSAVVKADAKTIRFR+KV
Sbjct: 479 PKDPERPLVVGYVSPDYFTHSVSYFIEAPLVNHDYANYKVVVYSAVVKADAKTIRFRDKV 538
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 539 LKRGGVWRDIYGIDEKKVASMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 598
Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
NTTGLPTIDYRITDSLAD P+T QKHVEEL+RLPECFLCY PSPEAGPV PTPAL+NGFI
Sbjct: 599 NTTGLPTIDYRITDSLADLPDTSQKHVEELVRLPECFLCYMPSPEAGPVSPTPALSNGFI 658
Query: 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 720
TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR RFLSTLEQLGLESLR
Sbjct: 659 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLESLR 718
Query: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780
VDLLPLILLNHDHMQAY+LMDISLDTFPYAGTTTTCESL+MGVPCVTMAGSVHAHNVGVS
Sbjct: 719 VDLLPLILLNHDHMQAYALMDISLDTFPYAGTTTTCESLFMGVPCVTMAGSVHAHNVGVS 778
Query: 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 840
LL KVGL L+AK EDEYVQLALQLASD+TAL+NLRMSLRDLMSKSPVC+G NFAL LES
Sbjct: 779 LLNKVGLGRLVAKTEDEYVQLALQLASDITALSNLRMSLRDLMSKSPVCNGPNFALALES 838
Query: 841 TYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEPSKFSEPTKIIFAKEGSPGSVMPNGFNQA 900
TYR+MW RYCKGDVPSL+RME+LQQ+ E K EPTKI +++ S GS+ NG NQ
Sbjct: 839 TYRSMWRRYCKGDVPSLRRMEILQQENSEEPVVKLPEPTKITNSRDDSSGSIKTNGLNQV 898
Query: 901 SPSMLNLSNIEENGV 915
SML S EENGV
Sbjct: 899 PSSMLKHSTSEENGV 913
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088480|ref|XP_002308458.1| predicted protein [Populus trichocarpa] gi|222854434|gb|EEE91981.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1655 bits (4287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 788/926 (85%), Positives = 844/926 (91%), Gaps = 9/926 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW E D N RE++P DNGFLKG Q P SGS V KGF+GKDALSYANILRS
Sbjct: 1 MAWTENDAGNVREKEPTGDNGFLKGSQPSPDPSGSRVGSSPAQKGFDGKDALSYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE LE DSGNVEA+IGKGICLQMQNM RLAFDSF+EA+KLDP+NACA T
Sbjct: 61 RNKFADALALYESALENDSGNVEAYIGKGICLQMQNMERLAFDSFAEAIKLDPENACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL+EAAESYHKAL ADPSYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADPSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
Y+ALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YDALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV YYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVTYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKF+MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 301 DAMYNLGVAYGEMLKFEMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQAT 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRD G+I++
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDVGNITM 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGHDDKLF+AHR+WG+RFMRLY Q+TSWDN
Sbjct: 421 AISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFQAHREWGRRFMRLYPQFTSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
K PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NY VVVYSAVVK+DAKT RFREKV
Sbjct: 481 PKVPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYANYMVVVYSAVVKSDAKTNRFREKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+WRDIYGIDEKKVA+M+REDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKKGGMWRDIYGIDEKKVASMIREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
NTTGLPTIDYRITDS DPP TKQKHVEEL+RLPECFLCY PSPEAGPV PTPAL+NGFI
Sbjct: 601 NTTGLPTIDYRITDSFTDPPHTKQKHVEELVRLPECFLCYIPSPEAGPVTPTPALSNGFI 660
Query: 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 720
TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPF CDSVR RFL+ LEQLGLE LR
Sbjct: 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFGCDSVRQRFLTVLEQLGLEPLR 720
Query: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780
VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPC+TMAG+VHAHNVGVS
Sbjct: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCITMAGAVHAHNVGVS 780
Query: 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 840
LL+KVGL HL+AKNE+EYVQLALQLASD++AL+NLRMSLR+LMSKSPVCDG NF LGLE+
Sbjct: 781 LLSKVGLGHLVAKNEEEYVQLALQLASDISALSNLRMSLRELMSKSPVCDGPNFTLGLET 840
Query: 841 TYRNMWHRYCKGDVPSLKRMEMLQQQVVSEE-PSKFSEPTKIIFAKEGS-------PGSV 892
TYRNMWHRYCKGDVPSL+R+E+LQQQ + E+ P K S+ T I +++G P SV
Sbjct: 841 TYRNMWHRYCKGDVPSLRRIELLQQQGIPEDVPIKNSDSTTITSSRDGPPESRDGLPESV 900
Query: 893 MPNGFNQASPSMLNLSNIEENGVQLN 918
NGF+ SP +N S EN Q+N
Sbjct: 901 KANGFSAVSPPTVNHS-CGENRSQVN 925
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140075|ref|XP_002323412.1| predicted protein [Populus trichocarpa] gi|222868042|gb|EEF05173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1655 bits (4286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 787/906 (86%), Positives = 838/906 (92%), Gaps = 5/906 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW E D + RE++ ++DNGFLKG Q GTSGSPV KGFEGKDALSYANILRS
Sbjct: 1 MAWTENDAGSVREKELIEDNGFLKGSQPSTGTSGSPVVSSPVQKGFEGKDALSYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE VLEKDSG VEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA T
Sbjct: 61 RNKFADALALYESVLEKDSGIVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL+EAAESYHKAL AD SYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADLSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAMERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTD GTKVKLEGDI+QGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDFGTKVKLEGDISQGVAYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ-- 358
DAMYNLGVAYGEMLKF+MAIVFYELAF+FNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 301 DAMYNLGVAYGEMLKFEMAIVFYELAFNFNPHCAEACNNLGVIYKDRDNLDKAVECYQAN 360
Query: 359 --MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG
Sbjct: 361 SDTSLSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAG 420
Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYT 476
+IS+AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG+RFMRLY QYT
Sbjct: 421 NISMAISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGRRFMRLYPQYT 480
Query: 477 SWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRF 536
SWDN K P+RPLVIGYVSPDYFTHSVSYFIEAPLVYH Y NYKVVVYSAVVK DAKT RF
Sbjct: 481 SWDNPKVPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHVYANYKVVVYSAVVKPDAKTNRF 540
Query: 537 REKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTW 596
+EKV+K+GGIWRDIYGIDEKKVA MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTW
Sbjct: 541 KEKVLKRGGIWRDIYGIDEKKVAIMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTW 600
Query: 597 IGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALT 656
IGYPNTTGLPTIDYRITDS ADPP+TKQKHVEELIRLPECFLCY PSPEAGPV PTPAL+
Sbjct: 601 IGYPNTTGLPTIDYRITDSFADPPDTKQKHVEELIRLPECFLCYIPSPEAGPVAPTPALS 660
Query: 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGL 716
NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR RFL+ LEQLGL
Sbjct: 661 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRQRFLTMLEQLGL 720
Query: 717 ESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN 776
E L VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG+VHAHN
Sbjct: 721 EPLHVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGAVHAHN 780
Query: 777 VGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFAL 836
VG SLL+ VGL HL+AKNE+EYVQ ALQLASD+ AL+NLRMSLRDLMSKSPVCDG NF L
Sbjct: 781 VGASLLSNVGLGHLVAKNEEEYVQSALQLASDIAALSNLRMSLRDLMSKSPVCDGPNFTL 840
Query: 837 GLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEE-PSKFSEPTKIIFAKEGSPGSVMPN 895
GLE+TYRNMWHRYCKGDVPSL+R+E+LQQQ V +E P K ++ T+I +++G P S+ N
Sbjct: 841 GLETTYRNMWHRYCKGDVPSLRRIELLQQQEVPKEVPIKNTDSTRITSSRDGPPESIKAN 900
Query: 896 GFNQAS 901
GF+ S
Sbjct: 901 GFSAVS 906
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500631|ref|XP_003519135.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|401721241|gb|AFP99901.1| putative UDP-N-acetylglucosamin [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1645 bits (4261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/921 (85%), Positives = 845/921 (91%), Gaps = 5/921 (0%)
Query: 1 MAWVE-KDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
MAW E D +NGRE+ V +NGFLK S P + GS GS K EGKD +SYANILR
Sbjct: 1 MAWTEDSDGNNGREK-LVGENGFLK--VSEPSSDGSVGDGGSVSKRCEGKDDVSYANILR 57
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
SRNKFVDALALYE VLE D GNVEA IGKGICLQMQNMGRLAF+SF+EA++LDPQNACA
Sbjct: 58 SRNKFVDALALYERVLESDGGNVEALIGKGICLQMQNMGRLAFESFAEAIRLDPQNACAL 117
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
THCGILYKDEGRLVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQK
Sbjct: 118 THCGILYKDEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQK 177
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Y+EALKIDPHYAPAYYNLGVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNRG
Sbjct: 178 YFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNRG 237
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299
DLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI+ GVA+YKKALYYNWHY
Sbjct: 238 DLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIDHGVAFYKKALYYNWHY 297
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+
Sbjct: 298 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQL 357
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I+
Sbjct: 358 ALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIA 417
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
LAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLYSQ+TSWD
Sbjct: 418 LAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYSQFTSWD 477
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK 539
N+KDPERPLVIGYVSPDYFTHSVSYFIEAPL+YHDY NYKVVVYSAVVKADAKTIRFREK
Sbjct: 478 NSKDPERPLVIGYVSPDYFTHSVSYFIEAPLLYHDYTNYKVVVYSAVVKADAKTIRFREK 537
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
V+KKGGIW+DIYG DEKKVA MVRED++DIL+ELTGHTANNKLGMMAC+PAPVQVTWIGY
Sbjct: 538 VLKKGGIWKDIYGTDEKKVADMVREDQVDILIELTGHTANNKLGMMACRPAPVQVTWIGY 597
Query: 600 PNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGF 659
PNTTGLPTIDYRITDS ADPPETKQKHVEEL+RLP+CFLCYTPSPEAGPVCPTPAL+NGF
Sbjct: 598 PNTTGLPTIDYRITDSQADPPETKQKHVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGF 657
Query: 660 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 719
+TFGSFNNLAKITPKVLQVWA+ILCA+PNSRLVVKCKPFCCDSVR RFLSTLE+LGLE L
Sbjct: 658 VTFGSFNNLAKITPKVLQVWAKILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEKLGLEPL 717
Query: 720 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 779
RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV
Sbjct: 718 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 777
Query: 780 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 839
SLL+KVGL +LIAKNEDEYV+LA++LASD++AL NLRMSLR+LMSKSP+C+G F LGLE
Sbjct: 778 SLLSKVGLGNLIAKNEDEYVKLAVKLASDISALQNLRMSLRELMSKSPLCNGAKFTLGLE 837
Query: 840 STYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEPS-KFSEPTKIIFAKEGSPGSVMPNGFN 898
STYR MW RYCKGDVP+LKRME+LQQ V S +PS K SEPT+ + EGSPGSV NGF+
Sbjct: 838 STYRKMWRRYCKGDVPALKRMELLQQPVSSNDPSNKNSEPTRATNSSEGSPGSVKANGFS 897
Query: 899 QASPSMLNLSNIEENGVQLNQ 919
P LN N EENG LN
Sbjct: 898 STQPPKLNFVNCEENGGSLNH 918
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256772634|emb|CAX46402.1| putative SPINDLY protein [Rosa lucieae] | Back alignment and taxonomy information |
|---|
Score = 1643 bits (4254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 788/919 (85%), Positives = 844/919 (91%), Gaps = 7/919 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKG---FEGKDALSYANI 57
MAW +KD NG+E DPV +NGFL Q P TSGS +A G+T +G FE K+ +SYANI
Sbjct: 1 MAWTDKDGCNGKEGDPVVENGFLNCSQPSPSTSGSLLA-GATPEGGKSFEVKETISYANI 59
Query: 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117
LRSRNKF DAL+LYE VL+KD+ NVEAHIGKGICLQM+NMGRLAFDSF+EA+KLD +NAC
Sbjct: 60 LRSRNKFSDALSLYETVLDKDARNVEAHIGKGICLQMKNMGRLAFDSFTEAIKLDSENAC 119
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
A THCGILYKDEGRL EAAESY KAL+ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG+
Sbjct: 120 ALTHCGILYKDEGRLREAAESYQKALNADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGL 179
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
QKYYEALK DPHYAPAYYNLGVVYSE+MQ+DTAL CYEKAALERPMY EAYCNMGVIYKN
Sbjct: 180 QKYYEALKTDPHYAPAYYNLGVVYSEMMQFDTALTCYEKAALERPMYTEAYCNMGVIYKN 239
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI+QG+AYYKKALYYNW
Sbjct: 240 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIDQGIAYYKKALYYNW 299
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY
Sbjct: 300 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 359
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
QMALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+
Sbjct: 360 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGN 419
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
IS+AIDAYEQCLKIDPDSRNAGQNRLLAMNYI+EG DDKLF AHRDWG+RFMRL SQ+TS
Sbjct: 420 ISMAIDAYEQCLKIDPDSRNAGQNRLLAMNYIHEGQDDKLFVAHRDWGRRFMRLSSQHTS 479
Query: 478 WDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFR 537
WDN KDPERPLVIGYVSPDYFTHSVSYFIEAPL +H+Y YKVVVYSAVVKADAKTIRFR
Sbjct: 480 WDNLKDPERPLVIGYVSPDYFTHSVSYFIEAPLAHHEYAKYKVVVYSAVVKADAKTIRFR 539
Query: 538 EKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 597
+KV+KKGGIWRDIYGIDEKKVA++VREDKIDILVELTGHTANNKLG MAC+PAPVQVTWI
Sbjct: 540 DKVLKKGGIWRDIYGIDEKKVASIVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWI 599
Query: 598 GYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN 657
GYPNTTGLP IDYRITDSLAD P++KQKHVEEL+RLPECFLCYTPSPEAGPV PTPAL+N
Sbjct: 600 GYPNTTGLPAIDYRITDSLADSPDSKQKHVEELVRLPECFLCYTPSPEAGPVSPTPALSN 659
Query: 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE 717
GFITFGSFNNLAKITPKVLQVWARIL A+PNSRLVVKCKPF CDSVR RFLSTLEQLGLE
Sbjct: 660 GFITFGSFNNLAKITPKVLQVWARILSAIPNSRLVVKCKPFSCDSVRERFLSTLEQLGLE 719
Query: 718 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 777
LRVDLLPLILLN+DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV
Sbjct: 720 PLRVDLLPLILLNYDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 779
Query: 778 GVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 837
GVS+L+ VGL +LIAKNE+EYVQLA+QLASD+TAL+NLRMSLRDLMS+SPVCDG F LG
Sbjct: 780 GVSILSTVGLGNLIAKNEEEYVQLAVQLASDITALSNLRMSLRDLMSRSPVCDGPKFTLG 839
Query: 838 LESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEP-SKFSEPTKIIFAKEGSPGSVMPNG 896
LES YRNMW RYCKGDVPS + ME+LQQ+V EEP +K +EP +I + G P S+ NG
Sbjct: 840 LESAYRNMWGRYCKGDVPSQRHMEILQQEVTPEEPTTKIAEPIRI--TESGFPASIKSNG 897
Query: 897 FNQASPSMLNLSNIEENGV 915
FN M NLS+ EENGV
Sbjct: 898 FNPCPTPMANLSSSEENGV 916
|
Source: Rosa lucieae Species: Rosa lucieae Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75318818|sp|O82039.1|SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY gi|3319682|emb|CAA76834.1| SPINDLY protein [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 1634 bits (4232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/927 (83%), Positives = 840/927 (90%), Gaps = 11/927 (1%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E D + +NGFLKG QS + GSPV + K FEGKDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61 RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG RFMRLY QY SWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKLYEAHRDWGWRFMRLYQQYNSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
+KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY NYKVV+YSAVVKADAKT RFR+KV
Sbjct: 481 SKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKADAKTNRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
NTTGLPTIDYRITDS+ADPP TKQKHVEEL+RLP+ FLCYTPSPEAGPV P PALTNGF+
Sbjct: 601 NTTGLPTIDYRITDSMADPPSTKQKHVEELVRLPDSFLCYTPSPEAGPVSPAPALTNGFV 660
Query: 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 720
TFGSFNNLAKITPKVLQVWARILCAVP+SRL+VKCKPF CDSVR RFLS LEQLGLE R
Sbjct: 661 TFGSFNNLAKITPKVLQVWARILCAVPHSRLIVKCKPFGCDSVRQRFLSILEQLGLEPQR 720
Query: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780
VDL+PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTM GSVHAHNVGVS
Sbjct: 721 VDLVPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMGGSVHAHNVGVS 780
Query: 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 840
LL VGL+ L+A+NEDEYV+LA+QLASDVT+L+NLRMSLR+LM+KSP+CDG F LES
Sbjct: 781 LLKTVGLRKLVARNEDEYVELAIQLASDVTSLSNLRMSLRELMAKSPLCDGAQFTQNLES 840
Query: 841 TYRNMWHRYCKGDVPSLKRME-------MLQQQVVSEE-PSKFSEPTKIIFAKEGSPGSV 892
TYR+MW RYC GDVPSL+RME L + VV EE P E T+I +K+ G +
Sbjct: 841 TYRSMWRRYCDGDVPSLRRMELLQQQQQTLAELVVPEESPVSPIEKTRISASKD---GPI 897
Query: 893 MPNGFNQASPSMLNLSNIEENGVQLNQ 919
NGF + + N S IEENGVQLNQ
Sbjct: 898 KENGFTVSPALVYNSSTIEENGVQLNQ 924
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534448|ref|XP_003535766.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1615 bits (4182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/922 (84%), Positives = 839/922 (90%), Gaps = 6/922 (0%)
Query: 1 MAWVE-KDVSNGRERDPVQDNGFLKGPQSLP-GTSGSPVAVGSTLKGFEGKDALSYANIL 58
MAW E D +NGRE+ V +NGFL + P G+ G V+V + +EGKD + +ANIL
Sbjct: 1 MAWTEDNDENNGREKKMVGENGFLIVSEPSPAGSGGDGVSVSTR---YEGKDDVLFANIL 57
Query: 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
RSRNKFVDALALYE VLE D GNVEA +GKGICLQMQNMGRLAF+SF+EA+++DPQNACA
Sbjct: 58 RSRNKFVDALALYERVLESDGGNVEALVGKGICLQMQNMGRLAFESFAEAIRMDPQNACA 117
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
THCGILYKDEG LVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQ
Sbjct: 118 LTHCGILYKDEGCLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQ 177
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238
KY+EALKIDPHYAPAYYNLGVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNR
Sbjct: 178 KYFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNR 237
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
GDLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN+GVA+YKKAL+YNWH
Sbjct: 238 GDLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVAFYKKALHYNWH 297
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 298 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 357
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
+AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I
Sbjct: 358 LALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDI 417
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
SLAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLY Q+TSW
Sbjct: 418 SLAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYPQFTSW 477
Query: 479 DNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE 538
DN+KDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NYKV+VYSAVVKADAKTIRFRE
Sbjct: 478 DNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTIRFRE 537
Query: 539 KVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIG 598
KV+KKGGIW+DIYG DEKKVA MVR+D++DIL+ELTGHTANNKLGM+AC+PAPVQVTWIG
Sbjct: 538 KVLKKGGIWKDIYGTDEKKVADMVRQDQVDILIELTGHTANNKLGMLACRPAPVQVTWIG 597
Query: 599 YPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNG 658
YPNTTGLPTIDYRITDS ADPPETKQKHVEEL+RLP+ FLCYTPSPEAGPVCPTPAL+NG
Sbjct: 598 YPNTTGLPTIDYRITDSRADPPETKQKHVEELVRLPDSFLCYTPSPEAGPVCPTPALSNG 657
Query: 659 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 718
F+TFGSFNNLAKITPKVLQVWA+ILCA+PNSRLVVKCKPFCCDSVR RFLSTLE+LGLE
Sbjct: 658 FVTFGSFNNLAKITPKVLQVWAKILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEKLGLEP 717
Query: 719 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 778
LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG
Sbjct: 718 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 777
Query: 779 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838
VSLL+KVGL +LIAKNEDEYV+LAL+LASD++AL NLRMSLR+LMSKSP+CDG F LGL
Sbjct: 778 VSLLSKVGLGNLIAKNEDEYVKLALKLASDISALQNLRMSLRELMSKSPLCDGAKFILGL 837
Query: 839 ESTYRNMWHRYCKGDVPSLKRMEMLQQQV-VSEEPSKFSEPTKIIFAKEGSPGSVMPNGF 897
ESTYR MW RYCKGDVP+LK ME+LQQ V + SK SEPT+ + EGSP SV NGF
Sbjct: 838 ESTYRQMWRRYCKGDVPALKCMELLQQPVSSNNPSSKNSEPTRATNSSEGSPESVKANGF 897
Query: 898 NQASPSMLNLSNIEENGVQLNQ 919
+ P LN N EENG LN
Sbjct: 898 SSTQPPKLNFLNCEENGGSLNH 919
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505394|ref|XP_003521476.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1605 bits (4157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/906 (83%), Positives = 822/906 (90%), Gaps = 13/906 (1%)
Query: 10 NGRERDPVQD--NGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDA 67
NG ER+ + NGF + P++ SG EG D++SYAN+LRSRNKFVDA
Sbjct: 11 NGSERELAGNSYNGFAEAPEASVSASGC-----------EGNDSVSYANVLRSRNKFVDA 59
Query: 68 LALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127
L++YE VLE D NVEA IGKGICLQMQN GRLA++SFSEA+K+DPQNACA THCGIL+K
Sbjct: 60 LSIYERVLESDGANVEALIGKGICLQMQNKGRLAYESFSEAIKVDPQNACALTHCGILHK 119
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
DEGRLVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQDGIQKY+EALK+D
Sbjct: 120 DEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKVD 179
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
PHYAPAYYNLGVVYSE+MQYDTAL YEKAA ERP+YAEAYCNMGVI+KNRGDLESAI C
Sbjct: 180 PHYAPAYYNLGVVYSEMMQYDTALSFYEKAASERPIYAEAYCNMGVIFKNRGDLESAITC 239
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
YERCL VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV YKKALYYNWHYADAMYNLG
Sbjct: 240 YERCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVTLYKKALYYNWHYADAMYNLG 299
Query: 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR+NLDKAVECYQ+ALSIKPNF
Sbjct: 300 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNF 359
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
SQSLNNLGVVYTVQGK+DAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I+ AI+AYEQ
Sbjct: 360 SQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQ 419
Query: 428 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERP 487
CLKIDPDSRNAGQNRLLAMNYI EGHDD LFE HRDWG+RFMRLY QYTSWDN+KDPERP
Sbjct: 420 CLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYPQYTSWDNSKDPERP 479
Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 547
LVIGYVSPDYFTHSVSYFIE PLVYHDY N+KV+VYSAVVKAD+KTIRFREKV+ KGGIW
Sbjct: 480 LVIGYVSPDYFTHSVSYFIETPLVYHDYSNFKVIVYSAVVKADSKTIRFREKVLNKGGIW 539
Query: 548 RDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPT 607
+DIYGIDEK+VA MVRED++DILVELTGHTA+NKLGMMAC+PAP+QVTWIGYPNTTGLPT
Sbjct: 540 KDIYGIDEKRVANMVREDQVDILVELTGHTASNKLGMMACRPAPIQVTWIGYPNTTGLPT 599
Query: 608 IDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN 667
IDYRITDSLADPPETKQKHVEEL+RLPECFLCYTPSPEAGP+CPTPAL+NGF+TFGSFNN
Sbjct: 600 IDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSPEAGPICPTPALSNGFVTFGSFNN 659
Query: 668 LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 727
LAKITPKVLQVWARILCA+PNSRLVVKCKPFC DSVR RFLSTLEQLGLE LRVDLLPLI
Sbjct: 660 LAKITPKVLQVWARILCAIPNSRLVVKCKPFCSDSVRQRFLSTLEQLGLEPLRVDLLPLI 719
Query: 728 LLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 787
LLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL+KVGL
Sbjct: 720 LLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGL 779
Query: 788 KHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847
+HLIA+NEDEYV+LA QLASD++AL NLRMSLR+LMSKSP+CDG F LGLESTYR MWH
Sbjct: 780 EHLIARNEDEYVELAQQLASDISALQNLRMSLRNLMSKSPLCDGAKFILGLESTYRKMWH 839
Query: 848 RYCKGDVPSLKRMEMLQQQVVSEEPSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNL 907
RYC+GDVPSLKR+E+LQ+ + +K SEPT+I ++E SPGSV NG+N S LN+
Sbjct: 840 RYCRGDVPSLKRLELLQEVATGDLSNKNSEPTRIANSREDSPGSVKANGYNTIPASKLNI 899
Query: 908 SNIEEN 913
EEN
Sbjct: 900 HTREEN 905
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526080|ref|XP_004170042.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1600 bits (4144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 772/914 (84%), Positives = 836/914 (91%), Gaps = 2/914 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M EKD S+G+E PV++NGFL+G QS +S S V++ S K EGKD L +ANILRS
Sbjct: 1 MERTEKDDSSGKEIVPVRENGFLQGSQSSSQSSSSLVSIDSAEKKVEGKDGLFFANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DAL LYE VLEKD N+EAHIGKGICLQMQNM + AF+SF+EA++LDPQNACA T
Sbjct: 61 RNKFSDALVLYEKVLEKDGDNLEAHIGKGICLQMQNMIKPAFESFAEAIRLDPQNACAFT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYK+EGRLVEAAESY KAL DPSY+PAAECLA+VLTDLGTSLKL+GN+QDGIQKY
Sbjct: 121 HCGILYKEEGRLVEAAESYQKALRVDPSYRPAAECLAVVLTDLGTSLKLSGNSQDGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAAFERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK+ALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKRALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEACNNLGVIYKD+DNLDKAVECYQ+A
Sbjct: 301 DAMYNLGVAYGEMLKFDTAIVFYELAFHFNPHCAEACNNLGVIYKDQDNLDKAVECYQLA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVL+RDAG+I +
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLHRDAGNIEM 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
A+DAYE+CLKIDPDSRNAGQNRLLAMNY +EGH+DKL+EAHRDWG+RFMRLY QYTSWDN
Sbjct: 421 AVDAYERCLKIDPDSRNAGQNRLLAMNYTDEGHEDKLYEAHRDWGRRFMRLYPQYTSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERPLVIGYVSPDYFTHSVSYF+EAPLV+HDY NYKVVVYSAVVKADAKTIRFR+KV
Sbjct: 481 PKDPERPLVIGYVSPDYFTHSVSYFVEAPLVHHDYANYKVVVYSAVVKADAKTIRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKQGGVWRDIYGIDEKKVASMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
NTTGLPTIDYRITD+L DPP TKQKHVEEL+RLPECFLCYTPSPEAG V PAL+NGFI
Sbjct: 601 NTTGLPTIDYRITDALTDPPNTKQKHVEELVRLPECFLCYTPSPEAGSVSSAPALSNGFI 660
Query: 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 720
TFGSFNNLAKITPKVL+VWARILCA+PNSRLVVKCKPFCCDSVR RFLSTLEQLGLES R
Sbjct: 661 TFGSFNNLAKITPKVLEVWARILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLESQR 720
Query: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780
VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS
Sbjct: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780
Query: 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 840
LL+KVGL HL+AKNE+EYV+LALQLASDVTAL+NLRMSLR+LMSKSPVCDG NF LGLES
Sbjct: 781 LLSKVGLGHLVAKNEEEYVKLALQLASDVTALSNLRMSLRNLMSKSPVCDGPNFILGLES 840
Query: 841 TYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEPSKFSEPTKIIFAKEGSPGSVMPNGFNQA 900
TYR MWHRYCKGDVPSL+RME++QQ+ ++EE ++ I A + SP S NG
Sbjct: 841 TYRKMWHRYCKGDVPSLRRMEIVQQRELTEETITTTDSN--ITALKESPASTQSNGHCPV 898
Query: 901 SPSMLNLSNIEENG 914
S +L+ S ENG
Sbjct: 899 SLDVLDRSPCGENG 912
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 921 | ||||||
| TAIR|locus:2080722 | 914 | SPY "SPINDLY" [Arabidopsis tha | 0.973 | 0.981 | 0.802 | 0.0 | |
| UNIPROTKB|Q749Z1 | 585 | GSU2601 "TPR domain/SEC-C moti | 0.595 | 0.936 | 0.382 | 4.2e-102 | |
| TIGR_CMR|GSU_2601 | 585 | GSU_2601 "TPR domain/SEC-C mot | 0.595 | 0.936 | 0.382 | 4.2e-102 | |
| UNIPROTKB|Q608I2 | 699 | MCA1509 "TPR domain protein" [ | 0.668 | 0.881 | 0.319 | 3e-78 | |
| TAIR|locus:2103025 | 977 | SEC "secret agent" [Arabidopsi | 0.391 | 0.369 | 0.286 | 5.3e-73 | |
| WB|WBGene00003858 | 1151 | ogt-1 [Caenorhabditis elegans | 0.426 | 0.341 | 0.271 | 1.8e-67 | |
| UNIPROTKB|O18158 | 1151 | ogt-1 "UDP-N-acetylglucosamine | 0.426 | 0.341 | 0.271 | 1.8e-67 | |
| UNIPROTKB|A5D7G1 | 1036 | OGT "OGT protein" [Bos taurus | 0.563 | 0.500 | 0.263 | 1.4e-66 | |
| UNIPROTKB|F1RSV2 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.563 | 0.496 | 0.263 | 1.5e-66 | |
| UNIPROTKB|P81436 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.563 | 0.496 | 0.263 | 1.5e-66 |
| TAIR|locus:2080722 SPY "SPINDLY" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3861 (1364.2 bits), Expect = 0., P = 0.
Identities = 728/907 (80%), Positives = 793/907 (87%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M +E D RER PV +NGF G +S ++G + + K +G D LSYANILR+
Sbjct: 1 MVGLEDDTE--RERSPVVENGFSNGSRSSSSSAG---VLSPSRKVTQGNDTLSYANILRA 55
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE +LEKDS NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA T
Sbjct: 56 RNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALT 115
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGIL+K+EGRLVEAAESY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 116 HCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 175
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGD
Sbjct: 176 YEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGD 235
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LE AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD+ QGVAYYKKALYYNWHYA
Sbjct: 236 LEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNWHYA 295
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECYQMA
Sbjct: 296 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECYQMA 355
Query: 361 LSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNF+QSLNNLGVVYTVQG NPTYAEA+NNLGVLYRDAG+I++
Sbjct: 356 LSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITM 415
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AIDAYE+CLKIDPDSRNAGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTSWDN
Sbjct: 416 AIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDN 475
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKV 540
KDPERP+ IGY+SPD+FTHSVSYFIEAPL +HDY Y T RFR+KV
Sbjct: 476 LKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKV 535
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+W+DIYGIDEKK+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQVTWIGYP
Sbjct: 536 LKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYP 595
Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
NTTGLPT+DYRITDSLADPP+TKQK VEEL+RLP+CFLCYTPSPEAGPVCPTPAL+NGF+
Sbjct: 596 NTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGFV 655
Query: 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 720
TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS+R RFL+TLEQLGLES R
Sbjct: 656 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLESKR 715
Query: 721 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780
VDLLPLIL NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS
Sbjct: 716 VDLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 775
Query: 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 840
LLTKVGL HL+AKNEDEYVQL++ LASDVTAL+ LRMSLRDLM+ SPVC+G +FA+GLES
Sbjct: 776 LLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVGLES 835
Query: 841 TYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEP--SKFSEPTKIIFAKEGSPGSVMPNGFN 898
YRNMW +YCKG+VPSL+RMEMLQ++V ++P SK P+++ E +P S+ NG +
Sbjct: 836 AYRNMWKKYCKGEVPSLRRMEMLQKEV-HDDPLISKDLGPSRVSVTGEATP-SLKANG-S 892
Query: 899 QASPSML 905
PS L
Sbjct: 893 APVPSSL 899
|
|
| UNIPROTKB|Q749Z1 GSU2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 211/552 (38%), Positives = 310/552 (56%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+ ++ G A+ DMA+ Y A P A+A NLGV+++ + LD+A ++
Sbjct: 35 AEMLWRAGNAHLAGGALDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRS 94
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 419
A+S +++++ NNLG + QG P +A AY+NLG R G +
Sbjct: 95 AISFNRDYAKAYNNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLD 154
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
+ A+ I+P + L+ ++Y ++ D+ LF H WG++ + +
Sbjct: 155 ETLAAFRTAHAINPHDPVFHSDLLMMLHY-SDMDDETLFREHVRWGEQHAPAAASVPTHQ 213
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREK 539
+DP R L IGYVS D+ H V YF+ L HD + + R K
Sbjct: 214 CDRDPGRKLRIGYVSGDFGKHPVGYFLLPFLENHDRSQFEICCYSERGQRQEDDVTARIK 273
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
+WR G+ + VA M+R D IDILV+L GHTA+N+L + A +PAPVQVTW+GY
Sbjct: 274 --GHADLWRRTIGLGDAAVAEMIRADGIDILVDLAGHTAHNRLRVFALKPAPVQVTWLGY 331
Query: 600 PNTTGLPTIDYRITDSLADPPETKQK-HVEELIRLPECFLCYTPSPEAGPVCPTPALTNG 658
PNTTGL +DYRITD++ADPP + H E+LIRL + FLCYTP A PV P L
Sbjct: 332 PNTTGLRAMDYRITDAVADPPGSADALHTEQLIRLEQGFLCYTPPAGAPPVGEAPCLAGA 391
Query: 659 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 718
+TFGSFNNLAK++P+V+ W+ IL VP SRL++K K F ++ R R G+
Sbjct: 392 GVTFGSFNNLAKVSPQVIDAWSAILGRVPGSRLMLKFKGFADETCRRRVSDAFGARGVSP 451
Query: 719 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 778
R++L+ + +DH+ Y+ +D++LDTFPY GT TTC++L+MGVP +T G+ H VG
Sbjct: 452 DRLELVSFVENFNDHLALYNRLDLALDTFPYNGTATTCDALWMGVPVLTCCGTRHVARVG 511
Query: 779 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838
S+LT +GL LI + +EY+ A LA+D LA LR +R ++ SP+CD FA +
Sbjct: 512 ASILTSLGLPELITHSPEEYISAAAALAADPARLAALRRDMRPRLAASPLCDPTGFARRM 571
Query: 839 ESTYRNMWHRYC 850
E+ R++W R+C
Sbjct: 572 ETALRDIWRRWC 583
|
|
| TIGR_CMR|GSU_2601 GSU_2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 211/552 (38%), Positives = 310/552 (56%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+ ++ G A+ DMA+ Y A P A+A NLGV+++ + LD+A ++
Sbjct: 35 AEMLWRAGNAHLAGGALDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRS 94
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 419
A+S +++++ NNLG + QG P +A AY+NLG R G +
Sbjct: 95 AISFNRDYAKAYNNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLD 154
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
+ A+ I+P + L+ ++Y ++ D+ LF H WG++ + +
Sbjct: 155 ETLAAFRTAHAINPHDPVFHSDLLMMLHY-SDMDDETLFREHVRWGEQHAPAAASVPTHQ 213
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREK 539
+DP R L IGYVS D+ H V YF+ L HD + + R K
Sbjct: 214 CDRDPGRKLRIGYVSGDFGKHPVGYFLLPFLENHDRSQFEICCYSERGQRQEDDVTARIK 273
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
+WR G+ + VA M+R D IDILV+L GHTA+N+L + A +PAPVQVTW+GY
Sbjct: 274 --GHADLWRRTIGLGDAAVAEMIRADGIDILVDLAGHTAHNRLRVFALKPAPVQVTWLGY 331
Query: 600 PNTTGLPTIDYRITDSLADPPETKQK-HVEELIRLPECFLCYTPSPEAGPVCPTPALTNG 658
PNTTGL +DYRITD++ADPP + H E+LIRL + FLCYTP A PV P L
Sbjct: 332 PNTTGLRAMDYRITDAVADPPGSADALHTEQLIRLEQGFLCYTPPAGAPPVGEAPCLAGA 391
Query: 659 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 718
+TFGSFNNLAK++P+V+ W+ IL VP SRL++K K F ++ R R G+
Sbjct: 392 GVTFGSFNNLAKVSPQVIDAWSAILGRVPGSRLMLKFKGFADETCRRRVSDAFGARGVSP 451
Query: 719 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 778
R++L+ + +DH+ Y+ +D++LDTFPY GT TTC++L+MGVP +T G+ H VG
Sbjct: 452 DRLELVSFVENFNDHLALYNRLDLALDTFPYNGTATTCDALWMGVPVLTCCGTRHVARVG 511
Query: 779 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838
S+LT +GL LI + +EY+ A LA+D LA LR +R ++ SP+CD FA +
Sbjct: 512 ASILTSLGLPELITHSPEEYISAAAALAADPARLAALRRDMRPRLAASPLCDPTGFARRM 571
Query: 839 ESTYRNMWHRYC 850
E+ R++W R+C
Sbjct: 572 ETALRDIWRRWC 583
|
|
| UNIPROTKB|Q608I2 MCA1509 "TPR domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 206/644 (31%), Positives = 315/644 (48%)
Query: 219 LER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
LER P A GV+ +G A+A + L +PN + N LG
Sbjct: 44 LERKPNDANILHLAGVVALRKGQNSRAVALISKALEYAPNESLYYFN-------LGNAYL 96
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAE- 335
+G I+ G+ + A + +A NLG+A E + A+ +E +P H A+
Sbjct: 97 ADGAIDLGIQALQDATRLDPERMEAWMNLGLALVEAKRHPEAVAAFERLLEIDPDHEADV 156
Query: 336 ----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--GXXXXXXX 389
A G++ K+ +D+ + + L + + + + + ++
Sbjct: 157 AFASALVGAGIMLKESAMVDRGISVLESKL--RDGYERYAAGVILARALEHRNRLSEAIR 214
Query: 390 XXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449
NP + NNL G + A Y C+K PD +A L +NY
Sbjct: 215 QHQALLEANPEHIGIRNNLARCLVQLGRVEEARTHYRLCVKSAPDKYHAFSALLAGLNY- 273
Query: 450 NEGHDDKLFEAH-RDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSY-FI 506
+ EA R+W K+ + Y + N +DPERPL IGY+SPD H V + F+
Sbjct: 274 EPNLTAAMHEAEVRNWEKQLALPHYPVEPEFPNERDPERPLKIGYLSPDLRQHVVGHNFL 333
Query: 507 EAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDK 566
P++ H + R ++ WR ++G + +VAA++RED+
Sbjct: 334 --PVLEHRNREQFSVFCYHIGEKQDDMSR---RIAALADHWRHVHGASDDEVAALIREDR 388
Query: 567 IDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH 626
+DILV+L+GHT++ + + A +PAPVQV+W+GY +TTGL T+D+ ITD + PP+ KQ
Sbjct: 389 VDILVDLSGHTSHTQPLVFARKPAPVQVSWLGYFDTTGLATMDWFITDPYSSPPDQKQYF 448
Query: 627 VEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAV 686
E L R+P L Y P P+ V PA NG+ITFG NNLAKI +VL +WA+IL A
Sbjct: 449 SERLYRMPHTRLYYHPYPDMPAVGQLPAKRNGYITFGCLNNLAKINTEVLDLWAQILAAS 508
Query: 687 PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 746
P SRL+++ C RF + + GL+ R++L P L Q Y +DI+LD
Sbjct: 509 PTSRLLIQTVALCDRLNLERFRALCVERGLDPARLELRPATSLEK-FAQTYHQIDIALDP 567
Query: 747 FPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA 806
FP+ G T+ ++L+MGVP +T+ A +S+L +GL HLIA N+ +YV +AL+L+
Sbjct: 568 FPFCGGFTSFDALWMGVPVITLEQQRLAGRQTLSMLMNLGLPHLIASNKTDYVSIALELS 627
Query: 807 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 850
D + + LR LR +SP+ D F LE YR W +C
Sbjct: 628 RDSSEIEQLRSELRSRFLQSPLIDHCRFTRELEKAYRFFWSHWC 671
|
|
| TAIR|locus:2103025 SEC "secret agent" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 108/377 (28%), Positives = 177/377 (46%)
Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIW 547
L IGYVS D+ H +S+ + + H+ +N +R+++ + +
Sbjct: 592 LRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNT---EWRQRIQSEAEHF 648
Query: 548 RDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPT 607
D+ + +A ++ +DKI IL+ L G+T + + A QPAP+QV+++G+P TTG
Sbjct: 649 LDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATY 708
Query: 608 IDYRITDSLADPPETKQKHVEELIRLPECFLC--YTPS------PEAGPVCPTPALTNGF 659
IDY +TD P + + E+L+ LP C+ Y P + P L
Sbjct: 709 IDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDK 768
Query: 660 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 719
F FN L K+ P+++ W IL VPNS L + P +R R + + G++
Sbjct: 769 FIFACFNQLYKMDPEIVNTWCNILKRVPNSALWLLRFP-AAGEMRFRTYAAAQ--GVQPD 825
Query: 720 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 779
++ + + + +H++ L D+ LDT G TT + L+ GVP +T+ A V
Sbjct: 826 QI-IFTDVAMKSEHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAG 884
Query: 780 SLLTKVGLKH-LIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838
SL GL H +I + +EY + A+ LA + L L LR P+ D + L
Sbjct: 885 SLCLATGLGHGMIVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNL 944
Query: 839 ESTYRNMWHRYCKGDVP 855
E +Y MW+ +C G P
Sbjct: 945 ERSYFKMWNLHCSGQQP 961
|
|
| WB|WBGene00003858 ogt-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 113/416 (27%), Positives = 191/416 (45%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + + DAL Y++ ++ ++A+I L A ++ A++++P
Sbjct: 201 NYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDL 260
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 261 YCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQF-------AVAWSNLGCVFNSQGEIWL 313
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A +A + N+ +Y
Sbjct: 314 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLACVY 373
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y++ + + P+F A N+A AL + G+ V+ E Y KAL
Sbjct: 374 YEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAE-------QMYMKALEL 426
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD+ NL E K + A Y A P A A +NL I + + L+ A+
Sbjct: 427 CPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAIL 486
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G G NP +A+A++NL +++DA
Sbjct: 487 HYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDA 546
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 471
G+++ AI +Y LK+ PD +A Y N H ++ D+ KR +L
Sbjct: 547 GNMAEAIQSYSTALKLKPDFPDA---------YCNLAHCHQIICDWNDYDKRVRKL 593
|
|
| UNIPROTKB|O18158 ogt-1 "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 113/416 (27%), Positives = 191/416 (45%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + + DAL Y++ ++ ++A+I L A ++ A++++P
Sbjct: 201 NYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDL 260
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 261 YCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQF-------AVAWSNLGCVFNSQGEIWL 313
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A +A + N+ +Y
Sbjct: 314 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLACVY 373
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y++ + + P+F A N+A AL + G+ V+ E Y KAL
Sbjct: 374 YEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAE-------QMYMKALEL 426
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD+ NL E K + A Y A P A A +NL I + + L+ A+
Sbjct: 427 CPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAIL 486
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G G NP +A+A++NL +++DA
Sbjct: 487 HYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDA 546
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 471
G+++ AI +Y LK+ PD +A Y N H ++ D+ KR +L
Sbjct: 547 GNMAEAIQSYSTALKLKPDFPDA---------YCNLAHCHQIICDWNDYDKRVRKL 593
|
|
| UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 148/562 (26%), Positives = 258/562 (45%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 157 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 216
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 217 A-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 269
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 270 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA----- 324
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 325 ---NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 381
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 382 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 441
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 442 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 495
Query: 447 N------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYVSPD 496
+ Y ++ G + E H + + + + +++ KD + L +GYVS D
Sbjct: 496 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYVSSD 554
Query: 497 YFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-E 555
+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 555 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCN 611
Query: 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDS 615
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY ITD
Sbjct: 612 GKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQ 671
Query: 616 LADPPETKQKHVEELIRLPECF 637
P E +++ E+L +P F
Sbjct: 672 ETSPAEVAEQYSEKLAYMPHTF 693
|
|
| UNIPROTKB|F1RSV2 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 148/562 (26%), Positives = 258/562 (45%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 167 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 226
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 227 A-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 279
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 280 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA----- 334
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 335 ---NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 391
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 451
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 452 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 505
Query: 447 N------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYVSPD 496
+ Y ++ G + E H + + + + +++ KD + L +GYVS D
Sbjct: 506 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYVSSD 564
Query: 497 YFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-E 555
+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 565 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCN 621
Query: 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDS 615
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY ITD
Sbjct: 622 GKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQ 681
Query: 616 LADPPETKQKHVEELIRLPECF 637
P E +++ E+L +P F
Sbjct: 682 ETSPAEVAEQYSEKLAYMPHTF 703
|
|
| UNIPROTKB|P81436 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 148/562 (26%), Positives = 258/562 (45%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 167 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 226
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 227 A-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 279
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 280 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA----- 334
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 335 ---NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 391
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 451
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 452 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 505
Query: 447 N------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYVSPD 496
+ Y ++ G + E H + + + + +++ KD + L +GYVS D
Sbjct: 506 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYVSSD 564
Query: 497 YFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-E 555
+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 565 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCN 621
Query: 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDS 615
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY ITD
Sbjct: 622 GKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQ 681
Query: 616 LADPPETKQKHVEELIRLPECF 637
P E +++ E+L +P F
Sbjct: 682 ETSPAEVAEQYSEKLAYMPHTF 703
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O82422 | SPY_HORVU | 2, ., 4, ., 1, ., - | 0.8404 | 0.8914 | 0.8697 | N/A | no |
| O82039 | SPY_PETHY | 2, ., 4, ., 1, ., - | 0.8381 | 0.9945 | 0.9828 | N/A | no |
| Q8LP10 | SPY_EUSER | 2, ., 4, ., 1, ., - | 0.7967 | 0.9467 | 0.9498 | N/A | no |
| Q96301 | SPY_ARATH | 2, ., 4, ., 1, ., - | 0.8374 | 0.9652 | 0.9726 | yes | no |
| Q6YZI0 | SPY_ORYSJ | 2, ., 4, ., 1, ., - | 0.8064 | 0.9218 | 0.9158 | yes | no |
| Q8RVB2 | SPY_SOLLC | 2, ., 4, ., 1, ., - | 0.8228 | 0.9967 | 0.9860 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 921 | |||
| COG3914 | 620 | COG3914, Spy, Predicted O-linked N-acetylglucosami | 4e-94 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 1e-23 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-23 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-23 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-22 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-21 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-21 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 2e-20 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-18 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-18 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-17 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-16 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-14 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-14 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-14 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-11 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-10 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 2e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-10 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-10 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-09 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-09 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 7e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-08 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-07 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 2e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-07 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-07 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-07 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-07 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 9e-07 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-06 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 2e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 4e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-06 | |
| PRK12370 | 553 | PRK12370, PRK12370, invasion protein regulator; Pr | 5e-06 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 9e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 1e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-05 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 1e-05 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 1e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 2e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 3e-05 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 3e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-05 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 8e-05 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 8e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 9e-05 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 9e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 1e-04 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 1e-04 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 2e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-04 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-04 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 2e-04 | |
| PRK11189 | 296 | PRK11189, PRK11189, lipoprotein NlpI; Provisional | 2e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 3e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 3e-04 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 3e-04 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 4e-04 | |
| pfam10373 | 276 | pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding dom | 4e-04 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 5e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 5e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.001 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 0.001 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.001 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 0.001 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.002 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.004 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.004 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.004 |
| >gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 309 bits (793), Expect = 4e-94
Identities = 166/562 (29%), Positives = 248/562 (44%), Gaps = 56/562 (9%)
Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLG 375
+A + + NP A NL + A+ ++A + P+ ++ L +L
Sbjct: 84 TLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143
Query: 376 VVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL--------- 420
Y + G+ A +E+A+ P Y L ++ S
Sbjct: 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQ 203
Query: 421 ------AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 474
L DP A N+LL + N +
Sbjct: 204 LALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAPELVR------------------ 245
Query: 475 YTSWDNTKDPE-RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAK 532
+ D + L +GY+S D +H+V + + YHD ++V YS DA
Sbjct: 246 FPIRDENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDAL 305
Query: 533 TIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 592
R V K W I +D+ ++A +R D IDILV+L GHT + + + A +PAP+
Sbjct: 306 QERISAAVEK----WYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPI 361
Query: 593 QVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT 652
QV+W+GYP TTG P +DY I+D PP ++ + E+L RLP CY P PV P
Sbjct: 362 QVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLP---QCYQPVDGFEPVTPP 418
Query: 653 PA-----LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 707
P+ L + F FNN KITP+V +W +IL AVPNS L++K + R
Sbjct: 419 PSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARL 477
Query: 708 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVT 767
E+ G++S R+ LP N DH Y + D+ LDT+PY G TT ++L+MGVP +T
Sbjct: 478 RDLAEREGVDSERLRFLP-PAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLT 536
Query: 768 MAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSP 827
G A G S+ T G+ L+A + +YV+ A+ SD +R L+ SP
Sbjct: 537 RVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSP 596
Query: 828 VCDGQNFALGLESTYRNMWHRY 849
+ D + FA LE+ Y MW Y
Sbjct: 597 LFDPKAFARKLETLYWGMWSEY 618
|
Length = 620 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 4/187 (2%)
Query: 660 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 719
I + +FN L KI P LQ+W IL VPNS L + P ++ + ++GL
Sbjct: 286 IVYCNFNQLYKIDPSTLQMWVNILKRVPNSVLWLLRFPAVGEANIQAYAQ---EMGLPPR 342
Query: 720 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 779
R+ + + +H++ L D+ LDT G TT + L+ G P VTM A V
Sbjct: 343 RI-VFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPLETLASRVAA 401
Query: 780 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 839
S LT +G LIAK+ EY +A++L +D L +R + + S + + + + LE
Sbjct: 402 SQLTTLGCPELIAKDRQEYEDIAVKLGTDREYLRKIRAKVWKARTSSTLFNTKQYCQDLE 461
Query: 840 STYRNMW 846
Y MW
Sbjct: 462 RLYLKMW 468
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-23
Identities = 104/418 (24%), Positives = 160/418 (38%), Gaps = 50/418 (11%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L A + + N+F +A AL + VL D GNV+A + KG L LA ++ +A+ L
Sbjct: 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL-AIVLTDLGTSLKLA 170
P N + + G E AE + AL P A L A+V +
Sbjct: 223 RPNNIAVLLALATILIEAGE-FEEAEKHADALLKKAPNSPLAHYLKALV------DFQ-K 274
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA---LGCYEKAA----LERPM 223
N +D + +ALK P Y PA G +L + A L K A R +
Sbjct: 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334
Query: 224 YAEAYCNM---------------------------GVIYKNRGDLESAIACYERCLAVSP 256
A + G Y GD E A + + P
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394
Query: 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316
E A + ++ L GD ++ +A + A + A L ++Y +F
Sbjct: 395 --ENAAARTQLGISKLSQ-----GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF 447
Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376
D A+ + P A N LG IY + +L KA E ++ ALSI+P+F + NL
Sbjct: 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507
Query: 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+ +G D A + EK + +P A L LY G+ A+ E+ +++P
Sbjct: 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 6e-23
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394
EA NLG +Y + D+A+E Y+ AL + P+ + + NL Y GK + A E EKA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+ +P A+AY NLG+ Y G A++AYE+ L++DP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.8 bits (244), Expect = 1e-22
Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 13/283 (4%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGV-VYSELMQYDTALGCYEKAALERP--MYAEAYCNMGV 233
+ EAL A A G+ + L + AL E+A P A + +
Sbjct: 8 LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLAL 67
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
G LE A+ E+ L + N+A AL +LG ++ G + + +KAL
Sbjct: 68 ALLKLGRLEEALELLEKALEL-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 294 -YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDN 349
A E+ ++ A+ YE A +P AEA LG + +
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 350 LDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
++A+E + AL + P+ +++L NLG++Y GK + A E EKA+ +P AEA NL
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 451
+L + G A++A E+ L++DPD N G LL + E
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALE 285
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-21
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L +LG G+ + ++ Y +AL++DP A AYYNL Y +L +Y+ AL YEKA
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
P A+AY N+G+ Y G E A+ YE+ L + PN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 9e-21
Identities = 104/440 (23%), Positives = 148/440 (33%), Gaps = 83/440 (18%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-------- 114
F A E D N A GI Q A A +LDP+
Sbjct: 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437
Query: 115 --------------------------NACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
NA H G +Y +G L +A E++ KALS +P
Sbjct: 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
+ PAA LA + D+ GN D IQ++ + L IDP A L +Y +
Sbjct: 498 FFPAAANLARI--DIQE-----GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
A+ EKAA P E + Y +G L+ A+A +P + A
Sbjct: 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-----DSPEAWL 605
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+ LG GD+N+ V+ +KK L A A+ L AY M + AI + A
Sbjct: 606 M--LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663
Query: 329 FNPHCAEACNNLGVIYKDRDNLD----------------------------------KAV 354
P EA L + + A+
Sbjct: 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ Y+ AL P+ SQ+ L G A + +E + +P A L LY
Sbjct: 724 QAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA 782
Query: 415 AGSISLAIDAYEQCLKIDPD 434
AI Y+ +K PD
Sbjct: 783 QKDYDKAIKHYQTVVKKAPD 802
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 2e-20
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 547
L IGYVS D+ H S+ +++ H+ +V Y+ + D T FR KVM + +
Sbjct: 1 LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYA--LSPDDGT-NFRSKVMAESEHF 57
Query: 548 RDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP 606
D+ I K A + +D I ILV + G+T + + A +PAP+QV W+GYP T+G
Sbjct: 58 VDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGAT 117
Query: 607 TIDYRITDSLADPPETKQKHVEELIRLPECF 637
+DY ITDS+ P E ++ E+L +P F
Sbjct: 118 FMDYIITDSVTSPMELADQYSEKLAYMPHTF 148
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 5e-20
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
AL +LG GD ++ + YY+KAL + ADA YNL AY ++ K++ A+ YE A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
+P A+A NLG+ Y ++A+E Y+ AL + PN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 7e-20
Identities = 96/415 (23%), Positives = 150/415 (36%), Gaps = 20/415 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDP 113
A IL +F +A + +L+K + AH K + Q +N A ++ +A+K P
Sbjct: 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED-ARETLQDALKSAP 292
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ A G G L +A + ++ L P+ A LA + L+L G
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ------LRL-GRV 345
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ I AL +DP A LG Y L ++ A KA P A A +G+
Sbjct: 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK-KA 292
++GD AIA E + P A + ++ G K + A
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
+N LG Y A +E A P A NL I N D
Sbjct: 466 SLHNL--------LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
A++ ++ L+I P +++ L +Y G + A +EKA NP E L Y
Sbjct: 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 467
G + A+ + PDS A +L + G +K + +
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWL--MLGRAQLAAGDLNKAVSSFKKLLAL 630
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-18
Identities = 91/345 (26%), Positives = 142/345 (41%), Gaps = 18/345 (5%)
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
S A+ LDP + A + G Y G +AAE KA DP A T LG
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-------NAAARTQLGI 405
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
S G+ + I A ++DP A L + Y Q+D AL +K ++P A
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVKLEGDINQ 284
+ +G IY +GDL A +E+ L++ P+F A N+A I + EG+ +
Sbjct: 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ--------EGNPDD 517
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ ++K L + A+ L Y + A+ + E A NP E L Y
Sbjct: 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404
+ L KA+ A P+ ++ LG G ++ A +K +A P A A
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637
Query: 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA--GQNRLLAMN 447
L Y + + AI + ++ L++ PD+ A G +LL
Sbjct: 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 3e-18
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
+A+ NLG Y ++ +D A+ +YE A +P A+A NL Y ++A+E Y+ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
L + P+ +++ NLG+ Y GK + A E EKA+ +P
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 7e-17
Identities = 80/379 (21%), Positives = 140/379 (36%), Gaps = 16/379 (4%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L+ A + +A+A E E + +E + + + A +EA
Sbjct: 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
P + A G G L +A S+ K L+ P A ++L D +K
Sbjct: 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALAL---LLLADAYAVMK--- 649
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
N I AL++ P A L + + ++A + + P A +
Sbjct: 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
G +Y + D +AI Y + L +P+ + A L + G+ + V +
Sbjct: 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK--------LHRALLASGNTAEAVKTLEA 761
Query: 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351
L + + A L Y +D AI Y+ P A NNL +Y + +
Sbjct: 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-P 820
Query: 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411
+A+E + AL + PN L+ LG + +G+ D A ++ KA+ P A +L +
Sbjct: 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880
Query: 412 YRDAGSISLAIDAYEQCLK 430
G + A ++ L
Sbjct: 881 LLATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 4e-16
Identities = 32/99 (32%), Positives = 45/99 (45%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
A NLG +Y +L YD AL YEKA P A+AY N+ Y G E A+ YE+ L
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ P+ A N+ +A LG + + +
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G LY G EA E Y KAL DP A +L + G ++ ++ Y +
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDPDN-------ADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
AL++DP A AYYNLG+ Y +L +Y+ AL YEKA
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A L + Y E ++A + A +P A L + Y+ L+KA + ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGS 417
AL++ PN LNN G QGK + A + E+AI P A + N G+ AG
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454
A + L+IDP + LA Y G
Sbjct: 151 FDKAEKYLTRALQIDPQRPES--LLELAELYYLRGQY 185
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-14
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+ L+ N+ + +AL YE LE D N +A+ A + + +A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
++LDP NA A+ + G+ Y G+ EA E+Y KAL DP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-14
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
++L NLG +Y G D A E EKA+ +P A+AY NL Y G A++ YE+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 429 LKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460
L++DPD+ A L + Y G ++ EA
Sbjct: 61 LELDPDNAKA--YYNLGLAYYKLGKYEEALEA 90
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-14
Identities = 102/440 (23%), Positives = 161/440 (36%), Gaps = 57/440 (12%)
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
E I +N + A A++ DP +A A G +Y G A + K
Sbjct: 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81
Query: 142 ALSADPS----------------------------YKPAAECLAIVLTDLGTSLKLAGNT 173
ALS E A +L G + G
Sbjct: 82 ALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ + Y +AL IDP A L + ++D A ++ P +A G
Sbjct: 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201
Query: 234 IYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDL-GTKVKLEGDI----NQG 285
+ + G++E A+A Y + +A+ PN +A + I + + + + N
Sbjct: 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261
Query: 286 VAYYKKAL--YYNWHYADAMYNLGVA------YGEMLKFDMAIVFY----ELAF-HFN-- 330
+A+Y KAL + +Y DA L A Y L A + E A+ + N
Sbjct: 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQI 321
Query: 331 ----PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P+ +A L I +D+A+ AL + P+ +L+ LG Y G +
Sbjct: 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
AAE + KA +P A A LG+ G S AI E ++DP+ A LL +
Sbjct: 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD--LLLIL 439
Query: 447 NYINEGHDDKLFEAHRDWGK 466
+Y+ G DK A + K
Sbjct: 440 SYLRSGQFDKALAAAKKLEK 459
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 27/251 (10%)
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMA 266
C +++ E + A Y + ++AI + L PN F + K +A
Sbjct: 16 ACGDQSPEE--LIEAA-----KSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLA 68
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYEL 325
GD +KAL + + L AY KF +
Sbjct: 69 ------------LGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGK 116
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
+ AE G+ Y L+ A + Y+ AL+I P + L + + + D
Sbjct: 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD 176
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A +I++ + A+P +A G L G+I LA+ AY + + + P++
Sbjct: 177 EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236
Query: 446 MNYINEGHDDK 456
+ I G ++
Sbjct: 237 L--IEAGEFEE 245
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-11
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYE 426
+++L NLG G D A E EKA+ +P AEAY NL + Y G A++ E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 427 QCLKIDP 433
+ L++DP
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIAC 247
A A NLG +L YD A+ YEKA P AEAY N+ + Y G D E A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 248 YERCLAVSP 256
E+ L + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-11
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIE 392
AEA NLG + D+A+E Y+ AL + P+ +++ NL + Y GK + A E +E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 393 KAIAANP 399
KA+ +P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL-------ERPMYAEAYCNMGVIYKNRG 239
P A A NL +V L YD AL EKA + P A A N+ +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 240 DLESAIACYERCLAVSPN 257
D + A+ E+ LA+
Sbjct: 61 DYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A A L + Y + + A E A +P A Y+ D A E Y+
Sbjct: 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAG 416
ALS+ PN LNN G QG+ + A + E+A+A P Y ++ NLG+ AG
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAG 153
Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
A + ++ L++DP LA + G
Sbjct: 154 QFDQAEEYLKRALELDPQ--FPPALLELARLHYKAG 187
|
Length = 250 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+A ++ +A++ DP + A+ + Y+ G L +A +S+ +AL+ +P+
Sbjct: 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-------GD 100
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYE 215
VL + GT L G + +Q++ +A++ DP Y A + N G+ + +D A
Sbjct: 101 VLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+A P E+ + +Y RG + A A ER
Sbjct: 160 RALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-10
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGS 417
P+ + +LNNL +V G D A E++EKA+ +P A A NNL LY G
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 418 ISLAIDAYEQCLKIDPD 434
A++ E+ L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
S A + L G+ + + +AL+ DP AY L + Y +L +
Sbjct: 21 SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+ A + +A P + N G +G E A+ +E+ + P + A
Sbjct: 81 LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYP----QPA 135
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
+L + G GD ++ Y +AL + +++ L
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (142), Expect = 2e-09
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 13/213 (6%)
Query: 38 AVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQ 95
A+ L + L+ +L + K+ +AL L E L D EA + G ++
Sbjct: 85 ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144
Query: 96 NMGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152
+ A + + +A++LDP + A A G L + GR EA E KAL +P
Sbjct: 145 DY-EEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203
Query: 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212
A L +LG G ++ ++ Y +AL++DP A A YNL ++ EL +Y+ AL
Sbjct: 204 A------LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257
Query: 213 CYEKA-ALERPMYAEAYCNMGVIYKNRGDLESA 244
EKA L+ +Y + ++ + LE A
Sbjct: 258 ALEKALELDPDLYNLGLALLLLLAEALELLEKA 290
|
Length = 291 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 42/206 (20%), Positives = 75/206 (36%), Gaps = 45/206 (21%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A+ + + Y +GDLE A ++ L P+ +A +A+ LG ++ +
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-------ELEK 83
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+++AL N + D + N G + K++ A+ +E A
Sbjct: 84 AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA-----------------I 126
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
+D P + Q SL N G+ G D A + + +A+ +P
Sbjct: 127 ED------------------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQ 427
E+ L LY G A E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQG 382
+P A A NNL ++ + + D+A+E + AL + P +++LNNL +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 383 KMDAAAEMIEKAIAANP 399
D A E +EKA+A
Sbjct: 61 DYDEALEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
+ LE D + A++ + Q A DSF A+ L+P N + G +G+
Sbjct: 55 DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114
Query: 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY-EALKIDPHY 190
+A + + +A+ DP Y A L + G AG+ D +KY AL+IDP
Sbjct: 115 YEQAMQQFEQAIE-DPLY----PQPARSLENAGLCALKAGDF-DKAEKYLTRALQIDPQR 168
Query: 191 APAYYNLGVVYSELMQYDTALGCYEK 216
+ L +Y QY A E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 7e-09
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYC--NMGVIYKNRGDLESAIAC 247
A YY G+ +Y AL YE+A LE +Y NMG+IY + G+ + A+
Sbjct: 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY 94
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
Y + L ++P A NN+A+ G K + GD ++ A + KA Y W A +
Sbjct: 95 YHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY-WKQAIRLA 150
|
Length = 172 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 12/161 (7%)
Query: 110 KLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168
D A + Y ++G L A E+ KAL DP A LA+ L
Sbjct: 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL----- 78
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---A 225
G + + AL ++P+ N G + +Y+ A+ +E+ A+E P+Y A
Sbjct: 79 --GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ-AIEDPLYPQPA 135
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+ N G+ GD + A R L + P + +A
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
EA + G A + + +A++LDP NA A+ + Y G+ EA E Y KA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
L DP A +LG + G ++ ++ Y +AL++DP+
Sbjct: 61 LELDPDN-------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-08
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AEA N+G GD + AI YE+ L + P+ A N+A+A LG + +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYE------E 56
Query: 285 GVAYYKKAL 293
+ +KAL
Sbjct: 57 ALEDLEKAL 65
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDNLDKAVEC 356
A+A+ NLG A ++ +D AI YE A +P AEA NL + Y K + ++A+E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 357 YQMALSIKP 365
+ AL + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 13/185 (7%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A L + Y E + A +KA P AY + + Y+ G+LE A + R
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA----LYYNWHYADAMYNL 306
L ++PN NN GT + +G Q + +++A LY A ++ N
Sbjct: 91 ALTLNPNNGDVLNN-------YGTFLCQQGKYEQAMQQFEQAIEDPLYP--QPARSLENA 141
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+ + FD A + A +P E+ L +Y R A +
Sbjct: 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
Query: 367 FSQSL 371
++SL
Sbjct: 202 TAESL 206
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCY 214
A L +LG +L G+ + I+ Y +AL++DP A AYYNL + Y +L Y+ AL
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 215 EKA 217
EKA
Sbjct: 62 EKA 64
|
Length = 69 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 41/144 (28%)
Query: 287 AYYKKAL--YYNWHYADAMYNLGVAYGEMLK-----FDMAIVFYELAFHFNPHCAEACNN 339
YY+ + + YA+A+ N Y E LK D + + Y N
Sbjct: 37 VYYRDGMSAQADGEYAEALEN----YEEALKLEEDPNDRSYILY---------------N 77
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM--------------D 385
+G+IY DKA+E Y AL + P +LNN+ V+Y +G+ D
Sbjct: 78 MGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFD 137
Query: 386 AAAEMIEKAIAANP-TYAEAYNNL 408
AAE ++AI P Y EA N L
Sbjct: 138 KAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-07
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
P A A N+ ++ + GD + A+ E+ L ++ A AL +L G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 281 DINQGVAYYKKAL 293
D ++ + Y +KAL
Sbjct: 61 DYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
A+A NLG Y D+A+E Y+ AL + PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
A+A N+G Y G + A+ YE+ L ++PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
LQ + A + +A++ DP AH Y+ G A ESY KALS P+
Sbjct: 46 LQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-- 102
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYD 208
VL + G L G ++ +Q++ AL DP Y + NLG+ + Q+D
Sbjct: 103 -----GDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFD 156
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A ++A P + A + ++ GD A ER
Sbjct: 157 QAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-07
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYD 208
LA L +L L+ G+ + ++ +AL++ P A A NL +Y L YD
Sbjct: 4 LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63
Query: 209 TALGCYEKA 217
AL EKA
Sbjct: 64 EALEYLEKA 72
|
Length = 78 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--------------M 384
N+G+I+ KA+E Y AL P Q+LNN+ V+ +G+
Sbjct: 77 NIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136
Query: 385 DAAAEMIEKAIAANPT-YAEAYNNL 408
D AAE ++AIA P Y EA N L
Sbjct: 137 DQAAEYWKQAIALAPGNYIEAQNWL 161
|
Length = 168 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
AEA N+G Y GD + A+ YE+ L + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
AEA NLG Y + D+A+E Y+ AL + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
G D A +E A+A P AEA LG G ++ A L DPD
Sbjct: 10 AGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64
|
Length = 65 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
L G+ + +AL+ DP Y A+ Y +L + D A Y KA
Sbjct: 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL 98
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
P + N G +G E A+ +ER LA P + + L +LG G
Sbjct: 99 APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY----GEPSDTLENLGLCALKAG 153
Query: 281 DINQGVAYYKKALYYN 296
+Q Y K+AL +
Sbjct: 154 QFDQAEEYLKRALELD 169
|
Length = 250 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
A+A NLG Y G A++ YE+ L+++P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-06
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 331 PHCAEACNNLGV----IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P+CA A L + I+ ++ + KA E A + N Q+L LG++ T+ +
Sbjct: 297 PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
+ + ++A +P A+ G AG + A+ +CLK+DP AG +L +
Sbjct: 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-I 415
Query: 447 NYINEGHDDKLFEAHRDWGKRFMRLYSQYT 476
Y + G DD + L SQ+
Sbjct: 416 TYYHTGIDDAIRLG--------DELRSQHL 437
|
Length = 553 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 5/178 (2%)
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+ L T + L GD + +A +K+ + + G F A+ A
Sbjct: 69 IAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128
Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
P EA N LG D+A Y+ AL + PN NNLG+ ++G ++ A
Sbjct: 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
++ A + + NL ++ G A D Q N + A+
Sbjct: 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ-----ELLSEQAANNVAAL 241
|
Length = 257 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
AEA NLG Y G A++ YE+ L++DP+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 27/130 (20%), Positives = 47/130 (36%)
Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199
+L+ A +L G + GN + + +A ++ P A+ LG
Sbjct: 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142
Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
+L ++D A Y +A P N+G+ RGDLE A
Sbjct: 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202
Query: 260 IAKNNMAIAL 269
+ N+A+ +
Sbjct: 203 RVRQNLALVV 212
|
Length = 257 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 59/301 (19%), Positives = 110/301 (36%), Gaps = 52/301 (17%)
Query: 101 AFDSFSEAV---KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
A +F +A+ KL + A A G +G+ +EA K++ DP + A
Sbjct: 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRA 372
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
+ +LG D ++ ++ ALK++ YY+ ++ ++ A Y+K
Sbjct: 373 SMNLELGDP--------DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
+ P + ++ +GV G + S++A + RC P N L D
Sbjct: 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-- 482
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--- 333
+ +A+ KFD AI EL P
Sbjct: 483 ------------FDEAIE--------------------KFDTAI---ELEKETKPMYMNV 507
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
N +++ + + +A + AL I P ++ + + QG +D A ++ E+
Sbjct: 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567
Query: 394 A 394
A
Sbjct: 568 A 568
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
GV+Y G A +A+A P E +N LG+ AG+ A +A++ L++DP
Sbjct: 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131
Query: 435 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 488
A NR +A+ Y G KL A D + Y D+ DP R L
Sbjct: 132 YNYAHLNRGIALYY---GGRYKL--AQDD----LLAFYQ-----DDPNDPFRSL 171
|
Length = 297 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 19/180 (10%)
Query: 190 YAPAYYNLGVVYSELM----QYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDL 241
A A LG +Y A Y AA + AEA N+G++Y N DL
Sbjct: 72 DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GLAEALFNLGLMYANGRGVPLDL 129
Query: 242 ESAIACYER-CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
A+ YE+ + +A + +A + + D + + Y+KA
Sbjct: 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187
Query: 301 DAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356
DA LG Y G A +Y+ A AC NLG++Y + + + KA
Sbjct: 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMYLNGEGVKKAAFL 245
|
Length = 292 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ Y +G +A ++ KAL DPSY A A LG LA + Y +
Sbjct: 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLAD------ESYRK 94
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRG 239
AL + P+ N G + + A+ +E+A L P Y ++ N+G+ G
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA-LADPAYGEPSDTLENLGLCALKAG 153
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ A +R L + P F A +A GD Y ++
Sbjct: 154 QFDQAEEYLKRALELDPQFPPALLELARLH-------YKAGDYAPARLYLER 198
|
Length = 250 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 23/181 (12%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
L L A + Q EA K A L + Y + Y A
Sbjct: 9 SLVFSLALGACVTDPAPSRQTDRN---EAAK-------ARLQLALGYLQQGDYAQAKKNL 58
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
EKA P Y A+ Y+ G+ + A Y + L+++PN NN G
Sbjct: 59 EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN-------YGA 111
Query: 275 KVKLEGDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+ +G + + +++AL Y +D + NLG+ + +FD A + + A +
Sbjct: 112 FLCAQGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 331 P 331
P
Sbjct: 170 P 170
|
Length = 250 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
A AY +G IY GD E A YE+ L + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDK 352
A A+ NL + + +D A+ E A +P A A NNL +Y + D+
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 353 AVECYQMALSIKPN 366
A+E + AL+++
Sbjct: 65 ALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-05
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 322
+ A AL +LG + GD ++ + Y+KAL + A+A YNL +AY ++ K ++ A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 323 YELAFHFNP 331
E A +P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 8e-05
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
AEA N+G+ Y GD E A+ YE+ L + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
G +AAAE+ +A+ P +A + LG AG A AYE+ L++DP+
Sbjct: 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68
Query: 442 RLLAM 446
+L +
Sbjct: 69 KLAVL 73
|
Length = 287 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 9e-05
Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 38/310 (12%)
Query: 2 AWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVG--STLKGFEGKDALSYANILR 59
A +E E Q LK P+S S A L + + + A LR
Sbjct: 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLR 337
Query: 60 S-----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ K ++ALA +E D +++I + A + F +A+KL+ +
Sbjct: 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ + H L+ +G +A + Y K++ DP + LG + G+
Sbjct: 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIA 450
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM----QYDTALGCYEKA-ALER---PMYAE 226
+ + K P AP YN Y EL+ ++D A+ ++ A LE+ PMY
Sbjct: 451 SSMATFRRCKKNFPE-APDVYNY---YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506
Query: 227 AYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL-EGDI 282
+ +++ + D A E+ L + P +IA MA ++ L +GD+
Sbjct: 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA--------QLLLQQGDV 558
Query: 283 NQGVAYYKKA 292
++ + +++A
Sbjct: 559 DEALKLFERA 568
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 9e-05
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
Y +AL++DP+ A AYYNL ++ L QYD AL
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG-RLAFDSFSEAVKLDP 113
N L + +A+ YE LE D N EA+ + A + +A++LDP
Sbjct: 10 GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
L + D+A+ + AL+ P +++L LG QG++ AA ++ A+AA+P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 400 TYA 402
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
A AY LG +Y G A + YE+ L++DP++
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
L Y++ DKA+E Y+ L PN L L + GK A + +++ +A
Sbjct: 91 ALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARF 150
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH-DDKL 457
PT A Y L + R A A+ A++Q L ++PD+ A + + +L
Sbjct: 151 PTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAARL 210
Query: 458 FEAHRDW 464
+ + D
Sbjct: 211 AKQYPDL 217
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 352 KAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+A+E Y+ AL ++ + S L N+G++Y G+ D A E +A+ NP A NN+
Sbjct: 53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112
Query: 409 GVLYRDAGSIS--------------LAIDAYEQCLKIDPDSRNAGQNRL 443
V+Y G + A + ++Q +++ P++ QN L
Sbjct: 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
A A YNLG Y +L +YD AL YEKA
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKA 27
|
Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
E A L R +LA+ + + E +G A
Sbjct: 65 EDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR 124
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+A +L P + A G GR EA +Y +AL P E + +LG S
Sbjct: 125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-----NE--PSIANNLGMS 177
Query: 167 LKLAGNTQD 175
L L G+ +D
Sbjct: 178 LLLRGDLED 186
|
Length = 257 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 42/234 (17%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Q D A+ + + E P EA+ +G ++++RG+++ AI ++ L SP+ + +
Sbjct: 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLL 108
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A L LG Y A + A+ ++N V GE +
Sbjct: 109 A--LQQLGRD-------------YMAAGLLD--RAEDIFNQLVDEGEFAE---------- 141
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTV 380
A L IY+ +KA++ + + + +Q L
Sbjct: 142 ---------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+D A E+++KA+ A+ A LG + G A++A E+ L+ +P+
Sbjct: 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246
|
Length = 389 |
| >gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV-LYRDAGSI 418
AL+++P+ + + N LG+ T G DAA E + + +PTY AY N G+ LY G
Sbjct: 90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRY 148
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
LA D + DP+ R L + Y+ E D +A + +R+ +L + W
Sbjct: 149 ELAQDDLLAFYQDDPND----PYRALWL-YLAESKLDPK-QAKENLKQRYEKLDKEQWGW 202
Query: 479 D 479
+
Sbjct: 203 N 203
|
Length = 296 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
AEA NLG+ Y + ++A+E Y+ AL + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 3e-04
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
+ EKA+ +P AEAY NL +L + G A+
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 59/303 (19%), Positives = 90/303 (29%), Gaps = 80/303 (26%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A D F E ++ DP+ AH G L++ G V+ A H+ L P LA+
Sbjct: 54 AVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLLESPDLTFEQRLLAL-- 110
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
LG Y D A + + E
Sbjct: 111 ----------------------------------QQLGRDYMAAGLLDRAEDIFNQLVDE 136
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFEIAKNNMAIALTDLGTKVK 277
A + IY+ + E AI ER + + EIA+ +A L +
Sbjct: 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-- 194
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
D+++ A L A + C A
Sbjct: 195 ---DVDR-----------------ARELLKKALQA-----------------DKKCVRAS 217
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
LG + + + KAVE + L P + S+ L L Y GK + +A+
Sbjct: 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277
Query: 397 ANP 399
N
Sbjct: 278 TNT 280
|
Length = 389 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
AL Y + + A E LE D AH+ + Q LA +S+ +A+
Sbjct: 42 ALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
L P N + G +GR EA + + +AL ADP+Y + L +LG A
Sbjct: 98 LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL-ADPAYGEP----SDTLENLGLCALKA 152
Query: 171 GNTQDGIQKYYE-ALKIDPHYAPA 193
G D ++Y + AL++DP + PA
Sbjct: 153 GQF-DQAEEYLKRALELDPQFPPA 175
|
Length = 250 |
| >gnl|CDD|220721 pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding domain | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
AL Y A+L P E Y +GVI G+ A+ Y R LAV F AKNN+ +
Sbjct: 1 ALRYYLLASLLLPSSGEPYNQLGVIALYVGNHLDAVYYYLRSLAVRNPFPTAKNNLELLF 60
Query: 270 TD 271
Sbjct: 61 EK 62
|
Est1 is a protein which recruits or activates telomerase at the site of polymerisation. This is the DNA/RNA binding domain of EST1. Length = 276 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G
Sbjct: 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE-GHDDKLFEAHRDWGKRFMRLYSQYTSW 478
LA D + DP+ R L + Y+NE D K +A + +R + + W
Sbjct: 151 LAQDDLLAFYQDDPND----PFRSLWL-YLNEQKLDPK--QAKTNLKQRAEKSDKEQWGW 203
|
Length = 297 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 5e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
AEA NLG+ Y G A++AYE+ L++DP+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 6e-04
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG-RLVEAAESY 139
N EA G L A +++ +A++LDP NA A+ + + Y G EA E
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 140 HKALSADP 147
KAL DP
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 6e-04
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
AEA NLG G AI+AYE+ L++DPD+ A N A+ Y+ G D +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL--ALAYLKLGKDYE 55
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 13/66 (19%), Positives = 23/66 (34%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
++ + G EA E KAL A L +L G+ + ++ +
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71
Query: 183 ALKIDP 188
AL +
Sbjct: 72 ALALRE 77
|
Length = 78 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPMYAEAYC--NMGVIYKNRGDLESAIAC 247
A YY G+ +Y AL Y +A LE Y +Y N+G+I+ + G+ A+
Sbjct: 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
Y + L +P A NNMA+ G + +GD A++ +A Y W A
Sbjct: 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY-WKQA 146
|
Length = 168 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
A A LG IY + ++A E Y+ AL + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
G+ A +++A+ ANP +EA LG Y G + A+ +E+ L +DP S N +
Sbjct: 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341
Query: 441 -NRLLAMN-Y---INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 481
LL +N Y I +G D +A+ RLY Q DNT
Sbjct: 342 WESLLKVNRYWLLIQQG--DAALKANNLAQAE--RLYQQARQVDNT 383
|
Length = 1157 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
A A+YNLG AY ++ K+D A+ +YE A NP+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
A A YNLG Y +L YD AL YEKA
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKA 27
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAV 109
L+ A + +ALA E L + EA + G L Q GRL A A+
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQ--GRLAEAAALLRAAL 58
Query: 110 KLDPQNA 116
DP +
Sbjct: 59 AADPDDP 65
|
Length = 65 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 274 TKVKLEGDINQGVAYYKKALYYNWH---YADAMYNLGVAYGEMLKFDMAI-VFYEL--AF 327
+ K E NQ L A Y + ++D A+ + L A
Sbjct: 281 IRAKYEALPNQ----QAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ 336
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
NP+ E G I + + +A+E + AL++ PN NL GK A
Sbjct: 337 PDNPYYLEL---AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
++ + + +P ++ L Y + G+ + A+ A
Sbjct: 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431
|
Length = 484 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
+++L NLG Y GK D A E EKA+ NP
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 13/61 (21%), Positives = 18/61 (29%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
L + AG+ + + AL P A A LG + A A
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
Query: 222 P 222
P
Sbjct: 62 P 62
|
Length = 65 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+M+A +E + NP AE ++ LG Y G S A+ AY L++ D+
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI 192
|
Length = 287 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 921 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 100.0 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.98 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.98 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.94 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.93 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.93 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.93 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.93 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.93 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.91 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.9 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.88 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.88 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.88 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.85 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.84 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.84 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.83 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.83 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.82 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.82 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.82 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.82 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.81 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.8 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.8 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.77 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.76 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.76 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.76 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.75 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.74 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.74 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| PRK15490 | 578 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.69 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.66 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.61 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.6 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.58 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| PLN02949 | 463 | transferase, transferring glycosyl groups | 99.54 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.54 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.51 | |
| cd03796 | 398 | GT1_PIG-A_like This family is most closely related | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| TIGR03088 | 374 | stp2 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.48 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.48 | |
| PLN02871 | 465 | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | 99.48 | |
| PRK15427 | 406 | colanic acid biosynthesis glycosyltransferase WcaL | 99.47 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.45 | |
| cd03801 | 374 | GT1_YqgM_like This family is most closely related | 99.43 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.43 | |
| cd03820 | 348 | GT1_amsD_like This family is most closely related | 99.42 | |
| cd03792 | 372 | GT1_Trehalose_phosphorylase Trehalose phosphorylas | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.39 | |
| cd05844 | 367 | GT1_like_7 Glycosyltransferases catalyze the trans | 99.38 | |
| cd03822 | 366 | GT1_ecORF704_like This family is most closely rela | 99.38 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| cd04962 | 371 | GT1_like_5 This family is most closely related to | 99.37 | |
| TIGR03449 | 405 | mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino | 99.37 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.36 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| PRK15484 | 380 | lipopolysaccharide 1,2-N-acetylglucosaminetransfer | 99.35 | |
| cd03807 | 365 | GT1_WbnK_like This family is most closely related | 99.35 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.35 | |
| cd03813 | 475 | GT1_like_3 This family is most closely related to | 99.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.34 | |
| cd03811 | 353 | GT1_WabH_like This family is most closely related | 99.33 | |
| cd03806 | 419 | GT1_ALG11_like This family is most closely related | 99.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.32 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.32 | |
| cd03818 | 396 | GT1_ExpC_like This family is most closely related | 99.32 | |
| cd03821 | 375 | GT1_Bme6_like This family is most closely related | 99.31 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.31 | |
| cd03812 | 358 | GT1_CapH_like This family is most closely related | 99.3 | |
| cd03799 | 355 | GT1_amsK_like This is a family of GT1 glycosyltran | 99.3 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.29 | |
| cd04951 | 360 | GT1_WbdM_like This family is most closely related | 99.28 | |
| cd03798 | 377 | GT1_wlbH_like This family is most closely related | 99.27 | |
| cd03817 | 374 | GT1_UGDG_like This family is most closely related | 99.27 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.25 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.23 | |
| PRK10307 | 412 | putative glycosyl transferase; Provisional | 99.22 | |
| PRK09922 | 359 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D | 99.22 | |
| TIGR02149 | 388 | glgA_Coryne glycogen synthase, Corynebacterium fam | 99.2 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.2 | |
| TIGR02918 | 500 | accessory Sec system glycosylation protein GtfA. M | 99.2 | |
| cd03795 | 357 | GT1_like_4 This family is most closely related to | 99.2 | |
| cd03805 | 392 | GT1_ALG2_like This family is most closely related | 99.2 | |
| cd03808 | 359 | GT1_cap1E_like This family is most closely related | 99.2 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 99.18 | |
| cd04949 | 372 | GT1_gtfA_like This family is most closely related | 99.18 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.17 | |
| cd03825 | 365 | GT1_wcfI_like This family is most closely related | 99.17 | |
| cd03823 | 359 | GT1_ExpE7_like This family is most closely related | 99.16 | |
| TIGR03087 | 397 | stp1 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.15 | |
| cd03814 | 364 | GT1_like_2 This family is most closely related to | 99.15 | |
| cd03802 | 335 | GT1_AviGT4_like This family is most closely relate | 99.14 | |
| cd03819 | 355 | GT1_WavL_like This family is most closely related | 99.14 | |
| PLN02846 | 462 | digalactosyldiacylglycerol synthase | 99.14 | |
| cd04946 | 407 | GT1_AmsK_like This family is most closely related | 99.13 | |
| TIGR02470 | 784 | sucr_synth sucrose synthase. This model represents | 99.13 | |
| cd04955 | 363 | GT1_like_6 This family is most closely related to | 99.13 | |
| PLN00142 | 815 | sucrose synthase | 99.12 | |
| cd03809 | 365 | GT1_mtfB_like This family is most closely related | 99.11 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.09 | |
| PLN02316 | 1036 | synthase/transferase | 99.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| cd03800 | 398 | GT1_Sucrose_synthase This family is most closely r | 99.09 | |
| TIGR02472 | 439 | sucr_P_syn_N sucrose-phosphate synthase, putative, | 99.08 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.08 | |
| TIGR02468 | 1050 | sucrsPsyn_pln sucrose phosphate synthase/possible | 99.08 | |
| KOG1111 | 426 | consensus N-acetylglucosaminyltransferase complex, | 99.08 | |
| PLN02501 | 794 | digalactosyldiacylglycerol synthase | 99.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.06 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.05 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.03 | |
| PF00534 | 172 | Glycos_transf_1: Glycosyl transferases group 1; In | 99.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.02 | |
| cd03816 | 415 | GT1_ALG1_like This family is most closely related | 98.99 | |
| PRK00654 | 466 | glgA glycogen synthase; Provisional | 98.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.98 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.97 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.97 | |
| PRK14098 | 489 | glycogen synthase; Provisional | 98.97 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.94 | |
| PRK05749 | 425 | 3-deoxy-D-manno-octulosonic-acid transferase; Revi | 98.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.91 | |
| TIGR02095 | 473 | glgA glycogen/starch synthases, ADP-glucose type. | 98.91 | |
| PRK14099 | 485 | glycogen synthase; Provisional | 98.9 | |
| cd03804 | 351 | GT1_wbaZ_like This family is most closely related | 98.9 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.9 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| PRK13609 | 380 | diacylglycerol glucosyltransferase; Provisional | 98.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.88 | |
| cd03794 | 394 | GT1_wbuB_like This family is most closely related | 98.88 | |
| PLN02605 | 382 | monogalactosyldiacylglycerol synthase | 98.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.87 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.87 | |
| PHA01633 | 335 | putative glycosyl transferase group 1 | 98.86 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.85 | |
| PRK13608 | 391 | diacylglycerol glucosyltransferase; Provisional | 98.85 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.83 | |
| PHA01630 | 331 | putative group 1 glycosyl transferase | 98.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.81 | |
| PRK10125 | 405 | putative glycosyl transferase; Provisional | 98.81 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.8 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.78 | |
| PF13692 | 135 | Glyco_trans_1_4: Glycosyl transferases group 1; PD | 98.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.77 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.77 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.76 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| cd03791 | 476 | GT1_Glycogen_synthase_DULL1_like This family is mo | 98.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.72 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.71 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.7 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.69 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.69 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.69 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.69 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.68 | |
| PRK00726 | 357 | murG undecaprenyldiphospho-muramoylpentapeptide be | 98.67 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.67 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.67 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.66 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.66 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.65 | |
| TIGR02400 | 456 | trehalose_OtsA alpha,alpha-trehalose-phosphate syn | 98.64 | |
| cd03785 | 350 | GT1_MurG MurG is an N-acetylglucosaminyltransferas | 98.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.63 | |
| cd03788 | 460 | GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a | 98.63 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.62 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.6 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.6 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.57 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.57 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.57 | |
| TIGR00236 | 365 | wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras | 98.56 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.54 | |
| KOG1387 | 465 | consensus Glycosyltransferase [Cell wall/membrane/ | 98.54 | |
| PRK00025 | 380 | lpxB lipid-A-disaccharide synthase; Reviewed | 98.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.5 | |
| cd03786 | 363 | GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th | 98.5 | |
| TIGR01133 | 348 | murG undecaprenyldiphospho-muramoylpentapeptide be | 98.5 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.49 | |
| cd04950 | 373 | GT1_like_1 Glycosyltransferases catalyze the trans | 98.48 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.48 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.46 | |
| PLN02275 | 371 | transferase, transferring glycosyl groups | 98.46 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.45 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.45 | |
| TIGR00215 | 385 | lpxB lipid-A-disaccharide synthase. Lipid-A precur | 98.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.41 | |
| PRK14501 | 726 | putative bifunctional trehalose-6-phosphate syntha | 98.4 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.4 | |
| cd01635 | 229 | Glycosyltransferase_GTB_type Glycosyltransferases | 98.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.37 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.36 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.35 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.31 | |
| KOG0853 | 495 | consensus Glycosyltransferase [Cell wall/membrane/ | 98.3 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.28 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.27 | |
| PLN03063 | 797 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 98.27 | |
| TIGR03713 | 519 | acc_sec_asp1 accessory Sec system protein Asp1. Th | 98.25 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.23 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.21 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.2 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.19 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.19 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.14 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.09 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.08 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.04 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.04 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.02 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.01 | |
| COG0438 | 381 | RfaG Glycosyltransferase [Cell envelope biogenesis | 98.0 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.97 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.94 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.93 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.93 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.93 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.9 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.87 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.81 | |
| TIGR01426 | 392 | MGT glycosyltransferase, MGT family. This model de | 97.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.8 | |
| cd03793 | 590 | GT1_Glycogen_synthase_GSY2_like Glycogen synthase, | 97.8 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.75 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.75 | |
| TIGR03492 | 396 | conserved hypothetical protein. This protein famil | 97.75 | |
| TIGR02919 | 438 | accessory Sec system glycosyltransferase GtfB. Mem | 97.74 | |
| COG1819 | 406 | Glycosyl transferases, related to UDP-glucuronosyl | 97.73 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.73 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.72 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.71 | |
| PLN02670 | 472 | transferase, transferring glycosyl groups | 97.71 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.69 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.69 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.67 | |
| PF13524 | 92 | Glyco_trans_1_2: Glycosyl transferases group 1 | 97.65 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.63 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.57 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.54 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.52 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.52 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.51 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.49 | |
| PHA03392 | 507 | egt ecdysteroid UDP-glucosyltransferase; Provision | 97.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.49 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.49 | |
| PLN03004 | 451 | UDP-glycosyltransferase | 97.48 | |
| PLN02992 | 481 | coniferyl-alcohol glucosyltransferase | 97.47 | |
| TIGR02398 | 487 | gluc_glyc_Psyn glucosylglycerol-phosphate synthase | 97.47 | |
| COG0707 | 357 | MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami | 97.46 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.46 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.45 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.42 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.39 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.35 | |
| PLN03064 | 934 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 97.35 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.34 | |
| PLN02863 | 477 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.33 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.33 | |
| PLN02410 | 451 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.31 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.3 | |
| PLN03007 | 482 | UDP-glucosyltransferase family protein | 97.29 | |
| PLN02764 | 453 | glycosyltransferase family protein | 97.27 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.27 | |
| PLN02167 | 475 | UDP-glycosyltransferase family protein | 97.26 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.26 | |
| cd03784 | 401 | GT1_Gtf_like This family includes the Gtfs, a grou | 97.25 | |
| PLN02554 | 481 | UDP-glycosyltransferase family protein | 97.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.24 | |
| PLN02210 | 456 | UDP-glucosyl transferase | 97.22 | |
| PF00201 | 500 | UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera | 97.21 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 97.19 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.18 | |
| PLN00414 | 446 | glycosyltransferase family protein | 97.16 | |
| PLN02448 | 459 | UDP-glycosyltransferase family protein | 97.11 | |
| PLN02562 | 448 | UDP-glycosyltransferase | 97.06 | |
| PLN02207 | 468 | UDP-glycosyltransferase | 97.06 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.04 | |
| PLN00164 | 480 | glucosyltransferase; Provisional | 97.02 | |
| PF13528 | 318 | Glyco_trans_1_3: Glycosyl transferase family 1 | 97.02 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 97.01 | |
| PLN02173 | 449 | UDP-glucosyl transferase family protein | 96.97 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.96 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.96 | |
| PLN02208 | 442 | glycosyltransferase family protein | 96.95 | |
| PLN02555 | 480 | limonoid glucosyltransferase | 96.94 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.94 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.9 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.89 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.88 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.86 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.86 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.83 | |
| COG0297 | 487 | GlgA Glycogen synthase [Carbohydrate transport and | 96.82 | |
| PLN03015 | 470 | UDP-glucosyl transferase | 96.8 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.79 | |
| PRK12446 | 352 | undecaprenyldiphospho-muramoylpentapeptide beta-N- | 96.74 | |
| PLN02152 | 455 | indole-3-acetate beta-glucosyltransferase | 96.71 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.7 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.65 | |
| PLN02534 | 491 | UDP-glycosyltransferase | 96.63 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.58 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.56 | |
| PF02350 | 346 | Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; | 96.55 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.4 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.36 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.33 | |
| PRK09814 | 333 | beta-1,6-galactofuranosyltransferase; Provisional | 96.31 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.24 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.2 | |
| PF02684 | 373 | LpxB: Lipid-A-disaccharide synthetase; InterPro: I | 96.18 | |
| TIGR00661 | 321 | MJ1255 conserved hypothetical protein. This model | 96.17 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.13 | |
| PF06258 | 311 | Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP | 96.09 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.01 | |
| PRK02797 | 322 | 4-alpha-L-fucosyltransferase; Provisional | 95.99 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.99 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.96 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.94 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.93 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.9 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.89 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.89 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.88 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.81 | |
| TIGR02094 | 601 | more_P_ylases alpha-glucan phosphorylases. This fa | 95.77 | |
| COG1519 | 419 | KdtA 3-deoxy-D-manno-octulosonic-acid transferase | 95.74 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.68 | |
| PF05693 | 633 | Glycogen_syn: Glycogen synthase; InterPro: IPR0086 | 95.65 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.65 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.56 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.55 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.53 | |
| TIGR03568 | 365 | NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, | 95.52 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.48 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.31 | |
| cd04299 | 778 | GT1_Glycogen_Phosphorylase_like This family is mos | 95.11 | |
| COG0763 | 381 | LpxB Lipid A disaccharide synthetase [Cell envelop | 95.11 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 95.04 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.03 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.01 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 94.97 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.83 | |
| KOG1192 | 496 | consensus UDP-glucuronosyl and UDP-glucosyl transf | 94.8 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.71 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.7 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.67 | |
| KOG2941 | 444 | consensus Beta-1,4-mannosyltransferase [Posttransl | 94.63 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.58 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.53 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.49 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.48 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.47 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.29 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.22 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.17 | |
| PF04007 | 335 | DUF354: Protein of unknown function (DUF354); Inte | 94.15 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.12 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.03 | |
| COG4370 | 412 | Uncharacterized protein conserved in bacteria [Fun | 94.02 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.99 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.84 | |
| cd03789 | 279 | GT1_LPS_heptosyltransferase Lipopolysaccharide hep | 93.8 | |
| PF07429 | 360 | Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc | 93.69 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 93.58 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.42 | |
| PF04101 | 167 | Glyco_tran_28_C: Glycosyltransferase family 28 C-t | 93.32 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.17 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 93.13 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.12 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 93.1 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 93.09 | |
| PF05159 | 269 | Capsule_synth: Capsule polysaccharide biosynthesis | 93.03 | |
| PF01075 | 247 | Glyco_transf_9: Glycosyltransferase family 9 (hept | 92.9 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.89 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 92.7 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.69 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 92.66 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.51 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.48 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.43 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.9 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 91.83 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.72 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 91.67 | |
| PRK10916 | 348 | ADP-heptose:LPS heptosyltransferase II; Provisiona | 91.62 | |
| TIGR02201 | 344 | heptsyl_trn_III lipopolysaccharide heptosyltransfe | 91.45 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 91.18 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 91.16 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 90.95 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-161 Score=1262.67 Aligned_cols=835 Identities=40% Similarity=0.591 Sum_probs=786.1
Q ss_pred CCCCccccCcccCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 12 RERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGIC 91 (921)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (921)
.++-.+.+..+..+.....+...+.. .....+.-++.+-.+|+++..+|++++|+..|+.++++.|+..++|.++|.+
T Consensus 82 ~~~llll~ai~~q~~r~d~s~a~~~~--a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~a 159 (966)
T KOG4626|consen 82 TERLLLLSAIFFQGSRLDKSSAGSLL--AIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAA 159 (966)
T ss_pred ccceeeehhhhhcccchhhhhhhhhh--hhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHH
Confidence 45566667777776664444332222 2233444567777799999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcC
Q 002443 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171 (921)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g 171 (921)
+...|+.+.|.++|..+++++|....+...+|.++..+|+..+|..+|.++++..|.. +.+|.++|..+..+|
T Consensus 160 l~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-------AiawsnLg~~f~~~G 232 (966)
T KOG4626|consen 160 LVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-------AIAWSNLGCVFNAQG 232 (966)
T ss_pred HHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce-------eeeehhcchHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999975 445888899999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002443 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (921)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (921)
+...|+.+|+++++++|+..++|++||.+|.+.+.+++|+.+|.+++...|++..++.++|.+|+++|..+-|+..|+++
T Consensus 233 ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra 312 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA 312 (966)
T ss_pred hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002443 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331 (921)
Q Consensus 252 l~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 331 (921)
+++.|.+++++.+++.++..+ |+..+|..+|.+++.+.|..+++.++||.+|.++|++++|..+|.++++..|
T Consensus 313 l~~~P~F~~Ay~NlanALkd~-------G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 313 LELQPNFPDAYNNLANALKDK-------GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred HhcCCCchHHHhHHHHHHHhc-------cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 999999999998888888775 6999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (921)
Q Consensus 332 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 411 (921)
..+.+..+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+.+|.+++..+|..++++.+||.+
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCCh-----HHHHHHHHHHHH--HHHhh-------------
Q 002443 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDWGK--RFMRL------------- 471 (921)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~------------- 471 (921)
|...|+..+|++.|+++|+++||.+++..|++.++.++.+|.+ +++.+.+++|.. ++...
T Consensus 466 ~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~ 545 (966)
T KOG4626|consen 466 YKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHI 545 (966)
T ss_pred hhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchH
Confidence 9999999999999999999999999999999999999999987 788888998883 33222
Q ss_pred ---------------------ccCCCCCCCCCCCCCCceeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCC
Q 002443 472 ---------------------YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD 530 (921)
Q Consensus 472 ---------------------~~~~~~~~~~~~~~~~lriGyvS~df~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d 530 (921)
.+|+..|.+-+.+++||||||||+||.+||+++||++++.+|||++||||||+.++.++
T Consensus 546 ~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~ 625 (966)
T KOG4626|consen 546 LRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDG 625 (966)
T ss_pred HHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecCCC
Confidence 13467788888889999999999999999999999999999999999999999988655
Q ss_pred hhhHHHHHHHhhhCCeeEEccCCCHHHHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCCCCCccE
Q 002443 531 AKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDY 610 (921)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~ApvQ~~~~G~p~ttG~~~~Dy 610 (921)
. .||.++.++++||.|+++++...+|+.|++|+|||||+|+|||.|+|.++||+|||||||+|+|||+|||+++|||
T Consensus 626 t---~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~mDY 702 (966)
T KOG4626|consen 626 T---NFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFMDY 702 (966)
T ss_pred c---hHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeEEeecCCCCCCCceeeE
Confidence 3 2899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCcccCcccceEEcCCCccccCCCC--------CCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHH
Q 002443 611 RITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------EAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARI 682 (921)
Q Consensus 611 ~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~i 682 (921)
+|||.++.|++....|+|||++||+||++++|.+ ...|+++.+++++|+|||||||+++||+|.++++|++|
T Consensus 703 iITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~W~~I 782 (966)
T KOG4626|consen 703 IITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQMWANI 782 (966)
T ss_pred EeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeechhhhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999876 56689999999999999999999999999999999999
Q ss_pred HhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcC
Q 002443 683 LCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG 762 (921)
Q Consensus 683 l~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~G 762 (921)
|++||||+||+++.|+.++ ++++..++++|++++||+|.+... .++|++++.++||+|||++|+|+||++|.||||
T Consensus 783 Lk~VPnS~LwllrfPa~ge---~rf~ty~~~~Gl~p~riifs~va~-k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~G 858 (966)
T KOG4626|consen 783 LKRVPNSVLWLLRFPAVGE---QRFRTYAEQLGLEPDRIIFSPVAA-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAG 858 (966)
T ss_pred HHhCCcceeEEEeccccch---HHHHHHHHHhCCCccceeeccccc-hHHHHHhhhhhhhcccCcCcCCcccchhhhccC
Confidence 9999999999999998765 899999999999999999999877 599999999999999999999999999999999
Q ss_pred CcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002443 763 VPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 763 vPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 842 (921)
||+|||||+++++||++|+|..+|++++|+++.+||+++||+|++|.+.|+.+|.++|..+..|||||..+|+..||++|
T Consensus 859 vPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y 938 (966)
T KOG4626|consen 859 VPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLY 938 (966)
T ss_pred CceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCchhhhhhhhcccc
Q 002443 843 RNMWHRYCKGDVPSLKRMEMLQQQVVS 869 (921)
Q Consensus 843 ~~~~~~~~~~~~p~~~~~~~~~~~~~~ 869 (921)
.+||.+||.|.+|.++|++.+|+...+
T Consensus 939 ~~MW~~y~~G~~p~h~~me~~~e~~hd 965 (966)
T KOG4626|consen 939 LQMWKKYCSGEVPDHRRMENLQEEPHD 965 (966)
T ss_pred HHHHHHhccCCCCchHHHhccccCcCC
Confidence 999999999999999999998876543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-104 Score=841.86 Aligned_cols=549 Identities=30% Similarity=0.485 Sum_probs=458.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 282 INQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 282 ~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
..-++..+...+..++.+++.+.. +...+...+....+......++..+|++..+..+++......|....+...+..
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333555555555667777765333 466777778888888888999999999999999998888887766666655554
Q ss_pred -HHhhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002443 360 -ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 360 -al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
+....|++......+ +.....+|+..++...++++..+.|.++.+...+.....+...+. ...
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~~ 196 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EEA 196 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hcc
Confidence 788888887755555 788888888999999999999999988766655555533333332 333
Q ss_pred CCChhhHhhHHHHh-----hhccCCChHHHHHHHHHHHHHHHhhcc---CCCCCC-CCCCCCCCceeeccCCCcccchhh
Q 002443 433 PDSRNAGQNRLLAM-----NYINEGHDDKLFEAHRDWGKRFMRLYS---QYTSWD-NTKDPERPLVIGYVSPDYFTHSVS 503 (921)
Q Consensus 433 P~~~~a~~~~l~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~lriGyvS~df~~H~v~ 503 (921)
|.+.....+..+.. .|+.+ ++..-........+.+....+ .++.|+ +.+..++|+||||+|+|++.|+|+
T Consensus 197 ~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg 275 (620)
T COG3914 197 PTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVG 275 (620)
T ss_pred chHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchHH
Confidence 43333332222221 12211 122222333344444442222 234444 233457899999999999999999
Q ss_pred hhhhcccccccCCceEEEEEecc-cCCChhhHHHHHHHhhhCCeeEEccCCCHHHHHHHHHhCCccEEEecCCCCCCCch
Q 002443 504 YFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKL 582 (921)
Q Consensus 504 ~~~~~~l~~hd~~~fev~~Y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idiLvdl~g~t~~~r~ 582 (921)
+++.+++++|||++||||+|+.+ +..|..+.|++..+ .+|.++.+|+|.++|++|+.|+||||||++|||..+|.
T Consensus 276 ~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~ 351 (620)
T COG3914 276 FLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRC 351 (620)
T ss_pred HHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccch
Confidence 99999999999999999999998 66788889998887 46999999999999999999999999999999999999
Q ss_pred hhhhcCCCceEEeeccCCCCCCCCCccEEEecCCCCCCCcccCcccceEEcCCCccccCCCCCCCCC-----CCCCCCCC
Q 002443 583 GMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPV-----CPTPALTN 657 (921)
Q Consensus 583 ~~~a~r~ApvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~-----~~~~~~~~ 657 (921)
.|||+|||||||||+|||+|||+|.|||||+|++++||+.+.+|+|+|+|||. ||.|.....++ +..+++++
T Consensus 352 ~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~---cy~p~d~~~~v~p~~sR~~lglp~ 428 (620)
T COG3914 352 QVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQ---CYQPVDGFEPVTPPPSRAQLGLPE 428 (620)
T ss_pred hhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhccc---ccCCCCCcccCCCCcchhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999995 56676554433 44589999
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhc
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 737 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 737 (921)
+.+||||||+.+|++|+++++|++||++||||+|||+++| .++.+.++|+..++++||+.+|++|+|..+ .++|+++|
T Consensus 429 ~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~-~~~h~a~~ 506 (620)
T COG3914 429 DAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARLRDLAEREGVDSERLRFLPPAP-NEDHRARY 506 (620)
T ss_pred CeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcHHHHHHHHHHHHHcCCChhheeecCCCC-CHHHHHhh
Confidence 9999999999999999999999999999999999999876 678899999999999999999999999988 57999999
Q ss_pred ccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002443 738 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 817 (921)
Q Consensus 738 ~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~ 817 (921)
..+||+||||||+||||++|||||||||||+.|++|++|+|+||++++|++|+||.|.++||++||++++|.+.+++.|.
T Consensus 507 ~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~ 586 (620)
T COG3914 507 GIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRA 586 (620)
T ss_pred chhheeeecccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002443 818 SLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 850 (921)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 850 (921)
.+++.+.+|||||++.|+++||.+|.+||.+|.
T Consensus 587 ~l~~~r~tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 587 ELKRSRQTSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred HHHhccccCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999874
|
|
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-97 Score=805.50 Aligned_cols=351 Identities=45% Similarity=0.753 Sum_probs=285.1
Q ss_pred ceeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCC-hhhHHHHHHHhhhCCeeEEccCCC-HHHHHHHHHhC
Q 002443 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD-AKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 565 (921)
Q Consensus 488 lriGyvS~df~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~i~~d 565 (921)
|||||||+||++|||++|+.+++++||+++|||+||+.++.++ ..+++++. .+++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~----~~~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRA----EADHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHH----HSEEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHH----hCCeEEECccCCcHHHHHHHHHHC
Confidence 7999999999999999999999999999999999999986543 34555544 458999999987 68999999999
Q ss_pred CccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCCCCCccEEEecCCCCCCCcccCcccceEEcCCCccccCCC--
Q 002443 566 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS-- 643 (921)
Q Consensus 566 ~idiLvdl~g~t~~~r~~~~a~r~ApvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~-- 643 (921)
+|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++|++.+.+|+|||+|||++|+|+++.
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~ 156 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQM 156 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986321
Q ss_pred --------------------------------------------------------------------------------
Q 002443 644 -------------------------------------------------------------------------------- 643 (921)
Q Consensus 644 -------------------------------------------------------------------------------- 643 (921)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T PF13844_consen 157 FPHLKERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIAS 236 (468)
T ss_dssp -GGGSS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHH
T ss_pred hhhhhhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHc
Confidence
Q ss_pred ----------------------------CCCC-----CCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcE
Q 002443 644 ----------------------------PEAG-----PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR 690 (921)
Q Consensus 644 ----------------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~ 690 (921)
.+.| +.+...+|++|+|||||||+++||+|+++++|++||+++|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~ 316 (468)
T PF13844_consen 237 GQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSR 316 (468)
T ss_dssp T-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEE
T ss_pred CCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcE
Confidence 0000 1233457899999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002443 691 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 691 l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
|||+..+. ...++++++++++||+++||+|.|..+ ..+|+.+|+.+||+|||||||||||++|||||||||||++|
T Consensus 317 L~L~~~~~---~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 317 LWLLRFPA---SGEARLRRRFAAHGVDPDRIIFSPVAP-REEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp EEEEETST---THHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---
T ss_pred EEEeeCCH---HHHHHHHHHHHHcCCChhhEEEcCCCC-HHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 99987653 345789999999999999999999876 78999999999999999999999999999999999999999
Q ss_pred CcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002443 771 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 771 ~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 846 (921)
++|+||+|+|+|+++|++||||.|.++||++|++|++|+++|+++|++||+++.+|||||.++|+++||++|++||
T Consensus 393 ~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 393 ETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=380.77 Aligned_cols=420 Identities=28% Similarity=0.420 Sum_probs=381.2
Q ss_pred CCCCCCCCCCcccccccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-------------------------
Q 002443 27 QSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN------------------------- 81 (921)
Q Consensus 27 ~~~~~~s~s~~~~~~~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~------------------------- 81 (921)
++.+.++++.+...-..........+++|...++.|+|.+|++....+...+|.+
T Consensus 27 ~~~~s~~s~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~ 106 (966)
T KOG4626|consen 27 QSVSSSGSSSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSL 106 (966)
T ss_pred cCcccccchHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhh
Confidence 3333333343333333444455668999999999999999999988776655543
Q ss_pred ---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002443 82 ---------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 82 ---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
.+++-++|.++...|++++|+..|+.+++++|++.++|.++|.++...|+.+.|..+|..+++++|....
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c- 185 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC- 185 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh-
Confidence 5678889999999999999999999999999999999999999999999999999999999999998644
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (921)
Q Consensus 153 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 232 (921)
+...+|..+...|+..+|..+|.++++..|..+.+|.+||.++..+|+...|+..|+++++++|+..++|+++|
T Consensus 186 ------a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLG 259 (966)
T KOG4626|consen 186 ------ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLG 259 (966)
T ss_pred ------hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002443 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312 (921)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 312 (921)
.+|...+.+++|+.+|.+++.+.|++.. ++-+++.+|..+|.++-|+..|+++++..|..++++.++|.++..
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~-------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHAV-------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcchh-------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 9999999999999999999999998754 455667777778999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (921)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 392 (921)
.|+..+|..+|.+++.+.|+.+++.++||.+|.++|++++|..+|+++++..|..+.++.+||.+|.++|++++|+.+|+
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHHH
Q 002443 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (921)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~ 462 (921)
+++.+.|..++++.++|..|..+|+...|+++|.+|+.++|...+++.|+ +..|-..|+-.+.+..++
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL--asi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL--ASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH--HHHhhccCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999995 556666676666555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=330.08 Aligned_cols=382 Identities=16% Similarity=0.178 Sum_probs=331.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.||..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 445778999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHh------------------------------HHHHHHH------------------
Q 002443 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAIV------------------ 159 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~------------------------------~~~la~~------------------ 159 (921)
.+|++++|+..|..+....+..... ...++..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999998887765544322111 0011110
Q ss_pred --------HHHHHHHH---HHcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002443 160 --------LTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (921)
Q Consensus 160 --------~~~lg~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (921)
+..++... ...+++++|++.|++++.. .|....++..+|.++..+|++++|+..|+++++.+|.+.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 11111111 1236899999999999986 477888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002443 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (921)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 305 (921)
..+..+|.++...|++++|+..|+++++.+|++...+..++.+ +...|++++|+..|+++++.+|++...+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL-------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 9999999999999999999999999999999987766555544 455679999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHH-H
Q 002443 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS------LNNLGVV-Y 378 (921)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~-~ 378 (921)
+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|++.|++++++.|+.... +...+.+ +
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875332 2233333 3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002443 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 379 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
...|++++|+.+++++++++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 44799999999999999999999999999999999999999999999999999887554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=333.75 Aligned_cols=404 Identities=20% Similarity=0.188 Sum_probs=331.3
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (921)
.+...+..+|..+...|++++|+..|+++++.+|++..+++.++.++...|++++|+..|+++++.+|.+..++..++.+
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 35567777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002443 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (921)
+...|++++|+..++++++.+|.+... +..++..+...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888776554 4556777778888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----------------
Q 002443 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL---------------- 269 (921)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---------------- 269 (921)
++++|+..|+++++..|.++..+..+|.++...|++++|+..|+++++..|++...+..++.++
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888766665554443
Q ss_pred -----------HhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002443 270 -----------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (921)
Q Consensus 270 -----------~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 338 (921)
..+|.++...|++++|+..|++++...|+. ..+..++.++...|++++|+..++++++..|++..+++
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334556667788888888888888888776 66777888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002443 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (921)
Q Consensus 339 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (921)
.+|.++...|++++|+.+|+++++.+|+++.++.+++.++...|+ .+|+.+++++++..|+++..+..+|.++...|++
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 888888888888888888888888888888888888888888888 7788888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHH
Q 002443 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460 (921)
Q Consensus 419 ~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~ 460 (921)
++|+.+|+++++.+|+++.+..++ +..+...|+.++..+.
T Consensus 854 ~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHH
Confidence 888888888888888877776664 4445556666555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-30 Score=326.30 Aligned_cols=412 Identities=18% Similarity=0.188 Sum_probs=300.7
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------------------------CCHH------
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVE------ 83 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p----------------------------------~~~~------ 83 (921)
.+.+...++.+|..++..|++++|+..++++++..+ +...
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~ 256 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARS 256 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHH
Confidence 355778899999999999999999999999865332 1110
Q ss_pred --------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002443 84 --------------AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 84 --------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++
T Consensus 257 ~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 257 QLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 001347888899999999999999999999999999999999999999999999999999999987
Q ss_pred hHhH--HHH-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002443 150 KPAA--ECL-----AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (921)
Q Consensus 150 ~~~~--~~l-----a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 222 (921)
.... ..+ ......+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5421 111 122345688899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH------------------------------------------HHCCCHHHHHHHHHHHHHhCCChHH
Q 002443 223 MYAEAYCNMGVIY------------------------------------------KNRGDLESAIACYERCLAVSPNFEI 260 (921)
Q Consensus 223 ~~~~~~~~la~~~------------------------------------------~~~g~~~~A~~~~~~al~~~p~~~~ 260 (921)
++..++..++.+| ...|++++|++.|+++++.+|++..
T Consensus 417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~ 496 (1157)
T PRK11447 417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW 496 (1157)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9887776666554 3456666666666666666666654
Q ss_pred HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--------------
Q 002443 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA-------------- 326 (921)
Q Consensus 261 ~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------- 326 (921)
.+..+ +.++...|++++|+..++++++..|+++..++.++..+...+++++|+..++++
T Consensus 497 ~~~~L-------A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 497 LTYRL-------AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred HHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 43333 333333556666766666666666666666666555555555555555544331
Q ss_pred --------------------------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 327 --------------------------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (921)
Q Consensus 327 --------------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (921)
++..|.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++..
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 122455566666777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhh----HhhHHHHhhhccCCChHH
Q 002443 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA----GQNRLLAMNYINEGHDDK 456 (921)
Q Consensus 381 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a----~~~~l~a~~~~~~~~~~~ 456 (921)
.|++++|++.++++++..|++..++..+|.++..+|++++|+++|++++...|+++.. ...+..+..+...|+.++
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777777777777777777777777777777777777766655432 111122444455566555
Q ss_pred HHHHHH
Q 002443 457 LFEAHR 462 (921)
Q Consensus 457 ~~~~~~ 462 (921)
....++
T Consensus 730 A~~~y~ 735 (1157)
T PRK11447 730 ALETYK 735 (1157)
T ss_pred HHHHHH
Confidence 554433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=328.72 Aligned_cols=367 Identities=15% Similarity=0.115 Sum_probs=328.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH--------------H
Q 002443 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (921)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 118 (921)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 44888999999999999999999999999999999999999999999999999999999997642 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002443 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (921)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2355788999999999999999999999988654 677889999999999999999999999999877765554
Q ss_pred HH------------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 199 VV------------------------------------------YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (921)
Q Consensus 199 ~~------------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (921)
.+ +...|++++|+..|+++++.+|+++.+++.+|.+|.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44 456799999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-------------------------------------hhhhhhhhc
Q 002443 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALT-------------------------------------DLGTKVKLE 279 (921)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------------------------------------~lg~~~~~~ 279 (921)
..|++++|+..++++++..|++......++..+. .++..+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999999998877655543322 234455667
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
|++++|+.+++ ..|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|++.|++
T Consensus 587 G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77778877665 57889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 360 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
+++..|++..++..+|.++...|++++|+++|++++...|+. +.++..+|.++...|++++|+..|++++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987654 34667789999999999999999999986
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-30 Score=319.84 Aligned_cols=387 Identities=21% Similarity=0.214 Sum_probs=323.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (921)
..+.++..+...|++++|+..+++++...|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 34445556666666666666666666666777777777788888888888888888888887887777777888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002443 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 209 (921)
|++++|++.|+++++..|++... +..++.++...|++++|+..+++++..+|.+...+..++.++...|++++
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRA-------ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence 88888888888888777776544 55667777778888888888888888888888888888888888888999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHH
Q 002443 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (921)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~ 289 (921)
|+..++++++..|.+...+..+|.++...|++++|+..|+++++..|.+...+.. ++..+...|++++|+..+
T Consensus 586 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL-------LADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH-------HHHHHHHcCCHHHHHHHH
Confidence 9998888888888888889999999999999999999999998888887655544 444455567999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002443 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (921)
Q Consensus 290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (921)
+++++.+|++..++..++.++...|++++|+..++.+.+..|.+...+..+|.++...|++++|++.|+++++..|++ .
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhc
Q 002443 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~ 449 (921)
.+..++.++...|++++|++.++++++.+|++..+++.+|.+|...|++++|++.|+++++.+|+++.+..++. ..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA--WLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999887776643 3444
Q ss_pred cCCC
Q 002443 450 NEGH 453 (921)
Q Consensus 450 ~~~~ 453 (921)
..++
T Consensus 816 ~~~~ 819 (899)
T TIGR02917 816 ELKD 819 (899)
T ss_pred hcCc
Confidence 4444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-29 Score=298.26 Aligned_cols=362 Identities=10% Similarity=-0.016 Sum_probs=261.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (921)
....+...+..+...|++++|+.+++.++...|.+..+++.+|.+....|++++|+..|+++++.+|+++.++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34456666777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
...|++++|+..|+++++++|++... +..++.++...|++++|+..+++++...|+...++..++ .+...|+
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~ 192 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSR 192 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCC
Confidence 88888888888888888888877654 555666677778888888888877777777777766654 3677788
Q ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHH-
Q 002443 207 YDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ- 284 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~- 284 (921)
+++|+..++++++..| ........++.++...|++++|+..|+++++..|++...+..++.++.. .|++++
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-------~G~~~eA 265 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-------SGRSREA 265 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCchhh
Confidence 8888888888777764 3333445556777777777777777777777777766555444444433 445553
Q ss_pred ---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002443 285 ---GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (921)
Q Consensus 285 ---A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (921)
|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002443 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 362 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
+.+|++...+..+|.++...|++++|+..|+++++.+|++. ..++++|+..|.++++..+..
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCc
Confidence 77777666666666777777777777777777777777653 244456666666666665444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-29 Score=296.45 Aligned_cols=363 Identities=20% Similarity=0.179 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 002443 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (921)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (921)
+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.+|..+|++++|++.++++++++|++..+ ++
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 456778999999999999999999999999996 7789999999999999999999999999999998765 77
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCC------------------------------HHHH-----------------
Q 002443 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHY------------------------------APAY----------------- 194 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------~~~~----------------- 194 (921)
.+|.++...|++++|+..|..+...++.. ...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 78888888899999988776554332211 1111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002443 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (921)
Q Consensus 195 ----------------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (921)
..++..+ ...++|++|+..|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1236799999999999986 47778899999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002443 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (921)
Q Consensus 253 ~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 332 (921)
+++|+....+..++.++ ...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 359 ~l~P~~~~~~~~la~~~-------~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMN-------LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HcCCCcHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 99999876665555554 45679999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------H
Q 002443 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY------N 406 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~------~ 406 (921)
+...+..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|++.|++++++.|+....+ .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753322 2
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHH
Q 002443 407 NLG-VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (921)
Q Consensus 407 ~la-~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~ 461 (921)
..+ .++...|++++|+++++++++++|++..++.. ++..+...|+.++.....
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHH
Confidence 223 33445799999999999999999998876554 455666677766655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-29 Score=293.23 Aligned_cols=344 Identities=13% Similarity=0.015 Sum_probs=316.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 002443 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (921)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 159 (921)
++..-+...+..+...|++++|+..++.++...|+++.+++.+|.+....|++++|+..|+++++.+|++..+
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a------- 112 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPED------- 112 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHH-------
Confidence 3444566778888999999999999999999999999999999999999999999999999999999999776
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002443 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|++...+..++ .+...|
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g 191 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKS 191 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcC
Confidence 6777888888999999999999999999999999999999999999999999999999999999988887765 488999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-
Q 002443 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM- 318 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~- 318 (921)
++++|+..++++++..|...... ...++..+...|++++|+..++++++.+|++..++..+|.++...|++++
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 99999999999999876432211 12334556678899999999999999999999999999999999999986
Q ss_pred ---HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002443 319 ---AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (921)
Q Consensus 319 ---A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 395 (921)
|+..|+++++.+|++..++..+|.++...|++++|+.+++++++++|+++.++..+|.++...|++++|+..|++++
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002443 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
..+|++...+..+|.++...|++++|+..|+++++.+|++..
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 999999888888899999999999999999999999999753
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-28 Score=284.02 Aligned_cols=530 Identities=12% Similarity=0.055 Sum_probs=344.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002443 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (921)
Q Consensus 284 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (921)
+++.-+.......|.+++++.+||.+....|.+++|+..++.++++.|++..+..+++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33333444445578889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHH
Q 002443 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (921)
Q Consensus 364 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l 443 (921)
+|+++.+++.+|.++.++|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.....+++
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887776655654
Q ss_pred HHhhh----ccC----C----ChHHH---HHHHHHHHHHHHhhccCCCCCCCCCCCCCCc-eeeccCCCcccchhhhhhh
Q 002443 444 LAMNY----INE----G----HDDKL---FEAHRDWGKRFMRLYSQYTSWDNTKDPERPL-VIGYVSPDYFTHSVSYFIE 507 (921)
Q Consensus 444 ~a~~~----~~~----~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-riGyvS~df~~H~v~~~~~ 507 (921)
.-++- +.. + .+-.. -.+...++.+ ++ ..++ ..|.++. ||-++-..+..=-.-.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~--~~~~~~~~rIl~vi~sl~~GGAEr~~~ 301 (694)
T PRK15179 230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR-----RN-AEYD--AGPESFVGPVLMINGSLGAGGAERQFV 301 (694)
T ss_pred HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc-----Cc-cccc--CCCCCCcceEEEEeCCCCCCcHHHHHH
Confidence 32221 110 0 00000 0011111111 11 1111 2345666 7777755543211222333
Q ss_pred cccccccCC--------------ceEEEEEecccC--CChhhHHHHHHHhhhCCeeEEccC-------------------
Q 002443 508 APLVYHDYQ--------------NYKVVVYSAVVK--ADAKTIRFREKVMKKGGIWRDIYG------------------- 552 (921)
Q Consensus 508 ~~l~~hd~~--------------~fev~~Y~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~------------------- 552 (921)
.+..+.++. ..+|+|.+.... .+.....+++.-. .-++....+
T Consensus 302 ~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv--~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (694)
T PRK15179 302 NTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGI--PVSVYSDMQAWGGCEFSSLLAPYREYLR 379 (694)
T ss_pred HHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCC--eEEEeccCCccCcccccccchhhHHHhh
Confidence 333333333 245666544221 1233333332100 001111110
Q ss_pred -CC------HHHHHHHHHhCCccEEEecCCCCCC-CchhhhhcCC--CceEE-eeccCCCCCCCC--------------C
Q 002443 553 -ID------EKKVAAMVREDKIDILVELTGHTAN-NKLGMMACQP--APVQV-TWIGYPNTTGLP--------------T 607 (921)
Q Consensus 553 -~~------~~~~a~~i~~d~idiLvdl~g~t~~-~r~~~~a~r~--ApvQ~-~~~G~p~ttG~~--------------~ 607 (921)
++ -..+.+.|++.++||+.- |+.. +.++.++.+. .|+-+ ++-|+|...... .
T Consensus 380 ~lp~~~~~~~~~L~~~lk~~kpDIVH~---h~~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~ 456 (694)
T PRK15179 380 FLPKQIIEGTTKLTDVMRSSVPSVVHI---WQDGSIFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLK 456 (694)
T ss_pred hcchhHHHHHHHHHHHHHHcCCcEEEE---eCCcHHHHHHHHHHHcCCCEEEEEeCCCccccchhHHHHHHHHHHHHHHh
Confidence 00 146778899999999983 3322 2344455433 45544 333433211100 0
Q ss_pred c--cEEEecCCCCCCCc---ccCcccceEEcCCCcc--ccCCCCCCCC--CCCCCCCCCCCeEEEecCCC--CcCCHHHH
Q 002443 608 I--DYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGP--VCPTPALTNGFITFGSFNNL--AKITPKVL 676 (921)
Q Consensus 608 ~--Dy~i~d~~~~p~~~---~~~~~e~~~~lp~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~K~~~~~~ 676 (921)
+ +.+|+.....-... -..-.+++..+|+..- .|.|.+.... ..-....+++.+++|++.++ .|..+.++
T Consensus 457 ~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI 536 (694)
T PRK15179 457 MRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWV 536 (694)
T ss_pred cCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHH
Confidence 1 23333211000000 0122357777776421 1222111000 00011234566778888764 79999999
Q ss_pred HHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccH
Q 002443 677 QVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTT 755 (921)
Q Consensus 677 ~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~ 755 (921)
++++++++..|+.+|+|+|.+ ..++.+++..+++|+. +||.|.|.+. +....|..+||++-|+.+ +.++++
T Consensus 537 ~A~a~l~~~~p~~~LvIvG~G----~~~~~L~~l~~~lgL~-~~V~flG~~~---dv~~ll~aaDv~VlpS~~Egfp~vl 608 (694)
T PRK15179 537 EAAQRFAASHPKVRFIMVGGG----PLLESVREFAQRLGMG-ERILFTGLSR---RVGYWLTQFNAFLLLSRFEGLPNVL 608 (694)
T ss_pred HHHHHHHHHCcCeEEEEEccC----cchHHHHHHHHHcCCC-CcEEEcCCcc---hHHHHHHhcCEEEeccccccchHHH
Confidence 999999999999999999976 4567888899999998 9999999864 455667779999999877 669999
Q ss_pred HHHhhcCCcEEecCCCcccccchh-HHHhhcCCcccccC--C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCC
Q 002443 756 CESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIAK--N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCD 830 (921)
Q Consensus 756 ~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~i~~--~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~ 830 (921)
+|||+||+|||+ +++++ .-+-.-|...++.. | .+++.+...++..+......+++..|++.. ..|+
T Consensus 609 LEAMA~G~PVVa-------t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~--~~FS 679 (694)
T PRK15179 609 IEAQFSGVPVVT-------TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWAS--ARFS 679 (694)
T ss_pred HHHHHcCCeEEE-------ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHH--HhCC
Confidence 999999999998 55551 11111244455543 3 246666666655554444566666666653 3499
Q ss_pred hHHHHHHHHHHHH
Q 002443 831 GQNFALGLESTYR 843 (921)
Q Consensus 831 ~~~~~~~~e~~~~ 843 (921)
+..+++.++++|+
T Consensus 680 ~~~~~~~~~~lY~ 692 (694)
T PRK15179 680 LNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999995
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=252.16 Aligned_cols=378 Identities=18% Similarity=0.183 Sum_probs=317.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
+..+-.+|+.++.+|+|++||++|.++|+..|+.+..|-+++-||...|++++-++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44566678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHH------------------Hhc--------------CCCChHhHHHHHHHHH--------------
Q 002443 128 DEGRLVEAAESYHKA------------------LSA--------------DPSYKPAAECLAIVLT-------------- 161 (921)
Q Consensus 128 ~~g~~~~A~~~~~~a------------------l~~--------------~p~~~~~~~~la~~~~-------------- 161 (921)
..|++++|+....-. ++. .|.-+.+ ..++. |+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~-~fi~s-yf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA-TFIAS-YFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH-HHHHH-HHhhccccccccccCC
Confidence 999999997544211 110 0110000 00000 00
Q ss_pred ------HHHH--HHHHc---CChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 162 ------DLGT--SLKLA---GNTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKA 217 (921)
Q Consensus 162 ------~lg~--~~~~~---g~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (921)
.+.. -.... ..|.+|...+.+..... ..+ +.++...|..++-.|++-.|...++++
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0000 01111 24555666555544321 112 667788889999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC
Q 002443 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297 (921)
Q Consensus 218 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 297 (921)
++++|.....|..++.+|...++.++..+.|.++.+++|+++..++..+++++-++ ++++|+.-|++++.++|
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~-------q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ-------QYEEAIADFQKAISLDP 425 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH-------HHHHHHHHHHHHhhcCh
Confidence 99999999999999999999999999999999999999999988888777777654 99999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHH
Q 002443 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSL 371 (921)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 371 (921)
++.-.+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|.+++++.|. ++..+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 55555
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 372 NNLGVVYT-VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 372 ~~la~~~~-~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
...|.+.. -.+++.+|+.+++++++++|....++..||.+...+|+.++|+++|+++..+--.
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 55555433 3689999999999999999999999999999999999999999999999887544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-27 Score=284.88 Aligned_cols=409 Identities=15% Similarity=0.092 Sum_probs=338.3
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (921)
.+....-....++...|++++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555666677788999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002443 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (921)
+...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.++...+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~--------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN--------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999865 4456777788899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HCCCH---HHHHHHHHHHHHhCCChHHHHHHHHHHHHh-
Q 002443 206 QYDTALGCYEKAALERPMYA-----EAYCNMGVIYK-----NRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTD- 271 (921)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 271 (921)
..++|+..++++.. .|... .....+..++. ..+++ ++|++.++++++..|.++........+...
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 99999999998765 44421 11222222222 22345 789999999997755554433333333333
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH
Q 002443 272 LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD 346 (921)
Q Consensus 272 lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 346 (921)
++.+ ...+++++|+..|+++++..+..+ .+...+|.+|...|++++|+..|+++++.+|.+ ......++.++..
T Consensus 244 l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 3333 456899999999999998864432 244446999999999999999999999988765 4567788888999
Q ss_pred cCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 347 RDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (921)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 411 (921)
.|++++|+..++++.+..|. ...++..++.++...|++++|++.+++++...|++..++..+|.+
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999998762 245778899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHHH
Q 002443 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (921)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 466 (921)
+...|++++|++.++++++++|++..+...+ ++.++..++.+++....++...
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~--a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQ--AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998877654 4566666776666665555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-27 Score=285.20 Aligned_cols=380 Identities=15% Similarity=0.086 Sum_probs=320.7
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (921)
.+.....+..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++..|++.. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 34567779999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHHHH
Q 002443 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLG 198 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la 198 (921)
.++...|++++|+..++++++..|++... +..++.++...+..++|+..++++.. .|+.. .....+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~-------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQY-------PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELV 195 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998776 45567777788999999999987776 54421 1122222
Q ss_pred HHHH-----HcCCH---HHHHHHHHHHHHhCCCCHH-------HHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCChHHHH
Q 002443 199 VVYS-----ELMQY---DTALGCYEKAALERPMYAE-------AYCN-MGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (921)
Q Consensus 199 ~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (921)
.++. ..+++ ++|+..++++++..|.++. +... ++ .+...|++++|+..|+++++..+..+..
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHH-
Confidence 2222 22345 7899999999976443322 2222 33 3467799999999999999886432211
Q ss_pred HHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------
Q 002443 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------ 332 (921)
Q Consensus 263 ~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 332 (921)
+...++.++...|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++.+..|.
T Consensus 274 -----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~ 348 (765)
T PRK10049 274 -----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG 348 (765)
T ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC
Confidence 11113556677889999999999999888765 456777888899999999999999999998762
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002443 333 ---------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (921)
Q Consensus 333 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 403 (921)
...++..++.++...|++++|++.+++++...|.+..++..+|.++...|++++|++.++++++++|++..
T Consensus 349 ~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 349 SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 24577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002443 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
+++.+|.++..+|++++|...++++++.+|+++.+.
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999998553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=259.48 Aligned_cols=395 Identities=19% Similarity=0.249 Sum_probs=326.0
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
..++..+.+|+.+..+|+|++|..+|.++++.++++ .-.++.+|+.++..|+++.|..+|+++++..|++.+....+|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 456778899999999999999999999999988887 7788899999999999999999999999999999999999999
Q ss_pred HHHHcC----CHHHHHHHHHHHHhcCCCChHhHHHHHHH-------------------------------HHHHHHHHHH
Q 002443 125 LYKDEG----RLVEAAESYHKALSADPSYKPAAECLAIV-------------------------------LTDLGTSLKL 169 (921)
Q Consensus 125 ~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~-------------------------------~~~lg~~~~~ 169 (921)
+|...+ ..+.|..+..++++..|.+.+++..++.+ +.++|..++.
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 888775 66788888999998888888887777664 3456677777
Q ss_pred cCChHHHHHHHHHHHhh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002443 170 AGNTQDGIQKYYEALKI-----DPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 170 ~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
.|++.+|...|.+++.. +++ +....|++|.++...++++.|.+.|..+++.+|.+.+++..+|.+....+
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 88888888888877766 111 12357788888888888888888888888888888888888887777778
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH-----
Q 002443 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE----- 312 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----- 312 (921)
+..+|...++.++..+..++.++..++. .+.....+..|.+-|+..++... .++.+...||+++++
T Consensus 545 ~~~ea~~~lk~~l~~d~~np~arsl~G~-------~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDSSNPNARSLLGN-------LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred CcHHHHHHHHHHHhcccCCcHHHHHHHH-------HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 8888888888888888777766655444 34445566666666665554322 355667777887653
Q ss_pred -------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002443 313 -------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (921)
Q Consensus 313 -------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 385 (921)
.+.+++|++.|.++++.+|.|..+-+.+|.++...|++.+|+..|.+..+--.++..+|.|+|.||..+|+|.
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhh
Q 002443 386 AAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (921)
Q Consensus 386 ~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~ 447 (921)
.|++.|+.+++.. .++.+++..||.++...|++.+|.+...+++.+.|.++....|+.+.+.
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 9999999999874 3568999999999999999999999999999999999999999876543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-25 Score=268.21 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=136.8
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002443 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (921)
Q Consensus 42 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (921)
....+....++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..
T Consensus 38 ~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~ 117 (987)
T PRK09782 38 DYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS 117 (987)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 34456788899999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHH---------------------------------HHHHHHHHH
Q 002443 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLK 168 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---------------------------------~~~lg~~~~ 168 (921)
++.+ +++++|+..|+++++.+|++.++...++.. ...+..+|.
T Consensus 118 La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 118 LAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred HHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHH
Confidence 8776 999999999999999999999988777765 122367888
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
.++++++|++.+.++++..|.+......++.+|..
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 89999999999999988877765555545444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=252.26 Aligned_cols=387 Identities=21% Similarity=0.248 Sum_probs=341.8
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (921)
.+.+.-.++-.|.+.+..|+|-.|+.+|++++..+|.. ++....+|.|+..+|+.+.|+..|+++++++|.+..++..|
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 44577889999999999999999999999999998874 56788999999999999999999999999999999999999
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHH
Q 002443 123 GILYKDEG---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPAYYN 196 (921)
Q Consensus 123 a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 196 (921)
|.+-.... .+..+...+.++...++.++.+ +..++..++..|++..+......++..... .++.++.
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~-------l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~ 312 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVA-------LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQ 312 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHH-------HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 98876654 4778999999999999999886 777788888889999999999999887543 3567999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhh
Q 002443 197 LGVVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~ 275 (921)
+|.+|..+|+|++|..+|.++++.++++ .-.++.+|.+|...|+++.|+.+|++.++..|++.+....++.+|...+
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-- 390 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA-- 390 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh--
Confidence 9999999999999999999999999987 7788999999999999999999999999999999998888888777654
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCH
Q 002443 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----NPHCAEACNNLGVIYKDRDNL 350 (921)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~ 350 (921)
......++|..++.++++..|.+.++|..++.++....-+.. +.+|.+|+.+ .+--++.++++|..++..|++
T Consensus 391 -~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 391 -KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred -hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 334567899999999999999999999999999887665555 9999998854 344589999999999999999
Q ss_pred HHHHHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 002443 351 DKAVECYQMALSI-----KPNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (921)
Q Consensus 351 ~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (921)
.+|...|.+|+.. +++. ....+++|.++...++++.|.+.|..++..+|.+..++..+|.+....++..+
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHH
Confidence 9999999999876 2222 23589999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHhhcCCCChhhHhh
Q 002443 421 AIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 421 A~~~~~~al~l~P~~~~a~~~ 441 (921)
|...++.+++.+..+++++.-
T Consensus 549 a~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHH
Confidence 999999999999999998764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-26 Score=239.40 Aligned_cols=389 Identities=21% Similarity=0.229 Sum_probs=333.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002443 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (921)
..+-..++..+..|+|+.|+.+|..++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHH---------HHH-cCC-------hHHHHHHHHHHHhh-----
Q 002443 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS---------LKL-AGN-------TQDGIQKYYEALKI----- 186 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~---------~~~-~g~-------~~~A~~~~~~al~~----- 186 (921)
.|+|++|+..|.+.++.+|++......++.++...... +.. .++ .+.+.....+.+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999999999999988777776665211000 000 000 00011111111100
Q ss_pred ------------------------------------CCC---------------------CHHHHHHHHHHHHHcCCHHH
Q 002443 187 ------------------------------------DPH---------------------YAPAYYNLGVVYSELMQYDT 209 (921)
Q Consensus 187 ------------------------------------~p~---------------------~~~~~~~la~~~~~~g~~~~ 209 (921)
.|. .......+|...++..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 110 02345678999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHH
Q 002443 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (921)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~ 289 (921)
|++.|.++++++ .+...+.+.+-+|+..|.+.+.+....++++...........++.++..+|..+...++++.++.+|
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 999999999999 8889999999999999999999999999999887777777788999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002443 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (921)
Q Consensus 290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (921)
++++..... ..+....+..++++...+...-++|.-..--...|..++..|+|..|+..|.++++.+|+++.
T Consensus 322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 998876554 556667778888888888888889988888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHh
Q 002443 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~ 446 (921)
.|.+.|.||.++|++..|++..+++++++|+....|...|.++..+.+|++|.+.|+++++++|++.++.....-++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876654433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-24 Score=255.62 Aligned_cols=372 Identities=15% Similarity=0.072 Sum_probs=191.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002443 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (921)
Q Consensus 51 ~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (921)
.+..+..+..+++++.|+++ +...|.+.. ....-......+.+.+|....+...+..|.+...+..++....+.|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 316 VGATLPVLLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 33445555666666544433 223444432 2112222223355555555555555555556666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCC---hHhHHHHHHHHHHHHH--------HH----------HHcCChHH---HHHHHHHHHhh
Q 002443 131 RLVEAAESYHKALSADPSY---KPAAECLAIVLTDLGT--------SL----------KLAGNTQD---GIQKYYEALKI 186 (921)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~lg~--------~~----------~~~g~~~~---A~~~~~~al~~ 186 (921)
++++|...|+++....++- ......++.++...+. .+ .-.|+..+ +...+.+++..
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 6666666666555532211 0111122222221100 01 11333322 33333444444
Q ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHH
Q 002443 187 DPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (921)
Q Consensus 187 ~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (921)
.|. ++.+++++|.++.. +++++|+..+.+++...|++. ....+|.++...|++++|+..|++++...|... .+..
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~ 547 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLA 547 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHH
Confidence 444 55566666655555 555556665555555555432 234444555556666666666665554433322 2334
Q ss_pred HHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002443 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344 (921)
Q Consensus 265 la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 344 (921)
++.++.. .|++++|+.+++++++..|.....+..++......|++++|+..|+++++.+|+ ..++.++|.++
T Consensus 548 la~all~-------~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l 619 (987)
T PRK09782 548 AANTAQA-------AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY 619 (987)
T ss_pred HHHHHHH-------CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 4443333 345556666666666555555555555554445556666666666666666654 55556666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (921)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (921)
.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhcCCCChhh
Q 002443 425 YEQCLKIDPDSRNA 438 (921)
Q Consensus 425 ~~~al~l~P~~~~a 438 (921)
|+++++++|++...
T Consensus 700 l~~Al~l~P~~a~i 713 (987)
T PRK09782 700 ARLVIDDIDNQALI 713 (987)
T ss_pred HHHHHhcCCCCchh
Confidence 66666666655433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=219.80 Aligned_cols=358 Identities=20% Similarity=0.197 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHH
Q 002443 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (921)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (921)
..+-.+|.-++..|+|++|+++|.+++++.|+.+..|.+++-+|...|++++.++...++++++|++..+ ++.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~R 188 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLR 188 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHH
Confidence 3456778889999999999999999999999999999999999999999999999999999999998776 555
Q ss_pred HHHHHHHcCChHHHHHHH------------------HHHHhh--------------CCCCH-------------------
Q 002443 163 LGTSLKLAGNTQDGIQKY------------------YEALKI--------------DPHYA------------------- 191 (921)
Q Consensus 163 lg~~~~~~g~~~~A~~~~------------------~~al~~--------------~p~~~------------------- 191 (921)
.+..+...|++.+|+.-. ++.++. .|.-+
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 555555566666665432 111111 11111
Q ss_pred --------HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHCCCHHHHHHH
Q 002443 192 --------PAYYNLGVVYSELM---QYDTALGCYEKAALER----PMY---------AEAYCNMGVIYKNRGDLESAIAC 247 (921)
Q Consensus 192 --------~~~~~la~~~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~ 247 (921)
++-..-+.-+...+ .|.+|...+.+..... ..+ ..++...|..++-.|+...|...
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 11111111111222 4666666666654321 112 56788888899999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002443 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (921)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (921)
|+++++++|.+... |..++.+|...++.++....|.++..++|+++++|+..|.+++-++++++|+.-|++++
T Consensus 349 ~~~~I~l~~~~~~l-------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSL-------YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred HHHHHhcCcccchH-------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987654 45556666667899999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 002443 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------Y 401 (921)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~------~ 401 (921)
+++|++...+..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|++++++.|. +
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHH
Q 002443 402 AEAYNNLGVLYR-DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (921)
Q Consensus 402 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~ 456 (921)
+..+...|.+.. -.+++..|++.+++|+++||....+...+ +..-+..+..++
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl--aq~~lQ~~~i~e 555 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL--AQFELQRGKIDE 555 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH--HHHHHHHhhHHH
Confidence 555555544432 34899999999999999999998887664 333334444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-23 Score=220.98 Aligned_cols=389 Identities=21% Similarity=0.230 Sum_probs=325.9
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHhCCCC----
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN---- 115 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~---- 115 (921)
.++...+.+|++++-.++|..|..+...- ..+..+..+.+..+.|+....++++|+..+... +..+|.+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 67888899999999999999998887764 556677888999999999999999999888732 1111211
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHH---------------------
Q 002443 116 ---------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV--------------------- 159 (921)
Q Consensus 116 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--------------------- 159 (921)
....+..|.+|....+.++|...|.+++..+....++...+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 23456778889999999999999999988877765543333221
Q ss_pred -----------------------------------------HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002443 160 -----------------------------------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (921)
Q Consensus 160 -----------------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (921)
+...+..++..+++.+..+..+..++.+|-+...+-..-
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 112344566667778888888888888887766665544
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhh
Q 002443 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (921)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~ 278 (921)
-++.++|+..+-...-.+.++..|+.+-.|+..|..|...|++.+|..+|.++..++|.+..+|...+..+. .
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-------~ 358 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-------G 358 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-------h
Confidence 488888888887777788888899999999999999999999999999999999999999887766655544 4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (921)
++..++|+..|..|-++.|........+|.-|...++++.|.++|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 67999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002443 359 MALSIKP-------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 359 ~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
+++..-+ .-...+.+||.++.+++++++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|.+
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9994321 124468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHhhH
Q 002443 432 DPDSRNAGQNR 442 (921)
Q Consensus 432 ~P~~~~a~~~~ 442 (921)
+|++..+..-+
T Consensus 519 ~p~n~~~~~lL 529 (611)
T KOG1173|consen 519 KPDNIFISELL 529 (611)
T ss_pred CCccHHHHHHH
Confidence 99997665443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=235.77 Aligned_cols=307 Identities=20% Similarity=0.278 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002443 117 CAHTHCGILYKD--EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (921)
Q Consensus 117 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (921)
..+..+|..|.. +-+..+|+..|++.-...++.. .++..+|..|+.+++|++|.++|+.+-++.|-..+..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~-------wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG-------WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 345556655544 4567899999999555555543 4578889999999999999999999999999877666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhh
Q 002443 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (921)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 274 (921)
-....++..+.+--+---+.+..++.+|+.++.|..+|.+|.-+++++.|+++|+++++++|.+. .+|..+|.
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-------YayTLlGh 463 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-------YAYTLLGH 463 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-------hhhhhcCC
Confidence 66677777766655555556677889999999999999999999999999999999999999875 34556677
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (921)
Q Consensus 275 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 354 (921)
-+....++++|..+|++++..+|.+..+|+.+|.+|.++++++.|+-+|++|++++|.+......+|.++.+.|+.++|+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
.+|++|+.++|.++-..+..|.+++..+++++|+..+++..++.|+...+++.+|.+|.++|+.+.|+..|.-|.+++|.
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Chh
Q 002443 435 SRN 437 (921)
Q Consensus 435 ~~~ 437 (921)
-.+
T Consensus 624 g~~ 626 (638)
T KOG1126|consen 624 GAQ 626 (638)
T ss_pred cch
Confidence 655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=210.68 Aligned_cols=368 Identities=17% Similarity=0.152 Sum_probs=248.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGI 124 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 124 (921)
++--++..|.++.+.|...+|++.|..++...|-+..+|..++.+... ++........-| .+.-.-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 344455556666666666666666666666666666666666555322 111222222222 22223344455
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 125 LYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
++....+.++++.-++..... .|.+... -...|.+.....++++|+..|+.+.+.+|-..+-.-...++++-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 555556666666666666665 4444332 23344555556777777777777777777665555555666665
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHH
Q 002443 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~ 283 (921)
.++-.+---..+.+.+++.-.++....+|+.|.-.++.++|+.+|+++++++|+...+|..++. -|..+++..
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGH-------EyvEmKNt~ 381 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGH-------EYVEMKNTH 381 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhH-------HHHHhcccH
Confidence 5555554455555666666667777777788888888888888888888888877655544443 344456778
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002443 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (921)
Q Consensus 284 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (921)
.|++.|++|++++|.+..+|+.+|++|..++...=|+-+|+++.+..|++...|..||.+|.+.++.++|+++|.+++..
T Consensus 382 AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 382 AAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002443 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 364 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
...+..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+.-+.+.+++++|..+..+++.-++.-
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 777777888888888888888888888888777 345556666778888888888888888777777664443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-22 Score=233.86 Aligned_cols=394 Identities=12% Similarity=0.018 Sum_probs=295.7
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (921)
.+..++..+..+...+++|++++|+..|+++++.+|.++.+...++.++...|+.++|+.++++++.-.|.....+..+|
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34477889999999999999999999999999999999755558888889999999999999999943444555555558
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
.++..+|++++|++.|+++++.+|+++.. +..++..+...++.++|++.++++...+|..... ..++.++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 89999999999999999999999999776 4456777788899999999999999999986554 556667766
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------------------
Q 002443 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER--------------------------------- 250 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------------- 250 (921)
.++..+|++.++++++.+|++.+++..+..++...|-...|.+..++
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 78887899999999999999999988888887777766555554432
Q ss_pred ---------------HHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Q 002443 251 ---------------CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-YADAMYNLGVAYGEML 314 (921)
Q Consensus 251 ---------------al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g 314 (921)
.+...+..+........+....--.+...+++.+++..|+.+...... -..+....|..|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 222111111111111112222222344566777788877776654422 3346667788888888
Q ss_pred ChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------CCHHHHHH
Q 002443 315 KFDMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLNN 373 (921)
Q Consensus 315 ~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~ 373 (921)
+.++|+.+|++++.-.+ ........|...|...+++++|..++++..+..| +..++...
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 88888888888776542 2333346677777888888888888888776433 33456677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHH
Q 002443 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (921)
Q Consensus 374 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a 445 (921)
++.++...|++.+|++.+++.+...|.+..+...+|.++...|++.+|.+.+++++.++|++..+......+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 778888888888888888888888888888888888888888888888888888888888877776665433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-23 Score=203.94 Aligned_cols=327 Identities=19% Similarity=0.226 Sum_probs=255.1
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (921)
.+.+++..+.+|..++..|++.+|+..|..+++.+|++..+++..|.+|..+|+-.-|+..+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHh---HHHHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002443 124 ILYKDEGRLVEAAESYHKALSADPSYKPA---AECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (921)
.+++++|++++|...|+++++.+|++... ...++. .+......+...|+...|+....+.+++.|-++..+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999965433 222222 2334455667789999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHH---HH--H
Q 002443 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI---AL--T 270 (921)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---~~--~ 270 (921)
..+.||...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+..+-. +- .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997643221110 00 0
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (921)
Q Consensus 271 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (921)
.-.......+++.++++..++.++.+|..+. ....+..++..-+++.+|++.+.++++++|++..++...+..|..
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1112223345555566666666655555322 233345555555566666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHH
Q 002443 347 RDNLDKAVECYQMALSIKPNFSQS 370 (921)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~~~~ 370 (921)
...|+.|+..|++|.+.++++..+
T Consensus 354 dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hHHHHHHHHHHHHHHhcCcccHHH
Confidence 666666666666666665555433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-22 Score=225.84 Aligned_cols=377 Identities=15% Similarity=0.126 Sum_probs=294.0
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 45 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
+.+.+.++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++...|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHH
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGV 199 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~ 199 (921)
...++|++++|.-+|.++++.+|.+... .+..+.+|.+.|+...|...|.+++...|.. .......+.
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999998665 6667778888899999999999999999832 223345577
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCChHH---------------
Q 002443 200 VYSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEI--------------- 260 (921)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~--------------- 260 (921)
.+...++-+.|++.++.++... ....+.+..++.++.....++.|.......... .+++.+
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 8888888899999999999843 234556778899999999999998887665541 111110
Q ss_pred -----HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-C
Q 002443 261 -----AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C 333 (921)
Q Consensus 261 -----~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 333 (921)
.-..+-.+...++.+.....+..+++..+..--...+ +.++.+..++.++...|++.+|+.++..+....+. +
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 0011111334444444455555555555443322223 35678888888888888888888888888776543 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHH
Q 002443 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------AEA 404 (921)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---------~~~ 404 (921)
..+|+.+|.+|..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+++.+.-++.+ ..+
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 67888888888888888888888888888888888888888888888888888888888766333222 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 405 YNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
......++...|+.++=+..-...
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 677778888888887744443333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-21 Score=203.63 Aligned_cols=374 Identities=19% Similarity=0.185 Sum_probs=269.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH-------------------HHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR-------------------LAFDSFSE 107 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~ 107 (921)
.....+.+|..++..+.|+.|.-.++.... ....+..-.+.+..|..+ ..+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345577889999999999999888877643 222222222222222211 12222222
Q ss_pred HHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHH---------------------
Q 002443 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD--------------------- 162 (921)
Q Consensus 108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------- 162 (921)
-++. ...+...++..|.++.+.|....|+..+..++...|-+-.+|..+..+...
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 2221 234577888999999999999999999999999999988887666543221
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 002443 163 -LGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (921)
Q Consensus 163 -lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (921)
++.++....+.++++..++..... .|.+...-...|.+.+.+.++++|+..|+.+.+.+|-..+-.-...++++-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 222333333444444444444444 444444445555555555555555555555555555444333334444433333
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002443 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 320 (921)
-.+---.-+.+..++.--++ ...-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 312 ~skLs~LA~~v~~idKyR~E-------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPE-------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhccCCcc-------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 22222222233333222111 12235666777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002443 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
..|++|++++|.+..+|+.+|+.|.-++...=|+-+|++|.+..|++...|..||.||.+.++.++|+++|++++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002443 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
+..++..||.+|.++++.++|..+|++.++..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999843
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-24 Score=230.17 Aligned_cols=306 Identities=20% Similarity=0.213 Sum_probs=257.4
Q ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 002443 84 AHIGKGICLQ--MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (921)
Q Consensus 84 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (921)
.+..+|..|. .+-+..+|+..|++.-...++...++..+|..|+.+++|++|.++|+.+-+..|-..+....+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 3444444444 34456788888888666777777888888999999999999999998888888876655444444444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 002443 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (921)
.+ .+--+--...+..++.+|+.++.|..+|.||.-+++++.|+++|+++++++|....+|..+|.-+.....+
T Consensus 399 HL-------q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 399 HL-------QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HH-------HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH
Confidence 44 22222223345667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002443 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (921)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 321 (921)
++|..+|++++..+|.+..+|+ -+|.+|.++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.
T Consensus 472 d~a~~~fr~Al~~~~rhYnAwY-------GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRHYNAWY-------GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HhHHHHHHhhhcCCchhhHHHH-------hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH
Confidence 9999999999999998876554 455666667899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002443 322 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (921)
Q Consensus 322 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 401 (921)
+|++|+.++|.++-..+..|.+++..+++++|+..+++..++-|+...++..+|.+|.+.|+.+.|+..|.-|..++|.-
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HH
Q 002443 402 AE 403 (921)
Q Consensus 402 ~~ 403 (921)
..
T Consensus 625 ~~ 626 (638)
T KOG1126|consen 625 AQ 626 (638)
T ss_pred ch
Confidence 44
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=226.79 Aligned_cols=308 Identities=20% Similarity=0.174 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHH
Q 002443 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (921)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (921)
...+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.... ..
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~------ 106 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE---QR------ 106 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH---HH------
Confidence 444555666666666667777777776666666666666666666666666666666666553221111 01
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Q 002443 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (921)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 242 (921)
..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 107 ----------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 158 (389)
T PRK11788 107 ----------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ 158 (389)
T ss_pred ----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH
Confidence 1234555555556666666666666665555555556666666666666666
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002443 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (921)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 322 (921)
+|++.++++++..|..... ..+..+..++..+...+++++|+.+++++++..|+...++..+|.++...|++++|+..
T Consensus 159 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666555443211 12223444555555566667777777777666666677777778888888888888888
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002443 323 YELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (921)
Q Consensus 323 ~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 401 (921)
++++++.+|.+ ..++..++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..++++++..|++
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 88887777665 455677778888888888888888888887776643 3777888888888888888888888888876
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHhh
Q 002443 402 AEAYNNLGVLYRD--AGSISLAIDAYEQCLK 430 (921)
Q Consensus 402 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 430 (921)
......++..+.. .|+..+|+..+++.++
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 6554444433322 3467777766665553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-22 Score=223.82 Aligned_cols=302 Identities=16% Similarity=0.122 Sum_probs=234.4
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTH 121 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 121 (921)
......+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..+.. ..++..
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4556677789999999999999999999999999999999999999999999999999999998854332 356788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHH
Q 002443 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYN 196 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~ 196 (921)
+|.+|...|++++|+..|+++++..|.+.. ++..++.++...|++++|++.++++++..|... ..+..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEG-------ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHH-------HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 899999999999999999999988776543 377788888888999999999988888776642 24567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhh
Q 002443 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 276 (921)
+|.++...|++++|+..|+++++..|+...++..+|.++...|++++|++.++++++..|.+.
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------- 248 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------- 248 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------
Confidence 788888888888888888888888888888888888888888888888888888777655431
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (921)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (921)
..++..++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..
T Consensus 249 -----------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 249 -----------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHH
Confidence 123445566777777777777777777777776543 37778888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 002443 357 YQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAI 395 (921)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~al 395 (921)
++++++..|++......++..+.. .|+.++|+..+++.+
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 888888877766544444333322 346667766666544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-22 Score=203.55 Aligned_cols=385 Identities=18% Similarity=0.186 Sum_probs=314.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 50 DALSYANILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 50 ~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
.-...|++++++.+|.+|+++|+-++..-|. ...++.++|..+.+.|+|+.|+..|+.+.+..|+...+ +++..
T Consensus 239 lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~-~nl~i 317 (840)
T KOG2003|consen 239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA-LNLII 317 (840)
T ss_pred eeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh-hhhhh
Confidence 3345677778888888888888888887765 23567778888888888888888888888888866544 46667
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC----------CCChHhHHHHHH------------------------------------
Q 002443 125 LYKDEGRLVEAAESYHKALSAD----------PSYKPAAECLAI------------------------------------ 158 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~----------p~~~~~~~~la~------------------------------------ 158 (921)
+++..|+-++-.+.|.+.+.+- +++......+..
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 7888888888888888887641 111000000000
Q ss_pred -----------------------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc--CCHHHHHH
Q 002443 159 -----------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSEL--MQYDTALG 212 (921)
Q Consensus 159 -----------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~ 212 (921)
+-.+.+..+.+.|+++.|++.++-.-+.+... ..+-.+|..+++.+ .++.+|..
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 01123445677888888888876554444332 23445566555553 46888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHH
Q 002443 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (921)
Q Consensus 213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~a 292 (921)
+...++.++.-++.++.+.|.+.+..|++++|.+.|++++..+..-. .+++++|..+...|++++|+++|-+.
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-------ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-------EALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-------HHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999998766544 45666777777788999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002443 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372 (921)
Q Consensus 293 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 372 (921)
-.+--++.++++.++.+|..+.+..+|++++.++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+...
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002443 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 373 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
.||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-...|++.+...-+
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=207.92 Aligned_cols=409 Identities=20% Similarity=0.228 Sum_probs=303.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAH 119 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 119 (921)
.-..++.+|..|..+..+.+|+..|+-+++. .|+....-.++|.+++++.+|.+|+++|+.++..-|.- ..++
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3457888999999999999999999987753 57777778899999999999999999999999987752 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------------
Q 002443 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------------- 186 (921)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 186 (921)
.++|..+.+.|+|+.|+..|+.+++..|+...+ +++..+++..|+-++-.+.|.+.+.+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~--------~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA--------LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhh--------hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 889999999999999999999999999986543 45566777778888888888888765
Q ss_pred -CCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHh-----CCC--------------------CHHHHHHHHHHH
Q 002443 187 -DPHYAPAYYNLGV-----VYSELMQYDTALGCYEKAALE-----RPM--------------------YAEAYCNMGVIY 235 (921)
Q Consensus 187 -~p~~~~~~~~la~-----~~~~~g~~~~A~~~~~~al~~-----~p~--------------------~~~~~~~la~~~ 235 (921)
+|++ .+.+-+. -.+...+-..|.++.-.+.++ .|+ -.+.-.+.+-.+
T Consensus 352 ddp~~--~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 352 DDPDD--NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CCcch--HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 1111 1111110 001111122222222222111 111 112334455556
Q ss_pred HHCCCHHHHHHHHHHHHHhCCChHH-HHHHH-----------------------------HHHHHhhhhhhhhcCCHHHH
Q 002443 236 KNRGDLESAIACYERCLAVSPNFEI-AKNNM-----------------------------AIALTDLGTKVKLEGDINQG 285 (921)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l-----------------------------a~~~~~lg~~~~~~~~~~~A 285 (921)
++.|+++.|++.++-.-+.+..... +..++ +.++.+.|++.+..|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 6666666666655443333222111 11111 12234455666678899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002443 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.+++..++.+|..+.+..+|+++|.++..+-|
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip 589 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP 589 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC
Confidence 99999999888888889999999999999999999999888888888889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHH
Q 002443 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (921)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a 445 (921)
+++.++..||.+|-+.|+..+|.+++-......|.+.+...+||..|....-.++|+.+|+++--+.|+- ..+.++.+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~--~kwqlmia 667 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ--SKWQLMIA 667 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH--HHHHHHHH
Confidence 9999999999999999999999999988888899999999999999999989999999999998888863 34555666
Q ss_pred hhhccCCChHHHHHHHHHHHHH
Q 002443 446 MNYINEGHDDKLFEAHRDWGKR 467 (921)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (921)
..+-..|+..+.++.++...+.
T Consensus 668 sc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHh
Confidence 6777778888888776654443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-20 Score=220.07 Aligned_cols=374 Identities=13% Similarity=0.012 Sum_probs=304.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002443 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (921)
Q Consensus 52 l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (921)
..++.++...|++++|+.++++++...|.....+..+|.++..+|++++|++.|+++++.+|+++.++..++.++...++
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 37778888889999999999999944455566666668899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (921)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (921)
.++|++.++++...+|.+... ..++.++...++..+|++.++++++.+|++..++..+..++...|-...|+
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~--------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY--------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH--------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999984332 223444444677777999999999999999998888877777766655444
Q ss_pred HHH------------------------------------------------HHHHHh---CCCC----HHHHHHHHHHHH
Q 002443 212 GCY------------------------------------------------EKAALE---RPMY----AEAYCNMGVIYK 236 (921)
Q Consensus 212 ~~~------------------------------------------------~~al~~---~p~~----~~~~~~la~~~~ 236 (921)
+.. ++.+.. .|.. ..+....-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 433 333332 2221 223334455677
Q ss_pred HCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHH
Q 002443 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAY 310 (921)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~ 310 (921)
..+++.++++.|+.+......-+ ..+....+..|...++.++|+.+|++++...+ ........|...+
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P------~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMP------DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCC------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 88999999999998775442211 11233456666668899999999999987653 2334457888999
Q ss_pred HHcCChHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002443 311 GEMLKFDMAIVFYELAFHFNP---------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375 (921)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 375 (921)
...+++++|..++++..+..| +..++...++.++...|++.+|++.+++.+...|.+..++..+|
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999988533 33677888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002443 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 376 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
.++...|.+.+|+..++.+..++|++..+...+|.++..+|++.+|....+++++..|+++...
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-20 Score=204.92 Aligned_cols=390 Identities=15% Similarity=0.129 Sum_probs=320.1
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (921)
++...+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+..+++.+... |+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4566666777888889999999999999998877888999999999999999999999999999988 77777766666
Q ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCCH
Q 002443 124 I-LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYA 191 (921)
Q Consensus 124 ~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~ 191 (921)
. ++.+.+.+++++.+..+++.... .......+..+..+|.+|..+ ....++++.++++++.+|+++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4 55677999999999999998552 222233455566666665432 235689999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 002443 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 270 (921)
.+.+.++.-|..+++.+.|+.+.+++++. ..+++.+|..++.++...+++.+|+...+.++...+++.........+-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 99999999999999999999999999999 55678999999999999999999999999999988874322111111100
Q ss_pred h------------------------------------hhhhhhhcCCHHHHHHHHHHHHHh--------C-----C----
Q 002443 271 D------------------------------------LGTKVKLEGDINQGVAYYKKALYY--------N-----W---- 297 (921)
Q Consensus 271 ~------------------------------------lg~~~~~~~~~~~A~~~~~~al~~--------~-----~---- 297 (921)
. .+.......+..+|+..++++... + |
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 0 011111222344444444443322 0 1
Q ss_pred ----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002443 298 ----HY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (921)
Q Consensus 298 ----~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 368 (921)
.. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.++|++.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 11 135678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002443 369 QSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~--~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
.+...+|.++.+.|+..-|.. .+..+++++|.+.++|+.+|.++.++|+.++|.++|..++++.+.+|-
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999888888 999999999999999999999999999999999999999999998763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-21 Score=191.59 Aligned_cols=328 Identities=16% Similarity=0.168 Sum_probs=240.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHH
Q 002443 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (921)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (921)
+|.+++-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-..|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 556778899999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002443 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYY------------NLGVVYSELMQYDTALGCYEKAALERP 222 (921)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p 222 (921)
-...|.++.++|++++|..-|+++++.+|++. +++. .....+...|++..|+....+.+++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 55678888899999999999999999998642 2222 223345567888899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 002443 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (921)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 302 (921)
-+...+...+.+|...|+...|+.-++.+-++..++.+..+.++.+++.+| +.+.++...+++++++|+....
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg-------d~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG-------DAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh-------hHHHHHHHHHHHHccCcchhhH
Confidence 888888889999999999999999999888888888877777777777654 7788888888888888886544
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHH
Q 002443 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVY 378 (921)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~ 378 (921)
+-. |.++.+..+.+... .-....++|.++++..++.++.+|..+. ....+..|+
T Consensus 260 f~~----YKklkKv~K~les~------------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 260 FPF----YKKLKKVVKSLESA------------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHH----HHHHHHHHHHHHHH------------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 322 11111111111111 1122345556666666666666655322 233345555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhh
Q 002443 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 379 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
...+++.+|+..+.++++.+|++.+++...|.+|.....|+.|+..|++|.++++++..+...
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 556666666666666666666666666666666666666666666666666666666555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-20 Score=198.84 Aligned_cols=350 Identities=18% Similarity=0.233 Sum_probs=293.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-----------------CHHHHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----------------MGRLAFDSFSEAV 109 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~~~~A~~~~~~al 109 (921)
+....+.+|++|....++++|...|.+++..++.+.+++..+-...+..- ...+-++.+-++.
T Consensus 140 essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~ 219 (611)
T KOG1173|consen 140 ESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELK 219 (611)
T ss_pred hhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhh
Confidence 45667788999999999999999999999999988777655543332211 1111111111111
Q ss_pred H----------hCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcC
Q 002443 110 K----------LDP--------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171 (921)
Q Consensus 110 ~----------~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g 171 (921)
. ..+ ++.+.....+..++..+++.+..+.++..++.+|-+.+.. -..+| ++...|
T Consensus 220 ~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~------~~~ia-~l~el~ 292 (611)
T KOG1173|consen 220 LCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCL------PLHIA-CLYELG 292 (611)
T ss_pred hhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchH------HHHHH-HHHHhc
Confidence 0 011 3567788889999999999999999999999999887753 23444 667778
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002443 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (921)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (921)
+..+-...-.+.++..|+.+..|+..|..|...|++.+|..+|.|+..++|....+|...|..+...|..++|+.+|..|
T Consensus 293 ~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred ccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-
Q 002443 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN- 330 (921)
Q Consensus 252 l~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 330 (921)
-++.|........ +|.-|...++++.|..+|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-
T Consensus 373 arl~~G~hlP~LY-------lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 373 ARLMPGCHLPSLY-------LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHhccCCcchHHH-------HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 9998876544333 44455557899999999999999999999999999999999999999999999999542
Q ss_pred ---CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002443 331 ---PH---CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (921)
Q Consensus 331 ---p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 404 (921)
++ -...+.+||.++.+.+++++|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.++|++.-+
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 11 245689999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred HHHHHH
Q 002443 405 YNNLGV 410 (921)
Q Consensus 405 ~~~la~ 410 (921)
-..|+.
T Consensus 526 ~~lL~~ 531 (611)
T KOG1173|consen 526 SELLKL 531 (611)
T ss_pred HHHHHH
Confidence 555553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-19 Score=191.85 Aligned_cols=372 Identities=13% Similarity=0.054 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002443 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (921)
..|+.-|..+.+.+-++-|..+|..+++.+|.....|...+..-...|..++-..+|++++...|.....|...+..+..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002443 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (921)
.|+...|...+.++++.+|++.+. +..--.+.....+++.|...|.++....|. ..+|+.-+.+...+++.+
T Consensus 597 agdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVE 668 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHH
Confidence 555555555555555555554443 222222333445555555555555544332 344455555555555555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHH
Q 002443 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (921)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~ 288 (921)
+|+.+++.+++..|+....|..+|+++.++++.+.|.+.|...++..|.....+..++ .+....|...+|..+
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa-------kleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA-------KLEEKDGQLVRARSI 741 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH-------HHHHHhcchhhHHHH
Confidence 5555555555555555555555555555555555555555555555555544333322 222333455555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002443 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (921)
Q Consensus 289 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 368 (921)
++++.-.+|++...|.....+-.+.|+.++|.....++++..|++...|..-..+.-.-++-.+++..+ +....++
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL----kkce~dp 817 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL----KKCEHDP 817 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH----HhccCCc
Confidence 555555555555555555555555555555555555555555555555544444433333333333322 2234445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002443 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
.++...|..+....++++|.++|.++++.+|++.++|...-..+...|.-++-.+.|.++....|.+...+
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 55555555555555556666666666655555555555555555555555555555555555555554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-19 Score=200.51 Aligned_cols=338 Identities=15% Similarity=0.130 Sum_probs=272.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 002443 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (921)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (921)
...++..|..++..|++++|...+.++++.+|.++.+|+.||.+|.++|+.+++...+-.|-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 45677888889999999999999999999999999999999999999999999999999999999999876 66
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 002443 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 236 (921)
.++....++|++++|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. .......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 677777788999999999999999999999999999999999999999999999999999832 233445577788
Q ss_pred HCCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh--CCC--------------
Q 002443 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--NWH-------------- 298 (921)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~~-------------- 298 (921)
..++-+.|++.++.++....+ ..+.... ++.++.+...++.|.......... .++
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni-------~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNI-------LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHH-------HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 888889999999999883222 1122222 233344455677776665544430 000
Q ss_pred ------------CHHH-HHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002443 299 ------------YADA-MYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (921)
Q Consensus 299 ------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (921)
+..+ ...++.+..+..+..+++..+..--...+ +..+.+..++.+|...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1122 44445455555555555555443333223 458899999999999999999999999998876
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002443 365 PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 365 p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.+|..+|+.++|.+.+++...-++
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 54 4679999999999999999999999999999999999999999999999999999999999874443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-18 Score=187.44 Aligned_cols=380 Identities=13% Similarity=0.050 Sum_probs=314.9
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------------------
Q 002443 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------- 112 (921)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------- 112 (921)
+..-|+.|.+.+.++-+.-|.+.++|..-+..-...|+.+.-.++..+.+..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 34568888888888888888888888888888888888777666666655321
Q ss_pred ---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHH
Q 002443 113 ---------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (921)
Q Consensus 113 ---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~ 177 (921)
.+.-..|..-+..+...+.++-|...|..+++..|..... +...+..-..-|..++-.
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLE 570 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHH
Confidence 0112344555666677777788888888888888876654 333444444557888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 002443 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (921)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 257 (921)
..+++++..-|.....|...+..+...|+...|..++.++++.+|++.++|+....+.....+++.|..+|.++....|.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 88899999889888888888999999999999999999999999999899988888888999999999999998887776
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002443 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (921)
Q Consensus 258 ~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 337 (921)
. .+++.-..+...+++.++|+.+++++++..|+....|..+|.++..+++.+.|...|...++..|.++..|
T Consensus 651 e--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 651 E--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred c--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 3 34444445555577999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------
Q 002443 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------- 401 (921)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---------------- 401 (921)
..++.+-.+.|+.-+|...++++.-.+|.+...|.....+-.+.|+.++|.....+|++..|++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999987754
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHH
Q 002443 402 --------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (921)
Q Consensus 402 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~ 456 (921)
+.++...|.++....++++|.+.|+++++++|++.+++..+ --.++..|..++
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f--ykfel~hG~eed 869 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF--YKFELRHGTEED 869 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH--HHHHHHhCCHHH
Confidence 45677889999999999999999999999999999998763 233445554443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-19 Score=181.68 Aligned_cols=384 Identities=14% Similarity=0.105 Sum_probs=314.4
Q ss_pred cCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------
Q 002443 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD---------- 112 (921)
Q Consensus 43 ~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------- 112 (921)
....+.+.-...+.+|...++-++|+....++.... ..+.....++..+-.-++..++.-.+...+...
T Consensus 92 ~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~l 170 (564)
T KOG1174|consen 92 PEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEAL 170 (564)
T ss_pred CCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHH
Confidence 344578888999999999999999999877654321 234455555555555555445444444433322
Q ss_pred ---------------------CCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHH
Q 002443 113 ---------------------PQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (921)
Q Consensus 113 ---------------------p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (921)
|...+.+ ..++.++....-+.-+..++-.-....|++... +..+|.+++
T Consensus 171 l~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-------l~~lak~~~ 243 (564)
T KOG1174|consen 171 LELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-------MMALGKCLY 243 (564)
T ss_pred HHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-------HHHHhhhhh
Confidence 2222222 223333333344444555555666667776553 778899999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002443 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (921)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (921)
..|++.+|+..|+++..++|......-..|.++...|++++-.......+.+......-|+--+...+..++++.|+.+-
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002443 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (921)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 328 (921)
+++++.+|.+..++...+.++.. .++.++|+-.|+.+..+.|...+.|..|..+|...|++.+|...-+.+++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~-------~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIA-------LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHHhccCcccchHHHhccHHHHh-------ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 99999999998776665555555 56999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002443 329 FNPHCAEACNNLG-VIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (921)
Q Consensus 329 ~~p~~~~~~~~la-~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 406 (921)
..|.++.++..+| .++ ..-.--++|.++++++++++|....+-..+|.++...|.+++++..+++.+...|+ ...+.
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~ 475 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHN 475 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHH
Confidence 9999999999886 443 34445689999999999999999999999999999999999999999999999987 57899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002443 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
.||.++...+.+++|.++|..|+.++|++..+...+
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 999999999999999999999999999998776553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=191.99 Aligned_cols=364 Identities=19% Similarity=0.169 Sum_probs=296.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
.-.+-.....|...|+|++|++--.+.++++|.-+..|..+|..++-+|+|++|+..|.+.++.+|++...+..++.++.
T Consensus 36 hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~ 115 (539)
T KOG0548|consen 36 HVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYL 115 (539)
T ss_pred cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhh
Confidence 33344556778899999999999999999999999999999999999999999999999999999999998888887763
Q ss_pred HcC---------------------CHHHHHHHHHHHHhcCCCChHh----------------------------------
Q 002443 128 DEG---------------------RLVEAAESYHKALSADPSYKPA---------------------------------- 152 (921)
Q Consensus 128 ~~g---------------------~~~~A~~~~~~al~~~p~~~~~---------------------------------- 152 (921)
... ++-.....|.+.++..+.++..
T Consensus 116 ~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~ 195 (539)
T KOG0548|consen 116 EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILA 195 (539)
T ss_pred HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCC
Confidence 220 0001111122221111111000
Q ss_pred ------------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002443 153 ------------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (921)
Q Consensus 153 ------------------------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (921)
....+.-...+|+..+...++..|++.|.++++++ .+...+.+.+.+|+..|.+.
T Consensus 196 ~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~ 274 (539)
T KOG0548|consen 196 SMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYA 274 (539)
T ss_pred CCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHH
Confidence 11123345678999999999999999999999999 88889999999999999999
Q ss_pred HHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCC
Q 002443 209 TALGCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281 (921)
Q Consensus 209 ~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~ 281 (921)
+++....++++..... ..+...+|..|...++++.|+.+|++++..... .+.......
T Consensus 275 ~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~ 339 (539)
T KOG0548|consen 275 ECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKE 339 (539)
T ss_pred HhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHH
Confidence 9999999988765432 234445677888899999999999998876544 122222346
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002443 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (921)
Q Consensus 282 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (921)
.++++...+.....+|.-..--...|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.+++++..|++..++++
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77888888888888888887788889999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 362 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
+++|++...|...|.++..+.+|++|++.|+++++.+|++.++.-.+..|+..+.......+.+++
T Consensus 420 eL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 420 ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988876444444555555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-16 Score=193.45 Aligned_cols=395 Identities=14% Similarity=0.076 Sum_probs=317.3
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (921)
.+...++..-..+.+.|++++|+++|+++.+.+. .+...+..+...+...|..++|...|+.... | +...|..+-
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHH
Confidence 3456667777778899999999999999887653 2334444556677888999999999887654 4 567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 002443 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYS 202 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 202 (921)
..+.+.|++++|...|+++.+...... ..++..+...|.+.|+.++|.+.|+++.+.... +...|..+...|.
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKAD------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999988654322 224677778888999999999999999876533 6889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhhhhhhh
Q 002443 203 ELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
+.|++++|++.|+++.+..- -+...|..+...|.+.|++++|.+.|+++... .|+. . .|..+...+.
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v-------TynaLI~ay~ 590 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I-------TVGALMKACA 590 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H-------HHHHHHHHHH
Confidence 99999999999999976531 24788999999999999999999999999763 4542 2 3344445566
Q ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 278 LEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAV 354 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~ 354 (921)
+.|++++|.++|+++.+.+ +.+...|..+...|.+.|++++|+.+|+++.+. .| +...|..+...|.+.|++++|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHH
Confidence 6889999999999999876 456788999999999999999999999999876 34 4778999999999999999999
Q ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002443 355 ECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 355 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
++++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|.+.|++..+.
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999864 345789999999999999999999999998764 454 678999999999999999999999988654
Q ss_pred --CCCChhhHhhHHHHhhhccCCChHHHHHHHH
Q 002443 432 --DPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (921)
Q Consensus 432 --~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~ 462 (921)
.|+. ..+..++ ..+...+..+...+.+.
T Consensus 749 Gi~Pd~-~Ty~sLL--~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 749 GLCPNT-ITYSILL--VASERKDDADVGLDLLS 778 (1060)
T ss_pred CCCCCH-HHHHHHH--HHHHHCCCHHHHHHHHH
Confidence 4543 2333322 34445566555554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-18 Score=190.18 Aligned_cols=302 Identities=12% Similarity=0.005 Sum_probs=237.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHH
Q 002443 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNL 197 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l 197 (921)
....|.+....|+++.|.+.+.++.+..|+.... +...|.++...|++++|.+++.++.+..|+.. .+....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 3555677778888888888888888877764433 44556777778888888888888888888764 456667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh
Q 002443 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
+.++...|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+.....+.....+.. ....+ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~--~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAEIG--LL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHH--HH
Confidence 8888899999999999999999999999999999999999999999999988888775443322211111 11111 11
Q ss_pred hcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHH
Q 002443 278 LEGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLD 351 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~ 351 (921)
..+..+++.+.+.++.+..| +++..+..++..+...|++++|++.++++++..|++.... ..........++.+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 22333445567777777666 5899999999999999999999999999999999987532 22333334568899
Q ss_pred HHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 352 KAVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 352 ~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
++++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|+... +..+|.++.++|+.++|.++|++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999 889999999999999999999999 67788887655 66999999999999999999999
Q ss_pred Hhhc
Q 002443 428 CLKI 431 (921)
Q Consensus 428 al~l 431 (921)
++..
T Consensus 396 ~l~~ 399 (409)
T TIGR00540 396 SLGL 399 (409)
T ss_pred HHHH
Confidence 8764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=171.04 Aligned_cols=382 Identities=18% Similarity=0.155 Sum_probs=291.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHH-HHHhC--CCC----
Q 002443 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN---- 115 (921)
Q Consensus 51 ~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~---- 115 (921)
-+-+|..+++...|+...+++..+++..|++..+|..+..++...- +-.+|...++. .+... |..
T Consensus 7 ~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~ 86 (478)
T KOG1129|consen 7 DYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKT 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccC
Confidence 3557888999999999999999999999999999999988875432 22245544432 12111 100
Q ss_pred ---------HH-----------HHHHHHHH-HHHcCCHHHHHHH--------------------------------HHHH
Q 002443 116 ---------AC-----------AHTHCGIL-YKDEGRLVEAAES--------------------------------YHKA 142 (921)
Q Consensus 116 ---------~~-----------~~~~la~~-~~~~g~~~~A~~~--------------------------------~~~a 142 (921)
.. +....... -.+-|-.+.|+.- |-.+
T Consensus 87 p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nl 166 (478)
T KOG1129|consen 87 PFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNL 166 (478)
T ss_pred CCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeeh
Confidence 00 00000000 0111222222211 1111
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 002443 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTALG 212 (921)
Q Consensus 143 l~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~ 212 (921)
-.++|..-.....+...++.. +++..++...|-......++.+ |. +......+|.||+.+|-+.+|.+
T Consensus 167 sRLN~tkYa~~p~l~kaLFey--~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aek 244 (478)
T KOG1129|consen 167 SRLNPTKYAERPTLVKALFEY--LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEK 244 (478)
T ss_pred hhcCchhhccChHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHH
Confidence 222332222222233333332 3444566666665555544431 11 23344679999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHH
Q 002443 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (921)
Q Consensus 213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~a 292 (921)
.++.+++..|. ++.+..++.+|.+..+...|+..+.+.++..|.+......++ .++...+++++|.++|+.+
T Consensus 245 qlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~A-------Ri~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 245 QLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQA-------RIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred HHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhH-------HHHHHHHhHHHHHHHHHHH
Confidence 99999998875 889999999999999999999999999999999876554444 4455567999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH
Q 002443 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQ 369 (921)
Q Consensus 293 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~ 369 (921)
++.+|.+.++...+|.-|+.-++.+-|+.+|++.+++.-.+++.++++|.+++..++++-++..|++++.... .-++
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998743 2367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002443 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
+|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-.+.|+-.+...|+
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999988777764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=194.56 Aligned_cols=375 Identities=20% Similarity=0.176 Sum_probs=301.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (921)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (921)
+++...|+..|-+++.+++..+.++..+|..|...-+...|.++|++|.++++.+..+.-..+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred HHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002443 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (921)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (921)
.+-+..|.... ...+...|..|...++...|+..|+.++..+|++...|..+|.+|...|++..|++.|.++..+
T Consensus 551 ~~~qka~a~~~-----k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 551 RAAQKAPAFAC-----KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhhhchHHHH-----HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 66555554322 1225558889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC----
Q 002443 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---- 296 (921)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---- 296 (921)
+|.+....+..+.+....|+|.+|+..+...+............++.++.+++..+...|-..+|..++++.++..
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888888889999888888887777777777777766431
Q ss_pred ----CCCHHHHHHHHHHHH-------------------H----cCC---h---HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002443 297 ----WHYADAMYNLGVAYG-------------------E----MLK---F---DMAIVFYELAFHFNPHCAEACNNLGVI 343 (921)
Q Consensus 297 ----~~~~~~~~~la~~~~-------------------~----~g~---~---~~A~~~~~~al~~~p~~~~~~~~la~~ 343 (921)
.++...|..++..+. . ++. . --+.+++-..+++.. .+..|+++|..
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGin 784 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGIN 784 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHH
Confidence 122222222222211 0 010 0 123333333333322 25677788877
Q ss_pred HHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 344 YKD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 344 ~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
|+. +.+...|+.++++++++..++...|+.||.+ ...|++.-|..+|-+.+...|.....|.++|.++...
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 765 2344578888888888888888888888887 5668888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002443 416 GSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 416 g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
.+++.|...|.++..++|.+...+...
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGE 890 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence 888888888888888888887665543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-17 Score=187.47 Aligned_cols=303 Identities=12% Similarity=0.012 Sum_probs=191.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGIL 125 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 125 (921)
.+...+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|++++|.++++++.+..|++. .+....+.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3455666777777777888887777777777777667777777777777777778777777777777664 455556777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHH
Q 002443 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVY 201 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~ 201 (921)
+...|++++|...++++++..|+++.+ +..++.++...|++++|++.+.+..+....++..+. ....-+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 777777777777777777777777654 555666666777777777777777766443333221 112222
Q ss_pred HHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh
Q 002443 202 SELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
...+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~------------- 302 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP------------- 302 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-------------
Confidence 333444445556666666665 467777777777777777777777777777777765421100
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHH
Q 002443 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVIYKDRDNLDKAVE 355 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~ 355 (921)
.+ ........++.+.+++.++++++..|+++ ..+..+|.++.+.|++++|.+
T Consensus 303 ----------~l----------------~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 303 ----------LC----------------LPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred ----------HH----------------HHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHH
Confidence 00 11111122344555566666666666666 555566666666666666666
Q ss_pred HHH--HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002443 356 CYQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (921)
Q Consensus 356 ~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 396 (921)
+|+ ++++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus 357 ~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 357 AFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666 35555555433 33666666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=200.93 Aligned_cols=261 Identities=21% Similarity=0.201 Sum_probs=122.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002443 162 DLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
.++.++...|++++|++.+.+.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5588888899999999999766544 488899999999999999999999999999999999988888888888 7999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChH
Q 002443 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFD 317 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~ 317 (921)
++++|+.+++++.+..++ +..+ .....++...++++++...++++.... +.++..+..+|.++.+.|+.+
T Consensus 92 ~~~~A~~~~~~~~~~~~~-~~~l-------~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGD-PRYL-------LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccccc-cchh-------hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999998876643 2222 223344556789999999999977655 678889999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002443 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 318 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
+|+..|+++++.+|++..+...++.++...|+++++.+.++...+..|.++..+..+|.++..+|++++|+.+++++++.
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002443 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 398 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp STT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-17 Score=183.03 Aligned_cols=303 Identities=11% Similarity=0.001 Sum_probs=237.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH-HHHH
Q 002443 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNL 197 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l 197 (921)
.+..|......|++++|.+...+.-+..+. +.. .+...+......|+++.|..++.++.+.+|+.... ....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l------~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVV------NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566777789999888777765554322 221 13334555578899999999999999888887533 3345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHH-HHHHHHhhhhhh
Q 002443 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-MAIALTDLGTKV 276 (921)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~lg~~~ 276 (921)
+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.+..+....+...... ...++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999998888876654433221 112332222222
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (921)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (921)
....+.+...+.++...+..|+++.+...++..+...|+.++|...++++++. +.+......++.+ ..++.+++++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 22344555566666665667789999999999999999999999999999994 4456555555544 44999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002443 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++ ..+..++.++.++|+.++|.++|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999995 456789999999999999999999998764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-16 Score=171.92 Aligned_cols=373 Identities=19% Similarity=0.220 Sum_probs=283.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (921)
....++..+.-.+..++|.+.++..+++++..|++.+.+..+|..+..+|+.++|......++..++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
....+|++|+++|+.|+.+.|+|... +..++....+.++++.....-.+.++..|..-..|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999775 67777777788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhh
Q 002443 207 YDTALGCYEKAALER---PM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (921)
Q Consensus 207 ~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~ 278 (921)
+..|....+...+.. |. ..+.......+..+.|.+++|++.+.+--...-+ .+ ......+.++..
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D------kl-a~~e~ka~l~~k 231 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD------KL-AFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH------HH-HHhhhHHHHHHH
Confidence 999999988877654 32 2345555667777888888887766543221111 11 122334566667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCC----------------HHH-----
Q 002443 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYELAFHFNPHC----------------AEA----- 336 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~----------------~~~----- 336 (921)
.+++++|...|...+..+|++...+..+-.++....+--++. ..|...-+..|.. ...
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 789999999999999999999988888777775333333444 4444443332211 000
Q ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHHHh-------hC------------CCC--HHHHHHHHHHHHHcCCH
Q 002443 337 -----------CNNLGVIYKDRDNLDKAVECYQMALS-------IK------------PNF--SQSLNNLGVVYTVQGKM 384 (921)
Q Consensus 337 -----------~~~la~~~~~~g~~~~A~~~~~~al~-------~~------------p~~--~~~~~~la~~~~~~g~~ 384 (921)
...+-.+| ++..+. ..+++.+. -. |-. ...++.++.-+...|++
T Consensus 312 ~~~l~Kg~p~vf~dl~SLy---k~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~ 387 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLY---KDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY 387 (700)
T ss_pred HHHhhcCCCchhhhhHHHH---hchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence 00011111 111111 12222221 11 111 22456678888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002443 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 385 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
+.|..+++.|+...|+..+.+...|+++...|++++|...++++.++|-.|+.
T Consensus 388 ~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 388 EVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 88888888888888888888888888888888888888888888888765543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=200.85 Aligned_cols=401 Identities=14% Similarity=0.018 Sum_probs=318.5
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
.+...+..+...+...++++.|.+++..+.+.. ..+...+..+...|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~ 197 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIG 197 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHH
Confidence 466777888888888999999999998887642 23577888888999999999999999988753 35667888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChH-----------------------------hHHHHHHHHHHHHHHHHHcCChHH
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKP-----------------------------AAECLAIVLTDLGTSLKLAGNTQD 175 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------------------~~~~la~~~~~lg~~~~~~g~~~~ 175 (921)
.|.+.|++++|++.|+++.+....... ....-..++..+...|.+.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 999999999999999988764321100 000012246677888999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 002443 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (921)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (921)
|.+.|++.. +.+..+|..+...|.+.|++++|++.|+++.+.. .-+..++..+...+.+.|++++|.+.+..+++.
T Consensus 278 A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 278 ARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999998763 4578899999999999999999999999997653 224678999999999999999999999999987
Q ss_pred CC-ChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CC
Q 002443 255 SP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PH 332 (921)
Q Consensus 255 ~p-~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~ 332 (921)
.- .+. .++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|++.|+++.+.. .-
T Consensus 355 g~~~d~-------~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 355 GFPLDI-------VANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred CCCCCe-------eehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 52 222 2344556667778899999999998754 356789999999999999999999999988753 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 410 (921)
+...+..+...+.+.|+.++|.++|+...+... .+...|..+..+|.+.|++++|.+.+++. ...| +..+|..+..
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~ 502 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLT 502 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Confidence 467788899999999999999999999986432 23567889999999999999999998764 2334 3678999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHHH
Q 002443 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (921)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 466 (921)
.+...|+++.|...+++.+++.|++...+.. +.-.|...|..++..+..+....
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~--L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVV--LLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHH--HHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998766543 34467777777776655544433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-15 Score=185.94 Aligned_cols=362 Identities=13% Similarity=0.044 Sum_probs=301.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Q 002443 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-QNACAHTHCGILYKDEGRLV 133 (921)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 133 (921)
...+...|..++|..+|+.+.. .+...+..+-.++...|++++|...|+++.+... .+...+..+...|.+.|+++
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 3456778999999999987654 4577888888899999999999999999988754 36788999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 002443 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALG 212 (921)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 212 (921)
+|.+.|+++.+...... ...|..+...|.+.|++++|++.|.++.+..- -+...|..+...|.+.|++++|.+
T Consensus 490 ~A~~vf~eM~~~Gv~Pd------vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEAN------VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred HHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999987643211 12367778888999999999999999876532 247789999999999999999999
Q ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhhhhhhhhcCCHHHHHH
Q 002443 213 CYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (921)
Q Consensus 213 ~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~ 287 (921)
.++++... .|+ ...+..+...|.+.|++++|.+.|+++.+... .+... |..+...+.+.|++++|+.
T Consensus 564 lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t-------ynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 564 VLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV-------YTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH-------HHHHHHHHHhcCCHHHHHH
Confidence 99999763 344 67888999999999999999999999988753 23333 3444555666789999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 002443 288 YYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK- 364 (921)
Q Consensus 288 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 364 (921)
+|+++.+.. .-+...|..+...+.+.|++++|.++++++.+.. +.+...|..+...|.+.|++++|++.|++..+..
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999998763 2246788999999999999999999999999874 4468899999999999999999999999987642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 365 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
..+...|..+...|.+.|++++|++++++.... .|+ ...+..+...+.+.|++++|.+.++++++....
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 234678999999999999999999999998765 454 667888889999999999999999999886443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-17 Score=179.08 Aligned_cols=349 Identities=16% Similarity=0.100 Sum_probs=291.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCC-----CCHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDP-----QNACA 118 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 118 (921)
..+.|..++..+...|.-..|+.+.++.+... |.++..+...+ .|....+.+++++.+..+++...- -.+.+
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 56789999999999999999999999999888 77766555554 555678999999999999998431 23567
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 002443 119 HTHCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (921)
Q Consensus 119 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 186 (921)
+..+|.+|..+- ...++++.++++++.+|.++.+ .+.++.-|...++.+.|.++.+++++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 888887776432 3567899999999999999876 677788888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------
Q 002443 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP---------- 256 (921)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------- 256 (921)
..+++.+|..++.++...+++.+|+...+.+++..++|.........+-...++.++|+..+...+..-.
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 5567999999999999999999999999999999888766655555555566666666665544443211
Q ss_pred ----------------------------------------------------ChHHHHHHHHHHHHhhhhhhhhcCCHHH
Q 002443 257 ----------------------------------------------------NFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 257 ----------------------------------------------------~~~~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
.....+...-..+...+..+...+..++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 1111222223344455667777889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Q 002443 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS 362 (921)
Q Consensus 285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 362 (921)
|..++.++-.+.|..+..|+..|.++...|+..+|.+.|..++.++|++......+|.++.+.|+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888 9999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002443 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (921)
Q Consensus 363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 402 (921)
++|.+.++|+.+|.++.++|+.++|.++|+.++++.+.++
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999987664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=169.39 Aligned_cols=310 Identities=15% Similarity=0.109 Sum_probs=268.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHH
Q 002443 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (921)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~ 166 (921)
.++.++.....+..+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++..++|..... .-..|..
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~-------MD~Ya~L 275 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA-------MDLYAVL 275 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh-------HHHHHHH
Confidence 345555555555666666767777789999999999999999999999999999999999987665 4445666
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002443 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (921)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (921)
+...|+++.-...-...+........-|+--+...+..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 77889999988888888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH-HcCChHHHHHHHH
Q 002443 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG-VAYG-EMLKFDMAIVFYE 324 (921)
Q Consensus 247 ~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~ 324 (921)
.|+.+..+.|.....+..+. ..|...+++.+|....+.+++..|.++.++..+| .++. .-.--++|.++++
T Consensus 356 aFR~Aq~Lap~rL~~Y~GL~-------hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 356 AFRTAQMLAPYRLEIYRGLF-------HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHhcchhhHHHHHHHH-------HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 99999999998765555444 4455578999999999999999999999998886 4443 3344689999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002443 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (921)
Q Consensus 325 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 404 (921)
+++.+.|....+-..++.++...|.++.++..+++.+...|+ ...+..||.++...+.+.+|+++|..++.++|++..+
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 999999999999999999999999999999999999998886 4678999999999999999999999999999998777
Q ss_pred HHHHHHH
Q 002443 405 YNNLGVL 411 (921)
Q Consensus 405 ~~~la~~ 411 (921)
...+-.+
T Consensus 508 l~Gl~~l 514 (564)
T KOG1174|consen 508 LRGLRLL 514 (564)
T ss_pred HHHHHHH
Confidence 6555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=194.67 Aligned_cols=248 Identities=15% Similarity=0.030 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHH
Q 002443 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE---------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (921)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (921)
+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|++..+ +..+|.++.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a-------~~~lg~~~~ 349 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA-------LGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHH
Confidence 44555555555555555555555555544322 22455555555555555555443 334444444
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002443 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (921)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (921)
..|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555544444444455555555555555
Q ss_pred HHHHHhC-CChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002443 249 ERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (921)
Q Consensus 249 ~~al~~~-p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (921)
+++++.. |+++..+..++.++.. .|++++|...+++.....|....+...++..|...| ++|...+++.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~-------~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSL-------KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHh-------CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 5555443 4444444455554444 235555555555555555555555555555555555 24555555444
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002443 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (921)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (921)
+..............++.-.|+-+.+..+ +++.+
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 501 ESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 43222221222255555555555555555 44443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-16 Score=192.55 Aligned_cols=369 Identities=14% Similarity=0.031 Sum_probs=294.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHC 122 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 122 (921)
+...|......+...|++++|+.+|+.+....+ -+...+..+..++...++.+.|.+.+..+.+. .| +...+..+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHH
Confidence 444677778889999999999999999876543 36678888899999999999999999988875 34 57788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH----------------------------HHHHHHHHcCChH
Q 002443 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT----------------------------DLGTSLKLAGNTQ 174 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----------------------------~lg~~~~~~g~~~ 174 (921)
...|.+.|++++|.+.|++..+ |+ ...+..+...+. .+...+...|...
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE--RN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999998754 22 222222222222 2223445567777
Q ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 002443 175 DGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (921)
Q Consensus 175 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (921)
.+.+.+..+++.. ..+..++..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|+.++|++.|++..+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7877777776653 2356778889999999999999999998763 45678999999999999999999999999876
Q ss_pred h--CCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002443 254 V--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (921)
Q Consensus 254 ~--~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 330 (921)
. .|+. . .+..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 319 ~g~~pd~-~-------t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 319 SGVSIDQ-F-------TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred cCCCCCH-H-------HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 4 3442 2 34444455566789999999999999876 55677899999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Q 002443 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAEAYNN 407 (921)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~ 407 (921)
.+...|+.+...|.+.|+.++|++.|++..+.. .-+..++..+..++.+.|+.++|.++|+...+..+ -+...|..
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 356789999999999999999999999988753 22466788888999999999999999999987532 23567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 408 LGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+..+|.+.|++++|.+.+++. ...|+
T Consensus 468 li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 999999999999999999875 23443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=194.15 Aligned_cols=261 Identities=20% Similarity=0.180 Sum_probs=75.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002443 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 51 ~l~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (921)
.+..|..++..|++++|++++++.+.. .|++...|..+|......+++++|+..|++++..++.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 345566777777777777777554433 356666666667666677777777777777776666666666666665 56
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCC
Q 002443 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 206 (921)
.+++++|+..++++.+..++ +.. +.....++...++++++...++++.... +.++..+..+|.++.+.|+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~-~~~-------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGD-PRY-------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred cccccccccccccccccccc-cch-------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 66666676666666554432 111 2333344555566666666666655433 4455566666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHH
Q 002443 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
.++|+..|+++++.+|++..+...++.++...|+.+++.+.++...+..|+
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~----------------------------- 212 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD----------------------------- 212 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-----------------------------
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-----------------------------
Confidence 666666666666666666666666666666666666655555555444433
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002443 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (921)
++..+..+|.++..+|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..++++++
T Consensus 213 ------------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 213 ------------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ------------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred ------------HHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 334444455555555555555555555555555555555555555555555555555555544
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-16 Score=195.51 Aligned_cols=389 Identities=15% Similarity=0.068 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHHHH
Q 002443 49 KDALSYANILRSRNKFVDALALYEIVLEK--DSG----------------------------------NVEAHIGKGICL 92 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~la~~~ 92 (921)
..|-.+...|.+.|++++|+.+|+++.+. .|+ +...+..+...|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 34555566666677777777777666553 222 222333334444
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHhHHHHHHHHHHHHHHHHHc
Q 002443 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLA 170 (921)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~lg~~~~~~ 170 (921)
.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|+++.+.. |+... +..+-..+...
T Consensus 334 ~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~ll~a~~~~ 402 (857)
T PLN03077 334 LSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IASVLSACACL 402 (857)
T ss_pred HhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHHHHHHHhcc
Confidence 44444444444444432 1233344444455555555555555555443322 22211 22222233444
Q ss_pred CChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002443 171 GNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (921)
Q Consensus 171 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (921)
|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|+..|+
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555555554422 2345667777888888888888888887643 345678888888888999999999998
Q ss_pred HHHHhCCChHHHHHHHHHHHH----------------------------hhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 002443 250 RCLAVSPNFEIAKNNMAIALT----------------------------DLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301 (921)
Q Consensus 250 ~al~~~p~~~~~~~~la~~~~----------------------------~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 301 (921)
+++...+.+...+..+..++. .+-..|.+.|++++|...|++. +.+..
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~ 555 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVV 555 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChh
Confidence 887543333333332222222 2335677788999999888875 55678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Q 002443 302 AMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVV 377 (921)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~ 377 (921)
.|..+...|...|+.++|++.|++..+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+ -+...|..+..+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 8999999999999999999999988875 344 45566677788889999999999998874432 235788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHH
Q 002443 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (921)
Q Consensus 378 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~ 457 (921)
+.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+.. ++-.|...|..++.
T Consensus 635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l--l~n~ya~~g~~~~a 710 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL--LCNLYADAGKWDEV 710 (857)
T ss_pred HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH--HHHHHHHCCChHHH
Confidence 99999999999998875 35555 6677777778888899999999999999999987765443 34455566665554
Q ss_pred HHH
Q 002443 458 FEA 460 (921)
Q Consensus 458 ~~~ 460 (921)
.+.
T Consensus 711 ~~v 713 (857)
T PLN03077 711 ARV 713 (857)
T ss_pred HHH
Confidence 433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=194.84 Aligned_cols=250 Identities=12% Similarity=0.004 Sum_probs=158.2
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 002443 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (921)
+.+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456788888888888888887777777776533 2367777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002443 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (921)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 321 (921)
++|+..|+++++++|++..++..++.++. ..|++++|+..++++++++|.++..+..++.++...|++++|+.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-------~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLF-------MAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 77777777777777776655444433333 34566666666666666666666555555555555666666666
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002443 322 FYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 322 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
.+++++... |+++..+..+|.++...|++++|+..+++.....|....+...++..|...|+ +|...+++.++..-.
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 666666553 55566666666666666666666666666666666666666666666666553 555555554443222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
...-......+|.-.|+.+.+... +++.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 222222355556666666655555 44443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=186.07 Aligned_cols=240 Identities=20% Similarity=0.255 Sum_probs=186.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 002443 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (921)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (921)
+..|..+++.|+..+|.-.|+.+++.+|.++++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHH
Q 002443 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 318 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~ 318 (921)
-.+|+.++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999888764311000000000000000111223445556666666666 577778888888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002443 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (921)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 398 (921)
|+.+|+.++...|++...|+.||-.+....+.++|+..|++|+++.|.+..++++||..+..+|.|++|.++|-.+|.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888877788888888888888888888888888888888888888888888777765
Q ss_pred CC
Q 002443 399 PT 400 (921)
Q Consensus 399 p~ 400 (921)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 43
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=186.94 Aligned_cols=267 Identities=21% Similarity=0.263 Sum_probs=218.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (921)
+...-+..|..++++|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++..++..||..|
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSEL 204 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~ 204 (921)
...|.-.+|..++.+.+...|........--...............+..-.+.|..+....| .+++++..||.+|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999999999988764221000000000000000111223445566777777777 6899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHH
Q 002443 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
|+|++|+++|+.|+...|++...|..||-.+....+.++|+..|++|+++.|.+..++++++..+.++| .|++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG-------~ykE 516 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG-------AYKE 516 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh-------hHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888875 9999
Q ss_pred HHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHH
Q 002443 285 GVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDMAI 320 (921)
Q Consensus 285 A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A~ 320 (921)
|.++|-.++.+.+.. ..+|..|-.++..+++.|-+.
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999876541 235555555555555555433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=171.48 Aligned_cols=245 Identities=19% Similarity=0.255 Sum_probs=225.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002443 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
...+|.||...|.+.+|.+.++..++..| .++.+..|+.+|....+...|+..+.+.++..|.+...+...+.++..++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 35689999999999999999999998776 47889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002443 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (921)
++++|.++|+.+++.+|.+.++.. .++..|+..++.+-|+.+|++.+++.-.+++.+.++|.+++..+++|-+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiA-------cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIA-------CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeee-------eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 999999999999999999876543 3445556678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002443 320 IVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (921)
Q Consensus 320 ~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 396 (921)
+..|++++.... ..+++|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999998743 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHH
Q 002443 397 ANPTYAEAYNNLGVLY 412 (921)
Q Consensus 397 ~~p~~~~~~~~la~~~ 412 (921)
..|.-.+..++++.+-
T Consensus 458 ~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 458 VMPDMAEVTTNLQFMS 473 (478)
T ss_pred hCccccccccceeEEe
Confidence 9999888888776543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-18 Score=173.02 Aligned_cols=299 Identities=16% Similarity=0.135 Sum_probs=247.6
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002443 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (921)
Q Consensus 42 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (921)
......++.....+..+++..+|.+|+..|..+++..|+++..|...+.+++..+++++|.-..++.++++|.....+..
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 33445778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCHHHHHHHH
Q 002443 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHYAPAYYNLG 198 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la 198 (921)
.+.++...++..+|.+.++ +..+ + ....|+..+++.+..+ |....+....+
T Consensus 123 ~~~c~~a~~~~i~A~~~~~--------~~~~-------~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka 176 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLK--------SKQA-------Y-----------KAANALPTLEKLAPSHSREPACFKAKLLKA 176 (486)
T ss_pred hhhhhhhhHHHHHHHHHhh--------hhhh-------h-----------HHhhhhhhhhcccccccCCchhhHHHHhhh
Confidence 9999999999999988887 1111 0 1223344444443332 44456667788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHH-----HHHHHHhhh
Q 002443 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-----MAIALTDLG 273 (921)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----la~~~~~lg 273 (921)
.|+...|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+....... .......-|
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999987644221 122334456
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 274 TKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (921)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 349 (921)
+-..+.|++.+|.+.|..++.++|++ +..|.+++.+...+|+..+|+...+.++++++....++...|.++...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888998888888875 45688888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhCCC
Q 002443 350 LDKAVECYQMALSIKPN 366 (921)
Q Consensus 350 ~~~A~~~~~~al~~~p~ 366 (921)
|++|++.|+++++...+
T Consensus 337 ~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 88888888888887655
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-16 Score=175.64 Aligned_cols=297 Identities=10% Similarity=-0.026 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDPQNACAH-THCGIL 125 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~ 125 (921)
+...+..|...+..|+|++|.+...+.-+..+ ++..++.+ +......|+++.|..+|+++.+.+|++..+. ...+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 34445555555666666666655555433222 23333333 3444566666666666666666655553222 233556
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH--------HH
Q 002443 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--------NL 197 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~l 197 (921)
+...|++++|...++++.+..|+++.+ +..++.+|...|++++|++.+.+..+....++.... .+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 666666666666666666666665554 333444445556666666666555555443322111 11
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh
Q 002443 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
........+-+...+.++..-+..|+++.+...++..+...|+.++|.+.++++++..++
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-------------------- 295 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-------------------- 295 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------------------
Confidence 111111122222333333332333445555555555566666666665555555553332
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002443 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 357 (921)
.......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|
T Consensus 296 ----------------------~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 296 ----------------------ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred ----------------------HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2222222221 2245555555555555555555555555555555555555555555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002443 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
+++++..|++. .+..++.++.++|+.++|.++|++++.+
T Consensus 352 e~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 352 RAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555532 2334555555555555555555555543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=157.62 Aligned_cols=215 Identities=25% Similarity=0.248 Sum_probs=198.7
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002443 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (921)
Q Consensus 42 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (921)
.....-.+..+.+|..|++.|++..|...++++++.+|++..++..++..|...|+.+.|.+.|+++++++|++.+++.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 44445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002443 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (921)
.|..++.+|++++|...|++++. +|..... +..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..+
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALA-DPAYGEP----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHh-CCCCCCc----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 99999999999999999999996 4554432 556899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHH
Q 002443 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (921)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (921)
++.|+|..|..++++.....+-..+.+.....+-...|+-+.+.++=.+.-...|...+.
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999999998888888999889999999999999999888888888986643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-15 Score=152.77 Aligned_cols=321 Identities=20% Similarity=0.213 Sum_probs=255.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 002443 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKN 237 (921)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~ 237 (921)
.|..+....+.++|++.|.++++.+|...++...||.+|...|+.+.|+.+-+..++. |+. ..+...+|.-|+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 4556666789999999999999999999999999999999999999999998877654 432 4578899999999
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 002443 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGE 312 (921)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~ 312 (921)
.|-++.|...|....+...--. .++..+-.+|....++++|++..++..+..++. +..|..++..+..
T Consensus 120 aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 9999999999998876433222 245556667777899999999999999988765 4578889999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 002443 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMI 391 (921)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l 391 (921)
..+.+.|...++++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +++...|..+|.++|+.++.+..+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 678899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHH-HHHHHh
Q 002443 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW-GKRFMR 470 (921)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~~~-~~~~~~ 470 (921)
.++.+..++ ..+...++.+-....-.+.|..++.+-+...|+-...+.-.-+.+.-..+|...+.+...+.. ++++.+
T Consensus 273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 999999887 556677777777788889999999999999998543332111122222233333333333322 222211
Q ss_pred hccCCCCCCCCCCCCCCceeeccCCCcccchhh
Q 002443 471 LYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVS 503 (921)
Q Consensus 471 ~~~~~~~~~~~~~~~~~lriGyvS~df~~H~v~ 503 (921)
.+ .=|.-++||-+.-|.+|.-+
T Consensus 352 -~~----------~YRC~~CGF~a~~l~W~CPs 373 (389)
T COG2956 352 -KP----------RYRCQNCGFTAHTLYWHCPS 373 (389)
T ss_pred -cC----------CceecccCCcceeeeeeCCC
Confidence 11 12566788888888887643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=170.39 Aligned_cols=233 Identities=18% Similarity=0.117 Sum_probs=161.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002443 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (921)
..+..+.++..+.+++...+-+++. .+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~---~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEE---RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHh---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence 3456788888888888765543332 3556888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHH
Q 002443 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (921)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~ 287 (921)
++|+..|+++++++|++..++.++|.++...|++++|++.|+++++.+|+++... .+.. .....+++++|+.
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-----~~~~---l~~~~~~~~~A~~ 186 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-----LWLY---LAESKLDPKQAKE 186 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----HHHH---HHHccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876211 1111 1223567888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (921)
Q Consensus 288 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (921)
.+++.....+.. .+. .+.++...|+..++ ..++.+. ++.|...++|+++|.++...|++++|+.+|+++
T Consensus 187 ~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 187 NLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 886665443221 111 24444455554333 1222222 333444555666666666666666666666666
Q ss_pred HhhCC-CCHHHHHHHH
Q 002443 361 LSIKP-NFSQSLNNLG 375 (921)
Q Consensus 361 l~~~p-~~~~~~~~la 375 (921)
++.+| ++.+..+.+.
T Consensus 263 l~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 263 LANNVYNFVEHRYALL 278 (296)
T ss_pred HHhCCchHHHHHHHHH
Confidence 65554 3344333333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=179.04 Aligned_cols=389 Identities=16% Similarity=0.164 Sum_probs=288.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHHHH-----HHhCCHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV--------------------EAHIGKGICL-----QMQNMGRLA 101 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--------------------~~~~~la~~~-----~~~g~~~~A 101 (921)
+......++.+....+.|.+|...+.......-++. ...+..+..+ ....+...|
T Consensus 398 D~sn~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~a 477 (1238)
T KOG1127|consen 398 DASNQRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALA 477 (1238)
T ss_pred ChhhhhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 333355566666677777777777776655542111 1111111111 234457889
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 002443 102 FDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (921)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~ 181 (921)
+..|-+++++++..+.++..+|.+|...-+...|..+|+++.++++.+..+ ....+..|....+++.|.....
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998766 4455666777899999999976
Q ss_pred HHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH
Q 002443 182 EALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (921)
Q Consensus 182 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (921)
.+-+..|.. ...|..+|..|.+.++...|+..|+.++..+|++...|..+|.+|...|++..|++.|.++..+.|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 666665543 345677999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---
Q 002443 260 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHF--- 329 (921)
Q Consensus 260 ~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 329 (921)
...+..+..... .|++.+|+..+...+..... ..+.+...+..+...|-..+|..+++++++.
T Consensus 631 y~~fk~A~~ecd-------~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 631 YGRFKEAVMECD-------NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred HHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 776666655555 46999999999888866443 3455666666666666667777777776654
Q ss_pred ----C-CCCHHHHHHHHHHHH-------------------H----cCCH------HHHHHHHHHHHhhCCCCHHHHHHHH
Q 002443 330 ----N-PHCAEACNNLGVIYK-------------------D----RDNL------DKAVECYQMALSIKPNFSQSLNNLG 375 (921)
Q Consensus 330 ----~-p~~~~~~~~la~~~~-------------------~----~g~~------~~A~~~~~~al~~~p~~~~~~~~la 375 (921)
. .++...|..++..+. . .+.. --|.+++-..+++... +..|+++|
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLG 782 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLG 782 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHh
Confidence 1 222223322222211 1 1111 1244444444444322 66889999
Q ss_pred HHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhh
Q 002443 376 VVYTV--------QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (921)
Q Consensus 376 ~~~~~--------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~ 447 (921)
.-|+. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+...|.....+.|+ ++.
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl--gvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL--GVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc--cee
Confidence 88776 3345689999999999999999999999998 666999999999999999999999998884 455
Q ss_pred hccCCC
Q 002443 448 YINEGH 453 (921)
Q Consensus 448 ~~~~~~ 453 (921)
++...+
T Consensus 860 ~l~n~d 865 (1238)
T KOG1127|consen 860 VLENQD 865 (1238)
T ss_pred EEeccc
Confidence 554444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-15 Score=188.63 Aligned_cols=358 Identities=10% Similarity=0.022 Sum_probs=281.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCGI 124 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 124 (921)
+...+..+...|.+.|++++|.++|+++.+ .+...|..+...|.+.|++++|++.|++..+. .|+. ..+..+-.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHH
Confidence 556677788899999999999999998643 45678999999999999999999999988765 3544 34555556
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (921)
.+...|++++|.+.++.+.+...... ..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISY------VVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcc------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHC
Confidence 77888999999999988887654322 12466677788888999999988887643 3456788888888888
Q ss_pred CCHHHHHHHHHHHHHh-CCCCH----------------------------------HHHHHHHHHHHHCCCHHHHHHHHH
Q 002443 205 MQYDTALGCYEKAALE-RPMYA----------------------------------EAYCNMGVIYKNRGDLESAIACYE 249 (921)
Q Consensus 205 g~~~~A~~~~~~al~~-~p~~~----------------------------------~~~~~la~~~~~~g~~~~A~~~~~ 249 (921)
|+.++|+..|+++... .|+.. ..+..+...|.+.|+.++|...|+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888888653 23221 112234467888888888888887
Q ss_pred HHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002443 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-YADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (921)
Q Consensus 250 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 328 (921)
.. +.+...+. .+...+...|+.++|+++|++..+.... +...+..+-..+...|+.++|..+|+.+.+
T Consensus 549 ~~----~~d~~s~n-------~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 549 SH----EKDVVSWN-------ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred hc----CCChhhHH-------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 75 33333444 4444555678999999999998875322 445667777789999999999999999985
Q ss_pred hC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002443 329 FN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (921)
Q Consensus 329 ~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 406 (921)
.. .-+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++.|++...+.
T Consensus 618 ~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 42 224688999999999999999999999985 35554 677888888889999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 407 NLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
.++.+|...|++++|.+..+...+
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999999999887754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-15 Score=163.97 Aligned_cols=348 Identities=14% Similarity=0.107 Sum_probs=266.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 002443 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (921)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (921)
...++..+.-.+..++|.+.++..+.+++..|++.+.+...|..+...|+-++|....+.++..++.+.-. |.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-------wH 79 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-------WH 79 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-------HH
Confidence 34667777778899999999999999999999999999999999999999999999999999988887554 77
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 002443 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (921)
.+|.++....+|++|+++|+.|+.+.|++..++..++.+..++++++-....-.+.++..|..-..|...+..+...|++
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC---CChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 002443 242 ESAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318 (921)
Q Consensus 242 ~~A~~~~~~al~~~---p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 318 (921)
..|....+...+.. |+.... ....+......+....|.+++|++.+.+--...-+........+.++..++++++
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~--e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDY--EHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 99999988877665 332222 2233344445566677888888887776544444445566778999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHH-------------HHHHHHHHH---HHc
Q 002443 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALSIKPNFSQ-------------SLNNLGVVY---TVQ 381 (921)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~-------------~~~~la~~~---~~~ 381 (921)
|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|.... ....+..++ .+.
T Consensus 238 A~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 238 AVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 999999999999999998888888876333334444 455544443322100 000000000 011
Q ss_pred -------------CCHHHHHHHHHHHHHh-----C--------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 382 -------------GKMDAAAEMIEKAIAA-----N--------------PTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 382 -------------g~~~~A~~~l~~al~~-----~--------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
.+..+. ..+++.+.. . |-. ...++.++.-+...|+++.|..+...
T Consensus 318 g~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred CCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111111 133333221 1 111 34677899999999999999999999
Q ss_pred HhhcCCCChhhH
Q 002443 428 CLKIDPDSRNAG 439 (921)
Q Consensus 428 al~l~P~~~~a~ 439 (921)
|+..-|.-.+.+
T Consensus 397 AIdHTPTliEly 408 (700)
T KOG1156|consen 397 AIDHTPTLIELY 408 (700)
T ss_pred HhccCchHHHHH
Confidence 999999877655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-16 Score=162.28 Aligned_cols=207 Identities=20% Similarity=0.167 Sum_probs=189.6
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (921)
.......++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
.++...|++++|+..+++++...+... ....+..+|.++...|++++|...+.++++.+|++..++..+|.++..
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 999999999999999999998543211 123467789999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 002443 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (921)
.|++++|+..++++++..|.+...+..++.++...|+.++|..+.+.+....
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 9999999999999999988889999999999999999999999888776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=168.78 Aligned_cols=278 Identities=19% Similarity=0.200 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (921)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (921)
.+.-....|..++...+|.+|+..|..+++..|+++..|.+.+.+++..++|++|....++.++++|.....+...+.++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 34446667788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHH------------HhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002443 236 KNRGDLESAIACYERCL------------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (921)
Q Consensus 236 ~~~g~~~~A~~~~~~al------------~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 303 (921)
..+++..+|.+.++..- .+.|.+... -.....-..-+.++...+++++|...--..+++++.+.+++
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~-pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE-PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC-chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 99998888887766221 001110000 00011111223444556799999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----
Q 002443 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---- 367 (921)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 367 (921)
+..|.++....+.+.|+..|++++.++|+.. +.+..-|.-.++.|++.+|.++|..++.++|++
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 9999999999999999999999999998763 455667888899999999999999999999986
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+..|.+++.+...+|+..+|+...+.++++++....++...|.++..++++++|++.|+++++...+
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4578999999999999999999999999999999999999999999999999999999999998776
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-14 Score=154.54 Aligned_cols=391 Identities=14% Similarity=0.047 Sum_probs=272.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (921)
....++.--..+...++|++|.+...+++...|++..++...-.++.+.++|++|+...++-....-.+ ...+..+.|.
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~ 89 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCE 89 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHH
Confidence 457888889999999999999999999999999999999999999999999999995544432222122 2237899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------------------
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------------------- 187 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------- 187 (921)
++++..++|+..++ ..++.+... +...+.+++++++|++|++.|+..++.+
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 99999999999998 233433333 4455666677799999999998875442
Q ss_pred -----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHCCC
Q 002443 188 -----------PH-YAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGD 240 (921)
Q Consensus 188 -----------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~ 240 (921)
|. ..+.+++.+.++...|+|.+|++.+++++.+. .+ -..+...++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 35678999999999999999999999995431 11 12366788999999999
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH------------------------------------------Hhhhhhhhh
Q 002443 241 LESAIACYERCLAVSPNFEIAKNNMAIAL------------------------------------------TDLGTKVKL 278 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~------------------------------------------~~lg~~~~~ 278 (921)
.++|...|...++.++.+.........-+ .+.+.+...
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776542211111000 000011111
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 002443 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECY 357 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~ 357 (921)
.+..+.+.+.....-...|...--.............+.+|+.++....+.+|.+ ..+...++.+.+.+|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111111111111111112211111222223333336888888998888888887 778888999999999999999999
Q ss_pred HHHH--------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 358 QMAL--------SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAI 422 (921)
Q Consensus 358 ~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~ 422 (921)
...+ +.. ..+.+-..+-..++..++-+.|...+.+++.- .+.....+..++..-.+.|+.++|.
T Consensus 400 ~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 400 SLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 9433 221 22444455556677777766677777776654 2222345566777778889999999
Q ss_pred HHHHHHhhcCCCChhhHhhHHHHhhhc
Q 002443 423 DAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (921)
Q Consensus 423 ~~~~~al~l~P~~~~a~~~~l~a~~~~ 449 (921)
..+++.++.+|++.++...++.+..++
T Consensus 479 s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 479 SLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 999999999999999998888777665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-16 Score=166.01 Aligned_cols=240 Identities=18% Similarity=0.166 Sum_probs=152.8
Q ss_pred CCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 61 RNKFVDALALYEIVLEKDS----GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (921)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (921)
.+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566778888888886433 235678888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (921)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (921)
..|+++++++|++..+ +..+|.++...|++++|++.++++++.+|+++.... ...+....+++++|+..+++
T Consensus 119 ~~~~~Al~l~P~~~~a-------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 119 EAFDSVLELDPTYNYA-------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHH
Confidence 8888888888877554 566677777777888888888888877777763211 11233455677777777766
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC
Q 002443 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296 (921)
Q Consensus 217 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 296 (921)
+....+.. .+. .+.++...|+..++ +.++.+.+.... ..+..
T Consensus 191 ~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~----------------------------------~~~l~ 232 (296)
T PRK11189 191 RYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATD----------------------------------NTELA 232 (296)
T ss_pred HHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCC----------------------------------cHHHH
Confidence 55443221 111 34444555555443 233333322222 22223
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Q 002443 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKD 346 (921)
Q Consensus 297 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 346 (921)
|...++|+.+|.++...|++++|+.+|+++++.+| +..+..+.+..+...
T Consensus 233 ~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 233 ERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666664 444444444444333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-16 Score=172.32 Aligned_cols=244 Identities=23% Similarity=0.319 Sum_probs=206.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Q 002443 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 257 (921)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 257 (921)
.|....+...++..|..+|+|++|+..++.++++ .|.-......+|.+|..++++.+|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666777788999999999999999999999987 5555566667999999999999999999999987431
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002443 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (921)
Q Consensus 258 ~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (921)
....+...+.++.+|+..|...|++++|..++++++++.. .-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1122335677888889999999999999999999987632 23456888999999999999999999999987
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 330 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (921)
Q Consensus 330 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 393 (921)
++.-+..+.++|.+|..+|++++|.++|++|+++. +.....+..+|..|.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 22347789999999999999999999999999874 22355889999999999999999999999
Q ss_pred HHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 394 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 394 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
++.+ .|+....+.+|+.+|..+|++++|+++.++++.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8876 455567899999999999999999999999875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-15 Score=168.71 Aligned_cols=241 Identities=25% Similarity=0.344 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 002443 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------- 220 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 220 (921)
..+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666999999999999999999999998 5555666667999999999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC---
Q 002443 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--- 296 (921)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 296 (921)
+|....++.+||.+|...|++++|..++++++++.... ......++..+..++.++..++++++|+.++++++++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 34456789999999999999999999999999875431 12233456677788888889999999999999998763
Q ss_pred -----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002443 297 -----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (921)
Q Consensus 297 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (921)
+..+..+.++|.+|..+|++++|.++|++++++. +.....+..+|..|.+.+++.+|.+.|.++..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2345689999999999999999999999999873 233668889999999999999999999999876
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002443 364 -------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 364 -------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999854
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-15 Score=146.60 Aligned_cols=304 Identities=19% Similarity=0.210 Sum_probs=216.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 002443 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (921)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 164 (921)
-+..|.-+...++.++|++.|..+++.+|...++...+|.++.+.|..+.|+..-+..++ .|+..... ...++..+|
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~q--r~lAl~qL~ 114 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQ--RLLALQQLG 114 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHH--HHHHHHHHH
Confidence 355677777788888899999888888888888888899998888988888887766554 45543322 222345555
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 002443 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (921)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (921)
.-|+..|-++.|.+.|....+. ..--..++..+..+|....++++|
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de----------------------------------~efa~~AlqqLl~IYQ~treW~KA 160 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDE----------------------------------GEFAEGALQQLLNIYQATREWEKA 160 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcc----------------------------------hhhhHHHHHHHHHHHHHhhHHHHH
Confidence 5555555555555555544443 333334445555555555555555
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002443 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (921)
Q Consensus 245 ~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 324 (921)
++.-++..++.++. ....++..|..++..+....+.+.|...++++++.+|+...+-..+|.++...|+|+.|++.++
T Consensus 161 Id~A~~L~k~~~q~--~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 161 IDVAERLVKLGGQT--YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred HHHHHHHHHcCCcc--chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 55555555555443 2334566677777777777888889999999999999999999999999999999999999999
Q ss_pred HHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002443 325 LAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (921)
Q Consensus 325 ~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 403 (921)
.+++.+|+. +++...|..+|...|+.++.+..+.++.+..+. ..+...++..-....-.+.|..++.+-+...|+--.
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 999999987 778889999999999999999999999988776 455566777777777788999999999999998443
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHH
Q 002443 404 AYNNLGVLYR--DAGSISLAIDAYEQC 428 (921)
Q Consensus 404 ~~~~la~~~~--~~g~~~~A~~~~~~a 428 (921)
.+..+..-.. ..|...+.+..++..
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHH
Confidence 3333322222 123345555555444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-16 Score=147.81 Aligned_cols=205 Identities=21% Similarity=0.190 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 002443 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 271 (921)
.+...||.-|++.|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----------------- 98 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----------------- 98 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----------------
Confidence 344555555555555555555555555555555555555555555555555555555555544
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Q 002443 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDN 349 (921)
Q Consensus 272 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~ 349 (921)
+|++.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|+
T Consensus 99 ------------------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 99 ------------------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred ------------------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 4455555666666666666666666666666654 34446667777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002443 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (921)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (921)
++.|..+|+++++++|+++.....++..+++.|++-.|..++++....-+-.++.+.....+-...|+-+.|-++=.+..
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777776666666777777777777777777777777777
Q ss_pred hcCCCChh
Q 002443 430 KIDPDSRN 437 (921)
Q Consensus 430 ~l~P~~~~ 437 (921)
...|...+
T Consensus 235 r~fP~s~e 242 (250)
T COG3063 235 RLFPYSEE 242 (250)
T ss_pred HhCCCcHH
Confidence 77776544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=158.53 Aligned_cols=202 Identities=26% Similarity=0.291 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 002443 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 270 (921)
+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----------- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------
Confidence 566677777777777777777777777777777777777777777777777777777766666655543
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 002443 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRD 348 (921)
Q Consensus 271 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 348 (921)
..+..+|.++...|++++|+..+++++... +.....+..+|.++...|
T Consensus 100 ------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 100 ------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred ------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 344445555555555666666666555532 334556666777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
++++|...++++++.+|++...+..+|.++...|++++|..+++++++..|.+...+..++.++...|+.++|..+.+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777776766777777777777777777777776666
Q ss_pred hhcCC
Q 002443 429 LKIDP 433 (921)
Q Consensus 429 l~l~P 433 (921)
....|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 55443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-13 Score=138.74 Aligned_cols=376 Identities=14% Similarity=0.076 Sum_probs=269.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (921)
+...|+..|+--..++++..|..+|++++..+..+...|+..+.+-++......|...+++++.+-|.-...|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45678888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
..+|+..-|.+.|++.++..|+.. + +......-...++.+.|...|++-+-.+|+ ...|...+..-.+.|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eq-a-------W~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQ-A-------WLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN 222 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHH-H-------HHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc
Confidence 999999999999999999999843 2 333334445557788888888888877765 6677778888888888
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH--HHHHHHHHHHH-----------
Q 002443 207 YDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE--IAKNNMAIALT----------- 270 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~----------- 270 (921)
...|...|++|++.-.++ .......|..-..+..++.|...|+-+++.-|.+. ..+..+...--
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 888888888887765443 22344455555666777777777777777766652 11111111000
Q ss_pred ------------------------hhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHH-HHHHcCCh
Q 002443 271 ------------------------DLGTKVKLEGDINQGVAYYKKALYYNWHYAD---------AMYNLGV-AYGEMLKF 316 (921)
Q Consensus 271 ------------------------~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~-~~~~~g~~ 316 (921)
..-.+....|+.+.-.+.|++++..-|...+ .|.+.+. .-....+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1111122345666666666666655543221 1222211 11234566
Q ss_pred HHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 317 DMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (921)
Q Consensus 317 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 392 (921)
+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+...|.+ ........+-.++++++...++|+
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66666777777666643 5566666777777777777777777777776663 334444555667778888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002443 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
+.++..|++..+|...|.+-..+|+.+.|...|+-|++..
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888887653
|
|
| >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-15 Score=168.23 Aligned_cols=269 Identities=17% Similarity=0.097 Sum_probs=168.6
Q ss_pred HHHHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEE--eec-cCCCCCCCCCc----------c--EEEecCCCCC
Q 002443 555 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV--TWI-GYPNTTGLPTI----------D--YRITDSLADP 619 (921)
Q Consensus 555 ~~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~ApvQ~--~~~-G~p~ttG~~~~----------D--y~i~d~~~~p 619 (921)
-..++..|++.++||+-=-.. ..+..+.++.+.|.+-+ +.. |++...+-..+ | +..+| ++.-
T Consensus 269 ~~~l~~~ir~~rpDIVHt~~~--~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~ 345 (578)
T PRK15490 269 IKHLVPHLCERKLDYLSVWQD--GACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSN 345 (578)
T ss_pred HHHHHHHHHHcCCCEEEEcCc--ccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hhhc
Confidence 367999999999999942211 12345566666655544 332 23322221100 1 12222 2211
Q ss_pred C-Cccc-------CcccceEEcCCCccc--cCCCCCCC-CCCC--CCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHh
Q 002443 620 P-ETKQ-------KHVEELIRLPECFLC--YTPSPEAG-PVCP--TPALTNGFITFGSFNN--LAKITPKVLQVWARILC 684 (921)
Q Consensus 620 ~-~~~~-------~~~e~~~~lp~~~~~--~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~--~~K~~~~~~~~~~~il~ 684 (921)
. .... .-.+++..+|+..-. |.|....+ ..+. ...++++.+++|++.+ ..|.....++++.++++
T Consensus 346 s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk 425 (578)
T PRK15490 346 NHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQ 425 (578)
T ss_pred cHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHh
Confidence 1 1111 124677788864311 22221111 0000 1223445567787775 48999999999999999
Q ss_pred HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCC
Q 002443 685 AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGV 763 (921)
Q Consensus 685 ~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~Gv 763 (921)
..|+.+|+++|.+ +.++.+++.++++|+. ++|.|+|... +....|..+||++-|+-+ +.|.+.+|||++|+
T Consensus 426 ~~pdirLvIVGdG----~~~eeLk~la~elgL~-d~V~FlG~~~---Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl 497 (578)
T PRK15490 426 HHPATRFVLVGDG----DLRAEAQKRAEQLGIL-ERILFVGASR---DVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV 497 (578)
T ss_pred HCCCeEEEEEeCc----hhHHHHHHHHHHcCCC-CcEEECCChh---hHHHHHHhCCEEEEcccccCccHHHHHHHHhCC
Confidence 9999999999876 5677888899999997 8999999853 455567779999998877 56999999999999
Q ss_pred cEEecCCCcccccchhH-HHhhcCCcccccC--CHHH---HHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 002443 764 PCVTMAGSVHAHNVGVS-LLTKVGLKHLIAK--NEDE---YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 837 (921)
Q Consensus 764 Pvvt~~g~~~~~r~~~~-~l~~~gl~~~i~~--~~~~---y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 837 (921)
|||+ +++|+. =+-.-|...+++. |.++ -+..+.++..+...+..+.++.|+.+. ..|+.+.++..
T Consensus 498 PVVA-------TdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~--e~FS~e~Mv~~ 568 (578)
T PRK15490 498 PVIS-------TPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQ--ERFTVEHMVGT 568 (578)
T ss_pred CEEE-------eCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCCHHHHHHH
Confidence 9997 666511 0111244444433 2223 333445556555555567777777764 45999999999
Q ss_pred HHHHHH
Q 002443 838 LESTYR 843 (921)
Q Consensus 838 ~e~~~~ 843 (921)
++++|-
T Consensus 569 y~ki~~ 574 (578)
T PRK15490 569 FVKTIA 574 (578)
T ss_pred HHHHHH
Confidence 999885
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=161.16 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=163.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcC
Q 002443 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (921)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~ 280 (921)
...+++++|+..+.++++++|++..+|...+.++..+| ++++++..++++++.+|++..++...+.++..++. .
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~-----~ 122 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP-----D 122 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----h
Confidence 34556677777777777777777777777777777777 56777777777777777777777766666655541 1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HHH
Q 002443 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DKA 353 (921)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A 353 (921)
..++++.+++++++.+|++..+|...+.++...|++++|+++++++++.+|.+..+|+..+.++... |.+ +++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 2356788888888888888888888888888888888888888888888888888888888887765 222 578
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 354 VECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
+++..+++.++|++..+|..++.++.. +++..+|++.+.+++...|++..++..|+.+|...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 888889999999999999999888887 45567788888888888888888999999988763
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=155.58 Aligned_cols=211 Identities=11% Similarity=0.018 Sum_probs=144.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002443 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (921)
.++.++|+..+.++++++|++..++. ..+.++...+ ++++++..++++++.+|++..+|+..+.++...|+.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~-------~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWH-------FRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHH-------HHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 45556666666666666666655433 3333333334 456677777777777777777777777777666653
Q ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHH
Q 002443 208 --DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (921)
Q Consensus 208 --~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A 285 (921)
++++.+++++++.+|++..+|...+.++...|++++|++++.++++.+|.+..++...+.++..++.........+++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 567777777777777777777777777777777777777777777777777777777766665543211111234567
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 286 VAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (921)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (921)
+.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.+..++..|+.+|..
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 888888888888888888888888877 3455667777777777777777777777777765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-12 Score=135.77 Aligned_cols=386 Identities=15% Similarity=0.069 Sum_probs=286.0
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 45 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
..+...|+..|.+-++++....|..++++++..-|.--..|+.....-..+|+...|.+.|++.++..|+. .+|.....
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~ 182 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIK 182 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHH
Confidence 34667899999999999999999999999999999988999999999999999999999999999998853 45666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCC--------------------------------
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-------------------------------- 172 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~-------------------------------- 172 (921)
.-.+.++.+.|...|++.+-..|+-.. +...+..-.+.|+
T Consensus 183 fElRykeieraR~IYerfV~~HP~v~~--------wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fE 254 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVLVHPKVSN--------WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFE 254 (677)
T ss_pred HHHHhhHHHHHHHHHHHHheecccHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 666666667777777776666665221 3333333344444
Q ss_pred -----hHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC---HHHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002443 173 -----TQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQ---YDTAL-----GCYEKAALERPMYAEAYCNMGVIYKN 237 (921)
Q Consensus 173 -----~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~---~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~ 237 (921)
++.|...|+-++..-|.+ ...+..+-..--+-|+ .++++ -.|++.+..+|.+.++|+..-.+...
T Consensus 255 e~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 255 ERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 444444444444444443 1222222222222233 12222 13455566788888999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhh---hhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHH
Q 002443 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV---KLEGDINQGVAYYKKALYYNWH----YADAMYNLGVAY 310 (921)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~---~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~ 310 (921)
.|+.+.-.+.|++|+...|...+.....-.+|.-+..++ ....+.+.+.+.|+.++++-|. .+.+|...|...
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 999999999999999988764433222222222222211 2357889999999999999886 367899999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (921)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 390 (921)
.++.+...|.+.+-.++-..|.+ ........+-.+.++++...++|++-++..|.+..+|...|.+-..+|+.+.|...
T Consensus 415 IRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999974 44555666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhh
Q 002443 391 IEKAIAANPTYAE--AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 391 l~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
|+-|++...-+.. .|-.....-...|.++.|...|++.|+..+... ++..
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 9999987543322 333444555678999999999999999988766 4443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-13 Score=152.71 Aligned_cols=212 Identities=17% Similarity=0.049 Sum_probs=143.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHH
Q 002443 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (921)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (921)
+|+.+.++..+|..+...|+.++|...+.++.+..|.+ .......+.++...|++++|...++++++..|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 67788888888888888888888888888877776644 445666777888888888888888888888887764422
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (921)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 234 (921)
. +..+..++ ...+....+.+.+......+|.....+..+|.++...|++++|+..++++++..|++..++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 1 11222221 1234444444444443345666677777888888888888888888888888888888888888888
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC
Q 002443 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296 (921)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 296 (921)
+...|++++|+.++++++...|..... ....+..++.++...|++++|+..+++++...
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSML---RGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcch---hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 888888888888888888776642211 11233344445555556666666666654433
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-13 Score=151.49 Aligned_cols=309 Identities=15% Similarity=0.072 Sum_probs=230.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002443 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (921)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (921)
+|+.+.++..+|.++...|+.+++...+.++.+..+.+... .......+..+...|++++|.+.++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE----RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 79999999999999999999999999999999988876543 22345567888899999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 002443 192 PAYYNLGVVYSELMQYD----TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~----~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 267 (921)
.++.. +..+...|++. .+.+.+......+|.....+..+|.++...|++++|+..++++++..|++...+..
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~--- 153 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA--- 153 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH---
Confidence 87775 55555555444 44444444335667778888899999999999999999999999999998655444
Q ss_pred HHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHH---
Q 002443 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACN--- 338 (921)
Q Consensus 268 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~--- 338 (921)
++.++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ......
T Consensus 154 ----la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd05804 154 ----VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA 229 (355)
T ss_pred ----HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH
Confidence 45555557899999999999999876433 35668999999999999999999999876652 222111
Q ss_pred HHHHHHHHcCCHHHHHHH--H-HHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHH
Q 002443 339 NLGVIYKDRDNLDKAVEC--Y-QMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEA 404 (921)
Q Consensus 339 ~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---------~~~~ 404 (921)
.+...+...|....+..+ + .......+. ........+.++...|+.++|...++........ ...+
T Consensus 230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 309 (355)
T cd05804 230 SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGL 309 (355)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhH
Confidence 222333334433333332 1 111111121 2223346788888999999999999887664322 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002443 405 YNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
....+.++...|++++|++.+..++.+-
T Consensus 310 ~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 310 PLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-13 Score=134.27 Aligned_cols=364 Identities=14% Similarity=0.049 Sum_probs=194.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 002443 56 NILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (921)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (921)
.-++.+.+|..|+.+++-.+..+.+.. ....-+|.|++.+|+|++|+..|.-+.+.+.-+.+.+.+++.+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 445677889999998887775544333 5566788899999999999999988888776678888899999999999999
Q ss_pred HHHHHHHHHhcCCCChHhHHHHHH-----------------------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002443 135 AAESYHKALSADPSYKPAAECLAI-----------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (921)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~-----------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (921)
|...-.++ |+++-....+-. -...++.+.+..-.|.+|++.|.+++..+|+..
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 88776654 222221111000 012233444444556666666666666666655
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCh------------
Q 002443 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNF------------ 258 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~------------ 258 (921)
..-.+++.||+++.-|+-+.+.+.-.++..|++.-+...++...+++=+-..|..-.+...+. +.+.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 555666666666666666666666666666666555555555444432211111111111110 0000
Q ss_pred ------------HHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002443 259 ------------EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (921)
Q Consensus 259 ------------~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 326 (921)
+.....+-.+-.++.-.|..+++.++|+.+.+. ++|..+.-+...|.+....|+--...+.++.+
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 000111111222333334445555555554432 34555555555555555555433333332222
Q ss_pred Hh---hC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002443 327 FH---FN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 327 l~---~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
-+ +- -+.......++.+++...++++.+.++...-...-++....+++|.++...|++.+|.+.|-+.-..
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 21 11 1112233344555555555555555555555555555555566666666666666666655544332
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 398 N-PTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (921)
Q Consensus 398 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (921)
. .+.......||.||...|+.+.|.+.|-
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 2 1122233445666666666665555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-13 Score=133.21 Aligned_cols=357 Identities=15% Similarity=0.113 Sum_probs=257.1
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHc
Q 002443 92 LQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170 (921)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~ 170 (921)
+....+|..|+..++-.+..+.+. ......+|.|++..|+|++|...|+-+.+.+.-+.+. ..+++-+++..
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el-------~vnLAcc~FyL 104 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL-------GVNLACCKFYL 104 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc-------chhHHHHHHHH
Confidence 345678888999888877665443 3567788999999999999999999988755444444 55566666666
Q ss_pred CChHHHHHHHHHHHh--------------hC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002443 171 GNTQDGIQKYYEALK--------------ID------------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224 (921)
Q Consensus 171 g~~~~A~~~~~~al~--------------~~------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 224 (921)
|.|.+|...-.++-+ ++ .+..+-...++.+.+..-.|++|++.|++++..+|+.
T Consensus 105 g~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 788888776554321 11 1123445667888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh-----------hcCCHHHHHHHHHH--
Q 002443 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-----------LEGDINQGVAYYKK-- 291 (921)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~-----------~~~~~~~A~~~~~~-- 291 (921)
...-..++.+|+++.-++-+.+.+.--+...|+...+...++..++++-.--. ....+..+..+++.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 99999999999999999999999999999999998887777666655421100 00112222222221
Q ss_pred --------HHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 292 --------ALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 292 --------al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
+++.-| ..+++..++...|..+++..+|+...+ +++|..+.-+...|.+....|+--...+.++-
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 222222 245788899999999999999988776 46899999999999999888865544444443
Q ss_pred HH---hhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 360 AL---SIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 360 al---~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
|- ++- -+.......+|.+++-..++++.+.+++..-...-++....+++|+++...|++.+|.+.|-+.-.
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 33 221 122334567788888889999999999988888888889999999999999999999999987754
Q ss_pred cCCCChhhHhhHHHHhhhccCCChHHHHH
Q 002443 431 IDPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (921)
Q Consensus 431 l~P~~~~a~~~~l~a~~~~~~~~~~~~~~ 459 (921)
.+-.+.-. ...+++..|+..+.++-.|+
T Consensus 422 ~~ikn~~~-Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 422 PEIKNKIL-YKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred hhhhhhHH-HHHHHHHHHHhcCCchHHHH
Confidence 43233222 23356666766655544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=144.12 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=158.0
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-
Q 002443 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC- 117 (921)
Q Consensus 42 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 117 (921)
+.....++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45566889999999999999999999999999999999876 68899999999999999999999999999998776
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002443 118 --AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (921)
Q Consensus 118 --~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (921)
+++.+|.++... |++++|++.|++++..+|++......+ ..++.... .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~----------- 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R----------- 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H-----------
Confidence 789999999876 889999999999999999986653222 11111110 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 002443 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (921)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (921)
.......+|.+|...|++.+|+..++++++..|+. ..+++.+|.++..+|++++|..+++.+....|
T Consensus 165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 01234578888999999999999999999887654 57899999999999999999998888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-14 Score=145.00 Aligned_cols=293 Identities=22% Similarity=0.277 Sum_probs=193.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHH
Q 002443 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYN 196 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 196 (921)
|.-+++.|++...+.+|+.+++...++.. .+..+|..+|+.|+..++|++|+++-..-+.+ .-..+.+--+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~---tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLS---TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHH---HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 56677888888888888888887766543 36677888888888888888888875443322 2223555678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCC--------------------HHHHHHHHHH
Q 002443 197 LGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGD--------------------LESAIACYER 250 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~ 250 (921)
||.++.-+|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 88999999999999988887765432 235788999999988765 2344444444
Q ss_pred HHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHH
Q 002443 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYE 324 (921)
Q Consensus 251 al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~ 324 (921)
-+++..... .....+.++-++|+.|...|+++.|+..-+.-+.+..+. -.++.++|.++.-+|+++.|+++|+
T Consensus 181 NL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 181 NLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 444433222 233456677788888888888888887777666554332 2367777778877888888887777
Q ss_pred HHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 325 LAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (921)
Q Consensus 325 ~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~ 392 (921)
+.+.+. ...+...+.||..|.-..++++|+.++++-+.+.. ....+++.||..+...|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 766541 12245566777777777777777777776665532 224466677777777777777776666
Q ss_pred HHHHhC-----CC-CHHHHHHHHHHHHHcCCHH
Q 002443 393 KAIAAN-----PT-YAEAYNNLGVLYRDAGSIS 419 (921)
Q Consensus 393 ~al~~~-----p~-~~~~~~~la~~~~~~g~~~ 419 (921)
+.++.. +. ...+..++...-..+|..+
T Consensus 340 ~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 340 LHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 665541 11 2334555555555555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-11 Score=134.33 Aligned_cols=332 Identities=14% Similarity=0.062 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHH
Q 002443 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (921)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 163 (921)
.++.--..+...|+|++|.+...+++...|++..+....-.++.+.++|++|+...++-....-.+ ...+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~--------~~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN--------SFFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc--------hhhHHH
Confidence 344444556678999999999999999999999999999999999999999996555432211111 112677
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Q 002443 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER---------------------- 221 (921)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------- 221 (921)
+.|.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++.+
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 888999999999999998 4566667788899999999999999999999885422
Q ss_pred --------C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHhhhhhhhhcCCHHH
Q 002443 222 --------P-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 222 --------p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
| ++.+.+++.+.++...|+|.+|++.+++++.+ +.+..+....+..+...++.++..+|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1 14567899999999999999999999999543 223345666777888888999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHH----HHHHHHHHHcCChH-HHHHHHHHHHhhC----------CCCHHHHHHHHHHHHHcCC
Q 002443 285 GVAYYKKALYYNWHYADAM----YNLGVAYGEMLKFD-MAIVFYELAFHFN----------PHCAEACNNLGVIYKDRDN 349 (921)
Q Consensus 285 A~~~~~~al~~~~~~~~~~----~~la~~~~~~g~~~-~A~~~~~~al~~~----------p~~~~~~~~la~~~~~~g~ 349 (921)
|..+|...++.++.+.... +++-.+-....-++ .++..++...... ..-..++.+.+.+.+..+.
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999988765332 22221111111111 1111111111100 1113455666666666666
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYE 426 (921)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 426 (921)
-+.+.+.....-...|....-.........+...+.+|.+++...-+.+|.. ..+.+.++++...+|+++.|++.+.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666665554444444433222233333333337888888888888888877 6677888888888888888888888
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-11 Score=138.50 Aligned_cols=249 Identities=12% Similarity=0.028 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
.+.++-.+.++...|++++|++.+++....-.+....+-.+|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46677888899999999999999988888788888888899999999999999999999999999999888888887763
Q ss_pred HcC-----CHHHHHHHHHHHHhcCCCChHh--------------------------------------------------
Q 002443 128 DEG-----RLVEAAESYHKALSADPSYKPA-------------------------------------------------- 152 (921)
Q Consensus 128 ~~g-----~~~~A~~~~~~al~~~p~~~~~-------------------------------------------------- 152 (921)
... +.+.-...|++.....|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 322 4555566666665555442111
Q ss_pred --------------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 153 --------------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 153 --------------------------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
...+..+++.++..|...|++++|+++++++|+..|..++.+...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 001112234444455555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHhhhhhhhhcCCHHH
Q 002443 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE--IAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
+.+|.+.++.+..++..+-.+....+..+++.|+.++|.+.+......+.+.. .......+.....|..+...|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 55555555555555555555555555555555555555555544433321111 1111223444667788888899999
Q ss_pred HHHHHHHHHHhC
Q 002443 285 GVAYYKKALYYN 296 (921)
Q Consensus 285 A~~~~~~al~~~ 296 (921)
|+..|....+..
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-11 Score=122.91 Aligned_cols=300 Identities=13% Similarity=0.053 Sum_probs=210.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHH
Q 002443 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGV 199 (921)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 199 (921)
.-|..-+..|+|.+|++...+.-+..+...- .+..-+......|+++.|-.++.++-+..++ ........+.
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l-------~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVL-------AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHH-------HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 3344555667777777777776555444322 2444455556667777777777777776333 3455666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHhhhhhhhh
Q 002443 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKL 278 (921)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~lg~~~~~ 278 (921)
+....|++..|.....++++..|.++.++.....+|...|++.+...++.+.-+..--... .....-.++..+-+-...
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 7777888888888888888888888888877788888888887777777766554322111 111111111111111111
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (921)
.+..+.-..+++..-..-..++.+...++.-+...|+.++|.+..+.+++..-+.. ....++ ...-++...=++..+
T Consensus 242 ~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e 318 (400)
T COG3071 242 DNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAE 318 (400)
T ss_pred cccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHH
Confidence 12222223344444444455678888899999999999999999999998755432 222222 235688899999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002443 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 359 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
+.++..|+++..+..||..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 778899999999999999999999999854
|
|
| >PLN02949 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.6e-13 Score=149.94 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=140.2
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhH----cCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002443 660 ITFGSFNN--LAKITPKVLQVWARILCA----VPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 660 ~~~~~~~~--~~K~~~~~~~~~~~il~~----~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
.+|.+.++ ..|..+..+++|+++++. .|+.+|+|+|++.. +....+.|++.++++|+. ++|.|.|.++ .+
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~-~~V~f~g~v~-~~ 346 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD-GDVEFHKNVS-YR 346 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC-CcEEEeCCCC-HH
Confidence 34666665 489999999999998764 47899999987532 234457888999999997 8999999986 57
Q ss_pred HHHHhcccccEEecCCC-CCCcccHHHHhhcCCcEEecCCCcccccchhHH---Hhh--cCCcccccCCHHHHHHHHHHH
Q 002443 732 DHMQAYSLMDISLDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL---LTK--VGLKHLIAKNEDEYVQLALQL 805 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~-~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~---l~~--~gl~~~i~~~~~~y~~~a~~l 805 (921)
+....|+.+|+++-|.- .+.|.+.+|||++|+|||+ ++.|+-. ... -|...+++.|.+++.+...++
T Consensus 347 el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa-------~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~l 419 (463)
T PLN02949 347 DLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIA-------HNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEV 419 (463)
T ss_pred HHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEE-------eCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHH
Confidence 88889999999998874 4889999999999999997 3333211 111 145567778999999999999
Q ss_pred hc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002443 806 AS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 806 ~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 847 (921)
.+ |++.+.+++++.|++.. .|+.+.|+++++++|+.+..
T Consensus 420 l~~~~~~r~~m~~~ar~~~~---~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 420 LRMRETERLEIAAAARKRAN---RFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred HhCCHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHh
Confidence 98 57888899999988752 39999999999999988754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-11 Score=151.80 Aligned_cols=385 Identities=12% Similarity=-0.019 Sum_probs=276.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH
Q 002443 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 50 ~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~ 128 (921)
.....|..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...++.+- .....++......+.++..
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3445567788899999998876654111 1122445556777788898888777665531 1112344556777888899
Q ss_pred cCCHHHHHHHHHHHHhcCCCCh--HhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 002443 129 EGRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVY 201 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 201 (921)
.|++++|...+.++....+... ......+.+...++.++...|++++|...+++++...+.. ..+...+|.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 9999999999998876543211 0111134445567888899999999999999999854432 23567789999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHhhhh
Q 002443 202 SELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGT 274 (921)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~lg~ 274 (921)
...|++++|...+++++..... ...++..+|.++...|++++|...+++++........ .......++..++.
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 9999999999999999875332 1346678899999999999999999999886432210 00011223445677
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHH----HHHHH
Q 002443 275 KVKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGV 342 (921)
Q Consensus 275 ~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~ 342 (921)
++...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.... .... .....
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 778889999999999999875332 24466778999999999999999999997763321 1111 11234
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHH
Q 002443 343 IYKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLY 412 (921)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la~~~ 412 (921)
.+...|+.++|..++.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45568999999999877655332222 2256789999999999999999999988621 2356788999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCC
Q 002443 413 RDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 413 ~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
...|+.++|...+++++++....
T Consensus 742 ~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999987654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=141.08 Aligned_cols=269 Identities=25% Similarity=0.302 Sum_probs=211.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 002443 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNM 231 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 231 (921)
.-|.-+++.|+....+..|+.+++...++ ..+|..||..|+.+++|++|+++-..=+.+ .-......-++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 34677888999999999999999987765 456888999999999999999986543322 22345567789
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCC--------------------HHHHHHHHHH
Q 002443 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYYKK 291 (921)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~--------------------~~~A~~~~~~ 291 (921)
|.++.-+|.|++|+.+..+-+.+..+.. .....+.+++++|.+|...|+ ++.|.++|..
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887654432 233446677777777766543 3456666666
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 292 ALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 292 al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
-+++.... ..++-+||..|+-+|+|+.|+..-+.-+.+... .-.++.++|.++.-.|+++.|+++|++
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 66553332 246888999999999999999998877766332 246888999999999999999999999
Q ss_pred HHhhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 360 ALSIK----P--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 360 al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
.+.+. . ..+...+.||..|.-..++++|+.++.+-+.+.. ....+++.||..+..+|..++|+.+.++
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 87653 2 2356788999999999999999999998877632 3467899999999999999999999998
Q ss_pred Hhhc
Q 002443 428 CLKI 431 (921)
Q Consensus 428 al~l 431 (921)
.+++
T Consensus 341 hl~~ 344 (639)
T KOG1130|consen 341 HLRS 344 (639)
T ss_pred HHHH
Confidence 8775
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-12 Score=150.28 Aligned_cols=288 Identities=14% Similarity=0.086 Sum_probs=222.6
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHH
Q 002443 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (921)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (921)
.+|.+..++..+...+...+++++|++.++.+++..|+....++.+|.++.+.+++.++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 46888999999999999999999999999999999999999999999999999997777766 555555443
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (921)
.++ .+++++...+...+++..+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 334 55666666666678888899999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 002443 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (921)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 316 (921)
.. ++++|++++.+++... ...+++.++.+++.+.+..+|++.+.+..+-......-.+
T Consensus 162 e~-dL~KA~~m~~KAV~~~---------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRF---------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF 219 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHH---------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc
Confidence 99 9999999999998651 2245888999999999999998877654433322222112
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002443 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (921)
Q Consensus 317 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 396 (921)
..+ ...+.-+-..|...++|++++.+++.+++.+|.+..+...++.+|. +.|.. ...++..++
T Consensus 220 ~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 220 TRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred chh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 222 3455566677888889999999999999999999999999998887 33333 444444444
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhh
Q 002443 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 438 (921)
+. .+-..-.++..|+..|++.+..++.+--.
T Consensus 283 ~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 283 MS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred Hh-----------ccccCCccHHHHHHHHHHHeeecCCCEEE
Confidence 32 11112245678888888888888876433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=136.66 Aligned_cols=182 Identities=16% Similarity=0.077 Sum_probs=146.5
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhH
Q 002443 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (921)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 153 (921)
.++..+..++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|++...
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 3456788999999999999999999999999999999876 578999999999999999999999999999988764
Q ss_pred HHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002443 154 ECLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (921)
Q Consensus 154 ~~la~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (921)
..+++.+|.++... |++++|++.|++++..+|++..++..+..+.... .. ..
T Consensus 107 ---~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~ 166 (235)
T TIGR03302 107 ---DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LA 166 (235)
T ss_pred ---HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HH
Confidence 22356667776655 7899999999999999999876654333221111 00 11
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHhhhhhhhhc
Q 002443 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKVKLE 279 (921)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~lg~~~~~~ 279 (921)
.....+|.++...|++.+|+..++++++..|+. ..++..++.++..+|+.....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 234578999999999999999999999997754 578899999999988765443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=128.27 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=89.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002443 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (921)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 399 (921)
...++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34566666666653 445677777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHh
Q 002443 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (921)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~ 446 (921)
+++.+++++|.++..+|++++|+..|++++++.|+++..+.++..+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77777777777777777777777777777777777777766654443
|
|
| >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=148.00 Aligned_cols=268 Identities=18% Similarity=0.158 Sum_probs=177.0
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcC--CCceEEeeccC---CCCC----------CCCCccEEEecCC--CC
Q 002443 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGY---PNTT----------GLPTIDYRITDSL--AD 618 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r--~ApvQ~~~~G~---p~tt----------G~~~~Dy~i~d~~--~~ 618 (921)
..+.+.|...++||+.--+.++...-..+++.| ..|+-.+.-|. +... .....|.+|+-.. .+
T Consensus 78 ~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 157 (398)
T cd03796 78 PLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKE 157 (398)
T ss_pred HHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhh
Confidence 346667778899998644433332222333333 34554444332 1111 1234566654211 11
Q ss_pred CC-CcccCcccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEE
Q 002443 619 PP-ETKQKHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVV 693 (921)
Q Consensus 619 p~-~~~~~~~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~ 693 (921)
-. .....-.+++..+|+..-. |.|.... ..++.+++++++++ .|..+.+++++..+.+..|+.+|++
T Consensus 158 ~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~--------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i 229 (398)
T cd03796 158 NTVLRASLDPERVSVIPNAVDSSDFTPDPSK--------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII 229 (398)
T ss_pred HHHHHhCCChhhEEEEcCccCHHHcCCCccc--------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE
Confidence 00 0011224567788864210 2221110 23455678887765 7889999999999998999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCc
Q 002443 694 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 772 (921)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~ 772 (921)
+|.+ ...+.+++..++.|++ ++|.|.|.++ .++....|..+|+++-|+.+ +.|.+.+|||+||+|||+
T Consensus 230 ~G~g----~~~~~l~~~~~~~~l~-~~v~~~G~~~-~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~----- 298 (398)
T cd03796 230 GGDG----PKRILLEEMREKYNLQ-DRVELLGAVP-HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVS----- 298 (398)
T ss_pred EeCC----chHHHHHHHHHHhCCC-CeEEEeCCCC-HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEE-----
Confidence 9875 3567788888999998 8999999986 57889999999999988766 668899999999999997
Q ss_pred ccccchh--HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002443 773 HAHNVGV--SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 773 ~~~r~~~--~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 847 (921)
+.+++ -++.. |-.-++..|.+++.+...++.++......+++..++.... .|+++..++++.+.|+.+..
T Consensus 299 --s~~gg~~e~i~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 299 --TRVGGIPEVLPP-DMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKK--MYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred --CCCCCchhheeC-CceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHhc
Confidence 44330 01111 1122345688999999999998876665666777766543 49999999999999987653
|
Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-10 Score=119.14 Aligned_cols=298 Identities=14% Similarity=0.007 Sum_probs=194.7
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGI 124 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 124 (921)
..+......|..-+..|+|.+|.+...+.-+..+....++..-+.+.-..|+++.|-.++.++-+..++ .......++.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 345566677888888999999999999988877777778888889999999999999999999998443 4567888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHHHHHH-
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---AYYNLGVV- 200 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~- 200 (921)
+....|+++.|..-..++++..|.++.. +.....+|...|++.+...++.+.-+..--+.+ -+-+.+..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~v-------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEV-------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHH-------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999886 555566777889999999988887665332211 11111111
Q ss_pred -HHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhh
Q 002443 201 -YSELMQYDTA---LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (921)
Q Consensus 201 -~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 276 (921)
+.+.++-+.+ ..+++..-..-.+++.....++.-+..+|+.++|.+..+.+++..-+.. +...+-.
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~----- 304 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR----- 304 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-----
Confidence 1112221112 2233333333334567777778888888888888888888887655432 1111111
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (921)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (921)
..-++...-++..++.++..|+++..+..||.++.+.+.+.+|..+++.+++..|+ ...+..+|.++.+.|+..+|.+.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHH
Confidence 11234455555555555555555555555555555555555555555555554443 34444555555555555555555
Q ss_pred HHHHH
Q 002443 357 YQMAL 361 (921)
Q Consensus 357 ~~~al 361 (921)
+++++
T Consensus 384 r~e~L 388 (400)
T COG3071 384 RREAL 388 (400)
T ss_pred HHHHH
Confidence 55544
|
|
| >TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-12 Score=142.22 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=135.6
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC----CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCC
Q 002443 656 TNGFITFGSFNNL--AKITPKVLQVWARILCAVP----NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 729 (921)
Q Consensus 656 ~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p----~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~ 729 (921)
.++.++++++.++ .|..+.+++++.+++++.| +.+|+++|.+ ..++.+.+.+++.|+. ++|.|.|..
T Consensus 191 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~-- 263 (374)
T TIGR03088 191 ADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDG----PARGACEQMVRAAGLA-HLVWLPGER-- 263 (374)
T ss_pred CCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCC----chHHHHHHHHHHcCCc-ceEEEcCCc--
Confidence 4556677777755 7889999999999998876 6799998865 3557788888999997 889998864
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhH-HHhhcCCcccc--cCCHHHHHHHHHHH
Q 002443 730 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI--AKNEDEYVQLALQL 805 (921)
Q Consensus 730 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~i--~~~~~~y~~~a~~l 805 (921)
.+....|..+|+++-|+-+ +.|.+.+|||+||+|||+ +++++. =+-.-|...++ ..|.+++.+....+
T Consensus 264 -~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-------s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l 335 (374)
T TIGR03088 264 -DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIA-------TAVGGNPELVQHGVTGALVPPGDAVALARALQPY 335 (374)
T ss_pred -CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEE-------cCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 4667777889999988755 679999999999999997 555410 01111233333 35899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002443 806 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 806 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 845 (921)
.+|++.+..++.+.|+.+.. .|+++.+++++++.|+.+
T Consensus 336 ~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 336 VSDPAARRAHGAAGRARAEQ--QFSINAMVAAYAGLYDQL 373 (374)
T ss_pred HhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 99999999999988887643 599999999999999864
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-13 Score=125.54 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002443 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
...++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999988874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-11 Score=132.97 Aligned_cols=312 Identities=12% Similarity=0.030 Sum_probs=212.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHH
Q 002443 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (921)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (921)
+.+++.....++...|++++|++.+++..+.-.+....+...|.++..+|++++|...|+..++.+|++...+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45788889999999999999999999988888889999999999999999999999999999999999988755544433
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002443 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
.... -....+.+.-...|++.....|...... .+...+..-..+.. +..++...+.. .-|....++-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChh
Confidence 2111 0112356777888888887787643332 22222222223433 33344444433 34556666666666444
Q ss_pred CHHHHHHHHHHHHHh---CCC----h---HHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 240 DLESAIACYERCLAV---SPN----F---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (921)
Q Consensus 240 ~~~~A~~~~~~al~~---~p~----~---~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 309 (921)
+..-....+...... ... . ......+.++++-++..+...|++++|+++.+++++..|..++.|...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333332221 100 0 011122344566667777777788888888888888888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHH
Q 002443 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---------SQSLNNLGVVYTV 380 (921)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~ 380 (921)
+...|++.+|...++.+-.++..+-.+....+..+.+.|+.++|.+.+....+.+.+. .......|.+|.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887777888888888888888888777765544211 1123446777888
Q ss_pred cCCHHHHHHHHHHHHHh
Q 002443 381 QGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 381 ~g~~~~A~~~l~~al~~ 397 (921)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 88888888888777765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=149.76 Aligned_cols=343 Identities=13% Similarity=0.083 Sum_probs=198.9
Q ss_pred CCCceeeccCC-Ccccchh--hhhhhcccccccCCceEEEEEecccCCChhhHHHHH-HHhhh-CCeeEEc---cCCCHH
Q 002443 485 ERPLVIGYVSP-DYFTHSV--SYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE-KVMKK-GGIWRDI---YGIDEK 556 (921)
Q Consensus 485 ~~~lriGyvS~-df~~H~v--~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~-~~~~~-~~~~~~~---~~~~~~ 556 (921)
.+++||..+.. .+..|.. ...+..+.+.+.....||++.+...........++- .+... ...+..+ .... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~ 134 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALS-P 134 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCC-H
Confidence 67889997743 2333333 234455666666677888888765332110000000 00000 0000000 0111 2
Q ss_pred HHHHHHHhCCccEEEecCC-CCCCCchhhhhcCCCceEEeeccCCCCC----CC---------------CCccEEEecCC
Q 002443 557 KVAAMVREDKIDILVELTG-HTANNKLGMMACQPAPVQVTWIGYPNTT----GL---------------PTIDYRITDSL 616 (921)
Q Consensus 557 ~~a~~i~~d~idiLvdl~g-~t~~~r~~~~a~r~ApvQ~~~~G~p~tt----G~---------------~~~Dy~i~d~~ 616 (921)
.+.+.|+..++||+.--+. .+....+.+....-.|+-+++-++.... +. ...|.+|+-..
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~ 214 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSP 214 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCH
Confidence 6788899999999863221 1111111111233457777665542111 00 12355554211
Q ss_pred CCCCCcccCc---ccceEEcCCCcc--ccCCCCCCCCCCC-CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC
Q 002443 617 ADPPETKQKH---VEELIRLPECFL--CYTPSPEAGPVCP-TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN 688 (921)
Q Consensus 617 ~~p~~~~~~~---~e~~~~lp~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~ 688 (921)
..-......+ .+++..+|+..- .|.|.......+. ......+.++++.+.++ .|.. +.+.++++..|+
T Consensus 215 ~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~----~~li~a~~~~~~ 290 (465)
T PLN02871 215 ALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNL----DFLKRVMERLPG 290 (465)
T ss_pred HHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhH----HHHHHHHHhCCC
Confidence 1000111222 456666675321 1222211110000 01112244556777765 5554 444556677899
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEe
Q 002443 689 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT 767 (921)
Q Consensus 689 ~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt 767 (921)
.+|+|+|.+ +.++.+++.++. .+|.|+|.++ .++....|..+||++-|+.+ +.|.+.+|||++|+|||+
T Consensus 291 ~~l~ivG~G----~~~~~l~~~~~~-----~~V~f~G~v~-~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~ 360 (465)
T PLN02871 291 ARLAFVGDG----PYREELEKMFAG-----TPTVFTGMLQ-GDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVA 360 (465)
T ss_pred cEEEEEeCC----hHHHHHHHHhcc-----CCeEEeccCC-HHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEE
Confidence 999999875 455566555442 4799999987 57889999999999988866 668899999999999997
Q ss_pred cCCCcccccchh--HHHhh--cCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH-
Q 002443 768 MAGSVHAHNVGV--SLLTK--VGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES- 840 (921)
Q Consensus 768 ~~g~~~~~r~~~--~~l~~--~gl~~~i~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~- 840 (921)
+++++ -++.. .|-..++. .|.+++.+....|.+|++.+..+++..++... -|+++..++++++
T Consensus 361 -------s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~a~~l~~~ 430 (465)
T PLN02871 361 -------ARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAATRKLRNE 430 (465)
T ss_pred -------cCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHH
Confidence 44442 12221 14444553 58999999999999999999999999988753 3999999999997
Q ss_pred HHHHHHHHHhcC
Q 002443 841 TYRNMWHRYCKG 852 (921)
Q Consensus 841 ~~~~~~~~~~~~ 852 (921)
.|++++.+|.+.
T Consensus 431 ~Y~~~~~~~~~~ 442 (465)
T PLN02871 431 QYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHH
Confidence 799998887654
|
|
| >PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=147.77 Aligned_cols=172 Identities=15% Similarity=0.082 Sum_probs=141.1
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++++++.++ .|..+.+++++..+.++.|+.+|+++|.+ +.++.+++.++++|++ ++|.|.|.++ +++...
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G----~~~~~l~~~~~~~~l~-~~V~~~G~~~-~~el~~ 294 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIG----PWERRLRTLIEQYQLE-DVVEMPGFKP-SHEVKA 294 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECc----hhHHHHHHHHHHcCCC-CeEEEeCCCC-HHHHHH
Confidence 44566777765 79999999999999888899999999876 5678899999999997 8999999987 678899
Q ss_pred hcccccEEecCCC-------CCCcccHHHHhhcCCcEEecCCCcccccchhH-HHhhcCCccccc--CCHHHHHHHHHHH
Q 002443 736 AYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIA--KNEDEYVQLALQL 805 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~i~--~~~~~y~~~a~~l 805 (921)
.|..+|+++-|+- .+.+++.+|||++|+|||+ +++++. =+-.-|-..++. .|.+++.+...+|
T Consensus 295 ~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~-------t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l 367 (406)
T PRK15427 295 MLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS-------TLHSGIPELVEADKSGWLVPENDAQALAQRLAAF 367 (406)
T ss_pred HHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE-------eCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 9999999998874 4668899999999999998 555510 011113333443 5899999999999
Q ss_pred hc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 806 AS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 806 ~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
.+ |++.+.+++++.|+.+.+. |+++..++.+++.|++
T Consensus 368 ~~~d~~~~~~~~~~ar~~v~~~--f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 368 SQLDTDELAPVVKRAREKVETD--FNQQVINRELASLLQA 405 (406)
T ss_pred HhCCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhh
Confidence 99 9999999999999887644 9999999999999875
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.8e-11 Score=117.23 Aligned_cols=361 Identities=16% Similarity=0.130 Sum_probs=240.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (921)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (921)
.+.+..+|.+|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-.+.|......+..+..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999988889999999999999998
Q ss_pred HHHHHHHhc----------------CCCCh-HhH--------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002443 137 ESYHKALSA----------------DPSYK-PAA--------ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (921)
Q Consensus 137 ~~~~~al~~----------------~p~~~-~~~--------~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (921)
......... ..++. ... ..-+....+.|-+.++.|++++|++.|+.+++...-++
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 776554321 11100 000 01123455677778888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHHHHHHHCCCHH
Q 002443 192 PAYYNLGVVYSELMQYDTALGCYEKAALE----RPMY-------------------------AEAYCNMGVIYKNRGDLE 242 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~-------------------------~~~~~~la~~~~~~g~~~ 242 (921)
..-++++.++++.++++.|+++...+++. +|.. .++.+..+.++++.++++
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 88888888888888888888887777652 2321 245666777888888888
Q ss_pred HHHHHHHHHHHhCCC--hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002443 243 SAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (921)
Q Consensus 243 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 320 (921)
.|.+.+...--.... ++....+++.. + ..+++.+...-++-.+.++|--.+...++-.+|++..-|+.|.
T Consensus 259 AA~eaLtDmPPRaE~elDPvTLHN~Al~--n------~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 259 AAQEALTDMPPRAEEELDPVTLHNQALM--N------MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred HHHHHhhcCCCcccccCCchhhhHHHHh--c------ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHH
Confidence 887765433211111 22233333221 1 2356777777777778888877788888888888887777776
Q ss_pred HHHHHHHhhCCCC-----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHH--c---CCHHHHH
Q 002443 321 VFYELAFHFNPHC-----AEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYTV--Q---GKMDAAA 388 (921)
Q Consensus 321 ~~~~~al~~~p~~-----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--~---g~~~~A~ 388 (921)
..+.+ +|+. ....+.+-..+. ..-..++|.+-+.+.-+. ...-+..++ .+... . .....|+
T Consensus 331 DvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 331 DVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 65543 3322 122233333332 234555555544443221 111111111 11111 1 1133455
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002443 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 389 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
+.|++++++. ..+....+.+|+...++..+.+.|++..+...++
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 5566665542 3466778888888999998888888888776654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-10 Score=143.68 Aligned_cols=348 Identities=13% Similarity=-0.019 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------CHHH
Q 002443 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 118 (921)
..+...+..+...|++..+..+++.+-. ....++......+.++...|++++|...+..+....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 4445567777788888887777665411 11234455677888889999999999999988765321 1344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHH
Q 002443 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 192 (921)
...++.++...|++++|...+++++...+.... ...+.....+|.++...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788889999999999999999986554322 223445677889999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHH
Q 002443 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (921)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (921)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++......... .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~ 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ--Q 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch--H
Confidence 6678899999999999999999999875221 23346678999999999999999999998865432111 1
Q ss_pred HHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC---HHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---
Q 002443 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--- 334 (921)
Q Consensus 265 la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 334 (921)
....+..++.++...|++++|...+.++....... .... ......+...|+.+.|...+.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23455667888888999999999999997753321 1111 1122445568899999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002443 335 -EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 335 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 2256789999999999999999999988632 23457888999999999999999999999998654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-12 Score=127.15 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=130.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002443 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353 (921)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 353 (921)
-.|...|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.+|...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34566677777644432221 1110 111367789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 354 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|++..+++.+|..+...|++++|+.+|+++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67787 59999999999999999999999999999999999999999999999
Q ss_pred cCCCChh
Q 002443 431 IDPDSRN 437 (921)
Q Consensus 431 l~P~~~~ 437 (921)
++|.+.+
T Consensus 173 l~~~~~~ 179 (198)
T PRK10370 173 LNSPRVN 179 (198)
T ss_pred hCCCCcc
Confidence 9987653
|
|
| >cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=142.87 Aligned_cols=339 Identities=16% Similarity=0.100 Sum_probs=214.2
Q ss_pred eeeccCCCcccc--hhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhh-----hCCeeEEccCCCHHHHHHH
Q 002443 489 VIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMK-----KGGIWRDIYGIDEKKVAAM 561 (921)
Q Consensus 489 riGyvS~df~~H--~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~ 561 (921)
||.+++..+..+ .....+..+.+.+....++|.+++.................. ....+..........+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 355666665544 234455556666666778888887654432211110000000 0000000000112456778
Q ss_pred HHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCC------------------CCCccEEEecCCCCCCCcc
Q 002443 562 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------------LPTIDYRITDSLADPPETK 623 (921)
Q Consensus 562 i~~d~idiLvdl~g~t~~~r~~~~a~r~ApvQ~~~~G~p~ttG------------------~~~~Dy~i~d~~~~p~~~~ 623 (921)
+...++||++-...+...........+-.|+-+.+.+...... +...|++++-....-....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 8889999999887777655543344556677666655443221 2345777653322222223
Q ss_pred cCcc---cceEEcCCCccccCCCCCC-CCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCC
Q 002443 624 QKHV---EELIRLPECFLCYTPSPEA-GPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKP 697 (921)
Q Consensus 624 ~~~~---e~~~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 697 (921)
..+. .++..+|+..- ....... .............++++.+++ ..|..+.++++|..+....|+.+|++.|.+
T Consensus 161 ~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~ 239 (374)
T cd03801 161 ELGGVPPEKITVIPNGVD-TERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG 239 (374)
T ss_pred hcCCCCCCcEEEecCccc-ccccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc
Confidence 3333 46777776421 1110000 000112233344455666664 588899999999999999999999999854
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCccccc
Q 002443 698 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHN 776 (921)
Q Consensus 698 ~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r 776 (921)
.....+.+.+.+.++. ++|.|.|.++ .++....+..+|+++.|..+ +.+++.+|||++|+|||+-....+..
T Consensus 240 ----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~- 312 (374)
T cd03801 240 ----PLREELEALAAELGLG-DRVTFLGFVP-DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPE- 312 (374)
T ss_pred ----HHHHHHHHHHHHhCCC-cceEEEeccC-hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhH-
Confidence 5566777777788886 8999999987 68899999999999999977 66889999999999999865433322
Q ss_pred chhHHHhhcCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002443 777 VGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 777 ~~~~~l~~~gl~~~i~~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 842 (921)
++.. +-..++.. |.+++++....+..|++.+.++++..++...+. |+++.+++.+.+.|
T Consensus 313 ----~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 373 (374)
T cd03801 313 ----VVED-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAER--FSWDRVAARTEEVY 373 (374)
T ss_pred ----HhcC-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHhh
Confidence 1221 22334433 469999999999999999999999888665444 89999999998876
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-09 Score=115.96 Aligned_cols=378 Identities=14% Similarity=0.161 Sum_probs=216.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
-++.|+.....+..+|+...-...|++++..-|- +..+|-..-......+-.+-++..|++.++..|...+- ...
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee---yie 177 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE---YIE 177 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH---HHH
Confidence 4577888899999999999999999999987763 44566666666677788889999999999998876443 345
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC-------CChHh-------------------------------HHHHHHHHHHHHHH
Q 002443 125 LYKDEGRLVEAAESYHKALSADP-------SYKPA-------------------------------AECLAIVLTDLGTS 166 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p-------~~~~~-------------------------------~~~la~~~~~lg~~ 166 (921)
.+...+++++|.+.|...+..+. .+... ...++.++..|+..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 56778888888888877654321 11111 12234567789999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC---CHHHH-----HHHH----------------------------------------
Q 002443 167 LKLAGNTQDGIQKYYEALKIDPH---YAPAY-----YNLG---------------------------------------- 198 (921)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~-----~~la---------------------------------------- 198 (921)
|...|.+++|...|++++..--. ...++ +.-.
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 99999999999999998765111 10000 0000
Q ss_pred -----------------HHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 002443 199 -----------------VVYSELMQYDTALGCYEKAAL-ERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (921)
Q Consensus 199 -----------------~~~~~~g~~~~A~~~~~~al~-~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (921)
.+-...|+..+-+..|..+++ .+|. ....|..+|..|...|+.+.|...|+++.+..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 011112333344444444433 1222 12455555666666666666666666665543
Q ss_pred CChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCChH
Q 002443 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH------------------YADAMYNLGVAYGEMLKFD 317 (921)
Q Consensus 256 p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~g~~~ 317 (921)
-.. ...++.++...+.......+++.|+.+.+++...-.. +..+|..++......|-++
T Consensus 418 y~~---v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 418 YKT---VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred ccc---hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 222 2234445555555555555666666655555432110 1224555555555555666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH---HHcCCHHHHHHHHH
Q 002443 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--PNFSQSLNNLGVVY---TVQGKMDAAAEMIE 392 (921)
Q Consensus 318 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~---~~~g~~~~A~~~l~ 392 (921)
.....|++.+.+.--.+....+.|..+....-+++|.+.|++.+.+. |.-.++|...-..+ +.-...+.|..+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 66666666666555555566666666666666666666666665553 23333443322222 12234556666666
Q ss_pred HHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 393 KAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 393 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
++++..|.. ..++...+.+-.+-|-...|+..|++|-.
T Consensus 575 qaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 575 QALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 666655421 12344445555555666666666665543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-11 Score=143.16 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=181.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHH
Q 002443 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (921)
Q Consensus 186 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (921)
.+|.+..++..|...|...+++++|+..++.+++..|+....++.+|.++.+.++++++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 47888999999999999999999999999999999999999999999999999998887766 555554442
Q ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002443 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (921)
Q Consensus 266 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (921)
.++ .+++++-..+...+.+..+++.+|.+|.++|+.++|...|+++++.+|+++.+++++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 244 55555655666677777889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------------H
Q 002443 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------------------Y 405 (921)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~--------------------~ 405 (921)
.. +.++|++++.+|+.. +...+++.++.+++.+.+..+|++.+. +
T Consensus 162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 88 999999999998876 566678888888888888888876443 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHH
Q 002443 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (921)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l 443 (921)
.-+-..|...+++++++..++.+|+++|+|..+...+.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 22337788888999999999999999999888877654
|
|
| >cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-12 Score=138.41 Aligned_cols=319 Identities=15% Similarity=0.140 Sum_probs=191.9
Q ss_pred eeeccCCCcc-cchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEEc----------cCCCHHH
Q 002443 489 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI----------YGIDEKK 557 (921)
Q Consensus 489 riGyvS~df~-~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 557 (921)
||.++++.+. .--+...+..+.+......++|++++....... ....... -.+..+ .-.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPP-FYELDPK-----IKVIDLGDKRDSKLLARFKKLRR 74 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCC-ccccCCc-----cceeecccccccchhccccchHH
Confidence 3566666665 222233344455555556788888766544200 0000000 011111 1123367
Q ss_pred HHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCC------------CCCccEEEecCCCCCCCcccC
Q 002443 558 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQK 625 (921)
Q Consensus 558 ~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~ApvQ~~~~G~p~ttG------------~~~~Dy~i~d~~~~p~~~~~~ 625 (921)
+.+.|+..++|+++-..++ ...-+..+..+..|+=+..-+.+.... +...|.+++..-..-......
T Consensus 75 ~~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 153 (348)
T cd03820 75 LRKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKK 153 (348)
T ss_pred HHHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhcc
Confidence 8888999999999987766 112222222222244333323222221 345677775422111112234
Q ss_pred cccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 002443 626 HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 703 (921)
Q Consensus 626 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~ 703 (921)
+..++..+|+..- .... ... ..++..+|+++.+ ..|..+.++++|.++.+..|+.+|++.|.+ ..
T Consensus 154 ~~~~~~vi~~~~~-~~~~--~~~------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~ 220 (348)
T cd03820 154 FNKNVVVIPNPLP-FPPE--EPS------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG----PE 220 (348)
T ss_pred CCCCeEEecCCcC-hhhc--ccc------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC----CC
Confidence 4566777775421 1110 000 1233334555543 488999999999999998999999999865 23
Q ss_pred HHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHH
Q 002443 704 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 782 (921)
Q Consensus 704 ~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l 782 (921)
...+.+...+.|+. ++|.|.|. .++....|..+|+++-|..+ +.|++++|||++|+|||+-..... ...+
T Consensus 221 ~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~-----~~~~ 291 (348)
T cd03820 221 REALEALIKELGLE-DRVILLGF---TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTG-----PSEI 291 (348)
T ss_pred HHHHHHHHHHcCCC-CeEEEcCC---cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCc-----hHhh
Confidence 45566677888887 89999987 35777888889999999877 669999999999999998331111 1112
Q ss_pred hhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002443 783 TKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 783 ~~~gl~~~i~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 839 (921)
..-|-..++. .|.+++++...++.+|++.+..+++..++.. .-|+++.+++.++
T Consensus 292 ~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 347 (348)
T cd03820 292 IEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESA---ERFSIENIIKQWE 347 (348)
T ss_pred hccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HHhCHHHHHHHhc
Confidence 2223234443 4669999999999999999999998886543 2388888777664
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. |
| >cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.8e-11 Score=133.21 Aligned_cols=335 Identities=11% Similarity=0.024 Sum_probs=200.2
Q ss_pred eeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhh--HHHHHHHhhhCCeeEEccCCCHHH---H----H
Q 002443 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT--IRFREKVMKKGGIWRDIYGIDEKK---V----A 559 (921)
Q Consensus 489 riGyvS~df~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~----a 559 (921)
||.++++.+..=-+...+..+.+..++.+.|+.+|...+..+... .++...+ . +... .++... . .
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~--g~~~---~~~~~~~~~~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL-Q--GADI---ELSEEEKEIYLEWNE 74 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh-c--CCCC---CCCHHHHHHHHHHHH
Confidence 466777777666667777778888888889998887655332211 1111111 1 1111 222221 1 1
Q ss_pred HH----HHhCCccEEEecCCCCCCCchhhhhcC-CCceEEeeccCCCCC----------CCCCccEEEecCCCCCCCccc
Q 002443 560 AM----VREDKIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTT----------GLPTIDYRITDSLADPPETKQ 624 (921)
Q Consensus 560 ~~----i~~d~idiLvdl~g~t~~~r~~~~a~r-~ApvQ~~~~G~p~tt----------G~~~~Dy~i~d~~~~p~~~~~ 624 (921)
.. +...+.||++-=+.+ ..-+..+..+ ..|+=+++-+...+. .+...|.+++-. +.....
T Consensus 75 ~~~~~~~~~~~~Dvv~~h~~~--~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~~ 149 (372)
T cd03792 75 ENAERPLLDLDADVVVIHDPQ--PLALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVPP 149 (372)
T ss_pred HHhccccccCCCCEEEECCCC--chhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcCC
Confidence 11 225689999732211 1112222222 455443332211110 012245444321 111222
Q ss_pred CcccceEEcCCCccccCCC--CCCC----CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecC
Q 002443 625 KHVEELIRLPECFLCYTPS--PEAG----PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCK 696 (921)
Q Consensus 625 ~~~e~~~~lp~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~ 696 (921)
.+..+.+.+|+..=...+. ...+ ..+...+++.+..+++.+.++ .|..+.+++++..+.+..|+.+|+++|.
T Consensus 150 ~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~ 229 (372)
T cd03792 150 QVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGS 229 (372)
T ss_pred CCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeC
Confidence 2332333666531100000 0000 011123455666678888866 8899999999999999889999999987
Q ss_pred CCCCHH-HHHHHHHHHHHcCCCCCCEEEccCcC-CcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcc
Q 002443 697 PFCCDS-VRHRFLSTLEQLGLESLRVDLLPLIL-LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH 773 (921)
Q Consensus 697 ~~~~~~-~~~~~~~~~~~~gi~~~rv~~~~~~~-~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~ 773 (921)
+...+. ....+.+..+..|+. ++|.|.+... +.++....|+.+|+++-|..+ +.|.+++|||++|+|||+
T Consensus 230 g~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~------ 302 (372)
T cd03792 230 GATDDPEGWIVYEEVLEYAEGD-PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIA------ 302 (372)
T ss_pred CCCCCchhHHHHHHHHHHhCCC-CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEE------
Confidence 643222 222233333356776 7899988763 356777888999999988877 669999999999999998
Q ss_pred cccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 774 AHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 774 ~~r~~~-~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
+++++ .-+-.-|...+++.+.++......++.+|++.++.+++..++.... .|++...++++.+.|+.
T Consensus 303 -s~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 303 -GPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRE--NFLITRHLKDYLYLISK 371 (372)
T ss_pred -cCCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHh
Confidence 33321 1111225556777888888888888999999999999998887643 48999999999999875
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-09 Score=115.94 Aligned_cols=359 Identities=13% Similarity=0.148 Sum_probs=254.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--NACAHTHCGILYKDEGRLVEAAESYH 140 (921)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (921)
.|..--.+|++++-.-.+.+.+|......+..+|+...-...|.+++..-|- +..+|-..-......+-.+-++..|+
T Consensus 83 ~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyr 162 (835)
T KOG2047|consen 83 AYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYR 162 (835)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHH
Confidence 3556666777777766667789999999999999999999999999998773 44566666666777888899999999
Q ss_pred HHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------------CCC-------
Q 002443 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------------------------DPH------- 189 (921)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------~p~------- 189 (921)
+.++..|...+.+ -..+...+++++|.+.|...+.. +|+
T Consensus 163 RYLk~~P~~~eey----------ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 163 RYLKVAPEAREEY----------IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred HHHhcCHHHHHHH----------HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 9999999864431 22334456666666666554432 222
Q ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH-----H------------------
Q 002443 190 --------------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAY-----C------------------ 229 (921)
Q Consensus 190 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~-----~------------------ 229 (921)
-...|..||..|.+.|.+++|...|++++..--. ...++ +
T Consensus 233 daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 233 DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 1456889999999999999999999998753111 00000 0
Q ss_pred ---------H------------------------------HHHHHHHCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHH
Q 002443 230 ---------N------------------------------MGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIAL 269 (921)
Q Consensus 230 ---------~------------------------------la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~ 269 (921)
. +-.+-...|+..+-+..|.++++ .+|... ....+.++
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw 390 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLW 390 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHH
Confidence 0 01111122444555555555543 233321 22334556
Q ss_pred HhhhhhhhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------------
Q 002443 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------------- 332 (921)
Q Consensus 270 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------- 332 (921)
..++..|...|+++.|..+++++.+.+-.. ..+|..-|..-....+++.|..+++++......
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 677788888889999999999888765332 467888888888888899999988888765211
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Q 002443 333 -----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAY 405 (921)
Q Consensus 333 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~ 405 (921)
+..+|..++.+....|-++.-...|++.+.+.--.+....|.|..+.....+++|.+.|++.+.+. |...++|
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 245677788888888888888899999998888888888999999988889999999999988884 4444554
Q ss_pred HHH---HHHHHHcCCHHHHHHHHHHHhhcCC
Q 002443 406 NNL---GVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 406 ~~l---a~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
... ...-..--+.+.|...|++||+..|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 432 2222233478889999999999888
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-11 Score=120.58 Aligned_cols=124 Identities=18% Similarity=0.149 Sum_probs=116.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 002443 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 355 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 355 (921)
.++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++..++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002443 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (921)
Q Consensus 356 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 402 (921)
.++++++.+|++..+++.+|.++.+.|++++|+.+++++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999988654
|
|
| >cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.4e-12 Score=139.89 Aligned_cols=167 Identities=20% Similarity=0.119 Sum_probs=129.3
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhccc
Q 002443 660 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 739 (921)
Q Consensus 660 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 739 (921)
++|..--...|..+.+++++..+.++.|+.+|+++|.+ ...+.+.+.+++.|+. ++|.|.|.++ .++....|..
T Consensus 191 i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~l~~~~~~ 264 (367)
T cd05844 191 ILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDG----PLLAALEALARALGLG-GRVTFLGAQP-HAEVRELMRR 264 (367)
T ss_pred EEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCc----hHHHHHHHHHHHcCCC-CeEEECCCCC-HHHHHHHHHh
Confidence 33333335689999999999999999999999999865 4556788888888997 8999999986 5788899999
Q ss_pred ccEEecCCC-------CCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHH
Q 002443 740 MDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVT 810 (921)
Q Consensus 740 ~Dv~Ld~~~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~--~~~~~y~~~a~~l~~d~~ 810 (921)
+|+++-|.- .+.|++.+|||++|+|||+-....+.. ++.. |-..++. .|.+++++...++.+|++
T Consensus 265 ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e-----~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 265 ARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPE-----AVED-GETGLLVPEGDVAALAAALGRLLADPD 338 (367)
T ss_pred CCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchh-----heec-CCeeEEECCCCHHHHHHHHHHHHcCHH
Confidence 999998874 356899999999999999733221111 1111 2222333 588999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002443 811 ALANLRMSLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 840 (921)
.+.+++.+.++.+. ..|+++.++..+++
T Consensus 339 ~~~~~~~~a~~~~~--~~~s~~~~~~~l~~ 366 (367)
T cd05844 339 LRARMGAAGRRRVE--ERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHHHH--HHCCHHHHHHHHhc
Confidence 99999988888764 34899999988875
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-11 Score=135.04 Aligned_cols=336 Identities=15% Similarity=0.060 Sum_probs=199.7
Q ss_pred eeeccCCCcc-cchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEE-ccCCCHHHHHHHHHhCC
Q 002443 489 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRD-IYGIDEKKVAAMVREDK 566 (921)
Q Consensus 489 riGyvS~df~-~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~d~ 566 (921)
+|++|++... .--+..++..+.........++.++................ ...... ........+.+.++..+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 76 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQE----VVRVIVLDNPLDYRRAARAIRLSG 76 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCccc----ceeeeecCCchhHHHHHHHHhhcC
Confidence 4777776543 22244555566666666667777665433211110000000 001111 11223456778899999
Q ss_pred ccEEEecCCCC--CCCchhhhh----cCCCceEEeeccC-CCCCC----------CCCccEEEecC-CCCCCCcccCccc
Q 002443 567 IDILVELTGHT--ANNKLGMMA----CQPAPVQVTWIGY-PNTTG----------LPTIDYRITDS-LADPPETKQKHVE 628 (921)
Q Consensus 567 idiLvdl~g~t--~~~r~~~~a----~r~ApvQ~~~~G~-p~ttG----------~~~~Dy~i~d~-~~~p~~~~~~~~e 628 (921)
+||++-...+. .......+. .+..|+-+..-++ +.... +...|.+++.. ...-.-....+.+
T Consensus 77 ~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 156 (366)
T cd03822 77 PDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPE 156 (366)
T ss_pred CCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCC
Confidence 99998654222 111111111 2567776666565 21111 12346666542 0000000122357
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-H
Q 002443 629 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-H 705 (921)
Q Consensus 629 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~-~ 705 (921)
++..+|+..-...+. ............+.++++++++ ..|..+.+++++.++.+..|+.+|++.|.+....... .
T Consensus 157 ~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 234 (366)
T cd03822 157 KIAVIPHGVPDPPAE--PPESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRG 234 (366)
T ss_pred cEEEeCCCCcCcccC--CchhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhh
Confidence 888888653211111 0000011112334445666664 4788899999999999999999999998653221111 1
Q ss_pred HHHHHHHHcCCCCCCEEEccC-cCCcHHHHHhcccccEEecCCCCC---CcccHHHHhhcCCcEEecCCCcccccchhH-
Q 002443 706 RFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFPYA---GTTTTCESLYMGVPCVTMAGSVHAHNVGVS- 780 (921)
Q Consensus 706 ~~~~~~~~~gi~~~rv~~~~~-~~~~~~~~~~~~~~Dv~Ld~~~~~---g~~t~~eal~~GvPvvt~~g~~~~~r~~~~- 780 (921)
...+.+.+.|+. ++|.|.|. ++ .++....|..+|+++-|+.+. .+.+.+|||++|+|||+ +.+++.
T Consensus 235 ~~~~~i~~~~~~-~~v~~~~~~~~-~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~-------~~~~~~~ 305 (366)
T cd03822 235 EAYALAERLGLA-DRVIFINRYLP-DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVIS-------TPVGHAE 305 (366)
T ss_pred hhHhHHHhcCCC-CcEEEecCcCC-HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEe-------cCCCChh
Confidence 111346788987 89999987 65 678899999999999888654 46789999999999998 334321
Q ss_pred HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 781 LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 781 ~l~~~gl~~~i~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
.+.. +-..++. .|.+++++....+.+|++.+..++++.++... . |+++.+++.+.++|+
T Consensus 306 ~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 306 EVLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYAR--A-MSWERVAERYLRLLA 366 (366)
T ss_pred eeee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh--h-CCHHHHHHHHHHHhC
Confidence 1111 2234443 57899999999999999999999999888753 3 999999999998873
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-10 Score=108.30 Aligned_cols=185 Identities=17% Similarity=0.148 Sum_probs=147.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q 002443 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (921)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (921)
.++....+-....+....|+.+.|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 34445666677777888899999999999988888999999999999999999999999999999999988876555433
Q ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (921)
Q Consensus 267 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (921)
.++. .+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-+|++.+-+.|.++..+..+|.+++.
T Consensus 128 Ailk-------a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 128 AILK-------AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHH-------HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3333 355667888888888888888888888888888888888888888888888888888888888888877
Q ss_pred cC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002443 347 RD---NLDKAVECYQMALSIKPNFSQSLNNLGVVY 378 (921)
Q Consensus 347 ~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 378 (921)
+| ++.-|.++|.++++++|.+..+++.+-.+.
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 66 667788888888888887766666554443
|
|
| >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=137.16 Aligned_cols=175 Identities=18% Similarity=0.184 Sum_probs=133.2
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002443 654 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 654 ~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
+++++..++++++++ .|..+.++++|.++.++ ++.+|+++|.+. ....+.+.+.+.|++ ++|.|.|...
T Consensus 192 ~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~----~~~~~~~~~~~~~~~-~~v~~~g~~~--- 262 (371)
T cd04962 192 GAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGP----ERSPAERLARELGLQ-DDVLFLGKQD--- 262 (371)
T ss_pred CCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcCCc----CHHHHHHHHHHcCCC-ceEEEecCcc---
Confidence 445566667777754 79999999999998766 568999988662 345677778888997 8999999754
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcC
Q 002443 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 808 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~--~~~~~y~~~a~~l~~d 808 (921)
+....|..+|+++-|..+ +.|.+.+|||++|+|||+-....... ++. -|-..+++ .|.+++.+....+.+|
T Consensus 263 ~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e-----~i~-~~~~G~~~~~~~~~~l~~~i~~l~~~ 336 (371)
T cd04962 263 HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPE-----VVK-HGETGFLVDVGDVEAMAEYALSLLED 336 (371)
T ss_pred cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchh-----hhc-CCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 455667779999999866 77899999999999999833221111 111 13334444 3889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002443 809 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 809 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 845 (921)
++.+..++.+.++..... |+++.++..+++.|+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~--fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 337 DELWQEFSRAARNRAAER--FDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhC
Confidence 999999999998875433 99999999999999753
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=138.31 Aligned_cols=206 Identities=17% Similarity=0.164 Sum_probs=152.0
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC--cEEEEecCCCCC
Q 002443 627 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN--SRLVVKCKPFCC 700 (921)
Q Consensus 627 ~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~ 700 (921)
.+++..+|+..- .|.|.+ ........+++++.++|++++++ .|..+.+++++.++++..|+ .+|+++|++..+
T Consensus 186 ~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~ 264 (405)
T TIGR03449 186 PDRIDVVAPGADLERFRPGD-RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGS 264 (405)
T ss_pred hhhEEEECCCcCHHHcCCCc-HHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCC
Confidence 366777776421 122221 11111223445566667777766 78899999999999999887 888888864322
Q ss_pred H-HHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccch
Q 002443 701 D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 701 ~-~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
. ...+.+++..++.|+. ++|.|+|.++ .++....|..+|+++-|+-. +.|.+.+|||++|+|||+ ++++
T Consensus 265 g~~~~~~l~~~~~~~~l~-~~v~~~g~~~-~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~-------~~~~ 335 (405)
T TIGR03449 265 GLATPDALIELAAELGIA-DRVRFLPPRP-PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVA-------ARVG 335 (405)
T ss_pred cchHHHHHHHHHHHcCCC-ceEEECCCCC-HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEE-------ecCC
Confidence 2 4567788888999997 8999999876 67888899999999887754 778999999999999998 4443
Q ss_pred h--HHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002443 779 V--SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 779 ~--~~l~~~gl~~~i~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 846 (921)
+ .++. -|-..+++ .|.+++.+...++.+|++.+..+++..++.. ..|+++.++++++++|.++.
T Consensus 336 ~~~e~i~-~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~---~~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 336 GLPVAVA-DGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHA---AGFSWAATADGLLSSYRDAL 403 (405)
T ss_pred CcHhhhc-cCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHh
Confidence 1 1111 13334444 4899999999999999999999999888764 24999999999999998753
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-11 Score=133.31 Aligned_cols=225 Identities=19% Similarity=0.158 Sum_probs=190.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 002443 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (921)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 268 (921)
........++..+...|-...|+..+++ ...|.....+|...|+..+|.....+-++.+|+ + ..
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~-------~l 459 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P-------RL 459 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c-------hh
Confidence 3455667889999999999999999988 467778889999999999999999888884443 3 34
Q ss_pred HHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002443 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (921)
Q Consensus 269 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (921)
|..+|++.....-+++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 455555444444555555555443 34566777777788899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
+++.|.++|..++.++|++.++|++++..|...++..+|...++++++.+-++..+|.|...+..+.|.+++|++.|.+.
T Consensus 534 k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred hhcCCCC
Q 002443 429 LKIDPDS 435 (921)
Q Consensus 429 l~l~P~~ 435 (921)
+.+.-+.
T Consensus 614 l~~~~~~ 620 (777)
T KOG1128|consen 614 LDLRKKY 620 (777)
T ss_pred HHhhhhc
Confidence 8875443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-09 Score=105.15 Aligned_cols=163 Identities=22% Similarity=0.246 Sum_probs=76.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHH
Q 002443 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (921)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 167 (921)
...+....|+.+.|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+... +...--+.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~-------~KRKlAil 130 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI-------RKRKLAIL 130 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH-------HHHHHHHH
Confidence 33344444555555555555444445555555555555555555555555555555554444322 22222233
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHH
Q 002443 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESA 244 (921)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A 244 (921)
..+|+..+|++.+.+.++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++-+| +++-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444455555555555555555555555555555555555555555554445544444444444444433 23334
Q ss_pred HHHHHHHHHhCCC
Q 002443 245 IACYERCLAVSPN 257 (921)
Q Consensus 245 ~~~~~~al~~~p~ 257 (921)
.++|.++++++|.
T Consensus 211 rkyy~~alkl~~~ 223 (289)
T KOG3060|consen 211 RKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHhChH
Confidence 4444444444443
|
|
| >PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-11 Score=134.67 Aligned_cols=178 Identities=15% Similarity=0.150 Sum_probs=131.3
Q ss_pred CCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCCEEEccC
Q 002443 654 ALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPL 726 (921)
Q Consensus 654 ~~~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~ 726 (921)
+++.+..+++...+ ..|..+.++++|.++.+..|+.+|+++|.+... +...+.+.+.+.+.| ++|.|+|.
T Consensus 188 ~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G~ 264 (380)
T PRK15484 188 NISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRCIMLGG 264 (380)
T ss_pred CCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcEEEeCC
Confidence 34444455665555 488999999999999999999999999865321 223445555555554 57999999
Q ss_pred cCCcHHHHHhcccccEEecCCCC--CCcccHHHHhhcCCcEEecCCCcccccchh-HHHhhcCCccc-c--cCCHHHHHH
Q 002443 727 ILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHL-I--AKNEDEYVQ 800 (921)
Q Consensus 727 ~~~~~~~~~~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~-i--~~~~~~y~~ 800 (921)
++ ..+....|+.+||++-|+-+ +.|.+.+|||++|+|||+ ++.|+ .=+-.-|...+ + ..|.+++.+
T Consensus 265 ~~-~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~-------s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~ 336 (380)
T PRK15484 265 QP-PEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLA-------STKGGITEFVLEGITGYHLAEPMTSDSIIS 336 (380)
T ss_pred CC-HHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEE-------eCCCCcHhhcccCCceEEEeCCCCHHHHHH
Confidence 86 57888899999999988754 557899999999999998 44431 10111133343 3 358999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002443 801 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 801 ~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 845 (921)
...+|.+|++. .+++++.|+... ..|+++.+++++++.|...
T Consensus 337 ~I~~ll~d~~~-~~~~~~ar~~~~--~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 337 DINRTLADPEL-TQIAEQAKDFVF--SKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHcCHHH-HHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHh
Confidence 99999999974 678888877654 3499999999999999653
|
|
| >cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-11 Score=132.30 Aligned_cols=329 Identities=17% Similarity=0.112 Sum_probs=193.2
Q ss_pred eeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEEcc--C-----CCHHHHHHHH
Q 002443 490 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY--G-----IDEKKVAAMV 562 (921)
Q Consensus 490 iGyvS~df~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~a~~i 562 (921)
|.++.+.|..=-+...+..+.+.....++++.+++.....+ ....++.. .-....+. . ..-..+.+.+
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-~~~~~~~~----~i~v~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-LGEELEEA----GVPVYCLGKRPGRPDPGALLRLYKLI 76 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-hhHHHHhc----CCeEEEEecccccccHHHHHHHHHHH
Confidence 44444444332223344456666666677777776543221 11122210 00111111 1 0124577888
Q ss_pred HhCCccEEEecCCCCCCCchhhhhc-CCCceEEeeccCCCCCC--------------CCCccEEEecCCCCCCCcc--cC
Q 002443 563 REDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTG--------------LPTIDYRITDSLADPPETK--QK 625 (921)
Q Consensus 563 ~~d~idiLvdl~g~t~~~r~~~~a~-r~ApvQ~~~~G~p~ttG--------------~~~~Dy~i~d~~~~p~~~~--~~ 625 (921)
+..++||++-...++.......... +-.|+-.+..+....++ ....|.+++-....-.... ..
T Consensus 77 ~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 156 (365)
T cd03807 77 RRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGY 156 (365)
T ss_pred HhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCC
Confidence 8999999987554433221111112 34566555555443321 1223443321100000001 12
Q ss_pred cccceEEcCCCccc--cCCCCCCC-CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 002443 626 HVEELIRLPECFLC--YTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 700 (921)
Q Consensus 626 ~~e~~~~lp~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 700 (921)
-.+++..+|+..-. +.+..... ..+...+++++.++|+.+.+. .|..+.+++++.++....|+.+|++.|.+..
T Consensus 157 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~- 235 (365)
T cd03807 157 PPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPD- 235 (365)
T ss_pred ChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcc-
Confidence 23566666653211 11111000 011223455666677777754 7889999999999999999999999986532
Q ss_pred HHHHHHHHHHHH-HcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccch
Q 002443 701 DSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 701 ~~~~~~~~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
...+..... ..|+. ++|.|.|.. .+....|..+|+++-|..+ +.|++.+|||++|+|||+ ++.+
T Consensus 236 ---~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~-------~~~~ 301 (365)
T cd03807 236 ---RANLELLALKELGLE-DKVILLGER---SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVA-------TDVG 301 (365)
T ss_pred ---hhHHHHHHHHhcCCC-ceEEEcccc---ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEE-------cCCC
Confidence 223333333 77886 899999864 4567778889999998877 778999999999999998 3333
Q ss_pred h--HHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 779 V--SLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 779 ~--~~l~~~gl~~~i--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
+ .++.. ..++ ..|.+++.+....+.+|++.+..++...++... ..|++...++.++++|+
T Consensus 302 ~~~e~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 302 DNAELVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIE--ENFSIEAMVEAYEELYR 365 (365)
T ss_pred ChHHHhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 1 11222 2223 358999999999999999999999988888764 34899999999999884
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=115.60 Aligned_cols=176 Identities=23% Similarity=0.224 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002443 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (921)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 323 (921)
+...+-+....+|++... .+++..+.. .|+-+.+..+..++...++.+...+..+|......|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 444444444555555443 333333333 345566666666666666667677767788888888888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002443 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (921)
Q Consensus 324 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 403 (921)
+++....|++.++|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++.|..++..+....+.+..
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888777888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 404 AYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
+..+++.+...+|++++|...-.+
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccc
Confidence 888888888888888888776554
|
|
| >cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=141.29 Aligned_cols=173 Identities=15% Similarity=0.126 Sum_probs=137.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002443 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
.+.++++.+.+. .|..+.+++++..+.+..|+.+|+++|.+..++...+.+++.+++.|+. ++|.|+|. .+..
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~-~~V~f~G~----~~v~ 365 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLE-DNVKFTGF----QNVK 365 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCC-CeEEEcCC----ccHH
Confidence 344567777765 7888999999999999999999999987644556778888889999997 89999993 3556
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh--HHHhh-----cCCcccc--cCCHHHHHHHHHH
Q 002443 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK-----VGLKHLI--AKNEDEYVQLALQ 804 (921)
Q Consensus 735 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~-----~gl~~~i--~~~~~~y~~~a~~ 804 (921)
..|..+||++-|+-. +.+++.+|||++|+|||+ +.+|+ .++.. .|-..++ ..|.+++.+...+
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVa-------td~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ 438 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVA-------TDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILR 438 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEE-------CCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHH
Confidence 667779999988755 779999999999999998 44432 12222 1333444 3589999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 805 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 805 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
|.+|++.+..+++..++++. ..|+++.++.++++.|+
T Consensus 439 ll~~~~~~~~~~~~a~~~v~--~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 439 LLKDPELRRAMGEAGRKRVE--RYYTLERMIDSYRRLYL 475 (475)
T ss_pred HhcCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 99999999999999998875 44899999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=114.26 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=104.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002443 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
..+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778888888888888888999999999999999999998888988899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002443 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 899999999999999999999999999999998876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-11 Score=130.81 Aligned_cols=315 Identities=15% Similarity=0.090 Sum_probs=186.7
Q ss_pred eeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHH-HhhhCCe--eEEccCCCHHHHHHHHHhC
Q 002443 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK-VMKKGGI--WRDIYGIDEKKVAAMVRED 565 (921)
Q Consensus 489 riGyvS~df~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~a~~i~~d 565 (921)
||.++++.+...-+...+..+.+.+....++|+++................ ....... ...........+.+.|+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 466777777544444555666677767788888887654332211100000 0000000 0000111235688899999
Q ss_pred CccEEEecCCCCCCCchhhhhcC-CCceEEeeccCCCCCCC-------------CCccEEEecCCCCCCCcccCc---cc
Q 002443 566 KIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTTGL-------------PTIDYRITDSLADPPETKQKH---VE 628 (921)
Q Consensus 566 ~idiLvdl~g~t~~~r~~~~a~r-~ApvQ~~~~G~p~ttG~-------------~~~Dy~i~d~~~~p~~~~~~~---~e 628 (921)
++||++-... ....-+..+..+ -.|+-+..-+....... ...|.+++-.-..-......| .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999997665 222223333322 14554444443322221 445666653222222222333 36
Q ss_pred ceEEcCCCccccCCCCCCCCCCC--CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 002443 629 ELIRLPECFLCYTPSPEAGPVCP--TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 704 (921)
Q Consensus 629 ~~~~lp~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~ 704 (921)
++..+|+..- ... ..+.... .....++.++|+++++. .|..+.++++|..+....|+.+|++.|.+ ...
T Consensus 160 ~~~vi~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~----~~~ 232 (353)
T cd03811 160 KIEVIYNPID-IEE--IRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDG----PLR 232 (353)
T ss_pred ccEEecCCcC-hhh--cCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCC----ccH
Confidence 7777776421 111 1110100 12345566777777765 68999999999999988899999999865 344
Q ss_pred HHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh--HH
Q 002443 705 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SL 781 (921)
Q Consensus 705 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~ 781 (921)
..+.+...+.|+. ++|.|.|.+. +....+..+|+++-|..+ +.|++.+|||++|+|||+ +++++ .+
T Consensus 233 ~~~~~~~~~~~~~-~~v~~~g~~~---~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~-------~~~~~~~e~ 301 (353)
T cd03811 233 EELEALAKELGLA-DRVHFLGFQS---NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVA-------TDCPGPREI 301 (353)
T ss_pred HHHHHHHHhcCCC-ccEEEecccC---CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEE-------cCCCChHHH
Confidence 5666777888986 8999999854 455677889999999877 668999999999999998 44431 11
Q ss_pred HhhcCCccccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHHHh
Q 002443 782 LTKVGLKHLIA--KNEDEY---VQLALQLASDVTALANLRMSLRDLM 823 (921)
Q Consensus 782 l~~~gl~~~i~--~~~~~y---~~~a~~l~~d~~~~~~~r~~~~~~~ 823 (921)
+.. |-..++. .+.+++ ++....+..|++.+.+++...++..
T Consensus 302 i~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 302 LED-GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred hcC-CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 111 3333443 456666 6777888888888888777555443
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. |
| >cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=138.53 Aligned_cols=169 Identities=17% Similarity=0.106 Sum_probs=125.4
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCC-----cEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCCEEEccCc
Q 002443 657 NGFITFGSFNN--LAKITPKVLQVWARILCAVPN-----SRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLI 727 (921)
Q Consensus 657 ~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~ 727 (921)
++..+|.++++ ..|.....+++|..+.+..|+ .+|+|+|++.. +....+.|++..+++|+. ++|.|+|.+
T Consensus 235 ~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~-~~V~f~g~v 313 (419)
T cd03806 235 TRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLE-DKVEFVVNA 313 (419)
T ss_pred cCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCC-CeEEEecCC
Confidence 34456666664 589999999999999988765 89999986532 224567788888899997 899999987
Q ss_pred CCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHH---Hh--hcCCcccccCCHHHHHHH
Q 002443 728 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL---LT--KVGLKHLIAKNEDEYVQL 801 (921)
Q Consensus 728 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~---l~--~~gl~~~i~~~~~~y~~~ 801 (921)
+ .++....|+.+|++|-|... +.|.+.+|||++|+|||+. +.|+.. .. .-|-..+++.|.+++.+.
T Consensus 314 ~-~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~-------~~ggp~~~iv~~~~~g~~G~l~~d~~~la~a 385 (419)
T cd03806 314 P-FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAH-------ASGGPLLDIVVPWDGGPTGFLASTAEEYAEA 385 (419)
T ss_pred C-HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEE-------cCCCCchheeeccCCCCceEEeCCHHHHHHH
Confidence 6 68899999999999988754 7899999999999999973 332211 11 024556677899999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 002443 802 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFAL 836 (921)
Q Consensus 802 a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 836 (921)
..++.+|++.....+.+.+.... ..|+.+.|.+
T Consensus 386 i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~f~~ 418 (419)
T cd03806 386 IEKILSLSEEERLRIRRAARSSV--KRFSDEEFER 418 (419)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH--HhhCHHHhcc
Confidence 99999976544443333333332 3478877753
|
ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-10 Score=113.80 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002443 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (921)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (921)
..+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 33666666667889999999 99999999999999999999999999999999998999999999999999999999999
Q ss_pred cCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002443 145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224 (921)
Q Consensus 145 ~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 224 (921)
..|++... +..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..|.-.|+++.|..++..+....+.+
T Consensus 129 l~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 129 LAPTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred cCCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 99999776 77888888899999999999999999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002443 225 AEAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
..+..+++.+....|++.+|.....+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999887654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=123.26 Aligned_cols=115 Identities=29% Similarity=0.462 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (921)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 413 (921)
++-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.|.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44566678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhh
Q 002443 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (921)
Q Consensus 414 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~ 448 (921)
.+|++++|++.|+++|+++|++.....++-.+-.-
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999888776554433
|
|
| >cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-11 Score=136.46 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=136.3
Q ss_pred CcccceEEcCCCccc--cCCCCCCCC-CCCCCCCCCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 002443 625 KHVEELIRLPECFLC--YTPSPEAGP-VCPTPALTNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPF 698 (921)
Q Consensus 625 ~~~e~~~~lp~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~ 698 (921)
.|.+++..+|+..-. |.|.+.... ......+..+..+++...+ ..|..+.+++++.++.+..|+.+|+++|++.
T Consensus 174 ~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~ 253 (396)
T cd03818 174 ELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDG 253 (396)
T ss_pred hhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 445788888864311 222211110 1111123344444444443 4899999999999999999999999998531
Q ss_pred C--------CHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC-CCCCcccHHHHhhcCCcEEecC
Q 002443 699 C--------CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGTTTTCESLYMGVPCVTMA 769 (921)
Q Consensus 699 ~--------~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~-~~~g~~t~~eal~~GvPvvt~~ 769 (921)
. .+..++.+.+.+... .+.++|.|+|.++ .++....|+.+|+++-|. |++.+.+.+|||+||+|||+
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIa-- 329 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGR-LDLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVG-- 329 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhcc-cCcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEE--
Confidence 0 111333443333221 1348999999987 678889999999998766 66778899999999999998
Q ss_pred CCcccccchh--HHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002443 770 GSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 770 g~~~~~r~~~--~~l~~~gl~~~i~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 838 (921)
+++++ .++. -|...+++ .|.+++.+...++.+|++.+.+++++.|+.... .|+++.++..+
T Consensus 330 -----s~~~g~~e~i~-~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~--~fs~~~~~~~~ 394 (396)
T cd03818 330 -----SDTAPVREVIT-DGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR--YDLLSVCLPRQ 394 (396)
T ss_pred -----cCCCCchhhcc-cCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hccHHHHHHHH
Confidence 44441 1111 13444543 589999999999999999999999999988754 48887766654
|
ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II). |
| >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-10 Score=130.10 Aligned_cols=174 Identities=17% Similarity=0.133 Sum_probs=133.9
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002443 654 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 654 ~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
..+++.++|+++++. .|..+.+++++.++.+..|+.+|+++|.+. ......+.....+.|+. ++|.|.|.++ .+
T Consensus 198 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~ 273 (375)
T cd03821 198 PILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDE--GGYRAELKQIAAALGLE-DRVTFTGMLY-GE 273 (375)
T ss_pred cCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCC--cchHHHHHHHHHhcCcc-ceEEEcCCCC-hH
Confidence 345566667777754 889999999999999999999999998642 22334444445788987 8999999987 57
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHH
Q 002443 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 810 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~ 810 (921)
+....|..+|+++-|.-+ +.|++.+|||++|+|||+-....+.. ++.. +..-++..+.+++++...++.+|++
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCHH
Confidence 888899999999988865 77999999999999999844332211 2222 3334556677999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002443 811 ALANLRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 839 (921)
.+..+++..++.+.. .|+++.+++.++
T Consensus 348 ~~~~~~~~~~~~~~~--~~s~~~~~~~~~ 374 (375)
T cd03821 348 RLKAMGENGRALVEE--RFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHHHH--hcCHHHHHHHhh
Confidence 999999998887643 489998888765
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-10 Score=133.88 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 002443 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (921)
Q Consensus 100 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~ 179 (921)
+++.-+.......|.++.++..||.+..+.|++++|...++.+++..|++..+ ...++.++.+.+++++|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a-------~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA-------FILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-------HHHHHHHHHHhccHHHHHHH
Confidence 34444444455678889999999999999999999999999999999998766 56667777778999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH
Q 002443 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (921)
Q Consensus 180 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (921)
+++++..+|+++.+++.+|.++.++|++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++....-.
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999998866544
|
|
| >cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=130.60 Aligned_cols=313 Identities=15% Similarity=0.133 Sum_probs=181.2
Q ss_pred eeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEEccCC--C----HHHHHHHH
Q 002443 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMV 562 (921)
Q Consensus 489 riGyvS~df~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~a~~i 562 (921)
||-++.+++..=-+..++..+.+.+...+++|++++...........+.. ....+..+... . ...+.+.+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEK----LGGKIYYIPARKKNPLKYFKKLYKLI 76 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHH----cCCeEEEecCCCccHHHHHHHHHHHH
Confidence 35566666622223345555666666778999888765433222222221 11222222111 1 13466677
Q ss_pred HhCCccEEEecCCCCCCCchhhhh-cCCCceEEeec-cCCCCCCCCCcc----------EEEecCCCCCCCc--cc----
Q 002443 563 REDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWI-GYPNTTGLPTID----------YRITDSLADPPET--KQ---- 624 (921)
Q Consensus 563 ~~d~idiLvdl~g~t~~~r~~~~a-~r~ApvQ~~~~-G~p~ttG~~~~D----------y~i~d~~~~p~~~--~~---- 624 (921)
+..++||++-...++.. -..+++ ....|+-+.+. +...+......- +..+|.++.+... +.
T Consensus 77 ~~~~~Dvv~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 155 (358)
T cd03812 77 KKNKYDIVHVHGSSASG-FILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGK 155 (358)
T ss_pred hcCCCCEEEEeCcchhH-HHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhC
Confidence 88999999865444211 112222 23445544332 221111110000 1112332222221 11
Q ss_pred CcccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 002443 625 KHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 700 (921)
Q Consensus 625 ~~~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 700 (921)
...+++.-+|+..-. +.+.+............++.++++.++++ .|..+.+++++..+.+..|+.+++++|.+
T Consensus 156 ~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g--- 232 (358)
T cd03812 156 VKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG--- 232 (358)
T ss_pred CCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC---
Confidence 123556666653110 11111111111112345566677777755 88999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh
Q 002443 701 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV 779 (921)
Q Consensus 701 ~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 779 (921)
+....+++.+++.|+. ++|.|.|.. ++....|..||+++-|+-+ +.|.+.+|||++|+|||+ +++++
T Consensus 233 -~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~-------s~~~~ 300 (358)
T cd03812 233 -ELEEEIKKKVKELGLE-DKVIFLGVR---NDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCIL-------SDTIT 300 (358)
T ss_pred -chHHHHHHHHHhcCCC-CcEEEeccc---CCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEE-------EcCCc
Confidence 3456777778888997 899999973 4566677889999988865 779999999999999998 33331
Q ss_pred H--HHhhcCCcccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002443 780 S--LLTKVGLKHLIAK-NEDEYVQLALQLASDVTALANLRMSLRDL 822 (921)
Q Consensus 780 ~--~l~~~gl~~~i~~-~~~~y~~~a~~l~~d~~~~~~~r~~~~~~ 822 (921)
. ++.. +..-++.. +++++.+...+|.+|++.++.++...+..
T Consensus 301 ~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~ 345 (358)
T cd03812 301 KEVDLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKG 345 (358)
T ss_pred hhhhhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhcc
Confidence 1 2222 33334443 56999999999999998877776655544
|
capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1). |
| >cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=127.93 Aligned_cols=327 Identities=17% Similarity=0.123 Sum_probs=194.4
Q ss_pred eeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhh-HHHHHHHhhhCCeeEEccCC-CHHHHHHHHHhCC
Q 002443 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT-IRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDK 566 (921)
Q Consensus 489 riGyvS~df~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~ 566 (921)
+|.+++..|-.- ...++......+...+++|.+++.....+... ...........-..+.+..+ ....+.+.++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 366777766322 33445556666667778888887654322110 00000000000000000011 1234666777889
Q ss_pred ccEEEecCCCCCCCchhhhhcCC--CceEEeeccCCCCCC---------CCCccEEEecCCCCCCCccc---CcccceEE
Q 002443 567 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG---------LPTIDYRITDSLADPPETKQ---KHVEELIR 632 (921)
Q Consensus 567 idiLvdl~g~t~~~r~~~~a~r~--ApvQ~~~~G~p~ttG---------~~~~Dy~i~d~~~~p~~~~~---~~~e~~~~ 632 (921)
+||+.--.++.. .....+..+. -|+-++..|+..... +...|++++..-..-..... ...+++..
T Consensus 80 ~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v 158 (355)
T cd03799 80 IDHIHAHFGTTP-ATVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV 158 (355)
T ss_pred CCEEEECCCCch-HHHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence 999875443322 2233333333 455555555432211 33467776532211111122 23566677
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHH
Q 002443 633 LPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 710 (921)
Q Consensus 633 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~ 710 (921)
+|+.. .... ..+. . ....++.++++.+.+ ..|..+.+++++.++....|+.+|.+.|.+ .....+.+.
T Consensus 159 i~~~~-d~~~--~~~~--~-~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~~~~~~~ 228 (355)
T cd03799 159 VHCGV-DLER--FPPR--P-PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG----PLRDELEAL 228 (355)
T ss_pred EeCCc-CHHH--cCCc--c-ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC----ccHHHHHHH
Confidence 77532 1110 0000 0 112233344445443 588999999999998888899999999865 345567777
Q ss_pred HHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-------CCcccHHHHhhcCCcEEecCCCcccccchhHHHh
Q 002443 711 LEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-------AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 783 (921)
Q Consensus 711 ~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-------~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 783 (921)
+++.++. ++|.|.|.++ .++....|..+||+|-|+.+ +.|++.+|||++|+|||+........ ++.
T Consensus 229 ~~~~~~~-~~v~~~g~~~-~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~-----~i~ 301 (355)
T cd03799 229 IAELGLE-DRVTLLGAKS-QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE-----LVE 301 (355)
T ss_pred HHHcCCC-CeEEECCcCC-hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcch-----hhh
Confidence 7888886 8899999987 68899999999999998864 66889999999999999843322211 222
Q ss_pred hcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 002443 784 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 837 (921)
Q Consensus 784 ~~gl~~~i~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 837 (921)
. |-..++. .|.+++++....+.+|++.+..+++..++.+... |+++..++.
T Consensus 302 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~ 354 (355)
T cd03799 302 D-GETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEE--FDIRKQAAR 354 (355)
T ss_pred C-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--cCHHHHhhc
Confidence 2 3233433 3899999999999999999999999988876543 777776654
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=128.93 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=191.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002443 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
-..++..+...|-..+|+..|++ ...|-....||...|+..+|..+..+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 44577888888999999999987 45778889999999999999999999998 6677888888888887776
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002443 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (921)
-|++|.++.+..- +.+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 6777766665432 223344555555678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002443 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (921)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 398 (921)
.++|..++..+|++.++|++++..|.+.++..+|...+++|++-+-++...|.|.-.+..+.|.+++|++.|.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998899999999999999999999999999998873
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=120.65 Aligned_cols=120 Identities=34% Similarity=0.521 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (921)
Q Consensus 153 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 232 (921)
...++.-+..-|.-+.+.++|.+|+..|.++|+++|.++..|.+.+.+|.++|+++.|++.++.++.++|.+..+|..||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 34577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhh
Q 002443 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (921)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 272 (921)
.+|..+|++++|++.|+++|+++|++...+.++..+-..+
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986666655544443
|
|
| >cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-11 Score=131.31 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=127.7
Q ss_pred CCCCCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002443 654 ALTNGFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 654 ~~~~~~~~~~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
+++++.++|..++ ...|..+.+++++.++....|+.+|+++|.+ ...+.+.+.+++.|+. ++|.|.|.+ .
T Consensus 183 ~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~---~ 254 (360)
T cd04951 183 GVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG----PLRATLERLIKALGLS-NRVKLLGLR---D 254 (360)
T ss_pred CcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC----CcHHHHHHHHHhcCCC-CcEEEeccc---c
Confidence 3445555566555 4589999999999999999999999999865 3456777888888987 899999975 3
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHh-cCH
Q 002443 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA-SDV 809 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~-~d~ 809 (921)
+....|..+|+++-|.-+ +.|.+.+|||++|+|||+-....+.. ++...|. -+...|.+++.+....+. .++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e-----~i~~~g~-~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVRE-----VVGDSGL-IVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhh-----EecCCce-EeCCCCHHHHHHHHHHHHhCCH
Confidence 556677789999988876 66889999999999999833221111 1111111 122478999999999998 566
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 810 TALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 810 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
..+..++.. ++... ..|+++.++..+++.|+
T Consensus 329 ~~~~~~~~~-~~~~~--~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 329 EERDIIGAR-RERIV--KKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHH-HHHHH--HhcCHHHHHHHHHHHhh
Confidence 666666665 65553 44999999999999986
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have |
| >cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=131.20 Aligned_cols=324 Identities=17% Similarity=0.110 Sum_probs=193.3
Q ss_pred chhhhhhhcccccccCCceEEEEEecccCCChhhHHHHH------------HHhhhCCeeEEccCCCHHHHHHHHH--hC
Q 002443 500 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE------------KVMKKGGIWRDIYGIDEKKVAAMVR--ED 565 (921)
Q Consensus 500 H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~i~--~d 565 (921)
.....++..++..+....++|++++.............. .... ...+..........+...|. ..
T Consensus 14 ~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 92 (377)
T cd03798 14 GGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVP-LLKGPLLYLLAARALLKLLKLKRF 92 (377)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhh-ccccchhHHHHHHHHHHHHhcccC
Confidence 334455666677776778888888765432221110000 0000 00000000111245778888 99
Q ss_pred CccEEEecCCCCCCCchhhhhcCC--CceEEeeccCCCCCC-------------CCCccEEEecCCCCCCCcccC--ccc
Q 002443 566 KIDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQK--HVE 628 (921)
Q Consensus 566 ~idiLvdl~g~t~~~r~~~~a~r~--ApvQ~~~~G~p~ttG-------------~~~~Dy~i~d~~~~p~~~~~~--~~e 628 (921)
++||++-......+-.. ....|. .|+-+...|...... +...|++++..-......... ...
T Consensus 93 ~~dii~~~~~~~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~ 171 (377)
T cd03798 93 RPDLIHAHFAYPDGFAA-ALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPE 171 (377)
T ss_pred CCCEEEEeccchHHHHH-HHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCC
Confidence 99998865433332222 222222 466555544332211 233577765422211111222 456
Q ss_pred ceEEcCCCccccCCCCCCCCCC---CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 002443 629 ELIRLPECFLCYTPSPEAGPVC---PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 703 (921)
Q Consensus 629 ~~~~lp~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~ 703 (921)
++..+|+.. ++....+... ......++.++++++++. .|....+++++..+....|+.+|.+.|.+ ..
T Consensus 172 ~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~----~~ 244 (377)
T cd03798 172 KVTVIPNGV---DTERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG----PL 244 (377)
T ss_pred ceEEcCCCc---CcccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC----cc
Confidence 677777542 1111100000 011334456677777754 78889999999999988899999998865 23
Q ss_pred HHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHH
Q 002443 704 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 782 (921)
Q Consensus 704 ~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l 782 (921)
...+.+.++..++. ++|.+.|.++ ..+....+..||+++-|..+ +.+++.+|||++|+|||+-....+.. ++
T Consensus 245 ~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~-----~~ 317 (377)
T cd03798 245 REALEALAAELGLE-DRVTFLGAVP-HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPE-----II 317 (377)
T ss_pred hHHHHHHHHhcCCc-ceEEEeCCCC-HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHH-----Hh
Confidence 45666667778886 7999999987 57888999999999998866 77899999999999999833221111 11
Q ss_pred hhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 783 TKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 783 ~~~gl~~~i--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
.. +-..++ ..|.+++++....+.+|+.. .+....+.... ..|++..++..+.++|++
T Consensus 318 ~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 318 TD-GENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVA--ERFSWENVAERLLELYRE 376 (377)
T ss_pred cC-CcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHH--HHhhHHHHHHHHHHHHhh
Confidence 11 222233 45899999999999999876 34444444433 337899999999988865
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
| >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-11 Score=132.25 Aligned_cols=172 Identities=17% Similarity=0.197 Sum_probs=131.1
Q ss_pred CCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002443 655 LTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 655 ~~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
..++.++++++++ ..|..+.++++|.++....|+.+|++.|.+ .....+.+...+.++. ++|.|.|.++ ..+
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~ 271 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG----PEREELEELARELGLA-DRVIFTGFVP-REE 271 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC----chHHHHHHHHHHcCCC-CcEEEeccCC-hHH
Confidence 3445556666664 468889999999999998899999999865 3556777777888887 8999999987 678
Q ss_pred HHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCH-HHHHHHHHHHhcCHH
Q 002443 733 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNE-DEYVQLALQLASDVT 810 (921)
Q Consensus 733 ~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~-~~y~~~a~~l~~d~~ 810 (921)
....|+.+|+++-|... ++|++.+|||++|+|||+.....+.. ++ .-|-.+++..+. +++++....+.+|++
T Consensus 272 ~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~-----~i-~~~~~g~~~~~~~~~~~~~i~~l~~~~~ 345 (374)
T cd03817 272 LPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPD-----LV-ADGENGFLFPPGDEALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhh-----he-ecCceeEEeCCCCHHHHHHHHHHHhChH
Confidence 89999999999999866 77889999999999999844332221 11 122334444433 399999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 811 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
.++.+++..++..... . +.+.+++.|++
T Consensus 346 ~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~ 373 (374)
T cd03817 346 LRRRLSKNAEESAEKF---S---FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHHHHHHHH---H---HHHHHHHHHhc
Confidence 9999998888875432 1 67888887764
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=109.53 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002443 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (921)
+.+++++..+|++....+.+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002443 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (921)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 405 (921)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=107.08 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=83.5
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002443 328 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (921)
Q Consensus 328 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 406 (921)
.+. ++..+..+.+|..+...|++++|.+.|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 334 5566777777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002443 407 NLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
++|.++...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888888887765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=122.48 Aligned_cols=187 Identities=13% Similarity=0.047 Sum_probs=112.9
Q ss_pred ChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002443 172 NTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (921)
Q Consensus 172 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (921)
+.+.++..+++.+... +.+.......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444433222 123445556677777788888888887654 557777788888899999999999888
Q ss_pred HHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002443 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (921)
Q Consensus 250 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (921)
.+.+.+.+... .+++.++..+. ...+.+.+|..+|++..+..+.++..+..++.++..+|++++|...++++++.
T Consensus 156 ~~~~~~eD~~l--~qLa~awv~l~---~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 156 NMQQIDEDSIL--TQLAEAWVNLA---TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHCCSCCHHH--HHHHHHHHHHH---HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHhcCCcHHH--HHHHHHHHHHH---hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88877766543 33343333322 11235666666666666555566666666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCH
Q 002443 330 NPHCAEACNNLGVIYKDRDNL-DKAVECYQMALSIKPNFS 368 (921)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~ 368 (921)
+|+++.++.+++.+....|+. +.+.+++.+....+|+++
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 666666666666666666665 445555555555566554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10307 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=129.53 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=146.6
Q ss_pred ccceEEcCCCccc--cCCCCCCC--CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 002443 627 VEELIRLPECFLC--YTPSPEAG--PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 700 (921)
Q Consensus 627 ~e~~~~lp~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 700 (921)
.+++..+|+..-. |.|..... ..+...+++++.++++...++ .|....+++++.++ ...|+.+|+++|.+
T Consensus 193 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g--- 268 (412)
T PRK10307 193 AEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQG--- 268 (412)
T ss_pred cccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCC---
Confidence 3567788864211 22221100 011223456666677777765 78889999998776 55689999999876
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCC-----cccHHHHhhcCCcEEecCCCcccc
Q 002443 701 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-----TTTTCESLYMGVPCVTMAGSVHAH 775 (921)
Q Consensus 701 ~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-----~~t~~eal~~GvPvvt~~g~~~~~ 775 (921)
..++.+++.++++|++ +|.|+|.++ .++....|+.+||++-|+-..+ ++...|+|+||+|||+ +
T Consensus 269 -~~~~~l~~~~~~~~l~--~v~f~G~~~-~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~-------s 337 (412)
T PRK10307 269 -GGKARLEKMAQCRGLP--NVHFLPLQP-YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVA-------T 337 (412)
T ss_pred -hhHHHHHHHHHHcCCC--ceEEeCCCC-HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEE-------E
Confidence 4567788888889985 699999886 6788888999999998876543 3347899999999998 3
Q ss_pred cchh----HHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002443 776 NVGV----SLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 776 r~~~----~~l~~~gl~~~i--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 846 (921)
+.++ .+.. + ..++ ..|.+++.+...+|.+|++.+..+++..++...+ .|+++..++++++.|+.+.
T Consensus 338 ~~~g~~~~~~i~--~-~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 338 AEPGTELGQLVE--G-IGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAER--TLDKENVLRQFIADIRGLV 409 (412)
T ss_pred eCCCchHHHHHh--C-CcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHh
Confidence 3321 1232 3 3343 3689999999999999999999999999987643 4999999999999998764
|
|
| >PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=128.35 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=118.3
Q ss_pred CeEEEecCCC----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCc-HHH
Q 002443 659 FITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN-HDH 733 (921)
Q Consensus 659 ~~~~~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~-~~~ 733 (921)
.++|+++.++ .|....+++.+..+. ++.+|+++|.+ +.++.+.+..++.|+. ++|.|.|.+... ++.
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g----~~~~~l~~~~~~~~l~-~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDG----SDFEKCKAYSRELGIE-QRIIWHGWQSQPWEVV 251 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCC----ccHHHHHHHHHHcCCC-CeEEEecccCCcHHHH
Confidence 4556666664 376777888777653 47899999866 3466788888889997 899999987544 344
Q ss_pred HHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCccccc-chh--HHHhhcCCcccc--cCCHHHHHHHHHHHhc
Q 002443 734 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHN-VGV--SLLTKVGLKHLI--AKNEDEYVQLALQLAS 807 (921)
Q Consensus 734 ~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r-~~~--~~l~~~gl~~~i--~~~~~~y~~~a~~l~~ 807 (921)
...|..+|+++-|..+ +.|.+++|||++|+|||+ ++ +++ .++. -|...++ ..|.+++++....|.+
T Consensus 252 ~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~-------s~~~~g~~eiv~-~~~~G~lv~~~d~~~la~~i~~l~~ 323 (359)
T PRK09922 252 QQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCIS-------SDCMSGPRDIIK-PGLNGELYTPGNIDEFVGKLNKVIS 323 (359)
T ss_pred HHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEE-------eCCCCChHHHcc-CCCceEEECCCCHHHHHHHHHHHHh
Confidence 5567889999988877 669999999999999998 43 221 1121 2444444 4689999999999999
Q ss_pred CHHHH--HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002443 808 DVTAL--ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 808 d~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 846 (921)
|++.+ .+.+..++ .|..+.|+.++-++|..+-
T Consensus 324 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 324 GEVKYQHDAIPNSIE-------RFYEVLYFKNLNNALFSKL 357 (359)
T ss_pred CcccCCHHHHHHHHH-------HhhHHHHHHHHHHHHHHHh
Confidence 99743 33333222 2456788888888887764
|
|
| >TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=127.71 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=134.6
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEcc-CcCCc
Q 002443 654 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP-LILLN 730 (921)
Q Consensus 654 ~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~-~~~~~ 730 (921)
+++++.++|+.+.++ .|..+.+++++.++. ++.+|++++++...+...+.+++.+...+...++|+|.+ .++ .
T Consensus 196 ~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 271 (388)
T TIGR02149 196 GIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLP-K 271 (388)
T ss_pred CCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCC-H
Confidence 455666667777765 688899999988764 467888876654455566778888888888667788764 454 6
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh--HHHhhcCCccccc--CCH------HHHH
Q 002443 731 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNE------DEYV 799 (921)
Q Consensus 731 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~i~--~~~------~~y~ 799 (921)
.+....|..+||+|-|+.+ +.|.+.+|||++|+|||+ +++++ .++. -|...++. .|. +++.
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~-------s~~~~~~e~i~-~~~~G~~~~~~~~~~~~~~~~l~ 343 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVA-------SATGGIPEVVV-DGETGFLVPPDNSDADGFQAELA 343 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEE-------eCCCCHHHHhh-CCCceEEcCCCCCcccchHHHHH
Confidence 7888899999999998876 778999999999999998 44441 1111 12233333 344 7899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002443 800 QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 800 ~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 845 (921)
+....+.+|++.++.+++..++...+. |+++.++.++.+.|+.+
T Consensus 344 ~~i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 344 KAINILLADPELAKKMGIAGRKRAEEE--FSWGSIAKKTVEMYRKV 387 (388)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhh
Confidence 999999999999999999988876433 99999999999999875
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=121.95 Aligned_cols=257 Identities=18% Similarity=0.106 Sum_probs=190.2
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 002443 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (921)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (921)
.++..|+|..++..++ ....++. .......+.+++..+|+++..+.-.... .+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHH
Confidence 3456799999997776 2233332 3556778899999999998776655432 233345666777766665677777
Q ss_pred HHHHHHHHHhCCC--hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002443 245 IACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (921)
Q Consensus 245 ~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 322 (921)
+..++..+..... +. .+....+.++...|++++|++.+.+. .+.+.......++..+++++.|.+.
T Consensus 86 l~~l~~~~~~~~~~~~~-------~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 86 LEELKELLADQAGESNE-------IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp HHHHHHCCCTS---CHH-------HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhccccccH-------HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 7766655433222 21 12233455666789999999988764 5678888889999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002443 323 YELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 323 ~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
++.+.+.+.+..-.....+++....| ++.+|...|++..+..+..+..++.++.++..+|++++|.+.++++++.+|+
T Consensus 154 l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 154 LKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 99999888876666666666666655 6999999999988887888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhcCCCChhh
Q 002443 401 YAEAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~P~~~~a 438 (921)
+++++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 999999999999999998 66778888888899987644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR02918 accessory Sec system glycosylation protein GtfA | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-10 Score=127.91 Aligned_cols=164 Identities=7% Similarity=0.005 Sum_probs=127.4
Q ss_pred EEEecC--CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcc
Q 002443 661 TFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 738 (921)
Q Consensus 661 ~~~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 738 (921)
++..+. ...|..+..++++..+.+..|+.+|.++|.+ +.++.+++.+++.|+. ++|.|.|.+. ....|.
T Consensus 321 ~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G----~~~~~l~~~i~~~~l~-~~V~f~G~~~----~~~~~~ 391 (500)
T TIGR02918 321 SIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG----GEKQKLQKIINENQAQ-DYIHLKGHRN----LSEVYK 391 (500)
T ss_pred EEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECc----hhHHHHHHHHHHcCCC-CeEEEcCCCC----HHHHHH
Confidence 344444 4589999999999999999999999999876 4567888888999997 8999999753 334566
Q ss_pred cccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC------C----HHHHHHHHHHH
Q 002443 739 LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK------N----EDEYVQLALQL 805 (921)
Q Consensus 739 ~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~i~~------~----~~~y~~~a~~l 805 (921)
.+|+++-|+-+ +.|.|++|||++|+|||+ ++++ ..=+-.-|..+++.. | .+++.+..+.|
T Consensus 392 ~adv~v~pS~~Egfgl~~lEAma~G~PVI~-------~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~l 464 (500)
T TIGR02918 392 DYELYLSASTSEGFGLTLMEAVGSGLGMIG-------FDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEY 464 (500)
T ss_pred hCCEEEEcCccccccHHHHHHHHhCCCEEE-------ecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHH
Confidence 79999998866 779999999999999998 5543 222223366666654 2 77888888888
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 806 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 806 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
.+ ++.+.++++..++.. .-|+++..+..++++++.
T Consensus 465 l~-~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 465 FN-SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred hC-hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Confidence 85 556888888888753 349999999999988764
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. |
| >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-10 Score=126.50 Aligned_cols=252 Identities=14% Similarity=0.106 Sum_probs=157.1
Q ss_pred HHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCC-------------CCCccEEEecCCCCCCC--cccCc
Q 002443 562 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPE--TKQKH 626 (921)
Q Consensus 562 i~~d~idiLvdl~g~t~~~r~~~~a~r~ApvQ~~~~G~p~ttG-------------~~~~Dy~i~d~~~~p~~--~~~~~ 626 (921)
+...++||++--.......-...+..+..|+-++|-+...... +...|.+|+-.-..-.. ....+
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~ 158 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRF 158 (357)
T ss_pred hcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCC
Confidence 5678999987533333322233333345677777654322221 12245555321000000 11233
Q ss_pred ccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHH
Q 002443 627 VEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 702 (921)
Q Consensus 627 ~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 702 (921)
.+++..+|+..-. +.+... ..........+.++++.+.+ ..|..+.+++++.++. +.+|++.|.+ .
T Consensus 159 ~~~~~~i~~gi~~~~~~~~~~--~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g----~ 228 (357)
T cd03795 159 RDKVRVIPLGLDPARYPRPDA--LEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEG----P 228 (357)
T ss_pred ccceEEecCCCChhhcCCcch--hhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCC----h
Confidence 4778888865321 111100 00001123344455666665 5788888888877654 7899998866 3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC---CCCcccHHHHhhcCCcEEecCCCcccccchh
Q 002443 703 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP---YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 779 (921)
Q Consensus 703 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~---~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 779 (921)
....+.+...+.+.. ++|.|.|.++ ..+....|..||+++-|.. .+.|.+.+|||++|+|||+ +++++
T Consensus 229 ~~~~~~~~~~~~~~~-~~V~~~g~v~-~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~-------~~~~~ 299 (357)
T cd03795 229 LEAELEALAAALGLL-DRVRFLGRLD-DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVIS-------TEIGT 299 (357)
T ss_pred hHHHHHHHHHhcCCc-ceEEEcCCCC-HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEe-------cCCCC
Confidence 556677777788887 8999999987 6788889999999998874 3678899999999999998 44332
Q ss_pred H--HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 002443 780 S--LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 834 (921)
Q Consensus 780 ~--~l~~~gl~~~i~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 834 (921)
. ++..-|-..++. .|.+++++....+.+|++.++.++...++.+.+ .|+...+
T Consensus 300 ~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~ 356 (357)
T cd03795 300 GGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEE--EFTADRM 356 (357)
T ss_pred chhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--hcchHhh
Confidence 1 111113334443 589999999999999999999999999887653 3666543
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-10 Score=127.44 Aligned_cols=171 Identities=22% Similarity=0.189 Sum_probs=132.6
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc---CCcEEEEecCCCCC----HHHHHHHHHHHHH-cCCCCCCEEEc
Q 002443 655 LTNGFITFGSFNNL--AKITPKVLQVWARILCAV---PNSRLVVKCKPFCC----DSVRHRFLSTLEQ-LGLESLRVDLL 724 (921)
Q Consensus 655 ~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~---p~~~l~~~~~~~~~----~~~~~~~~~~~~~-~gi~~~rv~~~ 724 (921)
..++.++|++++++ .|..+.+++++.++.... |+.+|+++|.+... ....+.+.+.+.+ .|++ ++|.|.
T Consensus 207 ~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~-~~V~f~ 285 (392)
T cd03805 207 PKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLE-DQVIFL 285 (392)
T ss_pred cCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCC-ceEEEe
Confidence 44566778887765 889999999999999887 89999999865321 1234677888888 8998 999999
Q ss_pred cCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhH--HHhhcCCcc-cccCCHHHHHH
Q 002443 725 PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKH-LIAKNEDEYVQ 800 (921)
Q Consensus 725 ~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~--~l~~~gl~~-~i~~~~~~y~~ 800 (921)
|.++ ..+....|..+|++|-|..+ +.|.+.+|||++|+|||+ +++++. ++.. |-.. ++..|.+++.+
T Consensus 286 g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~-------s~~~~~~e~i~~-~~~g~~~~~~~~~~a~ 356 (392)
T cd03805 286 PSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIA-------CNSGGPLETVVD-GETGFLCEPTPEEFAE 356 (392)
T ss_pred CCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEE-------ECCCCcHHHhcc-CCceEEeCCCHHHHHH
Confidence 9987 56777888999999977765 668999999999999998 444321 2222 2223 44568999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 002443 801 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 837 (921)
Q Consensus 801 ~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 837 (921)
....+.+|++.+..+++..++.+... |+++.++++
T Consensus 357 ~i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~ 391 (392)
T cd03805 357 AMLKLANDPDLADRMGAAGRKRVKEK--FSTEAFAER 391 (392)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHh--cCHHHHhhh
Confidence 99999999999999999988876533 888887765
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. |
| >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-09 Score=119.93 Aligned_cols=168 Identities=17% Similarity=0.123 Sum_probs=123.2
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002443 657 NGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
++.++|+.+++ ..|..+.+++++..+.+..|+.+|++.|.+......... .+.+.+.. ++|.|.|. ..+..
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~---~~~~~~~~-~~v~~~g~---~~~~~ 258 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL---EIEKLGLE-GRVEFLGF---RDDVP 258 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH---HHHhcCCc-ceEEEeec---cccHH
Confidence 44556776664 478899999999999888899999999876432222211 24556665 78999997 34677
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHHH
Q 002443 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTA 811 (921)
Q Consensus 735 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~--~~~~~y~~~a~~l~~d~~~ 811 (921)
..|..+|+++-|..+ +.|++.+|||++|+|||+-...... -++.. |-..++. .|.+++++....+..|++.
T Consensus 259 ~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~-----~~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~~ 332 (359)
T cd03808 259 ELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCR-----EAVID-GVNGFLVPPGDAEALADAIERLIEDPEL 332 (359)
T ss_pred HHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCch-----hhhhc-CcceEEECCCCHHHHHHHHHHHHhCHHH
Confidence 788889999988866 6688999999999999984332221 12221 3334443 4789999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002443 812 LANLRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 812 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e 839 (921)
+..++...++.... .|+...+++.++
T Consensus 333 ~~~~~~~~~~~~~~--~~s~~~~~~~~~ 358 (359)
T cd03808 333 RARMGQAARKRAEE--EFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHH--hcCHHHHHHHhh
Confidence 99999888887543 388888887765
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. |
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.3e-10 Score=130.89 Aligned_cols=174 Identities=11% Similarity=0.013 Sum_probs=126.1
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++||++.|+ .|..+.+++++.+++. ++.+|+|+|.|. .......+.....++|+. +||.|.+... ...-..
T Consensus 778 d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp-~~~~e~eL~~La~~l~l~-drV~FlG~~d-e~lah~ 852 (977)
T PLN02939 778 SQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSP-VPHIQREFEGIADQFQSN-NNIRLILKYD-EALSHS 852 (977)
T ss_pred cceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCC-cHHHHHHHHHHHHHcCCC-CeEEEEeccC-HHHHHH
Confidence 46789999976 8999999999998885 688999998652 223456777888888886 8999998754 222345
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhH----------HHhhcCCcccc--cCCHHHHHHHH
Q 002443 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS----------LLTKVGLKHLI--AKNEDEYVQLA 802 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~----------~l~~~gl~~~i--~~~~~~y~~~a 802 (921)
.|..+|+||-|+-| +.|.|.+|||++|+|+|+ +++|+- ....-|-.+++ ..|++++.+..
T Consensus 853 IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVV-------s~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL 925 (977)
T PLN02939 853 IYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIV-------RKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSAL 925 (977)
T ss_pred HHHhCCEEEECCCccCCcHHHHHHHHCCCCEEE-------ecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHH
Confidence 78889999999977 889999999999988775 455510 00000122333 24777776655
Q ss_pred HHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002443 803 LQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 848 (921)
Q Consensus 803 ~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 848 (921)
.++. .|++.+..++.+. |. .-|++..++..++++|+.+..+
T Consensus 926 ~rAL~~~~~dpe~~~~L~~~a---m~--~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 926 ERAFNYYKRKPEVWKQLVQKD---MN--IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHhccCHHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHHHHHh
Confidence 5443 4788887777532 32 4599999999999999998865
|
|
| >cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-10 Score=125.06 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=119.1
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecC
Q 002443 667 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 746 (921)
Q Consensus 667 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~ 746 (921)
...|..+.+++++.++....|+.+|.+.|.+ .....+....+..++. ++|.|.|.. .+....|..||++++|
T Consensus 214 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~ad~~v~~ 285 (372)
T cd04949 214 APEKQLDQLIKAFAKVVKQVPDATLDIYGYG----DEEEKLKELIEELGLE-DYVFLKGYT---RDLDEVYQKAQLSLLT 285 (372)
T ss_pred CcccCHHHHHHHHHHHHHhCCCcEEEEEEeC----chHHHHHHHHHHcCCc-ceEEEcCCC---CCHHHHHhhhhEEEec
Confidence 4689999999999999999999999999876 2345566667888887 899999853 4567778889999999
Q ss_pred CCC-CCcccHHHHhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002443 747 FPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRD 821 (921)
Q Consensus 747 ~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~i~~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~ 821 (921)
..+ +.|.+.+|||++|+|||+ ++++ ..-+-.-|-..++.. |.+++.+....+.+|++.+..+++..++
T Consensus 286 S~~Eg~~~~~lEAma~G~PvI~-------~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 358 (372)
T cd04949 286 SQSEGFGLSLMEALSHGLPVIS-------YDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYE 358 (372)
T ss_pred ccccccChHHHHHHhCCCCEEE-------ecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 977 778999999999999998 3332 111222255666666 9999999999999999999999988887
Q ss_pred HhhcCCCCChHHHHH
Q 002443 822 LMSKSPVCDGQNFAL 836 (921)
Q Consensus 822 ~~~~~~~~~~~~~~~ 836 (921)
.. .-|+++.++.
T Consensus 359 ~~---~~~s~~~~~~ 370 (372)
T cd04949 359 NA---ERYSEENVWE 370 (372)
T ss_pred HH---HHhhHHHHHh
Confidence 62 2366665443
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.1e-10 Score=102.45 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=101.7
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 45 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
+.+-+.++..|..++..|++++|.++|+-+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChH
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKP 151 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (921)
+++..|+.+.|.+.|+.++......+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999998754433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-09 Score=106.70 Aligned_cols=183 Identities=11% Similarity=0.030 Sum_probs=138.3
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HH
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC 117 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 117 (921)
...+++.++..|..++..|+|++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|++ +.
T Consensus 28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 34688899999999999999999999999999999988654 4899999999999999999999999998876 46
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 002443 118 AHTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (921)
Q Consensus 118 ~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~ 179 (921)
+++.+|.++...+ + ..+|+..|++.++..|+..-+... ... +..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~r--------------l~~ 169 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TKR--------------LVF 169 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HHH--------------HHH
Confidence 7888888764443 1 357889999999999987543111 110 011
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002443 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 180 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
++.. .+.--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|......
T Consensus 170 l~~~------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 170 LKDR------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHH------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1111 12223466777788888888888888888777654 56777788888888888887766544
|
|
| >cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-10 Score=123.45 Aligned_cols=166 Identities=19% Similarity=0.142 Sum_probs=124.8
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 659 FITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 659 ~~~~~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
.+.|++.... .|..+.++++|..+.+. .|+.++++.|.+.. ... .++. ++|.|+|.++..++...
T Consensus 193 ~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~--~~~---------~~~~-~~v~~~g~~~~~~~~~~ 260 (365)
T cd03825 193 IILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDP--EIP---------PDLP-FPVHYLGSLNDDESLAL 260 (365)
T ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch--hhh---------ccCC-CceEecCCcCCHHHHHH
Confidence 3456666554 89999999999987665 68899999876521 111 1454 78999999875667778
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHH
Q 002443 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTAL 812 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~--~~~~~y~~~a~~l~~d~~~~ 812 (921)
.|..+|++|-|+-+ +.|.+++|||.+|+|||+.....+..- +. -+-..++. .|.+++.+....+.+|++.+
T Consensus 261 ~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~-----~~-~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~ 334 (365)
T cd03825 261 IYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDI-----VD-HGVTGYLAKPGDPEDLAEGIEWLLADPDER 334 (365)
T ss_pred HHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhh-----ee-CCCceEEeCCCCHHHHHHHHHHHHhCHHHH
Confidence 88999999998865 789999999999999998433222221 11 12233343 37899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 813 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 813 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
.+++...++... ..|+++.+++.++++|+.
T Consensus 335 ~~~~~~~~~~~~--~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 335 EELGEAARELAE--NEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred HHHHHHHHHHHH--HhcCHHHHHHHHHHHHhh
Confidence 999999888764 348999999999999975
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. |
| >cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-10 Score=125.61 Aligned_cols=259 Identities=17% Similarity=0.099 Sum_probs=156.6
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCch-hhhhcCCCceEEeeccCCC----CC-CCCCccEEEecCCCCCCCcccCc--c
Q 002443 556 KKVAAMVREDKIDILVELTGHTANNKL-GMMACQPAPVQVTWIGYPN----TT-GLPTIDYRITDSLADPPETKQKH--V 627 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~-~~~a~r~ApvQ~~~~G~p~----tt-G~~~~Dy~i~d~~~~p~~~~~~~--~ 627 (921)
..+.+.|...++||++--.....+.-+ .....+..|+=++.-++.. .. -....|.+++-.-..-......+ .
T Consensus 86 ~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 165 (359)
T cd03823 86 AEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLLDRYVANGLFA 165 (359)
T ss_pred HHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHHHHHHHcCCCc
Confidence 456678888999998754432211111 1122334576554433211 11 11222555542110000011111 2
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHH
Q 002443 628 EELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 705 (921)
Q Consensus 628 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~ 705 (921)
+++..+|+.. .... .. +... ..+++.++|+.+.+. .|..+.+++++..+.. |+.+|++.|.+... .
T Consensus 166 ~~~~vi~n~~-~~~~--~~-~~~~--~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~----~ 233 (359)
T cd03823 166 EKISVIRNGI-DLDR--AK-RPRR--APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLEL----E 233 (359)
T ss_pred cceEEecCCc-Chhh--cc-cccc--CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCchhh----h
Confidence 4566666531 1111 11 1111 234555667776654 7888889999988776 89999999865321 1
Q ss_pred HHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC--CCCcccHHHHhhcCCcEEecCCCcccccchhHHHh
Q 002443 706 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 783 (921)
Q Consensus 706 ~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~--~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 783 (921)
...... +.. ++|.|.|.++ .++....|..+|+++-|.. .+.+.+.+|||++|+|||+-...... .++.
T Consensus 234 ~~~~~~---~~~-~~v~~~g~~~-~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----e~i~ 303 (359)
T cd03823 234 EESYEL---EGD-PRVEFLGAYP-QEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA-----ELVR 303 (359)
T ss_pred HHHHhh---cCC-CeEEEeCCCC-HHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH-----HHhc
Confidence 111111 444 7899999986 6888999999999998875 37788999999999999984322111 1122
Q ss_pred hcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 784 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 784 ~~gl~~~i~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
. |...++. .|.+++++....+.+|++.+..+++..++.... +.+++.++++|+
T Consensus 304 ~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 358 (359)
T cd03823 304 D-GVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSI------EDQAEEYLKLYR 358 (359)
T ss_pred C-CCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhH------HHHHHHHHHHhh
Confidence 2 2233443 457999999999999999999999988877532 788888888885
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). |
| >TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=124.06 Aligned_cols=162 Identities=11% Similarity=0.080 Sum_probs=118.7
Q ss_pred eEEEecCC--CCcCCHHHH----HHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHH
Q 002443 660 ITFGSFNN--LAKITPKVL----QVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 733 (921)
Q Consensus 660 ~~~~~~~~--~~K~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 733 (921)
.+++...+ ..|..+.++ ++|..|.+..|+.+|+++|.+. . .. +++++.. ++|.|+|.++ +.
T Consensus 225 ~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~----~-~~----~~~l~~~-~~V~~~G~v~---~~ 291 (397)
T TIGR03087 225 RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKP----S-PA----VRALAAL-PGVTVTGSVA---DV 291 (397)
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCC----h-HH----HHHhccC-CCeEEeeecC---CH
Confidence 34444444 466666555 6788888889999999998652 1 11 2334443 6899999876 34
Q ss_pred HHhcccccEEecCCCC--CCcccHHHHhhcCCcEEecCCCcccccchhHHHh-hcCCcccccCCHHHHHHHHHHHhcCHH
Q 002443 734 MQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIAKNEDEYVQLALQLASDVT 810 (921)
Q Consensus 734 ~~~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~-~~gl~~~i~~~~~~y~~~a~~l~~d~~ 810 (921)
...|..+||++-|+.+ +.+++.+|||+||+|||+-. ++..-+. .-|..-+++.|.+++.+...+|.+|++
T Consensus 292 ~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~-------~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 292 RPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASP-------EAAEGIDALPGAELLVAADPADFAAAILALLANPA 364 (397)
T ss_pred HHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecC-------cccccccccCCcceEeCCCHHHHHHHHHHHHcCHH
Confidence 5667779999988754 44668999999999999843 3221121 123333567899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 811 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
.++.++++.|+.+... |+++..++.+++.|.
T Consensus 365 ~~~~~~~~ar~~v~~~--fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 365 EREELGQAARRRVLQH--YHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhc
Confidence 9999999999886544 999999999999885
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=123.70 Aligned_cols=165 Identities=17% Similarity=0.115 Sum_probs=125.0
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002443 657 NGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
++.++|+.+++ ..|..+.+++++.++... |+.+|++.|.+. ....+. +. .++|.|.|.++ .++..
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~----~~~~~~------~~-~~~v~~~g~~~-~~~~~ 261 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDGP----ARARLE------AR-YPNVHFLGFLD-GEELA 261 (364)
T ss_pred CCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCCc----hHHHHh------cc-CCcEEEEeccC-HHHHH
Confidence 34455655554 478889999999999888 999999998652 222222 33 37899999865 57888
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHH
Q 002443 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTA 811 (921)
Q Consensus 735 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i--~~~~~~y~~~a~~l~~d~~~ 811 (921)
..|..+|++|-|... +.|+|.+|||++|+|||+-....+... +.. +-..++ ..+.+++++....+..|++.
T Consensus 262 ~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~-----i~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 262 AAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADI-----VTD-GENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhh-----hcC-CcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 899999999998866 778999999999999998665443332 222 223333 35677799999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 812 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 812 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
+..+....++.. .-|+++.+++.+++.|+
T Consensus 336 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 336 RRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 999999888775 34899999999998873
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-09 Score=117.77 Aligned_cols=313 Identities=12% Similarity=0.002 Sum_probs=170.8
Q ss_pred eeeccCCCcc------cchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEEccC------CCHH
Q 002443 489 VIGYVSPDYF------THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG------IDEK 556 (921)
Q Consensus 489 riGyvS~df~------~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~ 556 (921)
+|.++++.+. ...+..++..+...+.+...||++++......... ...... ...+..... ....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP--LVPVVP--EPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc--eeeccC--CCcccccchhhHhhHHHHH
Confidence 5677776652 22233445556666666778998887654321111 111000 011111000 0123
Q ss_pred HHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCCC------CCccEEEecCCCCCCCcccCcccce
Q 002443 557 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL------PTIDYRITDSLADPPETKQKHVEEL 630 (921)
Q Consensus 557 ~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~ApvQ~~~~G~p~ttG~------~~~Dy~i~d~~~~p~~~~~~~~e~~ 630 (921)
.+.+.|...++||+.--+..... .....+-.|+-++..|.+..... ...|.+++-........... .++
T Consensus 78 ~~~~~~~~~~~Divh~~~~~~~~---~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIVHNHSLHLPL---PFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPL--PWV 152 (335)
T ss_pred HHHHHHhcCCCCEEEecCcccch---hhhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhcccc--ccc
Confidence 56778888999999743322221 13344556777777666543221 22233332111111001111 455
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHH
Q 002443 631 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 710 (921)
Q Consensus 631 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~ 710 (921)
..+|+.. ++..-.+ .+ .....++|..--...|..+..+++..+ ++.+|+++|.+.. ...+...
T Consensus 153 ~vi~ngv---d~~~~~~----~~-~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~----~~~~~~~ 215 (335)
T cd03802 153 ATVHNGI---DLDDYPF----RG-PKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGPVSD----PDYFYRE 215 (335)
T ss_pred EEecCCc---ChhhCCC----CC-CCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeCCCC----HHHHHHH
Confidence 6666532 1110000 01 111223332222568888777776432 5789999987632 2233333
Q ss_pred HHHcC-CCCCCEEEccCcCCcHHHHHhcccccEEecCCC--CCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCC
Q 002443 711 LEQLG-LESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 787 (921)
Q Consensus 711 ~~~~g-i~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~--~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl 787 (921)
..... +. ++|.|.|.++ ..+....+..+|+++-|.. .+.|.+.+|||++|+|||+-....... +-.-|.
T Consensus 216 ~~~~~~~~-~~v~~~G~~~-~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e------~i~~~~ 287 (335)
T cd03802 216 IAPELLDG-PDIEYLGEVG-GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPE------VVEDGV 287 (335)
T ss_pred HHHhcccC-CcEEEeCCCC-HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchh------heeCCC
Confidence 33332 44 8999999987 5677788899999998874 477999999999999999833221111 111234
Q ss_pred cccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 788 KHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 788 ~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
..++..+.+++++....+..+.. +..|+... ..|+++.++.++++.|+
T Consensus 288 ~g~l~~~~~~l~~~l~~l~~~~~------~~~~~~~~--~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 288 TGFLVDSVEELAAAVARADRLDR------AACRRRAE--RRFSAARMVDDYLALYR 335 (335)
T ss_pred cEEEeCCHHHHHHHHHHHhccHH------HHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 55667778888888887765432 22333332 34899999999999884
|
aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. |
| >cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-10 Score=125.95 Aligned_cols=257 Identities=18% Similarity=0.154 Sum_probs=161.3
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhc--CCCceEEeeccCCCCC-----CCCCccEEEecCCCCCCCcc---cC
Q 002443 556 KKVAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWIGYPNTT-----GLPTIDYRITDSLADPPETK---QK 625 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~--r~ApvQ~~~~G~p~tt-----G~~~~Dy~i~d~~~~p~~~~---~~ 625 (921)
..+.+.+...++||++--+.++. -...++. .-.|+-.++.|+.... .+...|.+++-.--...... ..
T Consensus 68 ~~l~~~~~~~~~dii~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~ 145 (355)
T cd03819 68 ARLRRLIREEKVDIVHARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGV 145 (355)
T ss_pred HHHHHHHHHcCCCEEEECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCC
Confidence 35677888999999986443332 1222232 2367766666654322 12345666642111111111 12
Q ss_pred cccceEEcCCCcc--ccCCCCCCCC----CCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCC
Q 002443 626 HVEELIRLPECFL--CYTPSPEAGP----VCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKP 697 (921)
Q Consensus 626 ~~e~~~~lp~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 697 (921)
..+++..+|+..- .|.+...... .+.....+++.++++..++. .|..+.+++++..+....|+.+|+++|.+
T Consensus 146 ~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~ 225 (355)
T cd03819 146 DPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA 225 (355)
T ss_pred ChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 2467777776421 0111100000 00011234556666666654 89999999999999888889999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC-C-CCCcccHHHHhhcCCcEEecCCCcccc
Q 002443 698 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-P-YAGTTTTCESLYMGVPCVTMAGSVHAH 775 (921)
Q Consensus 698 ~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~-~-~~g~~t~~eal~~GvPvvt~~g~~~~~ 775 (921)
...+...+.+.+.+.+.|+. ++|.|.|.. ++....+..+|+++-|+ . .+.|+|.+|||++|+|||+-......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~- 300 (355)
T cd03819 226 QGRRFYYAELLELIKRLGLQ-DRVTFVGHC---SDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGAR- 300 (355)
T ss_pred cccchHHHHHHHHHHHcCCc-ceEEEcCCc---ccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcH-
Confidence 55555667777788888987 899999983 46777778899999988 3 47789999999999999983322111
Q ss_pred cchhHHHhhcCCcccc--cCCHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhh
Q 002443 776 NVGVSLLTKVGLKHLI--AKNEDEYVQLAL-QLASDVTALANLRMSLRDLMS 824 (921)
Q Consensus 776 r~~~~~l~~~gl~~~i--~~~~~~y~~~a~-~l~~d~~~~~~~r~~~~~~~~ 824 (921)
.++.. |...++ ..|.+++++... .+..|++.+.+++++.++.+.
T Consensus 301 ----e~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 301 ----ETVRP-GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred ----HHHhC-CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 11222 223333 358888888774 455689999999999888764
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. |
| >PLN02846 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.2e-10 Score=124.86 Aligned_cols=157 Identities=14% Similarity=0.055 Sum_probs=117.8
Q ss_pred EEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcc
Q 002443 661 TFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 738 (921)
Q Consensus 661 ~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 738 (921)
+++...++ .|..+.+++++.+|.+..|+.+|+|+|.| +.++.|++.+.+.|++ .++ |.|... .++ .|.
T Consensus 230 ~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdG----p~~~~L~~~a~~l~l~-~~v-f~G~~~-~~~---~~~ 299 (462)
T PLN02846 230 GAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSG----EDSDEVKAAAEKLELD-VRV-YPGRDH-ADP---LFH 299 (462)
T ss_pred EEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCC----ccHHHHHHHHHhcCCc-EEE-ECCCCC-HHH---HHH
Confidence 35555665 89999999999999998999999999987 6788899999999986 555 777643 344 445
Q ss_pred cccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002443 739 LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 816 (921)
Q Consensus 739 ~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r 816 (921)
.+|||+-|+.+ +.|++++|||+||+|||+ .++++ .++.. |-..+...|.+++++....+..++. ..++
T Consensus 300 ~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa-------~~~~~~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~~~--~~~~ 369 (462)
T PLN02846 300 DYKVFLNPSTTDVVCTTTAEALAMGKIVVC-------ANHPSNEFFKQ-FPNCRTYDDGKGFVRATLKALAEEP--APLT 369 (462)
T ss_pred hCCEEEECCCcccchHHHHHHHHcCCcEEE-------ecCCCcceeec-CCceEecCCHHHHHHHHHHHHccCc--hhHH
Confidence 57999999987 889999999999999998 33331 22222 5555667899999999998877542 2333
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 817 MSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
...++ .|+++..+++|++.|+
T Consensus 370 ~~a~~------~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 370 DAQRH------ELSWEAATERFLRVAD 390 (462)
T ss_pred HHHHH------hCCHHHHHHHHHHHhc
Confidence 33222 4889988888888875
|
|
| >cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.2e-10 Score=125.92 Aligned_cols=166 Identities=14% Similarity=0.192 Sum_probs=124.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE--EEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002443 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR--LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 657 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~--l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
++.++|+++.++ .|..+.+++++.++.+..|+.. +.++|.+ .....+++.++..+.. ++|.|+|.++ .++
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g----~~~~~l~~~~~~~~~~-~~V~f~G~v~-~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG----PLEDTLKELAESKPEN-ISVNFTGELS-NSE 301 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc----hHHHHHHHHHHhcCCC-ceEEEecCCC-hHH
Confidence 345567766654 7889999999999999888654 4556654 4566777777777776 8999999987 567
Q ss_pred HHHhcc--cccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhH--HHhhcCCccc-cc--CCHHHHHHHHHH
Q 002443 733 HMQAYS--LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHL-IA--KNEDEYVQLALQ 804 (921)
Q Consensus 733 ~~~~~~--~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~--~l~~~gl~~~-i~--~~~~~y~~~a~~ 804 (921)
....|. .+|+++-|+.+ +.+.+.+|||++|+|||+ +++|+. ++.. |-.++ +. .|.+++++...+
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa-------s~vgg~~e~i~~-~~~G~l~~~~~~~~~la~~I~~ 373 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA-------TNVGGTPEIVDN-GGNGLLLSKDPTPNELVSSLSK 373 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe-------CCCCCcHHHhcC-CCcEEEeCCCCCHHHHHHHHHH
Confidence 777775 47899888866 778899999999999997 666521 1111 22223 33 378999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002443 805 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 805 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 838 (921)
+.+|++.+..++++.|+..... |+.+...+.|
T Consensus 374 ll~~~~~~~~m~~~ar~~~~~~--f~~~~~~~~~ 405 (407)
T cd04946 374 FIDNEEEYQTMREKAREKWEEN--FNASKNYREF 405 (407)
T ss_pred HHhCHHHHHHHHHHHHHHHHHH--cCHHHhHHHh
Confidence 9999999999999999987544 8887766654
|
AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. |
| >TIGR02470 sucr_synth sucrose synthase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=128.44 Aligned_cols=179 Identities=13% Similarity=0.087 Sum_probs=130.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----CH---HHHHHHHHHHHHcCCCCCCEEEccCc
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----CD---SVRHRFLSTLEQLGLESLRVDLLPLI 727 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~~---~~~~~~~~~~~~~gi~~~rv~~~~~~ 727 (921)
+..++++..|+ .|..+.+++++.++....+++.|+|+|++.. +. ...+++.+.+.+.|+. ++|.|+|..
T Consensus 549 ~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~-g~V~flG~~ 627 (784)
T TIGR02470 549 NKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLH-GQIRWIGAQ 627 (784)
T ss_pred CCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCC-CeEEEccCc
Confidence 44457777766 7999999999988765557899999986532 11 2446788889999998 999999975
Q ss_pred CCcH---HHHHhc-ccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhh--cCCccccc--CCHHHH
Q 002443 728 LLNH---DHMQAY-SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK--VGLKHLIA--KNEDEY 798 (921)
Q Consensus 728 ~~~~---~~~~~~-~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~--~gl~~~i~--~~~~~y 798 (921)
.+.. ++...+ +.+|||+-|.-| +.|.|.+|||+||+|||+ +++|+ +-.. -|..+++. .|.+++
T Consensus 628 ~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-------T~~GG-~~EiV~dg~tGfLVdp~D~eaL 699 (784)
T TIGR02470 628 LNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-------TRFGG-PLEIIQDGVSGFHIDPYHGEEA 699 (784)
T ss_pred CCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE-------cCCCC-HHHHhcCCCcEEEeCCCCHHHH
Confidence 3222 333332 346899988877 889999999999999997 77772 1111 13333333 477888
Q ss_pred HHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHHH
Q 002443 799 VQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMWH 847 (921)
Q Consensus 799 ~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~ 847 (921)
.+...++. +|++.+.++++..++++.. .|+++.+++.+.+... ..|.
T Consensus 700 A~aL~~ll~kll~dp~~~~~ms~~a~~rV~~--~FSW~~~A~~ll~l~~~~~~~~ 752 (784)
T TIGR02470 700 AEKIVDFFEKCDEDPSYWQKISQGGLQRIYE--KYTWKIYSERLLTLAGIYGFWK 752 (784)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhhhHhh
Confidence 88777654 7999999999998887644 4999999999998875 4574
|
This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. |
| >cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-09 Score=119.53 Aligned_cols=159 Identities=11% Similarity=0.126 Sum_probs=115.8
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecC
Q 002443 667 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 746 (921)
Q Consensus 667 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~ 746 (921)
...|....+++++.++.. +.+|+++|.+.......+.+.+ ..++. ++|.|.|.++ .++....+..+|+++-|
T Consensus 203 ~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~---~~~~~-~~V~~~g~~~-~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 203 VPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKE---KAAAD-PRIIFVGPIY-DQELLELLRYAALFYLH 274 (363)
T ss_pred cccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHH---HhCCC-CcEEEccccC-hHHHHHHHHhCCEEEeC
Confidence 457888888888887643 7899999876333333333322 45665 8999999987 57788888889999877
Q ss_pred CCC--CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002443 747 FPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMS 824 (921)
Q Consensus 747 ~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~ 824 (921)
... +.+.+.+|||++|+|||| +++++ +-..++-..++....+.+.+...+|.+|++.+..++...++...
T Consensus 275 s~~~e~~~~~~~EAma~G~PvI~-------s~~~~-~~e~~~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 346 (363)
T cd04955 275 GHSVGGTNPSLLEAMAYGCPVLA-------SDNPF-NREVLGDKAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIR 346 (363)
T ss_pred CccCCCCChHHHHHHHcCCCEEE-------ecCCc-cceeecCCeeEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 754 668899999999999998 55541 00111112233344444889999999999999999998888764
Q ss_pred cCCCCChHHHHHHHHHHHH
Q 002443 825 KSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 825 ~~~~~~~~~~~~~~e~~~~ 843 (921)
. .|+++.++.++++.|+
T Consensus 347 ~--~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 347 E--KYTWEKIADQYEELYK 363 (363)
T ss_pred H--hCCHHHHHHHHHHHhC
Confidence 3 4899999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >PLN00142 sucrose synthase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=127.68 Aligned_cols=177 Identities=14% Similarity=0.037 Sum_probs=130.6
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----CHH---HHHHHHHHHHHcCCCCCCEEEccCcC
Q 002443 659 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----CDS---VRHRFLSTLEQLGLESLRVDLLPLIL 728 (921)
Q Consensus 659 ~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~~~---~~~~~~~~~~~~gi~~~rv~~~~~~~ 728 (921)
..++++..|+ .|..+.++++++++.+..|+++|+|+|++.. +.. ...++.+.+.+.|+. ++|.|+|...
T Consensus 573 kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~-~~V~flG~~~ 651 (815)
T PLN00142 573 KPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLK-GQFRWIAAQT 651 (815)
T ss_pred CcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCC-CcEEEcCCcC
Confidence 3457777766 7889999999999877778999999986521 111 235678888999998 9999998643
Q ss_pred C---cHHHHHhcc-cccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHh--hcCCccccc--CCHHHHH
Q 002443 729 L---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT--KVGLKHLIA--KNEDEYV 799 (921)
Q Consensus 729 ~---~~~~~~~~~-~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~--~~gl~~~i~--~~~~~y~ 799 (921)
. ..+....+. .+|||+-|+-| +.|.|.+|||+||+|||+ +++|+ +-. .-|...++. .|.+++.
T Consensus 652 ~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVA-------TdvGG-~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 652 NRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCQGG-PAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred CcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEE-------cCCCC-HHHHhcCCCcEEEeCCCCHHHHH
Confidence 2 244555444 47999988877 779999999999999997 66662 111 114444443 4788887
Q ss_pred HHHHH----HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHH
Q 002443 800 QLALQ----LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMW 846 (921)
Q Consensus 800 ~~a~~----l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~ 846 (921)
+.... +..|++.+.++++..++++.+ .|+++.++.++++.-. ..|
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e--~FSWe~~A~rll~L~~~~~~~ 774 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYE--CYTWKIYAERLLTLGGVYGFW 774 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhcchh
Confidence 77654 458999999999998888654 4999999999998764 356
|
|
| >cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=120.84 Aligned_cols=168 Identities=18% Similarity=0.124 Sum_probs=123.4
Q ss_pred CCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 658 GFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++++.+++ ..|..+.+++++..+....|+.+|++.|.+.... ......+++.+.. ++|.|.|.++ ..+...
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~---~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~ 268 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLN---EELLARLRELGLG-DRVRFLGYVS-DEELAA 268 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCcccc---HHHHHHHHHcCCC-CeEEECCCCC-hhHHHH
Confidence 3344555554 4788999999999999998889999988643221 2222333567776 8999999987 578888
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHH
Q 002443 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 814 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~ 814 (921)
.+..+|++|-|.-+ +.|.+.+|||++|+|||+-....+..-++ ..|. -+...|.+++++....+.+|++.+..
T Consensus 269 ~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-----~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~ 342 (365)
T cd03809 269 LYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAG-----DAAL-YFDPLDPEALAAAIERLLEDPALREE 342 (365)
T ss_pred HHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceec-----Ccee-eeCCCCHHHHHHHHHHHhcCHHHHHH
Confidence 99999999988765 66889999999999999844332222111 1111 13356899999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHH
Q 002443 815 LRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 815 ~r~~~~~~~~~~~~~~~~~~~~~~e 839 (921)
+++..++.. .-|+++.+++.+.
T Consensus 343 ~~~~~~~~~---~~~sw~~~~~~~~ 364 (365)
T cd03809 343 LRERGLARA---KRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHH---HhCCHHHHHHHHh
Confidence 998887543 3388988887764
|
mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-07 Score=105.54 Aligned_cols=325 Identities=17% Similarity=0.175 Sum_probs=213.2
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH------------HHHHHhCCCCHHHHHHHHHHH
Q 002443 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF------------SEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~ 126 (921)
...|+.+.|.+..+-+ .+...|-+++....+..+.+-|.-++ +++.+ +|+ +.-...|.+.
T Consensus 739 vtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHH
Confidence 3468888887766554 23457777887777776666655443 33322 333 3334566777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
..+|-.++|..+|++.-+ +-.+-..|...|.+++|.+.-+.--.+ ..-..|++.+..+...++
T Consensus 811 ieLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc
Confidence 889999999999998754 333455677789999988876542221 234578899999999999
Q ss_pred HHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q 002443 207 YDTALGCYEKA----------ALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (921)
Q Consensus 207 ~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (921)
.+.|+++|+++ +..+| .+...|...|..+...|+.+.|+.+|..+-+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------- 940 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------------- 940 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------------
Confidence 99999999986 23333 2456777788888999999999999988653
Q ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCC-------
Q 002443 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC------- 333 (921)
Q Consensus 267 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~------- 333 (921)
++.+-.+...+|+.++|..+.++ ..+..+.+.+|..|...|++.+|+.+|.++-.. ..++
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 23344455556777777665554 245566777778888888887777777665433 1111
Q ss_pred -------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hh-----------------hCC-CCHHHHHHHHHHHHHc
Q 002443 334 -------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQ 381 (921)
Q Consensus 334 -------~~~~~~la~~~~~~g-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~ 381 (921)
..-....+..|...| +.+.|..+|.+| ++ +++ .++..+..-+..+...
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 111122334444444 555555555432 21 123 4577888888888888
Q ss_pred CCHHHHHHHHHHH------HHhC----------------CC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 382 GKMDAAAEMIEKA------IAAN----------------PT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 382 g~~~~A~~~l~~a------l~~~----------------p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
.+|++|..++-.+ +++. |. ...++..+|.++.++|.|..|-+-|.+|
T Consensus 1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9999988766544 3321 11 1357888999999999999998888776
|
|
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=129.12 Aligned_cols=172 Identities=16% Similarity=0.064 Sum_probs=128.9
Q ss_pred CCCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCCEEEccCcC
Q 002443 653 PALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLRVDLLPLIL 728 (921)
Q Consensus 653 ~~~~-~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~-~~rv~~~~~~~ 728 (921)
.+++ .+.+++|+..|+ .|..+.+++++.++++ ++.+|+|+|.|- +......|++...++|+. ++||.|.+...
T Consensus 833 lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gp-d~~~e~~l~~La~~Lg~~~~~rV~f~g~~d 909 (1036)
T PLN02316 833 LGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAP-DPRIQNDFVNLANQLHSSHHDRARLCLTYD 909 (1036)
T ss_pred hCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCC-CHHHHHHHHHHHHHhCccCCCeEEEEecCC
Confidence 3454 356789999977 7899999999999886 579999988652 334677888888888884 58999987543
Q ss_pred CcHHH-HHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccC-------------
Q 002443 729 LNHDH-MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------------- 793 (921)
Q Consensus 729 ~~~~~-~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~------------- 793 (921)
+.. ...|..+||||-|+-| +.|.|.+|||++|+|+|+ +++| |++|.|.+
T Consensus 910 --e~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-------s~vG-------GL~DtV~d~d~~~~~~~~~g~ 973 (1036)
T PLN02316 910 --EPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-------RKTG-------GLFDTVFDVDHDKERAQAQGL 973 (1036)
T ss_pred --HHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-------EcCC-------CcHhhcccccccccccccccc
Confidence 222 2578889999999977 889999999999987765 5666 55555422
Q ss_pred ----------CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002443 794 ----------NEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 794 ----------~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 845 (921)
|++++.....++..+ +..+..+++..+..|. .-|++...++.++++|+++
T Consensus 974 ~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~--~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 974 EPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVME--QDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred CCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHHH
Confidence 567777766666665 3444556666666664 4499999999999999875
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-09 Score=102.84 Aligned_cols=282 Identities=18% Similarity=0.140 Sum_probs=203.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
.+..+|.+|++++..-.+.+|.+... +..+|.+|+...++..|..+|++.-...|......+..+..+++.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 56778888888888888888876544 66678888888889999999998888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHH
Q 002443 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
+..|+.....+.....-.......-+.+.+..+++..+....++.-.. +. +....+.|-+..+.|+++.|+
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~-------Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NE-------ADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cc-------cchhccchheeeccccHHHHH
Confidence 888888877765432222344445566666777777776655543211 11 234455666777788999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC----------------C---------HHHH
Q 002443 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPH----------------C---------AEAC 337 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~----------------~---------~~~~ 337 (921)
+-|+.+++...-.+-.-++++.+++..++++.|+++..+.++. .|+ + .+++
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9999999988888888899999999999999999888887764 221 1 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 338 NNLGVIYKDRDNLDKAVECYQMALSI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
+..+-++++.++++.|.+.+...--. ..-++..+.+++..- ..+++.+...-++-.++++|--.+.+.++-.+|.+.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhh
Confidence 66777888888888887665432111 112355667766543 345677777777888888887778888888888888
Q ss_pred CCHHHHHHHH
Q 002443 416 GSISLAIDAY 425 (921)
Q Consensus 416 g~~~~A~~~~ 425 (921)
.-++.|.+.+
T Consensus 324 eyf~lAADvL 333 (459)
T KOG4340|consen 324 EYFDLAADVL 333 (459)
T ss_pred HHHhHHHHHH
Confidence 7777776543
|
|
| >cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-09 Score=119.07 Aligned_cols=174 Identities=16% Similarity=0.122 Sum_probs=131.1
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC--HHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002443 656 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 656 ~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
+.+.++|+.++++ .|..+.+++++.++....|+.+|+++|++... ......+....+..|+. ++|.|.|.++ ..
T Consensus 217 ~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~ 294 (398)
T cd03800 217 DPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVI-DRVDFPGRVS-RE 294 (398)
T ss_pred CCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCC-ceEEEeccCC-HH
Confidence 3455667777755 67889999999999988999999999865432 12234466677788887 8999999987 57
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcC
Q 002443 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 808 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~--~~~~~y~~~a~~l~~d 808 (921)
+....+..+|++|-|.-+ +.|.+.+|||++|+|||+-..... ..++.. +-..++. .|.+++++....+.+|
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~-----~e~i~~-~~~g~~~~~~~~~~l~~~i~~l~~~ 368 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGP-----RDIVVD-GVTGLLVDPRDPEALAAALRRLLTD 368 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCH-----HHHccC-CCCeEEeCCCCHHHHHHHHHHHHhC
Confidence 888889999999988765 668899999999999997332211 112222 2223443 4799999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002443 809 VTALANLRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 809 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 839 (921)
++.+..++...++.... .|+++.++..++
T Consensus 369 ~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~ 397 (398)
T cd03800 369 PALRRRLSRAGLRRARA--RYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHH--hCCHHHHHHHHh
Confidence 99999999988887543 388888887765
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. |
| >TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=123.34 Aligned_cols=173 Identities=14% Similarity=0.026 Sum_probs=122.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHH--HhHcCCcEEEEecCCCCCH-------HHHHHHHHHHHHcCCCCCCEEEccC
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARI--LCAVPNSRLVVKCKPFCCD-------SVRHRFLSTLEQLGLESLRVDLLPL 726 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~~-------~~~~~~~~~~~~~gi~~~rv~~~~~ 726 (921)
+..+++++.++ .|..+.++++++++ +...++.+| +.|.+-..+ ...+.+.....+.|+. ++|.|.|.
T Consensus 247 ~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~l-i~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~-~~V~f~g~ 324 (439)
T TIGR02472 247 EKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVL-VLGCRDDIRKMESQQREVLQKVLLLIDRYDLY-GKVAYPKH 324 (439)
T ss_pred CCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEE-EeCCccccccccHHHHHHHHHHHHHHHHcCCC-ceEEecCC
Confidence 33456666654 79999999999864 233344332 444431111 1233456667888997 89999998
Q ss_pred cCCcHHHHHhcccc----cEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHH-HhhcCCcccc--cCCHHHH
Q 002443 727 ILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLI--AKNEDEY 798 (921)
Q Consensus 727 ~~~~~~~~~~~~~~----Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~-l~~~gl~~~i--~~~~~~y 798 (921)
++ .++....|..+ ||++-|+-+ +.|.|.+|||++|+|||+ +++++.- +-.-|-..++ ..|.+++
T Consensus 325 ~~-~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~-------s~~gg~~eiv~~~~~G~lv~~~d~~~l 396 (439)
T TIGR02472 325 HR-PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVA-------TDDGGPRDIIANCRNGLLVDVLDLEAI 396 (439)
T ss_pred CC-HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEE-------eCCCCcHHHhcCCCcEEEeCCCCHHHH
Confidence 76 56666777655 999888766 669999999999999997 6665110 1111223344 3588999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002443 799 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 799 ~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 842 (921)
.+...++.+|++.++++.++.|+++.. .|+++.++.++++.+
T Consensus 397 a~~i~~ll~~~~~~~~~~~~a~~~~~~--~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 397 ASALEDALSDSSQWQLWSRNGIEGVRR--HYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHh
Confidence 999999999999999999999988643 499999999988765
|
This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-08 Score=106.46 Aligned_cols=155 Identities=23% Similarity=0.238 Sum_probs=138.3
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 002443 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (921)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 158 (921)
|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...|+.++|.+.+++++...|.....
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l------ 376 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL------ 376 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH------
Confidence 78889999999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 002443 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (921)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (921)
..++|..+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|... .+..|...
T Consensus 377 -~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~ 438 (484)
T COG4783 377 -QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALA 438 (484)
T ss_pred -HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhC
Confidence 667788888889999999999999999999999999999999999987766544 45667788
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 002443 239 GDLESAIACYERCLAVSPN 257 (921)
Q Consensus 239 g~~~~A~~~~~~al~~~p~ 257 (921)
|++++|+..+..+.+...-
T Consensus 439 G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 439 GRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CCHHHHHHHHHHHHHhccC
Confidence 9999999999998887643
|
|
| >TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=128.19 Aligned_cols=179 Identities=15% Similarity=0.074 Sum_probs=134.4
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhH--cCCcEEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCCEEEcc
Q 002443 657 NGFITFGSFNNL--AKITPKVLQVWARILCA--VPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLLP 725 (921)
Q Consensus 657 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~-------~~~~~~~~~~~~~~~gi~~~rv~~~~ 725 (921)
.+.+++.+..++ .|....+++++..+... .|+.++ ++|.+-. .......+...+.+.|+. ++|.|.|
T Consensus 477 pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~-g~V~FlG 554 (1050)
T TIGR02468 477 PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLY-GQVAYPK 554 (1050)
T ss_pred CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEecCchhhhhhccchHHHHHHHHHHHHhCCC-CeEEecC
Confidence 344456677765 89999999999988653 355554 3443211 123456788888999997 9999999
Q ss_pred CcCCcHHHHHhcccc----cEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHH-HhhcCCccccc--CCHHH
Q 002443 726 LILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLIA--KNEDE 797 (921)
Q Consensus 726 ~~~~~~~~~~~~~~~----Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~-l~~~gl~~~i~--~~~~~ 797 (921)
.++ ..+....|+.| |||+-|.-+ +.|.|.+|||+||+|||+ +++|+.- +..-|...+++ .|.++
T Consensus 555 ~v~-~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA-------SdvGG~~EII~~g~nGlLVdP~D~ea 626 (1050)
T TIGR02468 555 HHK-QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA-------TKNGGPVDIHRVLDNGLLVDPHDQQA 626 (1050)
T ss_pred CCC-HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE-------eCCCCcHHHhccCCcEEEECCCCHHH
Confidence 876 56777777766 699998877 889999999999999997 6666210 11123344443 48999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002443 798 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 848 (921)
Q Consensus 798 y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 848 (921)
+.+....|.+|++.++++++..+++.. .|++...++.+.+.+...-.|
T Consensus 627 LA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~ 674 (1050)
T TIGR02468 627 IADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPR 674 (1050)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988763 499999999999999877544
|
Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. |
| >KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=109.81 Aligned_cols=208 Identities=20% Similarity=0.234 Sum_probs=148.9
Q ss_pred CCccEEEecCCCCCCCc---ccCcccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHH
Q 002443 606 PTIDYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQV 678 (921)
Q Consensus 606 ~~~Dy~i~d~~~~p~~~---~~~~~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~ 678 (921)
..+|-.|.=.++.-+.+ ...-.+++.-+|+.-- .|.|.+.. ..+++.++.-..+|+ .|..+-.+.+
T Consensus 144 ~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~-------~~S~~i~~ivv~sRLvyrKGiDll~~i 216 (426)
T KOG1111|consen 144 ANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD-------KPSADIITIVVASRLVYRKGIDLLLEI 216 (426)
T ss_pred cCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc-------cCCCCeeEEEEEeeeeeccchHHHHHH
Confidence 44555554334444333 2334577888887422 24442211 122343555556676 7999999999
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC-CCCcccHHH
Q 002443 679 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-YAGTTTTCE 757 (921)
Q Consensus 679 ~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~-~~g~~t~~e 757 (921)
-.+|-+..|+.++++.|.| +-+..+++..+++-+. +||.++|.++ +++.-..|..-||||.|+- ...|++.+|
T Consensus 217 Ip~vc~~~p~vrfii~GDG----Pk~i~lee~lEk~~l~-~rV~~lG~v~-h~~Vr~vl~~G~IFlntSlTEafc~~ivE 290 (426)
T KOG1111|consen 217 IPSVCDKHPEVRFIIIGDG----PKRIDLEEMLEKLFLQ-DRVVMLGTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIVE 290 (426)
T ss_pred HHHHHhcCCCeeEEEecCC----cccchHHHHHHHhhcc-CceEEecccc-hHHHHHHHhcCcEEeccHHHHHHHHHHHH
Confidence 9999999999999999877 6777888888888887 9999999998 7888999999999999995 489999999
Q ss_pred HhhcCCcEEecCCCcccccchhHHHhhcCCcccccCC--------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCC
Q 002443 758 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN--------EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVC 829 (921)
Q Consensus 758 al~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~--------~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~ 829 (921)
|+.||+|||+ .|+| |+||.+..| +++.++....-.... ...-....+++ +.++
T Consensus 291 AaScGL~VVs-------TrVG-------GIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~---~~~p~~~h~~v--~~~y 351 (426)
T KOG1111|consen 291 AASCGLPVVS-------TRVG-------GIPEVLPEDMITLGEPGPDDLVGAVEKAITKL---RTLPLEFHDRV--KKMY 351 (426)
T ss_pred HHhCCCEEEE-------eecC-------CccccCCccceeccCCChHHHHHHHHHHHHHh---ccCchhHHHHH--HHhc
Confidence 9999999998 9999 999877554 444444433332221 11112234444 4669
Q ss_pred ChHHHHHHHHHHHHHH
Q 002443 830 DGQNFALGLESTYRNM 845 (921)
Q Consensus 830 ~~~~~~~~~e~~~~~~ 845 (921)
+|+..++.-|..|.++
T Consensus 352 ~w~dVa~rTekvy~r~ 367 (426)
T KOG1111|consen 352 SWKDVAERTEKVYDRA 367 (426)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999999765
|
|
| >PLN02501 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=121.88 Aligned_cols=260 Identities=11% Similarity=-0.002 Sum_probs=157.9
Q ss_pred CHHHHHHHHHhCCccEEEecC-CCCCCCchh-hhhcCCCceEEeec----cCCCCCCCCCccE--------EE----ecC
Q 002443 554 DEKKVAAMVREDKIDILVELT-GHTANNKLG-MMACQPAPVQVTWI----GYPNTTGLPTIDY--------RI----TDS 615 (921)
Q Consensus 554 ~~~~~a~~i~~d~idiLvdl~-g~t~~~r~~-~~a~r~ApvQ~~~~----G~p~ttG~~~~Dy--------~i----~d~ 615 (921)
+-..+.+.|.+.++||++=-+ +|-+....+ ..|.|.-||-.++- .|-..-|+..+-- ++ +|.
T Consensus 422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~ 501 (794)
T PLN02501 422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK 501 (794)
T ss_pred chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence 347799999999999987222 222222111 23455557654442 2222222222111 11 455
Q ss_pred CCCCCCcccCcccceEEcCCCcc---ccCCCCCCCCCCCCCCC---CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCc
Q 002443 616 LADPPETKQKHVEELIRLPECFL---CYTPSPEAGPVCPTPAL---TNGFITFGSFNNLAKITPKVLQVWARILCAVPNS 689 (921)
Q Consensus 616 ~~~p~~~~~~~~e~~~~lp~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~ 689 (921)
++.|.+....+..+.+...+ ++ .|.|....... ...++ +.+ +.|..==...|....++++|..+....|+.
T Consensus 502 VIaPS~atq~L~~~vI~nVn-GVDte~F~P~~r~~~~-r~lgi~~~~kg-iLfVGRLa~EKGld~LLeAla~L~~~~pnv 578 (794)
T PLN02501 502 VLRLSAATQDLPKSVICNVH-GVNPKFLKIGEKVAEE-RELGQQAFSKG-AYFLGKMVWAKGYRELIDLLAKHKNELDGF 578 (794)
T ss_pred EEcCCHHHHHhcccceeecc-cccccccCCcchhHHH-HhcCCccccCc-eEEEEcccccCCHHHHHHHHHHHHhhCCCe
Confidence 66665443333333333222 22 13332211100 11122 233 334332245999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEec
Q 002443 690 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 768 (921)
Q Consensus 690 ~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~ 768 (921)
+|+|+|.| +.++.+++.+.++|+. |.|+|...... ..|+.+|||+-|+.+ +.|++++|||+||+|||+-
T Consensus 579 rLvIVGDG----P~reeLe~la~eLgL~---V~FLG~~dd~~---~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVAT 648 (794)
T PLN02501 579 NLDVFGNG----EDAHEVQRAAKRLDLN---LNFLKGRDHAD---DSLHGYKVFINPSISDVLCTATAEALAMGKFVVCA 648 (794)
T ss_pred EEEEEcCC----ccHHHHHHHHHHcCCE---EEecCCCCCHH---HHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEe
Confidence 99999876 5677888888888883 89998765322 456679999999877 7799999999999999984
Q ss_pred CCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002443 769 AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 841 (921)
Q Consensus 769 ~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 841 (921)
++++.-.-.-|-..++..|.+++++.+.++..|++.+...+ + ..-++++.++..|++.
T Consensus 649 -------d~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~----a----~~~~SWeAaadrLle~ 706 (794)
T PLN02501 649 -------DHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPE----Q----RYNLSWEAATQRFMEY 706 (794)
T ss_pred -------cCCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHH----H----HhhCCHHHHHHHHHHh
Confidence 33211111113344567899999999999999886432222 1 1147888888877754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.2e-08 Score=99.67 Aligned_cols=248 Identities=14% Similarity=0.133 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 002443 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------A 225 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 225 (921)
-.++.+++..+.+..++.+++.+-+..+.+... -..+...++..+..++.++++++.|+++++...++ .
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 345677777777778888898888877776322 23567779999999999999999999999874432 3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC-----
Q 002443 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW----- 297 (921)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----- 297 (921)
.++..+|.++....++++|+-+..++.++..... ......+.+++.++..+..+|..-.|.++.+++.++.-
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 5788999999999999999999999988754322 11122234455555555666666666666666554421
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002443 298 -HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (921)
Q Consensus 298 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (921)
........+|.+|...|+.+.|..-|+.+...... +-..+|. .+++...+.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~---~gdrmgq-------------------------v~al~g~Ak 294 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS---LGDRMGQ-------------------------VEALDGAAK 294 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh---hhhhHHH-------------------------HHHHHHHHH
Confidence 12233444555555555555555555554432110 0001111 223333344
Q ss_pred HHHHcCCHH-----HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002443 377 VYTVQGKMD-----AAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 377 ~~~~~g~~~-----~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
++....-.. .|++.-++++++.... ...+..++.+|..+|.-++=...+.++-+..
T Consensus 295 c~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 295 CLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 433332222 2666666666553221 3567778888888887777777777665543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-08 Score=101.54 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=125.7
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (921)
.+.+.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 367899999999999999999999999999998875 47899999999999999999999999999999864 588
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002443 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (921)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (921)
+.+|.+++... ...+|+..|+..++..|++.-+... -. -+..++..+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A----~~--------------~l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA----KK--------------RLAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH----HH--------------HHHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH----HH--------------HHHHHHHHH----
Confidence 88888876543 3458999999999999997654211 00 011111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHH
Q 002443 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAI 245 (921)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 245 (921)
+.--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..|..+|..+.|.
T Consensus 141 --a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 --AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2233456777777777777777777777777765 346777777777777777443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=116.53 Aligned_cols=110 Identities=20% Similarity=0.121 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002443 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (921)
..+...|..++..|+|++|+.+|+++++.+|+++.+++.+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 002443 129 EGRLVEAAESYHKALSADPSYKPAAECLAI 158 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 158 (921)
.|++++|+..|+++++++|++......+..
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999876544433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-08 Score=102.81 Aligned_cols=239 Identities=17% Similarity=0.147 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHH
Q 002443 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (921)
.+++.+++..+.+..++.+++.+-+..+...... ......++..+..++.++++++.|+++++...++.+....
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE- 161 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE- 161 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee-
Confidence 4566777777777777777777776666543222 2455667777777777777777777777654333222111
Q ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002443 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341 (921)
Q Consensus 266 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 341 (921)
.+++..+|..+....++++|+-+..++.++... +.... ....+++.++
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k----------------------------yr~~~lyhma 213 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK----------------------------YRAMSLYHMA 213 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH----------------------------HHHHHHHHHH
Confidence 123334444444444555555555544433211 00000 0023445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHH
Q 002443 342 VIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLG 409 (921)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la 409 (921)
..+..+|..-.|.++.+++.++. +........+|.+|...|+.+.|..-|+++..... ...+++...|
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~A 293 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAA 293 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 66666666666666666665542 22344556667777777777777766666665421 1134555556
Q ss_pred HHHHHcCCHHH-----HHHHHHHHhhcCCCC----hhhHhhHHHHhhhccCCChHHHH
Q 002443 410 VLYRDAGSISL-----AIDAYEQCLKIDPDS----RNAGQNRLLAMNYINEGHDDKLF 458 (921)
Q Consensus 410 ~~~~~~g~~~~-----A~~~~~~al~l~P~~----~~a~~~~l~a~~~~~~~~~~~~~ 458 (921)
.++....-..+ |++.-++++++...- ........++..|-..|..++.-
T Consensus 294 kc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 294 KCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHH
Confidence 66555444343 777777777764432 22233445677776666555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-08 Score=107.19 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002443 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (921)
Q Consensus 297 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (921)
|....+.+..+..++..|++++|+..++..+...|+|+..+...+.++.+.++.++|.+.+++++.++|+......++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCC
Q 002443 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452 (921)
Q Consensus 377 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~ 452 (921)
+|.+.|++.+|+..++..+..+|+++..|..||+.|..+|+..+|...+.+.+.+.-+...+..-...+..-...+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999988887777766555544444333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-08 Score=100.61 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=134.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHH
Q 002443 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (921)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (921)
.++..++..|..++..|++++|++.|++++...|....+ .+.+|.++++.+++++|+..+++.++..|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 467788999999999999999999999999999988654 4899999999999999999999999999998875
Q ss_pred HHHHHHHHHHHHHcC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002443 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (921)
Q Consensus 157 a~~~~~lg~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (921)
..+++.+|.++...+ ...+|+..|++.++..|+...+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445677776643332 1356888899999998886432 1222211111
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHhhhhh
Q 002443 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTK 275 (921)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~lg~~ 275 (921)
...-..--+..|..|.+.|.+..|+.-++.+++..|+.+ ++...+..++..+|..
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111133345789999999999999999999999988754 5667777888877744
|
|
| >PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=106.96 Aligned_cols=156 Identities=14% Similarity=0.172 Sum_probs=120.1
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002443 655 LTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 655 ~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
..++.++++.+++. .|....+++++..+... .|+..|++.|.+ .....+....+..++. ++|.|.+..+ ..
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~ 84 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLK-ENIIFLGYVP-DD 84 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCG-TTEEEEESHS-HH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----cccccccccccccccc-cccccccccc-cc
Confidence 34566777777755 78899999999998876 899999999843 3556677888888987 8999999987 67
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcC
Q 002443 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 808 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~--~~~~~y~~~a~~l~~d 808 (921)
+....|+.+||++-|..+ ++|++.+|||++|+|||+-....+.. +-.-+...++. .|.++.++...++..|
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e------~~~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNE------IINDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHH------HSGTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCce------eeccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 899999999999999987 88999999999999999833222211 11123344443 4669999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002443 809 VTALANLRMSLRDL 822 (921)
Q Consensus 809 ~~~~~~~r~~~~~~ 822 (921)
++.+..|++..|++
T Consensus 159 ~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 159 PELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988764
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B .... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-09 Score=114.92 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=51.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002443 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (921)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (921)
.|..++..|++++|+.+|+++++++|++..++.++|.++..+|++++|+..+++++.++|+++.+++.+|.+|..+|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhcCCCChhhHh
Q 002443 420 LAIDAYEQCLKIDPDSRNAGQ 440 (921)
Q Consensus 420 ~A~~~~~~al~l~P~~~~a~~ 440 (921)
+|+..|+++++++|++..+..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 555555555555555444433
|
|
| >cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.9e-09 Score=116.43 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=116.3
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhH------cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcC
Q 002443 657 NGFITFGSFNN--LAKITPKVLQVWARILCA------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 728 (921)
Q Consensus 657 ~~~~~~~~~~~--~~K~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 728 (921)
++.+++++..+ ..|..+.+++++..+.+. .|+.+|+++|.| +.++.+++.+++.|++ +.+.|.|.++
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~~~~~~g~~~ 304 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKG----PLKEKYLERIKELKLK-KVTIRTPWLS 304 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecC----ccHHHHHHHHHHcCCC-cEEEEcCcCC
Confidence 44455666565 478889999999988753 478999999876 4578888899999996 5555656665
Q ss_pred CcHHHHHhcccccEEecCCC----CCCcccHHHHhhcCCcEEecCCCcccccch-h-HHHhhcCCcccccCCHHHHHHHH
Q 002443 729 LNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVG-V-SLLTKVGLKHLIAKNEDEYVQLA 802 (921)
Q Consensus 729 ~~~~~~~~~~~~Dv~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~-~-~~l~~~gl~~~i~~~~~~y~~~a 802 (921)
.++....|..+||++-+.+ ++.+++.+|||+||+|||+ ++++ . .++. -|-..++..|.+++.+..
T Consensus 305 -~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~-------s~~~~~~eiv~-~~~~G~lv~d~~~la~~i 375 (415)
T cd03816 305 -AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-------LDFKCIDELVK-HGENGLVFGDSEELAEQL 375 (415)
T ss_pred -HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEE-------eCCCCHHHHhc-CCCCEEEECCHHHHHHHH
Confidence 6888889999999984333 2357899999999999998 3333 1 1222 255556667999999999
Q ss_pred HHHhcC---HHHHHHHHHHHHHHh
Q 002443 803 LQLASD---VTALANLRMSLRDLM 823 (921)
Q Consensus 803 ~~l~~d---~~~~~~~r~~~~~~~ 823 (921)
..|.+| ++.+.+|++..|+..
T Consensus 376 ~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 376 IDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhh
Confidence 999999 899999988887764
|
The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik. |
| >PRK00654 glgA glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=117.14 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=117.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++++.+.++ .|..+.+++++.++++. +.+|+++|.+ .....+.+++..+++| +++.+..... .+....
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g--~~~~~~~l~~l~~~~~---~~v~~~~g~~-~~~~~~ 352 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTG--DPELEEAFRALAARYP---GKVGVQIGYD-EALAHR 352 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecC--cHHHHHHHHHHHHHCC---CcEEEEEeCC-HHHHHH
Confidence 56678888865 79999999999998864 7899998865 2345667777777775 4566533322 233346
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcc--------------cc--cCCHHHH
Q 002443 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH--------------LI--AKNEDEY 798 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~--------------~i--~~~~~~y 798 (921)
.|+.+|++|-|+-| +.|.+.+|||++|+|+|+ +++| |++| ++ ..|.+++
T Consensus 353 ~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-------~~~g-------G~~e~v~~~~~~~~~~~G~lv~~~d~~~l 418 (466)
T PRK00654 353 IYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-------RRTG-------GLADTVIDYNPEDGEATGFVFDDFNAEDL 418 (466)
T ss_pred HHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-------eCCC-------CccceeecCCCCCCCCceEEeCCCCHHHH
Confidence 78899999999988 778999999999999886 5555 4433 33 2477888
Q ss_pred HHHHHHHhc---CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002443 799 VQLALQLAS---DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 799 ~~~a~~l~~---d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 847 (921)
.+...++.. |++.+.+++.+. + ...|+++..+++++++|+.+..
T Consensus 419 a~~i~~~l~~~~~~~~~~~~~~~~---~--~~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 419 LRALRRALELYRQPPLWRALQRQA---M--AQDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH---h--ccCCChHHHHHHHHHHHHHHhh
Confidence 777766654 666555555433 2 2459999999999999998754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.1e-08 Score=97.91 Aligned_cols=175 Identities=23% Similarity=0.220 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHH
Q 002443 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (921)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (921)
.+..++..|..++..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 46789999999999999999999999999998875 5789999999999999999999999999999998764 3
Q ss_pred HHHHHHHHHHHH-----------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002443 158 IVLTDLGTSLKL-----------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (921)
Q Consensus 158 ~~~~~lg~~~~~-----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 226 (921)
.+++.+|.++.. .+...+|+..|+..++..|++..+ .+|...+..+-+ .-..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHH
Confidence 345555555443 333457788888888887776432 122222211111 1133
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHhhhhhh
Q 002443 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKV 276 (921)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~lg~~~ 276 (921)
--+.+|..|.+.|.+..|+..++.+++..|+.. .+...+..++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 446789999999999999999999999999875 45666777888887543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-08 Score=105.54 Aligned_cols=182 Identities=22% Similarity=0.282 Sum_probs=110.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (921)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 311 (921)
|..|...+++++|.++|.++.+...... .....+..+...+.++... ++++|+.+|++++ .+|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~--------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI--------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH--------------HHHH
Confidence 3444444555555555555443321100 1112233333333333333 6666666666654 3455
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcCCH
Q 002443 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPN--F----SQSLNNLGVVYTVQGKM 384 (921)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~ 384 (921)
..|++..|- ..+..+|.+|... |++++|+++|++|+++... . ..++..+|.++...|+|
T Consensus 106 ~~G~~~~aA--------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 106 EAGRFSQAA--------------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HCT-HHHHH--------------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred hcCcHHHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 566665553 3445567777777 8888888888888876321 1 34677889999999999
Q ss_pred HHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHH
Q 002443 385 DAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (921)
Q Consensus 385 ~~A~~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l 443 (921)
++|++.|++.....-++ ...++..+.++...|+...|...+++....+|.........+
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 99999999988753221 245667788999999999999999999999998766655443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=108.51 Aligned_cols=181 Identities=22% Similarity=0.254 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCHHHHH
Q 002443 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--Q----NACAHTHCGILYKDEGRLVEAA 136 (921)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~ 136 (921)
+|++|..+|+++ |.+|...+++++|.+.|.++....- + -...+...+.++.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566666666655 6667777888888888887765421 1 134555666666555 999999
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHH
Q 002443 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDT 209 (921)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~ 209 (921)
.+|++++.+.-.... ....+.++..+|.+|... |++++|+++|+++++.... ....+..+|.++...|+|++
T Consensus 95 ~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999987543332 233578899999999998 9999999999999987322 14567889999999999999
Q ss_pred HHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH
Q 002443 210 ALGCYEKAALERPM-------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (921)
Q Consensus 210 A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (921)
|++.|+++....-+ ....++..+.+++..|+...|...+++....+|.+.
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 99999999875322 123556778899999999999999999999988654
|
|
| >PRK14098 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=116.25 Aligned_cols=170 Identities=14% Similarity=0.038 Sum_probs=121.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002443 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
++.++|+++.++ .|..+.+++++.+++. ++.+|+++|.+ ....++.|++..+++ ++||.|.+..+ ..+..
T Consensus 305 ~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~---~~~V~~~g~~~-~~~~~ 376 (489)
T PRK14098 305 EETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSG--DKEYEKRFQDFAEEH---PEQVSVQTEFT-DAFFH 376 (489)
T ss_pred cCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCC--CHHHHHHHHHHHHHC---CCCEEEEEecC-HHHHH
Confidence 356678888866 7999999999999886 47999999865 233567787777776 37999998865 45566
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhH--HHhh---cCCcccc--cCCHHHHHHHHHH--
Q 002443 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTK---VGLKHLI--AKNEDEYVQLALQ-- 804 (921)
Q Consensus 735 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~--~l~~---~gl~~~i--~~~~~~y~~~a~~-- 804 (921)
..|+.+|++|-|+-+ +.|.+.+|||++|+|+|+ +++|+- ++.. -|-..++ ..|.+++.+...+
T Consensus 377 ~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv-------~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 377 LAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVA-------YAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred HHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEE-------ecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 788999999998877 779999999999987665 333310 0000 0122333 2467777666544
Q ss_pred -HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002443 805 -LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 805 -l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 846 (921)
+.+|++.+.+++.+ .+ ...|+++..+++++++|+++.
T Consensus 450 ~~~~~~~~~~~~~~~---~~--~~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 450 ALYHDEERWEELVLE---AM--ERDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HHHcCHHHHHHHHHH---Hh--cCCCChHHHHHHHHHHHHHHh
Confidence 55788766666542 33 246999999999999999875
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=94.06 Aligned_cols=197 Identities=17% Similarity=0.117 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (921)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (921)
.+..++..|..|-..|-+.-|...|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|+..++++|.+..+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 46678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002443 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (921)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 315 (921)
+--|++.-|.+-+.+..+.+|+++--... .|.. ...-+..+|...+.+-.+...+....++... ..+|+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW---LYl~-----E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgk 212 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLW---LYLN-----EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGK 212 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHH---HHHH-----HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhh
Confidence 99999999999999999999998732211 1211 1233666766554433332222111222111 12222
Q ss_pred hHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002443 316 FDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (921)
Q Consensus 316 ~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (921)
..+ ...++++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 211 12233333322222 4566677777777777777777777666543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-05 Score=91.02 Aligned_cols=99 Identities=24% Similarity=0.242 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (921)
..+.-..-....+++.+|++...+.+++.|+...+....|..+.++|+.++|..+++..-...+++...+-.+-.+|..+
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH
Confidence 33444555677899999999999999999999999999999999999999999888877777888888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 002443 130 GRLVEAAESYHKALSADPS 148 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~ 148 (921)
+++++|..+|++++..+|+
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS 109 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc
Confidence 9999999999999999998
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=92.19 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 002443 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 408 (921)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~l 408 (921)
..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+.+|++++..+|++ ..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 466777778888888888888888888777765 4577778888888888888888888888877764 5678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002443 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
|.++..+|++++|+.+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888776544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-08 Score=111.71 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=107.8
Q ss_pred EEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-HHHHHHHHHcCCCC------------CCEEEccCcC
Q 002443 662 FGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRFLSTLEQLGLES------------LRVDLLPLIL 728 (921)
Q Consensus 662 ~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~-~~~~~~~~~~gi~~------------~rv~~~~~~~ 728 (921)
+.+..+..|-...++++|.++++..|+.+|+|+|.+ +.+ ..+.+.+++.|+.. .+|.+.+.
T Consensus 236 il~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~-- 309 (425)
T PRK05749 236 WIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRH----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT-- 309 (425)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCC----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec--
Confidence 333445566667789999999988999999999865 344 67888889999851 12333222
Q ss_pred CcHHHHHhcccccEE-ec-CCCCCCcccHHHHhhcCCcEEecCCCcccccchh--HHHhhcCCcccccCCHHHHHHHHHH
Q 002443 729 LNHDHMQAYSLMDIS-LD-TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAKNEDEYVQLALQ 804 (921)
Q Consensus 729 ~~~~~~~~~~~~Dv~-Ld-~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~i~~~~~~y~~~a~~ 804 (921)
..+....|+.+||+ +- |+.-+||.+.+|||++|+|||+-+- . +.++. ..+...|. -+...|.+++.+....
T Consensus 310 -~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~--~-~~~~e~~~~~~~~g~-~~~~~d~~~La~~l~~ 384 (425)
T PRK05749 310 -MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPH--T-FNFKEIFERLLQAGA-AIQVEDAEDLAKAVTY 384 (425)
T ss_pred -HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCC--c-cCHHHHHHHHHHCCC-eEEECCHHHHHHHHHH
Confidence 35778889999995 43 3334788899999999999997221 1 11111 12222231 1125799999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcC
Q 002443 805 LASDVTALANLRMSLRDLMSKS 826 (921)
Q Consensus 805 l~~d~~~~~~~r~~~~~~~~~~ 826 (921)
|.+|++.+.+++++.++.+...
T Consensus 385 ll~~~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 385 LLTDPDARQAYGEAGVAFLKQN 406 (425)
T ss_pred HhcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998876543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.1e-06 Score=85.29 Aligned_cols=296 Identities=20% Similarity=0.124 Sum_probs=186.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 002443 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVV 200 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 200 (921)
-|.+....|+-..|.+.-.+.-++-..+.+.. +...-++.....|+++.|.+.|+.++. +|.. .-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepL-----IhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPL-----IHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHH-----HHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 35566677888999998888876655554442 233345556678999999999998875 3332 1122223333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHhhhhhhhhc
Q 002443 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLE 279 (921)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~lg~~~~~~ 279 (921)
....|..+.|..+-+.+....|.-+.++...-...+..|+++.|+++.+......--.. .+....+.++...+.. ...
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-Hhc
Confidence 45689999999999999999999998888888889999999999999877654321111 1111222222221111 112
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
.+...|...-.++.++.|+....-..-+..+++.|+..++-.+++.+.+..|.- . ++.+|....--+.++.-+++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHH
Confidence 356667777777777777777666667777777777777777777777766642 1 22333333333333333333
Q ss_pred H---HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhh
Q 002443 360 A---LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLK 430 (921)
Q Consensus 360 a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 430 (921)
+ ..+.|++.+.....+..-+.-|++..|..--+.+....|. ..++..|+.+-... |+-.++..++-++++
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3 3346666666666676666777777776666666666665 44555566665544 666666666666654
|
|
| >TIGR02095 glgA glycogen/starch synthases, ADP-glucose type | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-08 Score=115.07 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=119.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++++++.++ .|..+.+++++.++.+. +.+|+++|.+. +...+.+.+...+.+ +++.|.+... .+....
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~--~~~~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~ 361 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGD--PELEEALRELAERYP---GNVRVIIGYD-EALAHL 361 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCC--HHHHHHHHHHHHHCC---CcEEEEEcCC-HHHHHH
Confidence 56778888866 89999999999998864 58999988652 345566666665553 5788877654 345556
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHHH
Q 002443 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDEY 798 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i----------------~~~~~~y 798 (921)
.|+.+|++|-|+-+ +.|.+.+|||++|+|||+ +++| |++|.| ..|.+++
T Consensus 362 ~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------s~~g-------g~~e~v~~~~~~~~~~~G~l~~~~d~~~l 427 (473)
T TIGR02095 362 IYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-------RRTG-------GLADTVVDGDPEAESGTGFLFEEYDPGAL 427 (473)
T ss_pred HHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-------ccCC-------CccceEecCCCCCCCCceEEeCCCCHHHH
Confidence 78899999999987 678999999999999997 5555 444333 2477888
Q ss_pred HHHHHHHhc----CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 799 VQLALQLAS----DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 799 ~~~a~~l~~----d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
.+...++.. |++.+.+++++.. ...|+++..+++++++|++
T Consensus 428 a~~i~~~l~~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 428 LAALSRALRLYRQDPSLWEALQKNAM-----SQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----ccCCCcHHHHHHHHHHHHh
Confidence 777666665 8877777765442 2459999999999999975
|
This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. |
| >PRK14099 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.8e-08 Score=112.25 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=118.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCE-EEccCcCCcHHHH
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRV-DLLPLILLNHDHM 734 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv-~~~~~~~~~~~~~ 734 (921)
+.++||+..|+ .|..+.++++..++++ ++.+|+++|.+ .+..++.+++..++++ +++ .|+|. .++..
T Consensus 294 ~~~li~~VgRL~~~KG~d~Li~A~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~~---~~v~~~~G~---~~~l~ 363 (485)
T PRK14099 294 DALLLGVISRLSWQKGLDLLLEALPTLLG--EGAQLALLGSG--DAELEARFRAAAQAYP---GQIGVVIGY---DEALA 363 (485)
T ss_pred CCcEEEEEecCCccccHHHHHHHHHHHHh--cCcEEEEEecC--CHHHHHHHHHHHHHCC---CCEEEEeCC---CHHHH
Confidence 46778888865 7999999999998876 36899998865 3345677777766653 565 67776 34555
Q ss_pred Hhc-ccccEEecCCCC-CCcccHHHHhhcCC-cEEecCCCcccccch--hHHHhhcC-Ccccc--cCCHHHHHHHHHH--
Q 002443 735 QAY-SLMDISLDTFPY-AGTTTTCESLYMGV-PCVTMAGSVHAHNVG--VSLLTKVG-LKHLI--AKNEDEYVQLALQ-- 804 (921)
Q Consensus 735 ~~~-~~~Dv~Ld~~~~-~g~~t~~eal~~Gv-Pvvt~~g~~~~~r~~--~~~l~~~g-l~~~i--~~~~~~y~~~a~~-- 804 (921)
..| ..+|++|-|+-| +.|.+.+|||++|+ ||||-.|..- .-+. .......| -..++ ..|.+++.+...+
T Consensus 364 ~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 364 HLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred HHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHHHHHHH
Confidence 555 569999999877 77999999999995 5554322210 0000 00000001 12333 2477787776654
Q ss_pred -HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002443 805 -LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 805 -l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 847 (921)
+.+|++.+.+++++.+ ...|+++..+++++++|+++..
T Consensus 443 ~l~~d~~~~~~l~~~~~-----~~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 443 ALFADPVAWRRLQRNGM-----TTDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred HHhcCHHHHHHHHHHhh-----hhcCChHHHHHHHHHHHHHHHh
Confidence 7889988877776553 2459999999999999999875
|
|
| >cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-08 Score=110.90 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=103.1
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcc
Q 002443 659 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 738 (921)
Q Consensus 659 ~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 738 (921)
.++|..--...|..+.+++++.+ .| .+|+++|.+ ...+.+.+ +.. ++|.|+|.++ .++....|.
T Consensus 197 ~il~~G~~~~~K~~~~li~a~~~----~~-~~l~ivG~g----~~~~~l~~-----~~~-~~V~~~g~~~-~~~~~~~~~ 260 (351)
T cd03804 197 YYLSVGRLVPYKRIDLAIEAFNK----LG-KRLVVIGDG----PELDRLRA-----KAG-PNVTFLGRVS-DEELRDLYA 260 (351)
T ss_pred EEEEEEcCccccChHHHHHHHHH----CC-CcEEEEECC----hhHHHHHh-----hcC-CCEEEecCCC-HHHHHHHHH
Confidence 34444433457888888887765 45 789888865 33344443 444 8999999987 578889999
Q ss_pred cccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHH
Q 002443 739 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLR 816 (921)
Q Consensus 739 ~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i--~~~~~~y~~~a~~l~~d~~~~~~~r 816 (921)
.+|+++-|...+.|.+.+|||+||+|||+........ ++.. |-..++ ..|.+++.+....+.+|++ .++
T Consensus 261 ~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e-----~i~~-~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~ 331 (351)
T cd03804 261 RARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALE-----TVID-GVTGILFEEQTVESLAAAVERFEKNED---FDP 331 (351)
T ss_pred hCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcc-----eeeC-CCCEEEeCCCCHHHHHHHHHHHHhCcc---cCH
Confidence 9999998877778999999999999999843211111 1111 222333 3578899999999999984 334
Q ss_pred HHHHHHhhcCCCCChHHHHHHH
Q 002443 817 MSLRDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~ 838 (921)
+.++++. ..|+.+.|.+++
T Consensus 332 ~~~~~~~---~~~~~~~~~~~~ 350 (351)
T cd03804 332 QAIRAHA---ERFSESRFREKI 350 (351)
T ss_pred HHHHHHH---HhcCHHHHHHHh
Confidence 4444442 237888887765
|
wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-08 Score=90.23 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (921)
++.++..|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5678999999999999999999999999998876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002443 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
+|.++...|++++|+..++++++..|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999987654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-05 Score=82.55 Aligned_cols=387 Identities=13% Similarity=0.073 Sum_probs=243.0
Q ss_pred chHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhC---CCC--
Q 002443 47 EGKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLD---PQN-- 115 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~-- 115 (921)
-.+.++.+|+.+...| +..+++++++..+...|.+ +.....+|..++ ...+.+.|...++++..+. |+.
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd 85 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD 85 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh
Confidence 3567888899988888 8999999999988877654 345666776654 6788899999999987663 222
Q ss_pred --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------
Q 002443 116 --ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------ 186 (921)
Q Consensus 116 --~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 186 (921)
..+...++.+|.... .+..|...+++++++..+.+.. -...++.++.......++..|++.+.-..+.
T Consensus 86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~ 162 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICF 162 (629)
T ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhh
Confidence 346677888888777 7888999999999987776532 2345677777777777877777664211100
Q ss_pred -----------------CCC-----------------------C----HHHHHHHHHH-HHHcCCHHHHHHHHHHH---H
Q 002443 187 -----------------DPH-----------------------Y----APAYYNLGVV-YSELMQYDTALGCYEKA---A 218 (921)
Q Consensus 187 -----------------~p~-----------------------~----~~~~~~la~~-~~~~g~~~~A~~~~~~a---l 218 (921)
.++ . -..|..+-.+ |...|+...+...+++. +
T Consensus 163 ~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~si 242 (629)
T KOG2300|consen 163 PYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSI 242 (629)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHH
Confidence 011 0 0111222222 23345555554444433 2
Q ss_pred Hh-CCC------------CH-----------HHHHHHHHH--HHHCCCHHHHHHHHHHHHHhCCChH-------HHHHHH
Q 002443 219 LE-RPM------------YA-----------EAYCNMGVI--YKNRGDLESAIACYERCLAVSPNFE-------IAKNNM 265 (921)
Q Consensus 219 ~~-~p~------------~~-----------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l 265 (921)
+. .+. .+ .++..+-.+ -.-.|-+++|.++-++++....+.. ......
T Consensus 243 qtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~k 322 (629)
T KOG2300|consen 243 QTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFK 322 (629)
T ss_pred hccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 11 110 00 011111111 1234667777777777765532211 111111
Q ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-C-
Q 002443 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYN---WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C- 333 (921)
Q Consensus 266 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 333 (921)
...+..+.....-.|++.+|++....+.+.. |. .+.+.+.+|......+.++.|...|..+.+.... +
T Consensus 323 m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl 402 (629)
T KOG2300|consen 323 MILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL 402 (629)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH
Confidence 2233334444455788888888877776553 32 2456777888888888999999999888876433 2
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Q 002443 334 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y 401 (921)
Q Consensus 334 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~ 401 (921)
+....++|..|.+.++-+.-.+.++ .+.|.+ ..+++..|...+.++++.||...+.+.++.... +
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed 479 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED 479 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence 3455678889988776554433333 334432 236677788888899999999999998887521 1
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002443 402 -----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 402 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
+-.+..|+.+....|+..++.+..+-++++....++..
T Consensus 480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 33566788888889999999998888887765554443
|
|
| >PRK13609 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-08 Score=109.34 Aligned_cols=265 Identities=11% Similarity=0.093 Sum_probs=146.0
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcCC--CceEEee---ccCCCCCCCCCccEEEecCCCCCCCc--ccCccc
Q 002443 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVTW---IGYPNTTGLPTIDYRITDSLADPPET--KQKHVE 628 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~--ApvQ~~~---~G~p~ttG~~~~Dy~i~d~~~~p~~~--~~~~~e 628 (921)
..+.+.|++.++||+|-..+.. +-..+.+.+- -|+= ++ .|.+...-.+.+|.+++-.--.-... ...-.|
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~-~~~td~~~~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~ 170 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTY-NVLTDFCLHKIWVHREVDRYFVATDHVKKVLVDIGVPPE 170 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeE-EEeCCCCCCcccccCCCCEEEECCHHHHHHHHHcCCChh
Confidence 5677889999999999532221 1111222222 3432 22 23333333456777765310000000 011224
Q ss_pred ceEEcCCCcc-ccCCCCCCCCCCCCCCCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 002443 629 ELIRLPECFL-CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 704 (921)
Q Consensus 629 ~~~~lp~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~ 704 (921)
++...+.... .|.+.......+...++++ ..+++....+. .|.-..+++.+ ...|+.++++++++ .+..+
T Consensus 171 ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l----~~~~~~~~viv~G~--~~~~~ 244 (380)
T PRK13609 171 QVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSL----MSVPDLQVVVVCGK--NEALK 244 (380)
T ss_pred HEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHH----hhCCCcEEEEEeCC--CHHHH
Confidence 5554432110 1111111001112234443 33333332332 34444444443 34588888877542 23466
Q ss_pred HHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC-CCcccccchhHHHh
Q 002443 705 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLT 783 (921)
Q Consensus 705 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~ 783 (921)
+.+++.....+ ++|.|+|.+. +....|..+|+++- -+||.|.+|||++|+|||+.. .... ....+.++.
T Consensus 245 ~~l~~~~~~~~---~~v~~~g~~~---~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~-~~~n~~~~~ 314 (380)
T PRK13609 245 QSLEDLQETNP---DALKVFGYVE---NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQ-EKENAMYFE 314 (380)
T ss_pred HHHHHHHhcCC---CcEEEEechh---hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCc-chHHHHHHH
Confidence 77777666655 6899999865 33455666999983 357889999999999999842 1111 111223444
Q ss_pred hcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 784 KVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 784 ~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
..|.. ++..|.++..+...+|.+|++.++++++..++.. .-++.+.+++.+++.+.
T Consensus 315 ~~G~~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 315 RKGAA-VVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLY---LPEPADHIVDDILAENH 370 (380)
T ss_pred hCCcE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhh
Confidence 44543 3468999999999999999999999998887642 22577888877776653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-08 Score=99.68 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002443 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIE 392 (921)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~ 392 (921)
.+..+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566667777788889999999999999999999999999999999999999999998888877643 4678889999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002443 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
+++..+|++..+.+.||..++..|++.+|+..++..++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999998887643
|
|
| >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-08 Score=110.49 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=123.3
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002443 655 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 655 ~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
...+.++|+.+.+. .|..+.+++++.++... |+.+|++.|.+ .....+.+.....++ ++|.|.|.++ .++
T Consensus 216 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~----~~~~~~~~~~~~~~~--~~v~~~g~~~-~~~ 287 (394)
T cd03794 216 GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDG----PEKEELKELAKALGL--DNVTFLGRVP-KEE 287 (394)
T ss_pred CCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCc----ccHHHHHHHHHHcCC--CcEEEeCCCC-hHH
Confidence 34556667777755 78889999999999887 89999999865 234455555555565 5799999766 678
Q ss_pred HHHhcccccEEecCCCCCC------cccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc-CCHHHHHHHHHHH
Q 002443 733 HMQAYSLMDISLDTFPYAG------TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-KNEDEYVQLALQL 805 (921)
Q Consensus 733 ~~~~~~~~Dv~Ld~~~~~g------~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~-~~~~~y~~~a~~l 805 (921)
....|..+|+++-|....+ +++.+|||++|+|||+-....... ++...+..-++. .|.+++++...++
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~-----~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE-----LVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh-----hhccCCcceEeCCCCHHHHHHHHHHH
Confidence 8899999999998886643 445899999999999854332222 111112222333 3899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002443 806 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 806 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 838 (921)
..|++.+..+++..++...+ .|+++.++..+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~ 393 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEE--KFSREKLAERL 393 (394)
T ss_pred HhChHHHHHHHHHHHHHHHH--hhcHHHHHHhc
Confidence 99999999999988877642 37888877664
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. |
| >PLN02605 monogalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-07 Score=106.58 Aligned_cols=264 Identities=12% Similarity=0.081 Sum_probs=149.2
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchh--hhh-c-----CCCceEEeecc-C---CCCCCCCCccEEEecCCCCCCCcc
Q 002443 556 KKVAAMVREDKIDILVELTGHTANNKLG--MMA-C-----QPAPVQVTWIG-Y---PNTTGLPTIDYRITDSLADPPETK 623 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~--~~a-~-----r~ApvQ~~~~G-~---p~ttG~~~~Dy~i~d~~~~p~~~~ 623 (921)
..+.+.|++.++||+|-. |.-.++.. ++. + ...|+= +.+. + ....-.+.+|++++-.-.......
T Consensus 90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~-~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~ 166 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFT-TVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRAL 166 (382)
T ss_pred HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEE-EEECCCCCcCcccccCCCCEEEECCHHHHHHHH
Confidence 467889999999999973 44333322 222 1 245653 2221 1 112335678888852211000101
Q ss_pred --cCcccceEEcCCCc-cccCCCC-CCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHh----HcCCcEEE-
Q 002443 624 --QKHVEELIRLPECF-LCYTPSP-EAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILC----AVPNSRLV- 692 (921)
Q Consensus 624 --~~~~e~~~~lp~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~----~~p~~~l~- 692 (921)
..-.+++...|..- -.|.++. .....+...+++++..+++.+.+. .|....+++.+..++. ..|+.+++
T Consensus 167 ~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~v 246 (382)
T PLN02605 167 KRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVV 246 (382)
T ss_pred HcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEE
Confidence 11125565554221 0121111 111112234566666666666643 6777788888776552 13666544
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCc
Q 002443 693 VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV 772 (921)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~ 772 (921)
+.|.+ +..++.+.+ .... .+|.|+|.+.. ....|..+|+++-+ +||.|++|||++|+|||+..--.
T Consensus 247 i~G~~---~~~~~~L~~----~~~~-~~v~~~G~~~~---~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~p 312 (382)
T PLN02605 247 ICGRN---KKLQSKLES----RDWK-IPVKVRGFVTN---MEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIP 312 (382)
T ss_pred EECCC---HHHHHHHHh----hccc-CCeEEEecccc---HHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCC
Confidence 44433 233444443 3322 57999998753 44555669999953 47789999999999999854111
Q ss_pred ccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002443 773 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 773 ~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 840 (921)
......+-.+...|..- +..|.++..+...+|..| ++.+++|++..++... -.....++..+.+
T Consensus 313 gqe~gn~~~i~~~g~g~-~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~---~~a~~~i~~~l~~ 377 (382)
T PLN02605 313 GQEEGNVPYVVDNGFGA-FSESPKEIARIVAEWFGDKSDELEAMSENALKLAR---PEAVFDIVHDLHE 377 (382)
T ss_pred ccchhhHHHHHhCCcee-ecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CchHHHHHHHHHH
Confidence 11112334444456543 458999999999999988 9999999998887632 2244555655543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.9e-08 Score=95.74 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=102.4
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHH
Q 002443 59 RSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLV 133 (921)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 133 (921)
+-.+.|..+...+.+.++..+.+ ..+++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 44555777777777766665554 5678999999999999999999999999887653 458999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002443 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (921)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (921)
+|+..+++++.+.|.....+..++.++..+|..+...|++++|+..+.+
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999999999999999988888888888888888888887765554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8e-06 Score=84.02 Aligned_cols=228 Identities=32% Similarity=0.454 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCH
Q 002443 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQY 207 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~ 207 (921)
+.+..+...+...+...+.. .........+..+...+.+..+...+...+. ..+.....+...+..+...+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 37 GELAEALELLEEALELLPNS-----DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc-----cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence 44444445555554444432 0011234444555555666666666666554 4555566666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHH
Q 002443 208 DTALGCYEKAALERPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
..++..+.+++...+.........+. ++...|++++|...+++++...+. ..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~----------------------- 164 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE----LN----------------------- 164 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cc-----------------------
Confidence 66666666666655554344444444 566666666666666666554432 00
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002443 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
.....+...+..+...+++++|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|
T Consensus 165 -----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 165 -----------ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred -----------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 11122222222234444444444444444444444 344555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002443 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
.....+..++..+...+.++++...+.+++...|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 44444444555444444555555555555555554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-06 Score=103.83 Aligned_cols=222 Identities=16% Similarity=0.127 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHH
Q 002443 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (921)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~ 287 (921)
+..+-|++.+..+|+..-.|..+-....+.++.++|.+..++||. +++...+-..++-.+|.++-..| |.-+...+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~k 1518 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKK 1518 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHH
Confidence 345567777777888877787777777888888888888888875 34555555555556666655444 34555666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Q 002443 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN- 366 (921)
Q Consensus 288 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 366 (921)
.|++|.+... -..++..|..+|...+++++|.++|+..++...+....|..++..++++++-++|...+.+|++.-|.
T Consensus 1519 VFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 6777765542 24567778888888888888888888888887777888888888888888888888888888888776
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 367 -FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 367 -~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+.+.....|.+-++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+.+...|++++.+.=.
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 67788888888888888888888888888888888888888888888888888888888888876543
|
|
| >PHA01633 putative glycosyl transferase group 1 | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.5e-08 Score=104.53 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=75.9
Q ss_pred CeEEEecCC--CCcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEcc---CcCC
Q 002443 659 FITFGSFNN--LAKITPKVLQVWARILCAVPN----SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP---LILL 729 (921)
Q Consensus 659 ~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~---~~~~ 729 (921)
.++|+++.+ ..|..+.++++|.++.++.|+ .+|++.|. ..+.++++. ++|.|.+ .++
T Consensus 148 ~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~------------~~~~~l~l~-~~V~f~g~~G~~~- 213 (335)
T PHA01633 148 TIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH------------KQFTQLEVP-ANVHFVAEFGHNS- 213 (335)
T ss_pred CeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH------------HHHHHcCCC-CcEEEEecCCCCC-
Confidence 356777776 489999999999999988886 46776642 123556775 8999985 433
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEec
Q 002443 730 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 768 (921)
Q Consensus 730 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~ 768 (921)
.++....|..+|++|-|+-+ +.|.+.+|||+||+|||+-
T Consensus 214 ~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas 253 (335)
T PHA01633 214 REYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQ 253 (335)
T ss_pred HHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEc
Confidence 46788899999999998866 7799999999999999983
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-08 Score=86.08 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777788888888888888777777777778888888888888888888888888777777788888888888
Q ss_pred CCHHHHHHHHHHHhhcCCC
Q 002443 416 GSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 416 g~~~~A~~~~~~al~l~P~ 434 (921)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888777663
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=83.65 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCC
Q 002443 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 433 (921)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~P 433 (921)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.+|..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566677777777777777777777777777777777777777777777 57777777777777666
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-06 Score=85.55 Aligned_cols=224 Identities=31% Similarity=0.410 Sum_probs=177.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHhhhhhhhhc
Q 002443 204 LMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLE 279 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~lg~~~~~~ 279 (921)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHH
Confidence 45566666666666666655 356677777777777777777777777765 333333 2333444444445
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 002443 280 GDINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVE 355 (921)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~ 355 (921)
+++.+++..+.+++...+.........+. ++...+++++|...+++++...| .....+...+..+...+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 56777888888877766665555555555 89999999999999999988776 456677777777889999999999
Q ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 356 CYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 356 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
.+.+++...+. ....+..++..+...+++++|...+..++...|.....+..++..+...++++++...+.++++..|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999 79999999999999999999999999999999997888888888888888899999999999999998
|
|
| >PRK13608 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=106.80 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=112.0
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC
Q 002443 669 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 748 (921)
Q Consensus 669 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 748 (921)
.|....+++.+ ++..|+.+++++++. .+..++.+.+.+ +.. ++|.|.|.+. +....|..+|+++-.
T Consensus 215 ~k~~~~li~~~---~~~~~~~~~vvv~G~--~~~l~~~l~~~~---~~~-~~v~~~G~~~---~~~~~~~~aDl~I~k-- 280 (391)
T PRK13608 215 SKGFDTMITDI---LAKSANAQVVMICGK--SKELKRSLTAKF---KSN-ENVLILGYTK---HMNEWMASSQLMITK-- 280 (391)
T ss_pred chhHHHHHHHH---HhcCCCceEEEEcCC--CHHHHHHHHHHh---ccC-CCeEEEeccc---hHHHHHHhhhEEEeC--
Confidence 36555666654 445578888776543 123445555433 333 5899999864 445556669999842
Q ss_pred CCCcccHHHHhhcCCcEEecC-CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCC
Q 002443 749 YAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSP 827 (921)
Q Consensus 749 ~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~ 827 (921)
+||.|+.|||++|+|||+.. ... .....+-++...|.. +++.|.++.++...+|.+|++.+.++++..++.. .
T Consensus 281 -~gg~tl~EA~a~G~PvI~~~~~pg-qe~~N~~~~~~~G~g-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~ 354 (391)
T PRK13608 281 -PGGITISEGLARCIPMIFLNPAPG-QELENALYFEEKGFG-KIADTPEEAIKIVASLTNGNEQLTNMISTMEQDK---I 354 (391)
T ss_pred -CchHHHHHHHHhCCCEEECCCCCC-cchhHHHHHHhCCcE-EEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhc---C
Confidence 57889999999999999863 221 234455666676775 4467999999999999999999999999998763 3
Q ss_pred CCChHHHHHHHHHHHHHHHHH
Q 002443 828 VCDGQNFALGLESTYRNMWHR 848 (921)
Q Consensus 828 ~~~~~~~~~~~e~~~~~~~~~ 848 (921)
-++....+..+++.+..+-++
T Consensus 355 ~~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 355 KYATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred CCCHHHHHHHHHHHhhhhhhh
Confidence 378889999998887655443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.8e-08 Score=94.73 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (921)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 410 (921)
...++.+|.++...|++++|+..|++++.+.++. +.++.++|.++...|++++|+.++++++.++|.....+.++|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3344555555555555555555555555544331 2345555555555555555555555555555555555555555
Q ss_pred HHH-------HcCCHH-------HHHHHHHHHhhcCCCChhh
Q 002443 411 LYR-------DAGSIS-------LAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 411 ~~~-------~~g~~~-------~A~~~~~~al~l~P~~~~a 438 (921)
++. .+|+++ +|+.+|++++..+|++...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 554 445544 6666777778888876543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-07 Score=87.43 Aligned_cols=198 Identities=17% Similarity=0.125 Sum_probs=147.8
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (921)
..+..+++.|..|-..|-..-|..-|.+++.+.|+.++++..+|..+...|+++.|.+.|+..++++|....+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002443 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (921)
++--|++.-|.+.+.+..+.+|+++--.. +..+ -...-+..+|...+.+-.+...+.-..|+..+.. +|
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L-----WLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---Lg 211 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSL-----WLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LG 211 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHH-----HHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---Hh
Confidence 99999999999999999999999874311 1111 1233466777766544333332222233322222 22
Q ss_pred CHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 002443 206 QYDTALGCYEKAALERPM-------YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (921)
Q Consensus 206 ~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (921)
+..+ ...++++.....+ -.++++.+|..+...|+.++|...|+-++..+
T Consensus 212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2211 1233333332222 25689999999999999999999999988654
|
|
| >PHA01630 putative group 1 glycosyl transferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=6e-08 Score=105.60 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=105.3
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecC
Q 002443 667 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 746 (921)
Q Consensus 667 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~ 746 (921)
...|..+.++++|..+.+..|+.+|+++|.+.. ..++ .++. . +.+.++ .++....|..|||++-|
T Consensus 152 ~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~----~~~l------~~~~-~---~~~~v~-~~~l~~~y~~aDv~v~p 216 (331)
T PHA01630 152 WDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML----DPRL------FGLN-G---VKTPLP-DDDIYSLFAGCDILFYP 216 (331)
T ss_pred cccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc----chhh------cccc-c---eeccCC-HHHHHHHHHhCCEEEEC
Confidence 358999999999999998889999999985421 1111 1332 1 223344 47888889999999998
Q ss_pred CCC-CCcccHHHHhhcCCcEEecCCCcccccchh--HHHhh--------------------cCCcccccCCHHHHHHHHH
Q 002443 747 FPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK--------------------VGLKHLIAKNEDEYVQLAL 803 (921)
Q Consensus 747 ~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~--------------------~gl~~~i~~~~~~y~~~a~ 803 (921)
+-+ +.|.+.+|||++|+|||+ +++|+ .++.. -+..-++..|.++..+.++
T Consensus 217 S~~E~fgl~~lEAMA~G~PVIa-------s~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii 289 (331)
T PHA01630 217 VRGGAFEIPVIEALALGLDVVV-------TEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLL 289 (331)
T ss_pred CccccCChHHHHHHHcCCCEEE-------eCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHH
Confidence 877 669999999999999998 44441 01110 0112233457788888888
Q ss_pred HHhcCH---HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 804 QLASDV---TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 804 ~l~~d~---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
++..|+ +.++.++...+.. ..-|+++..+.+++++|++
T Consensus 290 ~~l~~~~~~~~~~~~~~~~~~~---~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 290 EALANWTPEKKKENLEGRAILY---RENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHhCCCHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhc
Confidence 888873 4444444443332 3449999999999999964
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=96.85 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 002443 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECY 357 (921)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 357 (921)
..++.+.-++..+..+|++.+-|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 56777888889999999999999999999999999999999999999999999999999999988654 578999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002443 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (921)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 402 (921)
+++++.+|.+..+.+.||..+++.|+|.+|...++..+...|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999987653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.9e-08 Score=93.88 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002443 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374 (921)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 374 (921)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.+++++++..|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345577888888888888888888888888776553 46788888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002443 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 375 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
|.++...|+...+...+++++. .+++|++++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 8888888887777766665543 26788899999999998873
|
|
| >PRK10125 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-08 Score=108.75 Aligned_cols=147 Identities=14% Similarity=0.080 Sum_probs=102.2
Q ss_pred CCeEEEecCC----CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHH
Q 002443 658 GFITFGSFNN----LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 733 (921)
Q Consensus 658 ~~~~~~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 733 (921)
+..+++.+.+ ..|..+.+++++..+ .++.+|+++|.+.. .. .++|.+.|...+..+.
T Consensus 240 ~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~----~~------------~~~v~~~g~~~~~~~l 300 (405)
T PRK10125 240 GKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSP----FT------------AGNVVNHGFETDKRKL 300 (405)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCc----cc------------ccceEEecCcCCHHHH
Confidence 3334555554 236667788877764 36789999986411 00 2568888877666788
Q ss_pred HHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc---------CCHHHHHHHHH
Q 002443 734 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---------KNEDEYVQLAL 803 (921)
Q Consensus 734 ~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~---------~~~~~y~~~a~ 803 (921)
...|+.+|||+-|+-+ +.++|.+|||+||+|||+ +++| |++|+|. .|.++..+
T Consensus 301 ~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVa-------t~~g-------G~~Eiv~~~~G~lv~~~d~~~La~--- 363 (405)
T PRK10125 301 MSALNQMDALVFSSRVDNYPLILCEALSIGVPVIA-------THSD-------AAREVLQKSGGKTVSEEEVLQLAQ--- 363 (405)
T ss_pred HHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEE-------eCCC-------ChHHhEeCCcEEEECCCCHHHHHh---
Confidence 9999999999988877 889999999999999998 8888 6665552 35555544
Q ss_pred HHhcCHHHHHH-H---HHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 804 QLASDVTALAN-L---RMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 804 ~l~~d~~~~~~-~---r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
+.|++.+.+ + ....|++.. ..|+.+.+++++++.|++
T Consensus 364 --~~~~~~~~~~~~~~~~~~r~~~~--~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 364 --LSKPEIAQAVFGTTLAEFSQRSR--AAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred --ccCHHHHHHhhhhHHHHHHHHHH--HhCCHHHHHHHHHHHHHh
Confidence 245544433 2 233444443 349999999999999975
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-09 Score=107.84 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (921)
.+-..|+.|+++|+|++|+.+|.+.+..+|.++..+.+.+.+|+++..+..|...+..++.++.....+|...+.....+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChHhHHHH
Q 002443 130 GRLVEAAESYHKALSADPSYKPAAECL 156 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (921)
|+..+|.+.++.++++.|++.+....+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 999999999999999999977654433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-06 Score=103.11 Aligned_cols=232 Identities=10% Similarity=0.033 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHCCCHHHHHHH
Q 002443 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMY----AEAYCNMGVIYKNRGDLESAIAC 247 (921)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 247 (921)
-.+..+-|++.+..+|+....|..+.....+.++.++|.+..++|+.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788888899999999999999999999999999999999874 3322 33454444555555777788889
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002443 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (921)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (921)
|++|.+..... .++..|..+|...+++++|.++++..++...+...+|..++..++.+++-++|...+++|+
T Consensus 1520 FeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1520 FERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99998776532 3566777788888999999999999999999889999999999999999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH
Q 002443 328 HFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAE 403 (921)
Q Consensus 328 ~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~ 403 (921)
+.-|. +.+.....|.+-++.|+.+.+...|+-.+.-+|...+.|.-+...-.+.|+.+.+...|++++.+. |....
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 99887 788889999999999999999999999999999999999999999999999999999999999874 33333
Q ss_pred HHHHHHHHH
Q 002443 404 AYNNLGVLY 412 (921)
Q Consensus 404 ~~~~la~~~ 412 (921)
.++..=.-|
T Consensus 1672 fffKkwLey 1680 (1710)
T KOG1070|consen 1672 FFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHH
Confidence 333333333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=81.41 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 002443 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 399 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p 399 (921)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
|
... |
| >PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-08 Score=96.27 Aligned_cols=129 Identities=14% Similarity=0.213 Sum_probs=86.7
Q ss_pred CeEEEecCCCC--cCCHHHHH-HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 659 FITFGSFNNLA--KITPKVLQ-VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 659 ~~~~~~~~~~~--K~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
.++||.+++.. |-...+++ +|.++.++.|+..|.+.|... + ++.+. ..++|.|.|.+ +++..
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~--~----~l~~~------~~~~v~~~g~~---~e~~~ 66 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP--D----ELKRL------RRPNVRFHGFV---EELPE 66 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-------HHCCH------HHCTEEEE-S----HHHHH
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH--H----HHHHh------cCCCEEEcCCH---HHHHH
Confidence 46788888664 77788999 999999999999999988642 1 23222 23699999997 47999
Q ss_pred hcccccEEecCCCC--CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcC
Q 002443 736 AYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD 808 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d 808 (921)
.++.|||++.|+.. +.+++.+|+|++|+|||+... . ...+....|..-++..|.+++++...+|.+|
T Consensus 67 ~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 67 ILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-G-----AEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp HHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-H-----CHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred HHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-c-----hhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 99999999999865 345799999999999998443 1 1223333455667789999999999999876
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-07 Score=106.28 Aligned_cols=142 Identities=22% Similarity=0.201 Sum_probs=118.0
Q ss_pred hCCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 002443 295 YNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMAL 361 (921)
Q Consensus 295 ~~~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al 361 (921)
..|.+..+| +..|.-+...++ ..+|+.+|+++++++|+++.++..++.++.... +..++.+..++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345555544 445555555444 789999999999999999999999888775542 3456667777766
Q ss_pred hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002443 362 SI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 362 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
.+ ++..+.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 64 6777889999999999999999999999999999994 889999999999999999999999999999999885
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.7e-08 Score=83.48 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (921)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|++.|+++++..|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 002443 130 GRLVEAAESYHKALSADPS 148 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~ 148 (921)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-07 Score=87.14 Aligned_cols=117 Identities=23% Similarity=0.188 Sum_probs=94.4
Q ss_pred HcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHH
Q 002443 312 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 385 (921)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 385 (921)
..++...+...+++.....|+. ..+.+.+|.++...|++++|+..|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677888888888888888887 5667788888999999999999999988877554 347788899999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002443 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (921)
Q Consensus 386 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (921)
+|+..++. +...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99998866 33334446778889999999999999999998875
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-07 Score=95.39 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHH
Q 002443 46 FEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACA 118 (921)
Q Consensus 46 ~~~~~~l~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 118 (921)
.+....+..|..+ +..|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3567888888876 66899999999999999999998 589999999999999999999999999998887 4789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002443 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
++.+|.++...|++++|...|+++++..|+...+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999997654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=90.11 Aligned_cols=93 Identities=29% Similarity=0.441 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 233 (921)
+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|.+...+..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3345566666666666666666666666554432 3456666666666666666666666666666666666666666
Q ss_pred HHHHCCCHHHHHHHHH
Q 002443 234 IYKNRGDLESAIACYE 249 (921)
Q Consensus 234 ~~~~~g~~~~A~~~~~ 249 (921)
++...|+...+...++
T Consensus 115 ~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 115 IYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHcCChHhHhhCHH
Confidence 6666665555444333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-06 Score=83.30 Aligned_cols=167 Identities=14% Similarity=0.042 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 002443 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 271 (921)
.....-|.+|...+++++|++...+. .+.++...-..++.++.+.+-|.+.++++.+++.+. ....++.++..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~ 181 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVK 181 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHH
Confidence 44555677888889999998887763 345666666778888889999999999988876653 44456666666
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002443 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (921)
Q Consensus 272 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 351 (921)
++. ..+++.+|.-+|++.-+..+..+.....++.+...++++++|...++.++..++++++.+.++..+-...|...
T Consensus 182 la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 182 LAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred Hhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 542 23457778888888777777777777788888888888888888888888888888888877777777777665
Q ss_pred HHHH-HHHHHHhhCCCCH
Q 002443 352 KAVE-CYQMALSIKPNFS 368 (921)
Q Consensus 352 ~A~~-~~~~al~~~p~~~ 368 (921)
++.. ++.+....+|+++
T Consensus 259 ~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 259 EVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHHhcCCcch
Confidence 5543 4444444556554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-05 Score=90.55 Aligned_cols=185 Identities=18% Similarity=0.168 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHH------------HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 002443 49 KDALSYANILRSRNKFVDALALY------------EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (921)
..|-.+|....+..+.+-|.-++ +++.+ +|+ +.-...+.....+|..++|+.+|++.-+.
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 45666777777766666655443 33322 333 23334566677889999999999887543
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH----------Hhh
Q 002443 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------LKI 186 (921)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~ 186 (921)
-.+-.+|...|.+++|.+.-+.-=++. +-..|++.+..+...++.+.|+++|+++ +..
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 345567888888888887765422222 2334777778888888888888888764 222
Q ss_pred CC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHH
Q 002443 187 DP----------HYAPAYYNLGVVYSELMQYDTALGCYEKAAL---------------------ERPMYAEAYCNMGVIY 235 (921)
Q Consensus 187 ~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------~~p~~~~~~~~la~~~ 235 (921)
+| .+...|...|..+...|+.+.|+.+|..+-. ....+..+.+.+|+.|
T Consensus 898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY 977 (1416)
T ss_pred ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh
Confidence 33 2455667778888889999999999988743 2234567889999999
Q ss_pred HHCCCHHHHHHHHHHHHH
Q 002443 236 KNRGDLESAIACYERCLA 253 (921)
Q Consensus 236 ~~~g~~~~A~~~~~~al~ 253 (921)
...|+..+|+..|.++-.
T Consensus 978 En~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999887643
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00011 Score=78.70 Aligned_cols=348 Identities=11% Similarity=0.039 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChHhHHH
Q 002443 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAEC 155 (921)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (921)
+.++..+|..+...| +..+++++++..+...|.+ +.....+|.++ ....+++.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356788888888899 9999999999999887764 45677788654 56789999999999998876554444444
Q ss_pred HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH
Q 002443 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAE 226 (921)
Q Consensus 156 la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~ 226 (921)
.-..+..++.++.... .+..|...+++++++....+ ...+.++.++.-..++..|++.+.--.+.... +..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 4555667777777766 88999999999999976654 45677899999999999998875432111100 011
Q ss_pred HHHHHH--HHHHHCCCHH---HHHHHHHHHHHhCCChHHHHHHHHHH---------------------------------
Q 002443 227 AYCNMG--VIYKNRGDLE---SAIACYERCLAVSPNFEIAKNNMAIA--------------------------------- 268 (921)
Q Consensus 227 ~~~~la--~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~--------------------------------- 268 (921)
+.+.+. .++...-+.. .+.....+..+....++.....+-..
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 111111 1111111111 11111122211111111100000000
Q ss_pred -------------------------------HHhhhhhhhhcCCHHHHHHHHHHHHHhCCC------CH--------HHH
Q 002443 269 -------------------------------LTDLGTKVKLEGDINQGVAYYKKALYYNWH------YA--------DAM 303 (921)
Q Consensus 269 -------------------------------~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~--------~~~ 303 (921)
+...-..-...|-+++|.++-++++..... .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 000000011235566677766666644211 11 123
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--HHH
Q 002443 304 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-F--SQS 370 (921)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~ 370 (921)
-.+..+-.-.|++.+|++....+.+. .|. .+.+...+|.....-+.++.|...|..|.++... + +-+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44556666778888888877766654 333 2456667777777788888888888888876433 2 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002443 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
..++|.+|...|+.+.-.+.++. +.|.+ ..+++..|...+.++++.||.....+.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 56788888887765544433332 34432 4567778888888999999999999998876
|
|
| >cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=109.11 Aligned_cols=160 Identities=17% Similarity=0.092 Sum_probs=115.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002443 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
++.++++.+.++ .|..+.+++++.++.+. +.+|+++|.+ .+...+.+.+...+. .++|.|.+... .....
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 365 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSG--DPEYEEALRELAARY---PGRVAVLIGYD-EALAH 365 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecC--CHHHHHHHHHHHHhC---CCcEEEEEeCC-HHHHH
Confidence 456668877766 78899999999988864 3889998865 334556666665554 47888776554 44455
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHH
Q 002443 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDE 797 (921)
Q Consensus 735 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i----------------~~~~~~ 797 (921)
..|..+||+|-|+-+ +.|.+.+|||++|+|||+ +++| |++|+| ..|.++
T Consensus 366 ~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------~~~g-------g~~e~v~~~~~~~~~~~G~~~~~~~~~~ 431 (476)
T cd03791 366 LIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIV-------RATG-------GLADTVIDYNEDTGEGTGFVFEGYNADA 431 (476)
T ss_pred HHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEE-------CcCC-------CccceEeCCcCCCCCCCeEEeCCCCHHH
Confidence 678889999999877 778899999999999997 5555 443333 246777
Q ss_pred HHHHHHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 798 YVQLALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 798 y~~~a~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
+.+...++. .+++.+.+++++..+ ..|+++..++++++.|+
T Consensus 432 l~~~i~~~l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 432 LLAALRRALALYRDPEAWRKLQRNAMA-----QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHh
Confidence 777666655 466666666554432 24999999999999986
|
Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-07 Score=97.30 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002443 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
++.|++.++.++++|.+|+..++++|.++|++..+++..|.++..+|+++.|+..|+++++++|+|..+...+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666666666665554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=84.02 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.5
Q ss_pred hCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002443 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (921)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (921)
.+|+|++|+..|+++++.+|. +...++.+|.|++..|++++|+..+++ .+.++.+....+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 002443 138 SYHKA 142 (921)
Q Consensus 138 ~~~~a 142 (921)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0011 Score=72.54 Aligned_cols=399 Identities=12% Similarity=0.038 Sum_probs=258.6
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH-
Q 002443 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT- 120 (921)
Q Consensus 42 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 120 (921)
...+.+.+.|..+.+.+..+ .++++...|++.+...|..+.+|.......+...+|+.-..+|.+++...-+ .+.|.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~l 91 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKL 91 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHH
Confidence 45677999999999988777 9999999999999999999999999999999999999999999999875332 44443
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----Hh---cCCCChHhHHHHHHHHH---HHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002443 121 HCGILYKDEGRLVEAAESYHKA----LS---ADPSYKPAAECLAIVLT---DLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (921)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a----l~---~~p~~~~~~~~la~~~~---~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (921)
.+..+....++...+.+..-++ +. .++.....|......+. ..|. +..+.+.+.-...|++++..--.+
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk-~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGK-YEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccccccc-HHHHHHHHHHHHHHHHHhcCcccc
Confidence 3334444455555444333333 32 23333333322221111 1122 223346667777888887653332
Q ss_pred HH-HHHHH-----------H--HHHHHcCCHHHHHHHHHHHHHh-------CCC----C-------HHHHHHHHHHHHHC
Q 002443 191 AP-AYYNL-----------G--VVYSELMQYDTALGCYEKAALE-------RPM----Y-------AEAYCNMGVIYKNR 238 (921)
Q Consensus 191 ~~-~~~~l-----------a--~~~~~~g~~~~A~~~~~~al~~-------~p~----~-------~~~~~~la~~~~~~ 238 (921)
.+ .|... | .+-.....|..|...+++.... .|. . .+.|.++...-...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 21 11111 1 1122334566677766665432 111 0 12333333222211
Q ss_pred C------C--HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCC-------HHHHHHHHHHHHHhCC-CCHHH
Q 002443 239 G------D--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-------INQGVAYYKKALYYNW-HYADA 302 (921)
Q Consensus 239 g------~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~~-~~~~~ 302 (921)
+ . -..-.-.|++++...+-.++.|+..+..+...++++...|+ .+++..+|++++.... .+...
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 12233467888888888888888888888777777766665 4667777777775432 23344
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-
Q 002443 303 MYNLGVAYGEMLK---FDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV- 377 (921)
Q Consensus 303 ~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~- 377 (921)
++.++..-...-+ ++....++++++.+...+ .-++..+-..-.+..-.+.|...|.+|-+..-....++..-|.+
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 5555544433333 677778888888764333 44666666777777788999999999987654444444444443
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCChhhHhhHH
Q 002443 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRL 443 (921)
Q Consensus 378 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~l 443 (921)
|...++.+-|.+.|+-.+...++.+..-+.....+..+++-..|...|++++.- .|+-..-.++++
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 566899999999999999999999999999999999999999999999999987 555443444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.7e-07 Score=84.75 Aligned_cols=88 Identities=15% Similarity=0.006 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 002443 52 LSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGIL 125 (921)
Q Consensus 52 l~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 125 (921)
+..+......++..++...++++++.+|+. ..+.+.+|.+++..|++++|...|++++...|+. ..+.+.++.+
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 333333334444444444444444444443 2333444444444444444444444444433322 2233344444
Q ss_pred HHHcCCHHHHHHHH
Q 002443 126 YKDEGRLVEAAESY 139 (921)
Q Consensus 126 ~~~~g~~~~A~~~~ 139 (921)
+...|++++|+..+
T Consensus 95 ~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 95 LLQQGQYDEALATL 108 (145)
T ss_pred HHHcCCHHHHHHHH
Confidence 44444444444444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.2e-08 Score=78.03 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 002443 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (921)
Q Consensus 52 l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (921)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677777777777777777777777777777777777777777777777777777777777664
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-08 Score=83.57 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 347 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (921)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (921)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777664 344566677777777777777777777 666666667777777777777777777777
Q ss_pred HHHH
Q 002443 425 YEQC 428 (921)
Q Consensus 425 ~~~a 428 (921)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-06 Score=83.37 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=135.1
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---H
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---C 117 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 117 (921)
....+..|+..|...++.|+|++|+..|+++...+|.+ ..+.+.++.++++.+++++|+..+++.+++.|.++ .
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 34578999999999999999999999999999988875 47899999999999999999999999999988764 4
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002443 118 AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (921)
Q Consensus 118 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (921)
+++..|.+++.. .-..+|...|+..+...|++.-+...... +..+...+
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~------------------i~~~~d~L----- 166 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR------------------IVKLNDAL----- 166 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH------------------HHHHHHHH-----
Confidence 677778776643 23456888889999999987543211111 11111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCh
Q 002443 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (921)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 258 (921)
+.--..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|+.
T Consensus 167 -A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 -AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 2223445677777777777777777777765543 4566666777777777777765544333333443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.3e-08 Score=78.45 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002443 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 373 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
.+|..+...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666666777777777777666666666777777777777777777777777777666653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.3e-07 Score=89.33 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (921)
+++..+..|..++..|+|.+|...|...++..|++ +.+++.||.+++.+|+|++|...|..+++..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 45669999999999999999999999999999986 5899999999999999999999999999987765 68899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002443 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
.+|.+...+|+.++|...|+++++..|+...+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999999998765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.5e-05 Score=78.87 Aligned_cols=272 Identities=17% Similarity=0.078 Sum_probs=163.9
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
.++-..+..|+...-.|+|++|.+-|+.++. +|+.- --+..+-......|..+.|..+-+.+-...|.-..++...-.
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 3455666778888899999999999999874 34321 122222233357899999999999999999999999988888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChH-hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKP-AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
..+..|+++.|+++.+......--... +....+.++...+.... ..
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-da-------------------------------- 243 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DA-------------------------------- 243 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cC--------------------------------
Confidence 899999999999998876543211111 11111222221111111 12
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHH
Q 002443 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~ 283 (921)
+...|...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|... ++..|... ..| +
T Consensus 244 --dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~a-----r~g--d 309 (531)
T COG3898 244 --DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRA-----RSG--D 309 (531)
T ss_pred --ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHh-----cCC--C
Confidence 234455555555566666555555556666666666666666666666555422 11111110 011 1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002443 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (921)
Q Consensus 284 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (921)
.++.-+++ .++...+.|++.+.....+...+..|++..|..--+.+...
T Consensus 310 ta~dRlkR-------------------------------a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 310 TALDRLKR-------------------------------AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred cHHHHHHH-------------------------------HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 11111111 12223345666666666677777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 002443 364 KPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 397 (921)
Q Consensus 364 ~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~al~~ 397 (921)
.|. ..++..|+.+-... |+-.++..++.++++.
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 665 34566667766554 8888888888888775
|
|
| >PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.3e-07 Score=101.23 Aligned_cols=261 Identities=17% Similarity=0.145 Sum_probs=145.3
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcC--CCceEEeec-cCCCC---CCCCCccEEEecCCCCCCCcccCcccc
Q 002443 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWI-GYPNT---TGLPTIDYRITDSLADPPETKQKHVEE 629 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r--~ApvQ~~~~-G~p~t---tG~~~~Dy~i~d~~~~p~~~~~~~~e~ 629 (921)
..+.+.|++.++||++--+.++. -...++.| ..|+=+.-. .+|+- ......|.+++.. |......-..+
T Consensus 81 ~~~~~~ik~~~pDvv~~~~~~~~--~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~~~d~ii~~~---~~~~~~~~~~~ 155 (357)
T PRK00726 81 LQARKILKRFKPDVVVGFGGYVS--GPGGLAARLLGIPLVIHEQNAVPGLANKLLARFAKKVATAF---PGAFPEFFKPK 155 (357)
T ss_pred HHHHHHHHhcCCCEEEECCCcch--hHHHHHHHHcCCCEEEEcCCCCccHHHHHHHHHhchheECc---hhhhhccCCCC
Confidence 35677889999999997654442 23333333 234422211 11110 0112334444321 11000122345
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 002443 630 LIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLVVKCKPFCCDSVRHR 706 (921)
Q Consensus 630 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 706 (921)
+..+|+..-. ... ..........++.+..+++.+.+. .|.....+ +++.++... | -++++.|.+. .+.
T Consensus 156 i~vi~n~v~~-~~~-~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g~-----~~~ 226 (357)
T PRK00726 156 AVVTGNPVRE-EIL-ALAAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKGD-----LEE 226 (357)
T ss_pred EEEECCCCCh-Hhh-cccchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCCc-----HHH
Confidence 6666653211 000 000111112333444445555543 34333333 666666443 4 4556666542 245
Q ss_pred HHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCccc---ccchhHHHh
Q 002443 707 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLT 783 (921)
Q Consensus 707 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~~~l~ 783 (921)
+.+..+ +|+. |.|.+.+ .++...+..+|+++-+ +|+.|++|||++|+|||+.+..... ...-+.++.
T Consensus 227 ~~~~~~-~~~~---v~~~g~~---~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~ 296 (357)
T PRK00726 227 VRAAYA-AGIN---AEVVPFI---DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARALV 296 (357)
T ss_pred HHHHhh-cCCc---EEEeehH---hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH
Confidence 555555 7774 8898886 3556666779999853 3668899999999999987642111 111245566
Q ss_pred hcCCccccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 784 KVGLKHLIA-KN--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 784 ~~gl~~~i~-~~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
..|..-++. .| .+++.+....|.+|++.++.+++..++.. .-++..+.++.+++..+
T Consensus 297 ~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 297 DAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred HCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 667655553 34 89999999999999999999999887662 33567777776666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=86.33 Aligned_cols=106 Identities=9% Similarity=0.031 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (921)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 409 (921)
.++..+..+..|.-++..|++++|...|+-..-.+|.+.+.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 33445566677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002443 410 VLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
.||..+|+.++|+.+|+.+++ .|.+.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 777777887778777777777 34433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-06 Score=94.59 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=117.9
Q ss_pred HHHHHHHHHcC---ChHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCH
Q 002443 304 YNLGVAYGEML---KFDMAIVFYELAF---HFNPHCAEACNNLGVIYKDR---------DNLDKAVECYQMALSIKPNFS 368 (921)
Q Consensus 304 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 368 (921)
+..|......+ ..+.|+.+|.+++ .++|+.+.+|..++.++... .+..+|....++|++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 44454444443 3567788888888 78888888888888887654 245678888999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhh
Q 002443 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (921)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~ 448 (921)
.++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+..-.+..-.|
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877665544333244
Q ss_pred ccC
Q 002443 449 INE 451 (921)
Q Consensus 449 ~~~ 451 (921)
...
T Consensus 419 ~~~ 421 (458)
T PRK11906 419 VPN 421 (458)
T ss_pred cCC
Confidence 433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-08 Score=103.22 Aligned_cols=241 Identities=15% Similarity=0.063 Sum_probs=180.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002443 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
+...|+.|+++|.|++|+.+|.+++..+|.++..+.+.+..|+++..|..|...+..++.++..+..+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002443 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (921)
+..+|.+-++.++.+.|+..+....++ .+. ...++. -+.+..|. +-+|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a----~i~-------Sl~E~~----I~~KsT~G-----------------~~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA----RIN-------SLRERK----IATKSTPG-----------------FTPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH----Hhc-------chHhhh----HHhhcCCC-----------------CCcc
Confidence 999999999999999999664433222 211 111110 01111111 1222
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002443 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (921)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 399 (921)
.+-..+++.+ ..-|..+...|.++.++.++..-+.....+...-.+ +..|.+.-++++++....+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 2222222211 122455666777777887777766655444444344 6677788888999998888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhh
Q 002443 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
.........+.+-.-.|...++...++.++.+.|.+..+...
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKET 340 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhh
Confidence 776666666667777788899999999999999998776544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-06 Score=94.54 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=86.7
Q ss_pred HHHHHHHHHCC---CHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHhhhhhh--hhcCCHHHHHHHHHHHHHhCCCCH
Q 002443 229 CNMGVIYKNRG---DLESAIACYERCL---AVSPNFEIAKNNMAIALTDLGTKV--KLEGDINQGVAYYKKALYYNWHYA 300 (921)
Q Consensus 229 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~lg~~~--~~~~~~~~A~~~~~~al~~~~~~~ 300 (921)
+..|......+ ..+.|+.+|.+++ +++|++..++..++.++......- .......+|....++++++++.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 55666665554 3567888999999 999999988888888776642211 123344555556666666666666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002443 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (921)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 367 (921)
.++..+|.++...++++.|+..|++++.++|+.+.+++..|.+....|+.++|++.++++++++|..
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 6666666555555555555555555555555555555555555555555555555555555555544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-07 Score=84.70 Aligned_cols=105 Identities=11% Similarity=0.016 Sum_probs=98.9
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (921)
.+..-+..+..|..++..|++++|..+|+-+...+|.+.+.++.+|.|+..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002443 124 ILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
.|+...|+.+.|+.+|+.++. .|.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 999999999999999999998 3443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6e-07 Score=93.45 Aligned_cols=107 Identities=26% Similarity=0.348 Sum_probs=86.9
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 002443 334 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 406 (921)
Q Consensus 334 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~ 406 (921)
....+..+..+ .+.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45556666655 55688888888888888888887 4688888888888889999988888888887764 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHh
Q 002443 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 440 (921)
.+|.++..+|++++|+..|+++++.+|++..+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8899998899999999999999999888765543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0013 Score=70.56 Aligned_cols=373 Identities=14% Similarity=0.040 Sum_probs=209.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 51 ~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (921)
+...|..+.+++++.+|.++|.++.+...+.+ +.+.++-...+-+++.+.-...+-..-+..|..+....-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45678899999999999999999987655443 4455555555667777777777777777788888888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhH------HHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHhhC-C----CCHH
Q 002443 126 YKDEGRLVEAAESYHKALSADPSYKPAA------ECLAIV--LTDLGTSLKLAGNTQDGIQKYYEALKID-P----HYAP 192 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~la~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~-p----~~~~ 192 (921)
.++.+++.+|++.+....+.-......+ ...... -...+.++...|.+.++...+++.+..- + -+.+
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 9999999999999887765522222111 111111 1235778889999999999999887652 1 2333
Q ss_pred HHH----HHHHHHHH----cCCHHHHHHHHHHH-------HHh--------CCCC---------------------HHHH
Q 002443 193 AYY----NLGVVYSE----LMQYDTALGCYEKA-------ALE--------RPMY---------------------AEAY 228 (921)
Q Consensus 193 ~~~----~la~~~~~----~g~~~~A~~~~~~a-------l~~--------~p~~---------------------~~~~ 228 (921)
.+. .+|..|.- ...++-+.++|+.+ -.. .|.. ..++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 333 34444431 12222222222222 111 1110 0111
Q ss_pred HHHHHHHH--------------HCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHH
Q 002443 229 CNMGVIYK--------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (921)
Q Consensus 229 ~~la~~~~--------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~ 294 (921)
.+..+-|. -..+.+++....+..... +.......+...+..+-....++++..+|.+++.-...
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~--~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASS--KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 11111000 011223333222222211 11112222222222222333445566666666555544
Q ss_pred hCCCCH-----------------------------------------------HHHHHHHHHHHHcCC-hHHHHHHHHHH
Q 002443 295 YNWHYA-----------------------------------------------DAMYNLGVAYGEMLK-FDMAIVFYELA 326 (921)
Q Consensus 295 ~~~~~~-----------------------------------------------~~~~~la~~~~~~g~-~~~A~~~~~~a 326 (921)
++|+.. ..+..-|.-+.+.|. -++|+..++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 444321 112333444555555 67777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhh---------CC---CCHHHHHHHH--HHHHHcCCHHHHHHH
Q 002443 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSI---------KP---NFSQSLNNLG--VVYTVQGKMDAAAEM 390 (921)
Q Consensus 327 l~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---------~p---~~~~~~~~la--~~~~~~g~~~~A~~~ 390 (921)
++..+.+.+.-+..-.. -...|.+|+. .+-+.+++ .| .+.+.-+.|+ ..++.+|+|.++.-+
T Consensus 407 l~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 77777665433322111 1112222221 11111111 11 2334444444 446778999999998
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 391 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
-.-..+..| ++.++..+|.++....+|++|..++...
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 888889999 7999999999999999999999988754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-06 Score=99.94 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=120.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHHHHHHHHHHHHHc--------CC-CCCCE
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLEQL--------GL-ESLRV 721 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~-~~~~~~~~~~~~~~~~--------gi-~~~rv 721 (921)
+..++++..|+ .|..+..++++.++++..|+ .+|++++.+. .+.+..+.+++.+++. |- +-.-|
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv 337 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI 337 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence 44567787866 89999999999999999997 4577765443 2223444555555543 11 11114
Q ss_pred EEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--cCC
Q 002443 722 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 794 (921)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~i--~~~ 794 (921)
++++...+.++..+.|+.+||+|-|+-+ +-+.|++|||+||+| ||. |+.+++. ..++ ..++ ..|
T Consensus 338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVl-------S~~~G~~-~~l~-~gllVnP~d 408 (456)
T TIGR02400 338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLIL-------SEFAGAA-QELN-GALLVNPYD 408 (456)
T ss_pred EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEE-------eCCCCCh-HHhC-CcEEECCCC
Confidence 5544433478999999999999999988 669999999999999 665 5544211 1122 3444 367
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002443 795 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 795 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 842 (921)
.++..+...++.+ +++.+....+++++++.+ +|...|++.+...+
T Consensus 409 ~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 409 IDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 8888887777766 667777777888888643 79999998876554
|
This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib |
| >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-07 Score=99.58 Aligned_cols=242 Identities=18% Similarity=0.187 Sum_probs=133.1
Q ss_pred HHHHHHHhCCccEEEecCCCCCCCchhhhhc--CCCceEEeec-cCCCC---CCCCCccEEEecCCCCCCCc-cc-Cccc
Q 002443 557 KVAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWI-GYPNT---TGLPTIDYRITDSLADPPET-KQ-KHVE 628 (921)
Q Consensus 557 ~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~--r~ApvQ~~~~-G~p~t---tG~~~~Dy~i~d~~~~p~~~-~~-~~~e 628 (921)
.+.+.|+..++||++--++.. +-...++. .-.|+=+.-. .+|+- -.....|.+++ +-.. .. .-.+
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~--~~~~~~~a~~~~~p~v~~~~~~~~~~~~~~~~~~~~~vi~-----~s~~~~~~~~~~ 152 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYV--SGPVGLAAKLLGIPLVIHEQNAVPGLANRLLARFADRVAL-----SFPETAKYFPKD 152 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCc--chHHHHHHHHhCCCEEEEcCCCCccHHHHHHHHhhCEEEE-----cchhhhhcCCCC
Confidence 567788999999998644332 22222222 2245432110 11110 01122344442 2211 11 2245
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHH-HHHHHHHHhHcCCcEEE-EecCCCCCHHHH
Q 002443 629 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKV-LQVWARILCAVPNSRLV-VKCKPFCCDSVR 704 (921)
Q Consensus 629 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~K~~~~~-~~~~~~il~~~p~~~l~-~~~~~~~~~~~~ 704 (921)
++..+|+.. ..... ...+.+....++++..++.++.+. .|...++ +++...+. . ++.+++ +.|.+ ..
T Consensus 153 ~~~~i~n~v-~~~~~-~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g-----~~ 223 (350)
T cd03785 153 KAVVTGNPV-REEIL-ALDRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG-----DL 223 (350)
T ss_pred cEEEECCCC-chHHh-hhhhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc-----cH
Confidence 666666531 11100 000112233445555455555433 2322233 34444443 2 455544 44443 33
Q ss_pred HHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCccc---ccchhHH
Q 002443 705 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSL 781 (921)
Q Consensus 705 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~~~ 781 (921)
+.+.+.++++ .++|.|.|.+ .+....|..||+++-+ +|++|++|||.+|+|||+.+-.... ....+..
T Consensus 224 ~~l~~~~~~~---~~~v~~~g~~---~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~ 294 (350)
T cd03785 224 EEVKKAYEEL---GVNYEVFPFI---DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANARA 294 (350)
T ss_pred HHHHHHHhcc---CCCeEEeehh---hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence 5566666665 3789999985 4667777789999943 3678999999999999986432211 1112455
Q ss_pred HhhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002443 782 LTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLM 823 (921)
Q Consensus 782 l~~~gl~~~i~~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 823 (921)
+...|..-++.. |.+++.+....|.+|++.+..++...++..
T Consensus 295 l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 295 LVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666676666653 799999999999999999999988877653
|
It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=100.66 Aligned_cols=144 Identities=16% Similarity=0.071 Sum_probs=112.8
Q ss_pred HHhCCCCHHH--HHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 002443 75 LEKDSGNVEA--HIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE--------GRLVEAAESYHK 141 (921)
Q Consensus 75 l~~~p~~~~~--~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~ 141 (921)
....|.+..+ ++..|..+...++ ..+|+.+|+++++++|+++.++..++.++... .+...+.+..++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455666554 4566766665544 77899999999999999999998888877553 234566667777
Q ss_pred HHhc--CCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002443 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (921)
Q Consensus 142 al~~--~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (921)
++.+ .+..+. ++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.
T Consensus 410 a~al~~~~~~~~-------~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPR-------IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 444433 355567777778999999999999999999 588999999999999999999999999999
Q ss_pred hCCCCHH
Q 002443 220 ERPMYAE 226 (921)
Q Consensus 220 ~~p~~~~ 226 (921)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998775
|
|
| >cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.6e-07 Score=102.95 Aligned_cols=171 Identities=16% Similarity=0.080 Sum_probs=117.3
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHH----HHHHHHHHHHHcCCC-----CCC
Q 002443 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDS----VRHRFLSTLEQLGLE-----SLR 720 (921)
Q Consensus 657 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~-~~~~----~~~~~~~~~~~~gi~-----~~r 720 (921)
.+..++++..++ .|..+..++++.++++..|+ .+|++++.+. .+.+ .++.+.+...+.+.. -..
T Consensus 262 ~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~ 341 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTP 341 (460)
T ss_pred CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCcee
Confidence 344567777765 89999999999999999997 5677776543 2222 333333333332211 133
Q ss_pred EEEc-cCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCc----EEecCCCcccccchhHHHhhcCCccccc--
Q 002443 721 VDLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLIA-- 792 (921)
Q Consensus 721 v~~~-~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~i~-- 792 (921)
|+|. +.++ .++..+.|+.|||++-|+-. +-|.|.+|||++|+| ||+ |+.+++.-. |-..++.
T Consensus 342 v~~~~g~v~-~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~-------S~~~G~~~~--~~~g~lv~p 411 (460)
T cd03788 342 VRYLYRSLP-REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLIL-------SEFAGAAEE--LSGALLVNP 411 (460)
T ss_pred EEEEeCCCC-HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEE-------eccccchhh--cCCCEEECC
Confidence 5554 4444 68999999999999999977 669999999999999 664 444322111 3344553
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002443 793 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 793 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 840 (921)
.|.+++.+...++.+++ +.++.+.++.++.+. -||...|+..+..
T Consensus 412 ~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~ 457 (460)
T cd03788 412 YDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLD 457 (460)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 48999999888888855 666777777777753 3899998887654
|
It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.6e-07 Score=93.32 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002443 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (921)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (921)
.|......|+.+++.|+|..|...|++++..-.. ...++.|++.|+.++++|.+|+....++|..
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4555677899999999999999999998876321 1456899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh
Q 002443 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (921)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 295 (921)
+|++..+++..|.++..+|+++.|+..|++++++.|++..+...+..+...+. ...++..+.|..++..
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~------~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR------EYEEKEKKMYANMFAK 355 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999887777666554432 2233445566666544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-05 Score=78.04 Aligned_cols=256 Identities=16% Similarity=0.098 Sum_probs=172.1
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 002443 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (921)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (921)
-++..|+|.+++..-.+.-... ...+....+.+.|..+|++...+.-....- .....+...++.....-++.++-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHH
Confidence 3445588888887766654433 567777788888888888776555443321 122344455555555555555544
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002443 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (921)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 325 (921)
..+.+.+........ ......-+.++...+++++|+...... .+.++...-..++.++.+++-|.+.+++
T Consensus 93 ~~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 93 ASLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333322211111 112223345566678888888877763 3455566666778888888999999888
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002443 326 AFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (921)
Q Consensus 326 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 401 (921)
+.+++.+ ..+..||..+.+ .+++.+|.-+|++.-+..+..+..+..++.+...+|++++|...++.++..++++
T Consensus 163 mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 163 MQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 8887654 344445555543 3468888889988888777778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHhhcCCCChh
Q 002443 402 AEAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRN 437 (921)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~-~~~~al~l~P~~~~ 437 (921)
++.+.++..+-...|...++.+ ...+....+|+++-
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999888888888766554 45566666777653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00079 Score=73.50 Aligned_cols=372 Identities=15% Similarity=0.059 Sum_probs=230.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Q 002443 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (921)
Q Consensus 72 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (921)
++-++.+|.+..+|+.+..-+..+ .+++..+.|++.+...|..+.+|.......+..++|+....+|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 667889999999999998887766 9999999999999999999999999999999999999999999999865332 22
Q ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHH----HHHHHHh---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHH
Q 002443 152 AAECLAIVLTDLGTSLKLAGNTQDGIQ----KYYEALK---IDPHYAPAYYNLGVVYS---------ELMQYDTALGCYE 215 (921)
Q Consensus 152 ~~~~la~~~~~lg~~~~~~g~~~~A~~----~~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~ 215 (921)
.|. +| +..+-...++...+.. .|+-++. .++.....|...+..+. ++.+.+.-.+.|+
T Consensus 88 LW~----lY--l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 88 LWK----LY--LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHH----HH--HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 221 11 1122223333333332 3333333 25555556665554432 3346677778888
Q ss_pred HHHHhCCCCHH-HHH-------------HHHHHHHHCCCHHHHHHHHHHHHHhC-------C----ChHHHHHHHHHHHH
Q 002443 216 KAALERPMYAE-AYC-------------NMGVIYKNRGDLESAIACYERCLAVS-------P----NFEIAKNNMAIALT 270 (921)
Q Consensus 216 ~al~~~p~~~~-~~~-------------~la~~~~~~g~~~~A~~~~~~al~~~-------p----~~~~~~~~la~~~~ 270 (921)
+++..--.+.+ .|. ..-.+-.....|..|...+++...+. | .....-......+.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 88764333221 111 11112223345666666666654431 1 11111111111111
Q ss_pred hhhhh-----hh-hcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHh
Q 002443 271 DLGTK-----VK-LEGDI--NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------FDMAIVFYELAFH 328 (921)
Q Consensus 271 ~lg~~-----~~-~~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~ 328 (921)
++-.. +. ..+.. ....-.+++++..-+..+++|+..+..+...++ .+++..+|++++.
T Consensus 242 n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 242 NWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 11111 11 11111 223345677777777778877776666665555 6788888888876
Q ss_pred hC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002443 329 FN-PHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (921)
Q Consensus 329 ~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 403 (921)
.- ..+...++.++..-...- +++.-..++++++.+...+. -++..+-..-.+..-.+.|...|.++-+..-..-.
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 53 233445555554433333 37777888888887754433 35556666666667788899999999876544334
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccC
Q 002443 404 AYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 451 (921)
Q Consensus 404 ~~~~la~~-~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~ 451 (921)
++..-|.+ |.-.++.+-|...|+-.++..++.+......+.-+.++.+
T Consensus 402 VfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 402 VFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc
Confidence 44433333 5568999999999999999999999888777666666654
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6e-05 Score=80.64 Aligned_cols=262 Identities=14% Similarity=0.100 Sum_probs=181.0
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHCCCH
Q 002443 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~ 241 (921)
.+...+..-.+.++....+.+.+....+..++..|++.+|.+.+... +...+. ....+.++|.+++++|.|
T Consensus 220 ~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y 299 (696)
T KOG2471|consen 220 RNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY 299 (696)
T ss_pred HHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH
Confidence 34444444444444455566778888899999999999999988664 222222 223568999999999999
Q ss_pred HHHHHHHHHHHHh---------C--CChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 242 ESAIACYERCLAV---------S--PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310 (921)
Q Consensus 242 ~~A~~~~~~al~~---------~--p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 310 (921)
.-+..+|.++++. . +...........++++.|..+...|+.-.|.++|.++......++..|..++.++
T Consensus 300 ~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 300 QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999961 1 1111122233456778888888899999999999999999999999999999988
Q ss_pred HHcCC-------------------------------------------------hHHHHHHHHHHHhhC-----------
Q 002443 311 GEMLK-------------------------------------------------FDMAIVFYELAFHFN----------- 330 (921)
Q Consensus 311 ~~~g~-------------------------------------------------~~~A~~~~~~al~~~----------- 330 (921)
+...+ .+-|.-+++.++-+-
T Consensus 380 ima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~ 459 (696)
T KOG2471|consen 380 IMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILS 459 (696)
T ss_pred HHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhh
Confidence 63211 133444555444320
Q ss_pred ----------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002443 331 ----------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (921)
Q Consensus 331 ----------------------------------p-~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (921)
| +. ..++.+.+.+-...|+.-.|+..-++.++.
T Consensus 460 ~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~- 538 (696)
T KOG2471|consen 460 VAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL- 538 (696)
T ss_pred hhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-
Confidence 0 00 123445666777889999999998888875
Q ss_pred CCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHH-----------------------hCCC----------C-----
Q 002443 365 PNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAIA-----------------------ANPT----------Y----- 401 (921)
Q Consensus 365 p~~~~~~~~la~~~-----~~~g~~~~A~~~l~~al~-----------------------~~p~----------~----- 401 (921)
++...++..||.+| ..+.+..+|...+.--+- ++|. .
T Consensus 539 ~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar 618 (696)
T KOG2471|consen 539 ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEAR 618 (696)
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHh
Confidence 44455565555554 456777777766654210 0110 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002443 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
...+++||.+|.-+|++++|..++.++..+-+
T Consensus 619 ~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 619 GVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 23678999999999999999999999998877
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=95.18 Aligned_cols=122 Identities=23% Similarity=0.229 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383 (921)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 383 (921)
..+...+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34455666678899999999999888865 666789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 384 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
++.|++..+++++..|++.+.|+.|+.+|..+|++++|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999877644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-05 Score=83.68 Aligned_cols=157 Identities=12% Similarity=0.054 Sum_probs=124.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHhCCC--------CHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA-VKLDPQ--------NAC 117 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~ 117 (921)
..+........+++..+..-+....+.+.....+.+.+++.++..++..|++.+|.+.+... +...|. .-.
T Consensus 205 k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ci 284 (696)
T KOG2471|consen 205 KLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCI 284 (696)
T ss_pred chhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhe
Confidence 45555666677788888888888888888888889999999999999999999999987653 222222 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-c--------CC--CChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002443 118 AHTHCGILYKDEGRLVEAAESYHKALS-A--------DP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (921)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~-~--------~p--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (921)
.|.++|.++++.|.|.-+..+|.++++ . .| ...-....-..++++.|..+...|+.-.|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 568999999999999999999999996 1 11 111112223456899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 002443 187 DPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 187 ~p~~~~~~~~la~~~~~ 203 (921)
.-.++..|..++.++..
T Consensus 365 fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 99999999999998864
|
|
| >TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-06 Score=96.76 Aligned_cols=297 Identities=13% Similarity=0.106 Sum_probs=163.1
Q ss_pred cchhhhhhhcccccccC-CceEEEEEecccCCChhhHHHHHHHhhhCCeeEEccC--CC--------HHHHHHHHHhCCc
Q 002443 499 THSVSYFIEAPLVYHDY-QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG--ID--------EKKVAAMVREDKI 567 (921)
Q Consensus 499 ~H~v~~~~~~~l~~hd~-~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~a~~i~~d~i 567 (921)
+.|-..++.+++..... ..|++.+..++..-+ ....+.+.+.-..+....+.+ -+ -.++++.+++.++
T Consensus 9 tr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~p 87 (365)
T TIGR00236 9 TRPEAIKMAPLIRALKKYPEIDSYVIVTAQHRE-MLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKP 87 (365)
T ss_pred cCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHH-HHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 44544566667665554 467888777776543 223333222111222233322 11 1357788999999
Q ss_pred cEEEecCCCCCCCchhhhh--cCCCceEEeeccCCCCCCCC--CccE-------EEecCCCCCCCcc-------cCcccc
Q 002443 568 DILVELTGHTANNKLGMMA--CQPAPVQVTWIGYPNTTGLP--TIDY-------RITDSLADPPETK-------QKHVEE 629 (921)
Q Consensus 568 diLvdl~g~t~~~r~~~~a--~r~ApvQ~~~~G~p~ttG~~--~~Dy-------~i~d~~~~p~~~~-------~~~~e~ 629 (921)
||++=. |.+...-.+..+ ..-.|| +..-|.-.|.+.. .-|- .++|.+..|.+.. ..-.|+
T Consensus 88 Div~~~-gd~~~~la~a~aa~~~~ipv-~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~~ 165 (365)
T TIGR00236 88 DIVLVQ-GDTTTTLAGALAAFYLQIPV-GHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQAKDNLLRENVKADS 165 (365)
T ss_pred CEEEEe-CCchHHHHHHHHHHHhCCCE-EEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHHHHHHHHHcCCCccc
Confidence 998754 222211112222 233565 2222222222211 1111 1345555553321 112345
Q ss_pred eEEcCCCccc---cCCCCC-CCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHH
Q 002443 630 LIRLPECFLC---YTPSPE-AGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 702 (921)
Q Consensus 630 ~~~lp~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 702 (921)
+..+++..+. +.+... ........+ .++.++++++++. .|..+.+++++.++.+..|+.++++.+.+. ..
T Consensus 166 I~vign~~~d~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~--~~ 242 (365)
T TIGR00236 166 IFVTGNTVIDALLTNVEIAYSSPVLSEFG-EDKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLN--PV 242 (365)
T ss_pred EEEeCChHHHHHHHHHhhccchhHHHhcC-CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCC--hH
Confidence 6666654321 111100 111111112 2345566666543 366789999999998888999888765431 23
Q ss_pred HHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhH
Q 002443 703 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVS 780 (921)
Q Consensus 703 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~ 780 (921)
.+..+.+ ..|.. ++|.|.+..+ ..+++..+..+|+++-++ |+.++||+++|+|||+.. |..-.
T Consensus 243 ~~~~~~~---~~~~~-~~v~~~~~~~-~~~~~~~l~~ad~vv~~S----g~~~~EA~a~g~PvI~~~~~~~~~e------ 307 (365)
T TIGR00236 243 VREPLHK---HLGDS-KRVHLIEPLE-YLDFLNLAANSHLILTDS----GGVQEEAPSLGKPVLVLRDTTERPE------ 307 (365)
T ss_pred HHHHHHH---HhCCC-CCEEEECCCC-hHHHHHHHHhCCEEEECC----hhHHHHHHHcCCCEEECCCCCCChH------
Confidence 3433332 34554 7899999876 578899999999997433 344799999999999963 22111
Q ss_pred HHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002443 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 817 (921)
Q Consensus 781 ~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~ 817 (921)
+...|..-++..|.++..+...++.+|++.+.+++.
T Consensus 308 -~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~ 343 (365)
T TIGR00236 308 -TVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSN 343 (365)
T ss_pred -HHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhh
Confidence 122354445667999999999899999877666654
|
Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7e-07 Score=84.27 Aligned_cols=105 Identities=27% Similarity=0.308 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002443 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 411 (921)
+..-|.-++..|+|++|..-|..|+.+.|... ..|.+.|.++.+++.++.|+..+.++|+++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 34456777888888888888888888887653 3788899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhhHhh
Q 002443 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
|.++.++++|++.|++.++++|....+...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999998877654
|
|
| >KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-06 Score=86.04 Aligned_cols=270 Identities=16% Similarity=0.199 Sum_probs=178.2
Q ss_pred HHHHHhCCccEEEecCCCCCCCchhhhh-cCCCceEEeeccCCCCCC-------------C-------------------
Q 002443 559 AAMVREDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWIGYPNTTG-------------L------------------- 605 (921)
Q Consensus 559 a~~i~~d~idiLvdl~g~t~~~r~~~~a-~r~ApvQ~~~~G~p~ttG-------------~------------------- 605 (921)
-+.|..--+||-||.+|+.- ..++|. +|--|| ++|.-||.-+- +
T Consensus 143 ~Eai~r~~Pdi~IDtMGY~f--s~p~~r~l~~~~V-~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~ 219 (465)
T KOG1387|consen 143 FEAIIRFPPDIFIDTMGYPF--SYPIFRRLRRIPV-VAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSA 219 (465)
T ss_pred HHHHHhCCchheEecCCCcc--hhHHHHHHccCce-EEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhc
Confidence 35666778999999999986 566776 555555 55667774221 0
Q ss_pred -CCccEEEecCCCCCCCcccCcccceEEcCCCccccCCCCCCCCCCCCCC-CCCCCeEEEecC--CCCcCCHHHHHHHHH
Q 002443 606 -PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPA-LTNGFITFGSFN--NLAKITPKVLQVWAR 681 (921)
Q Consensus 606 -~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~K~~~~~~~~~~~ 681 (921)
...|+.++... =...+.-.||.--.|.+.|.|.... ......+ ..+.-++.-+.. |+.|.|+ ++++.+-
T Consensus 220 G~~ad~vm~Nss-----WT~nHI~qiW~~~~~~iVyPPC~~e-~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al 292 (465)
T KOG1387|consen 220 GSKADIVMTNSS-----WTNNHIKQIWQSNTCSIVYPPCSTE-DLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFAL 292 (465)
T ss_pred cccceEEEecch-----hhHHHHHHHhhccceeEEcCCCCHH-HHHHHhcccCCcceEEEEEeecCcccccH-HHHHHHH
Confidence 12455554311 0111222344444455556554321 1000011 122223344444 8899999 9998887
Q ss_pred HHhHcCC------cEEEEecC--CCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC-CCCCc
Q 002443 682 ILCAVPN------SRLVVKCK--PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGT 752 (921)
Q Consensus 682 il~~~p~------~~l~~~~~--~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~-~~~g~ 752 (921)
-+...|. ..|.++|. +-.+......|+.+++.+.|+ ..|.|.-.+| .++....++.|-+.+.+- -...|
T Consensus 293 ~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHFG 370 (465)
T KOG1387|consen 293 YLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHFG 370 (465)
T ss_pred HHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCC-HHHHHHHhccceeehhhhhhhhcc
Confidence 7666654 78888864 323455667899999999998 6799998887 789999999999999998 45889
Q ss_pred ccHHHHhhcC-CcEEecCCCcccccchhHHHhhcCC-cccccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCC
Q 002443 753 TTTCESLYMG-VPCVTMAGSVHAHNVGVSLLTKVGL-KHLIAKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVC 829 (921)
Q Consensus 753 ~t~~eal~~G-vPvvt~~g~~~~~r~~~~~l~~~gl-~~~i~~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~ 829 (921)
.+.+|+|++| +|||--.|...-.=|. .-.|- .++.+.|.+||++....... |.+.+..+|...|... ..|
T Consensus 371 IsVVEyMAAGlIpi~h~SgGP~lDIV~----~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~---~RF 443 (465)
T KOG1387|consen 371 ISVVEYMAAGLIPIVHNSGGPLLDIVT----PWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSL---ARF 443 (465)
T ss_pred hhHHHHHhcCceEEEeCCCCCceeeee----ccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HHh
Confidence 9999999999 5677555543322221 11232 46889999999998887764 6666888888888764 447
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 002443 830 DGQNFALGLESTYRNMWH 847 (921)
Q Consensus 830 ~~~~~~~~~e~~~~~~~~ 847 (921)
....|.++++..+..+.+
T Consensus 444 sE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 444 GELKFDKDWENPICKLLE 461 (465)
T ss_pred hHHHHHHhHhHHHHHhhc
Confidence 888999999988776553
|
|
| >PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.2e-07 Score=100.42 Aligned_cols=139 Identities=22% Similarity=0.229 Sum_probs=94.5
Q ss_pred cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-CCCCCCEEEccCcCCcHHHHHhcccccEEecCCC
Q 002443 670 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 748 (921)
Q Consensus 670 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 748 (921)
++.+.+++++..+.+..|+.++++.+++ +..++.+.+...+. |+. +.+.. .+....|+.||+++-+
T Consensus 202 ~~~~~l~~a~~~l~~~~~~~~~ii~~~~---~~~~~~~~~~~~~~~~~~---v~~~~-----~~~~~~~~~aDl~v~~-- 268 (380)
T PRK00025 202 RLLPPFLKAAQLLQQRYPDLRFVLPLVN---PKRREQIEEALAEYAGLE---VTLLD-----GQKREAMAAADAALAA-- 268 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCC---hhhHHHHHHHHhhcCCCC---eEEEc-----ccHHHHHHhCCEEEEC--
Confidence 4578888999988888899998887642 24556677777776 664 44432 2456677889999975
Q ss_pred CCCcccHHHHhhcCCcEEecCCCcccccchhHHH---hhcCC----------ccccc--CCHHHHHHHHHHHhcCHHHHH
Q 002443 749 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL---TKVGL----------KHLIA--KNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 749 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l---~~~gl----------~~~i~--~~~~~y~~~a~~l~~d~~~~~ 813 (921)
+|++++||+++|+|||+.+.-..-....+..+ ...|+ ++++. .|.++..+....|.+|++.++
T Consensus 269 --sG~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 346 (380)
T PRK00025 269 --SGTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQ 346 (380)
T ss_pred --ccHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHH
Confidence 37777899999999998654321111111111 11122 34443 467899999999999999999
Q ss_pred HHHHHHHHHh
Q 002443 814 NLRMSLRDLM 823 (921)
Q Consensus 814 ~~r~~~~~~~ 823 (921)
.+++.+++..
T Consensus 347 ~~~~~~~~~~ 356 (380)
T PRK00025 347 ALLEGFTELH 356 (380)
T ss_pred HHHHHHHHHH
Confidence 9998875443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.8e-05 Score=77.04 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHH
Q 002443 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (921)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (921)
.+..++..|...++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++.+.+.|.++++ .
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----D 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh----h
Confidence 46789999999999999999999999999988765 5688999999999999999999999999999998876 3
Q ss_pred HHHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002443 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (921)
Q Consensus 158 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 229 (921)
-+++..|.+++.. .-..+|+..|++.+...|+..-+-..... +..+... -..--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 3466666665432 22356777777888888875432111111 1111111 123345
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHhhhh
Q 002443 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGT 274 (921)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~lg~ 274 (921)
.+|..|.+.|.+..|+..++.+++..|+.. +++..+..+|..+|.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 688999999999999999999999877654 455566677777764
|
|
| >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-06 Score=96.88 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=158.8
Q ss_pred hhcccccccC-CceEEEEEecccCCChhhHH-HHHH-HhhhCCeeEEccCCC----------HHHHHHHHHhCCccEEEe
Q 002443 506 IEAPLVYHDY-QNYKVVVYSAVVKADAKTIR-FREK-VMKKGGIWRDIYGID----------EKKVAAMVREDKIDILVE 572 (921)
Q Consensus 506 ~~~~l~~hd~-~~fev~~Y~~~~~~d~~~~~-~~~~-~~~~~~~~~~~~~~~----------~~~~a~~i~~d~idiLvd 572 (921)
+.+++..... ..+++.++.++..-|..... +..- .....+++..+.+.+ -.++.+.|++.++||++=
T Consensus 15 ~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~ 94 (363)
T cd03786 15 LAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLV 94 (363)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3444443333 47888887777655433211 1110 111123344444431 145667888899999874
Q ss_pred cCCCCCCCchhhhhcCCCceEEeec--cCCCCCCCCCccE-------EEecCCCCCCCcccCc-------ccceEEcCCC
Q 002443 573 LTGHTANNKLGMMACQPAPVQVTWI--GYPNTTGLPTIDY-------RITDSLADPPETKQKH-------VEELIRLPEC 636 (921)
Q Consensus 573 l~g~t~~~r~~~~a~r~ApvQ~~~~--G~p~ttG~~~~Dy-------~i~d~~~~p~~~~~~~-------~e~~~~lp~~ 636 (921)
. |++...-...++.|..-|.+... |. .|.-.+.++. .++|.++.|-+....+ .+++..+++.
T Consensus 95 ~-g~~~~~~~~~~aa~~~~iPvv~~~~g~-~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~ 172 (363)
T cd03786 95 L-GDTNETLAAALAAFKLGIPVAHVEAGL-RSFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNT 172 (363)
T ss_pred e-CCchHHHHHHHHHHHcCCCEEEEeccc-ccCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECch
Confidence 3 44332223344444433333321 21 1100011111 1345555554332221 2446566654
Q ss_pred ccc---cCCCCCC-CCCCCCCCCCCCCeEEEecCCC-----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 002443 637 FLC---YTPSPEA-GPVCPTPALTNGFITFGSFNNL-----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 707 (921)
Q Consensus 637 ~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~ 707 (921)
... +.+.... ...+...+++++.+++.++.+. .|..+.+++.+.++... +.++++.+.+ ..+..+
T Consensus 173 v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~----~~~~~l 246 (363)
T cd03786 173 MIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHP----RTRPRI 246 (363)
T ss_pred HHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCC----ChHHHH
Confidence 221 1111111 1111233445555555566654 46677888888776543 4455554433 456777
Q ss_pred HHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCC
Q 002443 708 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 787 (921)
Q Consensus 708 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl 787 (921)
++.+.+.|+..++|.|.+... ..+....|..||+++-++ | +.+.||+++|+|||+..... ..-.+...|.
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ad~~v~~S---g-gi~~Ea~~~g~PvI~~~~~~-----~~~~~~~~g~ 316 (363)
T cd03786 247 REAGLEFLGHHPNVLLISPLG-YLYFLLLLKNADLVLTDS---G-GIQEEASFLGVPVLNLRDRT-----ERPETVESGT 316 (363)
T ss_pred HHHHHhhccCCCCEEEECCcC-HHHHHHHHHcCcEEEEcC---c-cHHhhhhhcCCCEEeeCCCC-----ccchhhheee
Confidence 777788887447899988754 456667788899998554 2 35789999999999965321 1112334466
Q ss_pred cccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002443 788 KHLIAKNEDEYVQLALQLASDVTALANLR 816 (921)
Q Consensus 788 ~~~i~~~~~~y~~~a~~l~~d~~~~~~~r 816 (921)
.-++..|.++.++....+.+|+..+..++
T Consensus 317 ~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 317 NVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred EEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 55666678999999989999986655543
|
The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st |
| >TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-06 Score=96.03 Aligned_cols=155 Identities=21% Similarity=0.292 Sum_probs=98.8
Q ss_pred CCCCCCeEEEecCCC--CcCCHHH-HHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCc
Q 002443 654 ALTNGFITFGSFNNL--AKITPKV-LQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 730 (921)
Q Consensus 654 ~~~~~~~~~~~~~~~--~K~~~~~-~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 730 (921)
+++++.++++++.+. .|..... .+++.++.. ++.++++.+++ ...+.+.+.++++|+. ++|.|.. .
T Consensus 174 ~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g~----~~~~~l~~~~~~~~l~-~~v~~~~----~ 242 (348)
T TIGR01133 174 GLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTGK----NDLEKVKNVYQELGIE-AIVTFID----E 242 (348)
T ss_pred CCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECCc----chHHHHHHHHhhCCce-EEecCcc----c
Confidence 455566667776543 3333332 355555443 23444444332 1236777778888885 6666652 1
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCccc--ccchhHHHhhcCCccccc-C--CHHHHHHHHHHH
Q 002443 731 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIA-K--NEDEYVQLALQL 805 (921)
Q Consensus 731 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~~~gl~~~i~-~--~~~~y~~~a~~l 805 (921)
+....|..||+++-+ +|++|++|||++|+|||+.+-.... .+..+.++...|..-++. . +.+++.+....|
T Consensus 243 -~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 -NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred -CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 556667779999953 4678899999999999986432211 122334666655555553 2 499999999999
Q ss_pred hcCHHHHHHHHHHHHHHh
Q 002443 806 ASDVTALANLRMSLRDLM 823 (921)
Q Consensus 806 ~~d~~~~~~~r~~~~~~~ 823 (921)
.+|++.+.++++..++..
T Consensus 319 l~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 319 LLDPANLEAMAEAARKLA 336 (348)
T ss_pred HcCHHHHHHHHHHHHhcC
Confidence 999999999988887653
|
RL J Bacteriol 1993 Mar;175(6):1841-3 |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00031 Score=81.07 Aligned_cols=297 Identities=14% Similarity=0.045 Sum_probs=193.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
...+++.+|.....+.++..|+...+ ....|..+.+.|+.++|..+++..-...+++...+-.+-.+|..+++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a-------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYA-------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHH-------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 45688999999999999999987654 23345566778999999988887777778888888999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhc----CCH
Q 002443 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE----GDI 282 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~----~~~ 282 (921)
+++|..+|++++..+|+ .+..+.+-.+|.+.+.|.+-.+.--+..+..|+.+........++.. +..-... --.
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq-s~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ-SIFSENELLDPILL 170 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH-hccCCcccccchhH
Confidence 99999999999999999 88888888899999988887777777777778766443333222221 1000000 112
Q ss_pred HHHHHHHHHHHHhC-CCCH-HHHHHHHHHHHHcCChHHHHHHHHHH-H-hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 283 NQGVAYYKKALYYN-WHYA-DAMYNLGVAYGEMLKFDMAIVFYELA-F-HFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (921)
Q Consensus 283 ~~A~~~~~~al~~~-~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a-l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (921)
.-|...+++.++.. +-.. .-....-.++..+|++++|...+..- . ...+.+...-+.....+...+++.+-.+...
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34555556666554 2211 11223345667788899999998432 2 3344455555667778888899999999999
Q ss_pred HHHhhCCCCHHHHHH-H------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 002443 359 MALSIKPNFSQSLNN-L------------GVVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDA 424 (921)
Q Consensus 359 ~al~~~p~~~~~~~~-l------------a~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~ 424 (921)
+++...+++...+.. . +..+...+..+..++..++.+..+...+ -++..+-.-+...|+.+++...
T Consensus 251 ~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 251 RLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred HHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 999888887222111 1 1112222334444444444444422222 2333444444567888887766
Q ss_pred HHHHhhcC
Q 002443 425 YEQCLKID 432 (921)
Q Consensus 425 ~~~al~l~ 432 (921)
|-+-+-..
T Consensus 331 y~~kfg~k 338 (932)
T KOG2053|consen 331 YFKKFGDK 338 (932)
T ss_pred HHHHhCCC
Confidence 65544433
|
|
| >cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=95.87 Aligned_cols=188 Identities=14% Similarity=0.096 Sum_probs=113.9
Q ss_pred cceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 002443 628 EELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 704 (921)
Q Consensus 628 e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~ 704 (921)
+++..+|+..- .|.+..... ..+......+.+++|.+++.. |... ++...+.+..|+..|+|+|.+... ...
T Consensus 173 ~~i~~i~ngvd~~~f~~~~~~~-~~~~~~~~~~~~~i~y~G~l~~~~d~---~ll~~la~~~p~~~~vliG~~~~~-~~~ 247 (373)
T cd04950 173 PNVVLVPNGVDYEHFAAARDPP-PPPADLAALPRPVIGYYGAIAEWLDL---ELLEALAKARPDWSFVLIGPVDVS-IDP 247 (373)
T ss_pred CCEEEcccccCHHHhhcccccC-CChhHHhcCCCCEEEEEeccccccCH---HHHHHHHHHCCCCEEEEECCCcCc-cCh
Confidence 77888886421 122221111 001111233455677777665 4443 455667778899999999875111 011
Q ss_pred HHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC------CCcccHHHHhhcCCcEEecCCCcccccch
Q 002443 705 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY------AGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 705 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~------~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
.. + .. .++|.|+|.++ +++....++.+||++-|+-. +.++.++|+|++|+|||+-. ++
T Consensus 248 ~~----~--~~--~~nV~~~G~~~-~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~-------~~ 311 (373)
T cd04950 248 SA----L--LR--LPNVHYLGPKP-YKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATP-------LP 311 (373)
T ss_pred hH----h--cc--CCCEEEeCCCC-HHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecC-------cH
Confidence 11 1 11 37899999987 68889999999999988843 22467999999999999743 32
Q ss_pred hHHHhhcCCcccccCCHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 779 VSLLTKVGLKHLIAKNEDEYVQLALQL-ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 779 ~~~l~~~gl~~~i~~~~~~y~~~a~~l-~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
.+....+..-+++.|.+++++...+. ..+...+...+ +. +.+. ++++..+..+++.++
T Consensus 312 -~~~~~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~---~~-~~~~--~sW~~~a~~~~~~l~ 370 (373)
T cd04950 312 -EVRRYEDEVVLIADDPEEFVAAIEKALLEDGPARERRR---LR-LAAQ--NSWDARAAEMLEALQ 370 (373)
T ss_pred -HHHhhcCcEEEeCCCHHHHHHHHHHHHhcCCchHHHHH---HH-HHHH--CCHHHHHHHHHHHHH
Confidence 22232232234567899999999884 44433222211 11 2223 788988888886554
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.2e-06 Score=92.55 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=106.8
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (921)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (921)
...++++.|++.+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|+++
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4467899999999999888765 6677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (921)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 394 (921)
.+++++..|++...|..|+.+|...|++++|+..++.+
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999877744
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.2e-06 Score=75.46 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 002443 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG 375 (921)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 375 (921)
+.+.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34555555555666666666666655543222 345555556666666666666666655555555 444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 002443 376 VVYTVQGKMDAAAEMIEKAI 395 (921)
Q Consensus 376 ~~~~~~g~~~~A~~~l~~al 395 (921)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555566666555555444
|
|
| >PLN02275 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=97.04 Aligned_cols=132 Identities=14% Similarity=0.103 Sum_probs=92.4
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHh-----------------HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCC
Q 002443 660 ITFGSFNN--LAKITPKVLQVWARILC-----------------AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 720 (921)
Q Consensus 660 ~~~~~~~~--~~K~~~~~~~~~~~il~-----------------~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~r 720 (921)
++++...+ ..|-.+.++++...+.. ..|+.+|+++|.| +.++.+++.++++|++ +
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~- 287 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG----PQKAMYEEKISRLNLR-H- 287 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC----CCHHHHHHHHHHcCCC-c-
Confidence 34444454 46888888888776642 3589999999877 4678888999999996 5
Q ss_pred EEEcc-CcCCcHHHHHhcccccEEecCCC----CCCcccHHHHhhcCCcEEecCCCcccccchh-HHHhhcCCcccccCC
Q 002443 721 VDLLP-LILLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIAKN 794 (921)
Q Consensus 721 v~~~~-~~~~~~~~~~~~~~~Dv~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~i~~~ 794 (921)
|+|.+ .++ .++....|..+||++-+.+ .+-+++.+|||+||+|||+ +++|+ .-+-.-|-..++..+
T Consensus 288 v~~~~~~~~-~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa-------~~~gg~~eiv~~g~~G~lv~~ 359 (371)
T PLN02275 288 VAFRTMWLE-AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-------VSYSCIGELVKDGKNGLLFSS 359 (371)
T ss_pred eEEEcCCCC-HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEE-------ecCCChHHHccCCCCeEEECC
Confidence 77765 465 6788888999999985322 3457899999999999997 33331 111112555566667
Q ss_pred HHHHHHHHHHH
Q 002443 795 EDEYVQLALQL 805 (921)
Q Consensus 795 ~~~y~~~a~~l 805 (921)
.+++.+...+|
T Consensus 360 ~~~la~~i~~l 370 (371)
T PLN02275 360 SSELADQLLEL 370 (371)
T ss_pred HHHHHHHHHHh
Confidence 77776655544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.1e-06 Score=76.05 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=96.8
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (921)
.....++..|...++.|+|.+|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 468899999999999999999999999999988764 57899999999999999999999999999999875 578
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCChHh
Q 002443 120 THCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 120 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 152 (921)
+..|.+++.+.. ..+|...|++.++..|++..+
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999988876 889999999999999997654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-06 Score=80.48 Aligned_cols=108 Identities=23% Similarity=0.240 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (921)
+..+-..|+.++.+|+|++|..-|..+|+.-|... .+|.+.|.++++++.++.|+..+.++++++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 34455678899999999999999999999988743 4778899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHH
Q 002443 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (921)
|.+|.+..++++|++.|+++++.+|....+...
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999999997665443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.9e-07 Score=73.01 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=54.3
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
++..|+|++|+..|++++..+|++..+++.+|.+++..|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3567888888888888888888888888888888888888888888888888888887777766654
|
... |
| >TIGR00215 lpxB lipid-A-disaccharide synthase | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.3e-07 Score=98.86 Aligned_cols=250 Identities=17% Similarity=0.141 Sum_probs=139.6
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcCC---------CceEEeeccCCCCCCCCCccEEEecCCCCCCCcccCc
Q 002443 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP---------APVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH 626 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~---------ApvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~ 626 (921)
.++.+.|++.++|++|=.+| .+.+-....+.|- +|-|-+|-|.-+-.-....|.+++-- |....+|
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~----~~e~~~~ 153 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAIL----PFEKAFY 153 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccC----CCcHHHH
Confidence 47888999999999987665 5444322222222 22222232221112234455555421 2222233
Q ss_pred cc---ceEEcCCCccccCCC--CCCCCCCCCCCCCCCCeEEEec--CCC---CcCCHHHHHHHHHHHhHcCCcEEEEecC
Q 002443 627 VE---ELIRLPECFLCYTPS--PEAGPVCPTPALTNGFITFGSF--NNL---AKITPKVLQVWARILCAVPNSRLVVKCK 696 (921)
Q Consensus 627 ~e---~~~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~ 696 (921)
.+ +...+.+......+. +.....+...+++++..+++.+ ++. .|+.|.++++...+.+..|+.++++.+.
T Consensus 154 ~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 154 QKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred HhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 22 233333321111010 0000011223455554445544 243 4688999999999988899988866433
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCccccc
Q 002443 697 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN 776 (921)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r 776 (921)
+. .....+.+..+..|.. .+|.+.+. +....|..+|+++-++ |++|+|++++|+|+|....-..-+.
T Consensus 234 ~~---~~~~~~~~~~~~~~~~-~~v~~~~~-----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 234 NF---KRRLQFEQIKAEYGPD-LQLHLIDG-----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred Cc---hhHHHHHHHHHHhCCC-CcEEEECc-----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 21 2334455555566664 57766543 1224667799999666 7777899999999887643322222
Q ss_pred chhHHH------------h-hcCCccccc--CCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHh
Q 002443 777 VGVSLL------------T-KVGLKHLIA--KNEDEYVQLALQLASDV----TALANLRMSLRDLM 823 (921)
Q Consensus 777 ~~~~~l------------~-~~gl~~~i~--~~~~~y~~~a~~l~~d~----~~~~~~r~~~~~~~ 823 (921)
..+..+ . .-..+|++- -+++...+...+|..|+ +.++.+++.+++.+
T Consensus 301 ~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 222221 1 122356663 36788889999999999 99999999887764
|
Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-06 Score=74.13 Aligned_cols=99 Identities=24% Similarity=0.149 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHH
Q 002443 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPA 193 (921)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 193 (921)
.+++.+|.++-..|+.++|+..|++++........ ...++..+|..+...|++++|+..+++.+...|+ +..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~----~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD----RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 34566666666666666666666666665443322 2334556666666666666666666666666555 5555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002443 194 YYNLGVVYSELMQYDTALGCYEKAAL 219 (921)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~ 219 (921)
...++.++...|++++|+..+-.++.
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666666665543
|
|
| >PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-06 Score=101.21 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=122.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCH-HHHHHHHHHHHHc--------CC-CCC-C
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-SVRHRFLSTLEQL--------GL-ESL-R 720 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~-~~~~~~~~~~~~~--------gi-~~~-r 720 (921)
+..++.+..|+ .|..+..++++.++++..|+ .+|++++.|..+. +..+.+++.+.+. |- +.. .
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv 343 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPI 343 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceE
Confidence 44567777876 89999999999999999996 6788886443222 3333444444332 22 111 2
Q ss_pred EEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhc-----CCcEEecCCCcccccchhH-HHhhcCCcccc--
Q 002443 721 VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI-- 791 (921)
Q Consensus 721 v~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~-----GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~i-- 791 (921)
+.|.+.++ .++..+.|+.+||||-|+-+ +-+.+++|||++ |+|||+ ...|++ .|. ..++
T Consensus 344 ~~~~~~~~-~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls-------~~~G~~~~l~----~~llv~ 411 (726)
T PRK14501 344 HYFYRSLP-FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILS-------EMAGAAAELA----EALLVN 411 (726)
T ss_pred EEEeCCCC-HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEe-------cccchhHHhC----cCeEEC
Confidence 34556555 78999999999999999988 559999999999 556764 222211 111 1233
Q ss_pred cCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002443 792 AKNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 850 (921)
Q Consensus 792 ~~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 850 (921)
..|.++..+...++.+++ +.+....+++++.+. -||+..+++.+.+.|+.+|...-
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 358888888888887754 444444456776653 38999999999999999997644
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=95.02 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002443 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 364 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
+|+++.+++++|.+|..+|++++|+..|+++++++|++.++ |+++|.+|..+|++++|++++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57777888888888888888888888888888888887754 888888888888888888888888886
|
|
| >cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.4e-06 Score=85.43 Aligned_cols=105 Identities=16% Similarity=0.061 Sum_probs=78.9
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccc
Q 002443 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 740 (921)
Q Consensus 661 ~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~ 740 (921)
.+|.++. .|..+.+++++.++.+..|+.++++.|.+.. ...........+.. ++|.+.+.++..++....+..|
T Consensus 109 ~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~----~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 182 (229)
T cd01635 109 FVGRLAP-EKGLDDLIEAFALLKERGPDLKLVIAGDGPE----REYLEELLAALLLL-DRVIFLGGLDPEELLALLLAAA 182 (229)
T ss_pred EEEeecc-cCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC----hHHHHHHHHhcCCc-ccEEEeCCCCcHHHHHHHhhcC
Confidence 5666554 5999999999999999999999999987532 22222224566665 8999999875444555555569
Q ss_pred cEEecCCCC-CCcccHHHHhhcCCcEEecCCC
Q 002443 741 DISLDTFPY-AGTTTTCESLYMGVPCVTMAGS 771 (921)
Q Consensus 741 Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~ 771 (921)
||+|-|.-. +.+++.+|||+||+|||+-...
T Consensus 183 di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 183 DVFVLPSLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred CEEEecccccCcChHHHHHHhCCCCEEEcCCC
Confidence 999988865 6689999999999999984433
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.8e-06 Score=83.17 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=88.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 002443 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~ 410 (921)
.++.|.-+++.|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|+. +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777777888888888888888888888876 5688889999999999999999998888887665 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCChhhHhh
Q 002443 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
+..++|+.++|...|+++++..|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999988766544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5e-05 Score=71.27 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002443 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
+.+....-..+.++..|. ..-.+.||..+.+.|++.+|...|++++. +..+++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 334444444444444454 34467899999999999999999999987 4677889999999999999999999999999
Q ss_pred HHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 360 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 360 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
..+.+|. .++....+|.++...|++.+|...|+.++...|+ +++....+..+.++|+..+|..-+....+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999875 4678888999999999999999999999999987 77888889999999999988877666543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=71.00 Aligned_cols=54 Identities=41% Similarity=0.514 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 381 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
.|++++|++.|+++++.+|++..+++.+|.+|.+.|++++|...+++++..+|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444444444444444444444444444444
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00014 Score=70.91 Aligned_cols=190 Identities=15% Similarity=0.108 Sum_probs=122.6
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChH
Q 002443 95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174 (921)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 174 (921)
.+++++|.++|.++ |.+|...+++..|-..|.++-+..-... .....+..|...+.+|.+ .+.+
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~-skhDaat~YveA~~cykk-~~~~ 90 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAG-SKHDAATTYVEAANCYKK-VDPE 90 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHhhc-cChH
Confidence 34677777777665 3344444555555555555543322111 111124445555555544 4788
Q ss_pred HHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCH
Q 002443 175 DGIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 175 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~ 241 (921)
+|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+.... -...+...+..-..+++|
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888887775543 33455788888765 8999999999999775432 234566677778889999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 002443 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (921)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 300 (921)
.+|+..|++.....-++....+..-..+..-|..+....+.-.+...+++..+.+|...
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 99999999998877766655555555556666666666677777777777777777644
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=69.56 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=51.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (921)
..+++..++|++|+++++++++.+|+++..+..+|.++..+|++++|+..|+++++..|++..+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777777778888888777777777777777777777777887788777777777777766655443
|
|
| >KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=88.31 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=130.0
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC-----CcEEEEecC-CCC-----CHHHHHHHHHHHHHcCCCCC
Q 002443 653 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP-----NSRLVVKCK-PFC-----CDSVRHRFLSTLEQLGLESL 719 (921)
Q Consensus 653 ~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p-----~~~l~~~~~-~~~-----~~~~~~~~~~~~~~~gi~~~ 719 (921)
.+..+..+.|.++|+. -|-..-.+..+.......| .-++.+.+. |.. .-.....|++.+++.++..+
T Consensus 267 ~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~ 346 (495)
T KOG0853|consen 267 RGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQ 346 (495)
T ss_pred eeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCc
Confidence 3455656779999954 5666666667777666664 445555541 221 12244678888999999778
Q ss_pred CEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEe-cCCCcccccchhHHHhhcCCcc-cccCCHH
Q 002443 720 RVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLTKVGLKH-LIAKNED 796 (921)
Q Consensus 720 rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt-~~g~~~~~r~~~~~l~~~gl~~-~i~~~~~ 796 (921)
.|.|++.... .+-..++..+.+.+-+... ..|.|++|||++|+|||+ ..|.+...-+. |..+ +|..+.+
T Consensus 347 ~v~~~~s~~~-~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~dp~~e 418 (495)
T KOG0853|consen 347 FVWFLPSTTR-VAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLIDPGQE 418 (495)
T ss_pred eEEEecCCch-HHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceeeCCchH
Confidence 9999888764 4446667778888888876 999999999999999885 44554333222 4444 3344555
Q ss_pred ---HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002443 797 ---EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 797 ---~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
.....-++|.+|++.+.+++..-++++.+. |.+..|..++.+...
T Consensus 419 ~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~--fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 419 AVAELADALLKLRRDPELWARMGKNGLKRVKEM--FSWQHYSERIASVLG 466 (495)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhH
Confidence 488889999999999999999999998765 888888887777765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.3e-06 Score=68.98 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=37.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002443 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 376 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
.+|...+++++|++++++++.++|+++..+..+|.++..+|++++|++.|+++++..|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4455555555555555555555555555555555555555555555555555555555555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00035 Score=69.32 Aligned_cols=226 Identities=14% Similarity=0.131 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCC------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002443 191 APAYYNLGVVYSELMQYDTALGCYEKAALER-------------PMY------AEAYCNMGVIYKNRGDLESAIACYERC 251 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (921)
...|...-.++.++..+++|..-++..-+.+ |+. .......|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4455555666677777777776666554332 111 123344566777778877777666554
Q ss_pred HHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-
Q 002443 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN- 330 (921)
Q Consensus 252 l~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 330 (921)
...-.+ +-.........+..++.+++-+ ..+.+.+..++...|+|.-....+.+.++.+
T Consensus 149 ~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 149 KTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 432111 1111111223355566666544 3467888889999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002443 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (921)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 404 (921)
|..+.....+|.+..+.|+.+.|..+|+..-+.. ....-+..+.+.++.-.+++.+|...+.+++..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 6678888999999999999999999999654432 2234577888899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002443 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
.++.|.|+.-.|+...|++..+.+++..|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999754
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-05 Score=71.49 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 002443 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNN 407 (921)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~ 407 (921)
+..++.-|...++.|+|++|++.|+......|.. ..+...++.+|++.+++++|+..+++.++++|+++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4445555555556666666666666655554432 34556666666666666666666666666655543 35556
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHhhcCCCChhhH
Q 002443 408 LGVLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 408 la~~~~~~g~---------------~~~A~~~~~~al~l~P~~~~a~ 439 (921)
.|.++..+.. ..+|...|++.++..|++.-+.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 6666555554 7789999999999999987654
|
|
| >PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-05 Score=94.17 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=127.3
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE----EEEecCCC-CCHHHHHHHHHHHHHcC--CCC--CC-----E
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPF-CCDSVRHRFLSTLEQLG--LES--LR-----V 721 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~~~~~~~-~~~~~~~~~~~~~~~~g--i~~--~r-----v 721 (921)
+..++.+..++ .|..+..++++.++|+..|+.+ |+.++.+. .+.+..+.+++.+.+.+ |.. .. |
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv 357 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPI 357 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCcee
Confidence 33456667765 8999999999999999999863 44344333 23345567777777664 431 12 3
Q ss_pred EEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--cCC
Q 002443 722 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 794 (921)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~i--~~~ 794 (921)
+++...-+.++..+.|+.+||||-|+-+ +-+.+.+|||+||+| +|. |++++.-- .+|-..++ ..|
T Consensus 358 ~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl-------Se~~G~~~-~l~~~allVnP~D 429 (797)
T PLN03063 358 HHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL-------SEFAGAGQ-SLGAGALLVNPWN 429 (797)
T ss_pred EEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe-------eCCcCchh-hhcCCeEEECCCC
Confidence 3333322368999999999999999988 668899999999998 554 55542111 12333444 368
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002443 795 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 849 (921)
Q Consensus 795 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 849 (921)
.++..+...++.+ ++++++...+.+++.+. -+|...|++.+.+.+...|...
T Consensus 430 ~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~---~~~~~~Wa~~fl~~l~~~~~~~ 482 (797)
T PLN03063 430 ITEVSSAIKEALNMSDEERETRHRHNFQYVK---THSAQKWADDFMSELNDIIVEA 482 (797)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh---hCCHHHHHHHHHHHHHHHhhhh
Confidence 8888888888888 77777777777777653 3689999999999999998643
|
|
| >TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-06 Score=95.41 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=115.6
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC------------------
Q 002443 656 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE------------------ 717 (921)
Q Consensus 656 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~------------------ 717 (921)
+...|.++.=.-+.|-....++++.++++.+|++.|.+.|.+.. ......+++..++.+..
T Consensus 319 ~~~~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 319 YETEIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred cceEEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 34445455112278889999999999999999999999876522 23445555555555554
Q ss_pred ----------CCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCC
Q 002443 718 ----------SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 787 (921)
Q Consensus 718 ----------~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl 787 (921)
.+||.|.+... ..+....|..+.|++|+....|-.|.+||+..|||+|- -|+ +-+-.-|-
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~-e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqIn-yg~--------~~~V~d~~ 467 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTN-EEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQIN-KVE--------TDYVEHNK 467 (519)
T ss_pred cccchhhcccccEEEEEecCC-HHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeee-cCC--------ceeeEcCC
Confidence 16999998754 35888999999999999987554499999999999992 111 11222377
Q ss_pred cccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002443 788 KHLIAKNEDEYVQLALQLASDVTALANLRMSLRDL 822 (921)
Q Consensus 788 ~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~ 822 (921)
.+.|..|.++..+.++.+..|+..+.++....-+.
T Consensus 468 NG~li~d~~~l~~al~~~L~~~~~wn~~~~~sy~~ 502 (519)
T TIGR03713 468 NGYIIDDISELLKALDYYLDNLKNWNYSLAYSIKL 502 (519)
T ss_pred CcEEeCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 78888999999999999999998777777666554
|
This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0011 Score=74.31 Aligned_cols=210 Identities=13% Similarity=0.150 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHH
Q 002443 194 YYNLGVVYSELMQYDTALGCYEKA------ALE----RPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (921)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (921)
|-.-|.+|.+..++++|+++|++. +++ .|.. ...-...|.-+...|+++.|+..|-++-.+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~-------- 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL-------- 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------
Confidence 334455556666666666666542 221 1211 112223455556666666666665543211
Q ss_pred HHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002443 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (921)
Q Consensus 263 ~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 342 (921)
...-.......++.+|+.+++.....+ .....|-.++.-|...|+|+.|.++|.++- ....-..
T Consensus 736 -------~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~ 799 (1636)
T KOG3616|consen 736 -------IKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAID 799 (1636)
T ss_pred -------HHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHH
Confidence 111111112345555555554432221 112345566777778888888888776642 2223345
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH-------------HHHHHHH------HH----hC
Q 002443 343 IYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAA-------------AEMIEKA------IA----AN 398 (921)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A-------------~~~l~~a------l~----~~ 398 (921)
.|-+.|++++|.++-+++.. |.. ...|...+.-+.+.|++.+| +.+|++. +. .+
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC
Confidence 56667777777766665532 222 22344444445555555444 4444332 11 12
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002443 399 PTY-AEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (921)
Q Consensus 399 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (921)
|+. .+.+..+|.-|...|+..+|...|-++-
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 322 3567788888999999998888877653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-05 Score=86.16 Aligned_cols=80 Identities=30% Similarity=0.344 Sum_probs=68.9
Q ss_pred CCCCCcccccccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHH
Q 002443 32 TSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEA 108 (921)
Q Consensus 32 ~s~s~~~~~~~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a 108 (921)
+++++........+..+..++.+|..|+..|+|++|+..|+++++.+|++.++ ++++|.+|..+|++++|+.+++++
T Consensus 59 ~~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 59 PSSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444556677889999999999999999999999999999999999855 999999999999999999999999
Q ss_pred HHh
Q 002443 109 VKL 111 (921)
Q Consensus 109 l~~ 111 (921)
+++
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 987
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00018 Score=70.22 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 002443 315 KFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (921)
Q Consensus 315 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 381 (921)
+.++|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+..... ...+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 5555555555555553322 23344677777655 78899999999988764332 23566677777888
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHH
Q 002443 382 GKMDAAAEMIEKAIAANPTYA-------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (921)
Q Consensus 382 g~~~~A~~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~ 444 (921)
++|.+|+..|++.....-++. ..++.-|.|+.-..+.-.+...+++..+++|...+.+.-.++
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 999999999999887755553 345667788888899999999999999999998877655433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-05 Score=67.92 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 002443 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYR 413 (921)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~ 413 (921)
-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... ..++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456777788888999999999999988888999999999999999999999999998885543 357888899999
Q ss_pred HcCCHHHHHHHHHHHhhcCCC
Q 002443 414 DAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 414 ~~g~~~~A~~~~~~al~l~P~ 434 (921)
.+|+-+.|...|+.+-++-..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 999999999999998887554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.012 Score=65.91 Aligned_cols=345 Identities=10% Similarity=-0.054 Sum_probs=221.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHH
Q 002443 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI-LYKDEGRLVEAAESYHK 141 (921)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 141 (921)
..+.+...|...+...|.....|...|..-.+.|..+.+.+.|++++.--|-+...|..+-. +-...|+.+.-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34667778888888999999999999999999999999999999999999988777765443 33456777787888888
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHH
Q 002443 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYE 215 (921)
Q Consensus 142 al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~ 215 (921)
|......+-.+. ..+-..-.....++++..-...|++.++.--.....++..=.-+.+. ...+++...-.
T Consensus 140 A~~~vG~dF~S~----~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSD----PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhcc----HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 887765533221 11222223335567778888888888775333222222211111111 11222222111
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHH
Q 002443 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIA-CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (921)
Q Consensus 216 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~ 294 (921)
..... ......+...+-.+ ..+..-...+........+.......-.++.......+.+..++..+.
T Consensus 216 ~~~~~------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 216 DVAER------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred hHHhh------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 11100 00000001111111 111111111111111111222222222233333344555555555553
Q ss_pred h-----CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Q 002443 295 Y-----NWH---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-P 365 (921)
Q Consensus 295 ~-----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p 365 (921)
. .|. ....|......-...|+++.....|++++--.....+.|...+......|+.+-|...+..+.++. |
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 3 222 234567777777889999999999999999888889999999999999999999999999988874 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002443 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (921)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (921)
..+.+...-+..-...|++..|...|++..+..|+..++-........++|+.+.+..
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 6677888888888889999999999999999889999988888899999999998884
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0015 Score=64.95 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=146.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhh
Q 002443 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (921)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 274 (921)
...|.+....|+..+.+.-+...... ...+-.........+..++.+++-+. .+.+.+..
T Consensus 126 ~lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~-------------~Vmy~~~~ 185 (366)
T KOG2796|consen 126 ILHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLG-------------RVMYSMAN 185 (366)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH-------------HHHHHHHH
Confidence 34466677778887777766655322 11222223333334556666665432 23333444
Q ss_pred hhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHc
Q 002443 275 KVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDR 347 (921)
Q Consensus 275 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~ 347 (921)
++.-.+.|.-....+.+.++.+ +..+.....+|.+.++.|+.+.|..+++..-+.. .....+..+.+.++.-.
T Consensus 186 ~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~ 265 (366)
T KOG2796|consen 186 CLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQ 265 (366)
T ss_pred HHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecc
Confidence 4455678999999999999988 6678889999999999999999999999654432 23456777888999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 002443 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLY 412 (921)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~ 412 (921)
+++.+|...|.+++..+|.++.+.++.|.|+.-.|+..+|++.++.+++..|... ...++|-.+|
T Consensus 266 nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 266 NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999742 3444444443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00017 Score=78.78 Aligned_cols=100 Identities=25% Similarity=0.326 Sum_probs=89.8
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 344 YKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (921)
Q Consensus 344 ~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (921)
....|+...|++++..|+...|.... ...+||.++.+-|-..+|-..+.+++.+....+-.++.+|.+|..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34568999999999999999887544 67899999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHhhHH
Q 002443 423 DAYEQCLKIDPDSRNAGQNRL 443 (921)
Q Consensus 423 ~~~~~al~l~P~~~~a~~~~l 443 (921)
+.|++|++++|+++.....+.
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHH
Confidence 999999999999987766543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.043 Score=65.51 Aligned_cols=410 Identities=15% Similarity=0.060 Sum_probs=242.5
Q ss_pred cchHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---C
Q 002443 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--NV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (921)
Q Consensus 46 ~~~~~~l~~a~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (921)
.++...+.+|.+++ ...++++|...+++++..... -. .+.+.++.++.+.+... |+..+++.++.... .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 47888999999998 678999999999999876533 22 34566788888888777 99999999987544 2
Q ss_pred HH-HHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--
Q 002443 116 AC-AHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-- 188 (921)
Q Consensus 116 ~~-~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-- 188 (921)
.. ..+.+ ...+...+++..|++.++....... .+... ...+....+.+....+..+++++.++++.....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 22 22222 2333334799999999999988764 33322 222344445666777888888888887744311
Q ss_pred ----C----CHHHHHHHH--HHHHHcCCHHHHHHHHHHH---HHh---CC---C---C----------------------
Q 002443 189 ----H----YAPAYYNLG--VVYSELMQYDTALGCYEKA---ALE---RP---M---Y---------------------- 224 (921)
Q Consensus 189 ----~----~~~~~~~la--~~~~~~g~~~~A~~~~~~a---l~~---~p---~---~---------------------- 224 (921)
+ ...++..+- .++...|+++.+...+++. ++. .+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 1 233344333 3455677777776665544 221 11 0 0
Q ss_pred --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH-----------------HHH--HHHHHHHHhhhhhhh
Q 002443 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----------------IAK--NNMAIALTDLGTKVK 277 (921)
Q Consensus 225 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~--~~la~~~~~lg~~~~ 277 (921)
.-++..-|......+..++|.++++++++.-.+.. ..+ .....++..++....
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11334445666777877799999888876422211 111 112334445556666
Q ss_pred hcCCHHHHHHHHHHHHHhCC---C------CHHHHHHHHHHHHHcCChHHHHHHHH--------HHHhhCCCC---HHHH
Q 002443 278 LEGDINQGVAYYKKALYYNW---H------YADAMYNLGVAYGEMLKFDMAIVFYE--------LAFHFNPHC---AEAC 337 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~---~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~---~~~~ 337 (921)
..+++.+|....+.+..... . .+..++..|..+...|+.+.|...|. .+....+.+ .-+.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 78899999888887775532 2 36678999999999999999999998 333333333 2344
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhC-C--CC--
Q 002443 338 NNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQ-----SLNNLGVVYT--VQGKMDAAAEMIEKAIAAN-P--TY-- 401 (921)
Q Consensus 338 ~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~l~~al~~~-p--~~-- 401 (921)
.++..++...+.-.. +.+.+++.-....+... ++..+-.++. ..-...++...+.++++.. . ++
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 566677766554333 33333322221111111 2222222221 1223457777777777654 1 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hhhHhhH----HHHhhhccCCChHHHHHH
Q 002443 402 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINEGHDDKLFEA 460 (921)
Q Consensus 402 --~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~~----l~a~~~~~~~~~~~~~~~ 460 (921)
.-++..++..+. .|+..+..+...++.++.... ....+.. ++...+...|+.+++-..
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~ 599 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEA 599 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 234555666665 788888777777776654443 4433321 122224455666554433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0008 Score=66.24 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002443 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 230 (921)
+..|..-+..+...+++++|...+.++.+-..++ +.++-..+.+..++..+.++..+++++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------ 98 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------ 98 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------------
Confidence 4445555666666677777777777766543332 2233333444444444455554444442
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 002443 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMY 304 (921)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~ 304 (921)
..|.+.|..+.|...++++-+.-. ..+.++|+++|++++..-... .+.+.
T Consensus 99 --~lY~E~GspdtAAmaleKAak~le----------------------nv~Pd~AlqlYqralavve~~dr~~ma~el~g 154 (308)
T KOG1585|consen 99 --ELYVECGSPDTAAMALEKAAKALE----------------------NVKPDDALQLYQRALAVVEEDDRDQMAFELYG 154 (308)
T ss_pred --HHHHHhCCcchHHHHHHHHHHHhh----------------------cCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 334445555555554444433221 235566666666665443221 12344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002443 305 NLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (921)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (921)
..+.++.+..++++|-..+.+-... .++.-..+.....++....+|..|.++++...++
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 4455556666666655554443221 1122223333333344444555555555554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00078 Score=63.48 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=104.4
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHhHHHHHHHHHHHHHHHHHcCC
Q 002443 94 MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGN 172 (921)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~ 172 (921)
+.=+.+.......+.+...|.. .-.+.+|..+...|++.+|...|++++.- ...+.. ++..+++..+..++
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-------~lLglA~Aqfa~~~ 139 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-------MLLGLAQAQFAIQE 139 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-------HHHHHHHHHHhhcc
Confidence 3334455555555555555543 34567788888888888888888887753 222222 35566666777788
Q ss_pred hHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002443 173 TQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 173 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
+..|...+++..+.+|. .++....+|..+...|++.+|...|+.++...|+ +.+....+..+.++|+..+|...+..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 88888888888877765 4666777888888888888888888888888776 66777778888888887777766555
Q ss_pred HHH
Q 002443 251 CLA 253 (921)
Q Consensus 251 al~ 253 (921)
..+
T Consensus 219 v~d 221 (251)
T COG4700 219 VVD 221 (251)
T ss_pred HHH
Confidence 443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00047 Score=67.81 Aligned_cols=198 Identities=22% Similarity=0.189 Sum_probs=109.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (921)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 307 (921)
|..-+..|...+++++|..++.++.+-..++. .++.-+..+...+.+......+.++..+++++.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs-------------- 98 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------- 98 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------
Confidence 33344555556666666666666665443332 233334444444444444556666666666664
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 002443 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (921)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 381 (921)
..|.+.|..+.|-..++++-+. .+..+.++|+++|++++.+-... .+.+...+.++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 3455556655555555554332 23345666666666666553221 23455566677777
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCCChhhHhhHHHHhhhccC
Q 002443 382 GKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINE 451 (921)
Q Consensus 382 g~~~~A~~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~~l~a~~~~~~ 451 (921)
.++++|-..+.+-... .++....+.....+|....+|..|..+|+...++ .|++..+..|++- ....
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---ayd~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---AYDE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---Hhcc
Confidence 7777776666554332 2333445555556666677888888888877664 3444555555433 2345
Q ss_pred CChHHHH
Q 002443 452 GHDDKLF 458 (921)
Q Consensus 452 ~~~~~~~ 458 (921)
++.++.-
T Consensus 241 gD~E~~~ 247 (308)
T KOG1585|consen 241 GDIEEIK 247 (308)
T ss_pred CCHHHHH
Confidence 5555443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=72.69 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002443 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD---KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (921)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 392 (921)
|+.|.+.++.....+|.+++.+++.|.++..+.++. ++.+ -+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 556666666666667777776666666665543221 1111 1233444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHhhcCCCChhhHhhH
Q 002443 393 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
+++.++|+..++++.+|.+|..++ .+++|.++|++|.+.+|++...+..+
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 444555555555555555544332 36788999999999999987666554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00022 Score=62.95 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCG 123 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 123 (921)
...+-..|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+..+|+.++|++.+++++++.-.. -.++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 34566678889999999999999999999999999999999999999999999999999999985443 35788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002443 124 ILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
.+|...|+.+.|...|+.+-++....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999998876553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0043 Score=70.92 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=116.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHH-H------HHHHHHHHH----HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 278 LEGDINQGVAYYKKALYYNWHYAD-A------MYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~-~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (921)
-.|+-+.++..+.++.+...-... + |+.....+. .....+.|.+.++...+..|+..-.++..|+++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 468999999999998763221111 1 111111111 24467889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCH---
Q 002443 347 RDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSI--- 418 (921)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~--- 418 (921)
.|+.++|++.|++++...... .-.++.+++++..+.+|++|.+++.+..+.+.-. +-..+..|.++...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 999999999999988543332 3367889999999999999999999999875543 44567788899999999
Q ss_pred ----HHHHHHHHHHhhc
Q 002443 419 ----SLAIDAYEQCLKI 431 (921)
Q Consensus 419 ----~~A~~~~~~al~l 431 (921)
++|.++|+++-.+
T Consensus 360 ~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 7777777766444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.03 E-value=9e-06 Score=68.09 Aligned_cols=73 Identities=27% Similarity=0.378 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002443 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (921)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (921)
+-..++..+|.+|..+|++++|+.+|++++++.....+....++.++.++|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999998743333344456778888888888888888888888888764
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0025 Score=72.93 Aligned_cols=166 Identities=13% Similarity=-0.000 Sum_probs=123.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhh--hh-h--hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002443 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT--KV-K--LEGDINQGVAYYKKALYYNWHYADAMYN 305 (921)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~--~~-~--~~~~~~~A~~~~~~al~~~~~~~~~~~~ 305 (921)
+-.+.--.|+-+.+++.+.++.+ ..+-......+....+...- .. . .....+.|.+.++...+..|+..-.++.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 33444456899999999999877 33322222222222211111 11 1 3567899999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 002443 306 LGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTV 380 (921)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 380 (921)
.|.++...|+.++|++.|++++..... ..-.++.++.++..+.+|++|..++.+..+.+.-. .-..+..|.++..
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 999999999999999999998853322 24567899999999999999999999999875543 3455677888999
Q ss_pred cCCH-------HHHHHHHHHHHHh
Q 002443 381 QGKM-------DAAAEMIEKAIAA 397 (921)
Q Consensus 381 ~g~~-------~~A~~~l~~al~~ 397 (921)
.++. ++|.+++.++-.+
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHH
Confidence 9998 7777777776554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0029 Score=70.95 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002443 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
.++++..++..+...|++++|-+.|-++++++.-+
T Consensus 994 ~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 994 MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred CccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 35678888888888888888888888888887654
|
|
| >COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00024 Score=78.19 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=122.1
Q ss_pred EEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcc
Q 002443 661 TFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 738 (921)
Q Consensus 661 ~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 738 (921)
.+.++++ ..|..+.+++....+....|+..+++.|.+... ...+...+.+.+.. +.|.|.|.++ ..+....+.
T Consensus 201 ~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~ 275 (381)
T COG0438 201 VVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER---REELEKLAKKLGLE-DNVKFLGYVP-DEELAELLA 275 (381)
T ss_pred EEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc---HHHHHHHHHHhCCC-CcEEEecccC-HHHHHHHHH
Confidence 4444444 368888999999998888887788888765322 34455566666764 7899988876 356666788
Q ss_pred cccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC-CHHHHHHHHHHHhcCHHHHHH
Q 002443 739 LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK-NEDEYVQLALQLASDVTALAN 814 (921)
Q Consensus 739 ~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~i~~-~~~~y~~~a~~l~~d~~~~~~ 814 (921)
.+|+++-|+.+ +.|.+.+|||++|+|||+ ++++ ..++..-+..-++.. +.++.......+..+.+.+..
T Consensus 276 ~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~-------~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~ 348 (381)
T COG0438 276 SADVFVLPSLSEGFGLVLLEAMAAGTPVIA-------SDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREE 348 (381)
T ss_pred hCCEEEeccccccchHHHHHHHhcCCcEEE-------CCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHH
Confidence 89999999876 778889999999999997 4443 112222210113333 579999999999999866677
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002443 815 LRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 815 ~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 847 (921)
+....++... ..|++..++..+.+.|.....
T Consensus 349 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 349 LGEAARERVE--EEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHh
Confidence 7664444443 458999999888888876543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=67.48 Aligned_cols=74 Identities=30% Similarity=0.499 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh
Q 002443 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (921)
Q Consensus 222 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 295 (921)
|+...++.++|.+|..+|++++|+.+|++++++..........++.++..+|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34467889999999999999999999999997732222233345666667776666677777777777666653
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.013 Score=62.51 Aligned_cols=131 Identities=21% Similarity=0.087 Sum_probs=103.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChHhHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhh----CC---C-------
Q 002443 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DP---H------- 189 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p---~------- 189 (921)
...+|+++.|..++.|+-... ..++.....++.++++.|......+ ++++|..+++++.+. .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999997766 5566777789999999999999999 999999999999887 21 1
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 002443 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (921)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (921)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1456778888998887754 455566666667788788876666677678889999999998887644
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0016 Score=70.98 Aligned_cols=187 Identities=17% Similarity=0.102 Sum_probs=111.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 002443 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (921)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (921)
....-+..+.++-++.-+++++.+|+.+.+|..++.- ......+|.++|+++++...... .........|..-+
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~e 248 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchhh
Confidence 4444566777777888888888888877777777653 23345677777777776432111 11111111111111
Q ss_pred HHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 002443 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALG 212 (921)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~ 212 (921)
.+.....+. +..+-..++.+..+.|+.++|++.++..++.+|. +..++.+|..++...+.|.++..
T Consensus 249 -------~~~~Rdt~~-----~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 249 -------AWHRRDTNV-----LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred -------hhhccccch-----hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 111111111 1223456788888888888888888888887665 45678888888888888888888
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHC-CC---------------HHHHHHHHHHHHHhCCChH
Q 002443 213 CYEKAALE-RPMYAEAYCNMGVIYKNR-GD---------------LESAIACYERCLAVSPNFE 259 (921)
Q Consensus 213 ~~~~al~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~al~~~p~~~ 259 (921)
.+.+.-++ -|+.....+..+.+..+. ++ -..|.+.+.+|++.+|.-+
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 88875433 245555555555443321 11 1235666777777777654
|
The molecular function of this protein is uncertain. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.9e-05 Score=69.77 Aligned_cols=110 Identities=25% Similarity=0.242 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-
Q 002443 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK---LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF- 316 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~- 316 (921)
++.|.+.++.....+|.+.+.+.+-+.++..++.... ...-+++|+.-|++++.++|+..++++++|.+|...+.+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3455555555555566665555555555555554322 223567888888899999999999999999888766531
Q ss_pred ---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002443 317 ---DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (921)
Q Consensus 317 ---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 377 (921)
.+|. ..|++|..+|++|...+|++......|..+
T Consensus 87 ~d~~~A~---------------------------~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAE---------------------------EYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHH---------------------------HHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHH---------------------------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1111 124556666677777766665555444433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.1e-05 Score=75.68 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=95.8
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 45 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
+.....+-..|+.++...+|..|+..|.++|..+|..+..+.+.+.|+++..+++.+.....++++++|+...+++.+|.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 34677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 002443 125 LYKDEGRLVEAAESYHKALSA 145 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~ 145 (921)
.......+++|+..+.++..+
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999665
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.085 Score=63.00 Aligned_cols=316 Identities=14% Similarity=0.013 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCC
Q 002443 98 GRLAFDSFSEAVKLDP----QNACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (921)
Q Consensus 98 ~~~A~~~~~~al~~~p----~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~ 172 (921)
...|+.+++-+++..+ ..+.+.+.+|.+++ ...+++.|..++++++.+..+ .......-.+...++.++.+.+.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCH
Confidence 3557888888875322 13567889998887 789999999999999888765 22222233445556788888777
Q ss_pred hHHHHHHHHHHHhhCCC---C-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHCCC
Q 002443 173 TQDGIQKYYEALKIDPH---Y-APAYYNL--GVVYSELMQYDTALGCYEKAALER--PMYAEA----YCNMGVIYKNRGD 240 (921)
Q Consensus 173 ~~~A~~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~ 240 (921)
.. |...+++.++.... . ....+.+ ...+...+++..|++.++...... ..++.+ ....+.+....+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 77 99999999887544 1 2222222 333333479999999999988765 344332 3334666777788
Q ss_pred HHHHHHHHHHHHHhCCC------h----HHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHH---HHhCCCC--------
Q 002443 241 LESAIACYERCLAVSPN------F----EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA---LYYNWHY-------- 299 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~------~----~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~a---l~~~~~~-------- 299 (921)
.+++++..+++...... . ..++..+..+. .....|+++.+...+++. ++...+.
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~-----~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~ 269 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLC-----CSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDE 269 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCC
Confidence 88888888887543221 1 11222222111 223345555554444332 2211000
Q ss_pred ------------------H-------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------C--------
Q 002443 300 ------------------A-------------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-------C-------- 333 (921)
Q Consensus 300 ------------------~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~-------- 333 (921)
. -+|..-|......+..++|.++++++++.-.+ .
T Consensus 270 d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~ 349 (608)
T PF10345_consen 270 DGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEA 349 (608)
T ss_pred CeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHH
Confidence 0 12334455666677777888888887764110 0
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH-
Q 002443 334 -----------AEACNNLGVIYKDRDNLDKAVECYQMALSIK---PN------FSQSLNNLGVVYTVQGKMDAAAEMIE- 392 (921)
Q Consensus 334 -----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~l~- 392 (921)
.......+.+..-.+++.+|....+.+.+.. |. .+..++..|..+...|+.+.|+.+|.
T Consensus 350 ~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 350 SERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 1233455666677888888888888776553 21 25577888888888899999999997
Q ss_pred -------HHHHhCCCC---HHHHHHHHHHHHHcCCHHH
Q 002443 393 -------KAIAANPTY---AEAYNNLGVLYRDAGSISL 420 (921)
Q Consensus 393 -------~al~~~p~~---~~~~~~la~~~~~~g~~~~ 420 (921)
.+....+.. .-+..++..++...+....
T Consensus 430 ~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 430 PRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred hHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 222333332 2244566667666555333
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.011 Score=65.55 Aligned_cols=293 Identities=13% Similarity=0.071 Sum_probs=148.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 002443 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------PQNACAHTHCGILY 126 (921)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~ 126 (921)
+.+....|+++.-....... ..+..+..+..+......++++++....+++...- +......+..-..+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 56667788888833332222 22234667777777778899998888888876541 11111111111112
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHhh----CCCCHHHHHHHHHH
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--DGIQKYYEALKI----DPHYAPAYYNLGVV 200 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~--~A~~~~~~al~~----~p~~~~~~~~la~~ 200 (921)
....+.+++..+....... ......+...+...-.. ...+++ +-+-.++..+-. .......+...+.+
T Consensus 82 q~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred hHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 2223333333333211100 11111111111111000 011111 111111222211 34457788999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH-H--HHHHHHHHHHhhh
Q 002443 201 YSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-I--AKNNMAIALTDLG 273 (921)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~--~~~~la~~~~~lg 273 (921)
..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+....... . ....+...+..
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE-- 233 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc--
Confidence 9999999999999999887542 2567888899999999999999999988887211110 0 00000000000
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002443 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (921)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (921)
.............. ......++..+|...... +..+++...|.++.+.+|....++..+|..+...
T Consensus 234 ---~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 234 ---SLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ---ccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00000000000000 000123444455555444 5566666666666666666666666655554332
Q ss_pred C-----------------CHHHHHHHHHHHHhhCCC
Q 002443 348 D-----------------NLDKAVECYQMALSIKPN 366 (921)
Q Consensus 348 g-----------------~~~~A~~~~~~al~~~p~ 366 (921)
= -...|+..|-+++...+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 306 LESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 1 124588899999988877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.01 Score=69.53 Aligned_cols=81 Identities=25% Similarity=0.301 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHH
Q 002443 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLA 421 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A 421 (921)
+...+...+.++.. ..+..+...+|.+|+.- .+++.|...|.++.... +...+++|.++..- ..+..|
T Consensus 454 ~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred chhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHH
Confidence 44455555555443 34566667777776653 35777888887777766 77777888777641 126778
Q ss_pred HHHHHHHhhcCCC
Q 002443 422 IDAYEQCLKIDPD 434 (921)
Q Consensus 422 ~~~~~~al~l~P~ 434 (921)
.++|.++.+.+.+
T Consensus 529 ~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 529 KRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHhcCch
Confidence 8888877776654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0087 Score=61.72 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHhHHHHHHHHH
Q 002443 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLT 161 (921)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~ 161 (921)
+-....+......|+..+|-..+++.++..|.+.-++..--.+++.+|+...-...+++++.. +++.+-. ..+.-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~----sYv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY----SYVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH----HHHHH
Confidence 444556667788899999999999999999999988888888999999999999999999877 6654432 22334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 002443 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKN 237 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 237 (921)
.++-.+...|-+++|.+.-++++++++.+..+...++.++...|++.++.+...+.-..-... ..-|...+.++.+
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 456667788999999999999999999999999999999999999999999988754322211 2235566888889
Q ss_pred CCCHHHHHHHHHHHH
Q 002443 238 RGDLESAIACYERCL 252 (921)
Q Consensus 238 ~g~~~~A~~~~~~al 252 (921)
.+.|+.|++.|.+-+
T Consensus 260 ~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 GAEYEKALEIYDREI 274 (491)
T ss_pred ccchhHHHHHHHHHH
Confidence 999999999998654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.017 Score=67.83 Aligned_cols=176 Identities=23% Similarity=0.228 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC---
Q 002443 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG--- 130 (921)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 130 (921)
..+|.++++.+-+. .+..+...+|.++..- .+.+.|+.+|+.+.+. ...++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788888887654 5788888999998754 5899999999999771 1125567888999998743
Q ss_pred --CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-
Q 002443 131 --RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL- 204 (921)
Q Consensus 131 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 204 (921)
+...|..+|.++-+....+ + .+.+|.++.... +...|.++|..+... .+..+.+.++.+|..-
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~--a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD--A-------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch--H-------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCC
Confidence 6788999999998775443 3 445555555433 678999999888754 4678888898888753
Q ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh
Q 002443 205 ---MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (921)
Q Consensus 205 ---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (921)
.+...|..+++++.+.. .+.+...++..+... ++++.+...+....+.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 57889999999998887 455555666555443 7777776666554443
|
|
| >TIGR01426 MGT glycosyltransferase, MGT family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00062 Score=76.91 Aligned_cols=164 Identities=13% Similarity=0.173 Sum_probs=105.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
+..++|.++.+.....+..++...+.+...|--.++..+.+.. ...+ . .+ +++|.+.+.++ ..+ .
T Consensus 224 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~----~~~~----~--~~-~~~v~~~~~~p-~~~---l 288 (392)
T TIGR01426 224 GRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD----PADL----G--EL-PPNVEVRQWVP-QLE---I 288 (392)
T ss_pred CCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC----hhHh----c--cC-CCCeEEeCCCC-HHH---H
Confidence 4557788888877777777776667777666545555443311 1111 1 13 47888888876 334 4
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHHHHH
Q 002443 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 737 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~---~~~~~y~~~a~~l~~d~~~~~ 813 (921)
+..||+++- .+|..|++|||.+|+|+|.++...- ...-+..+...|....+- -+.++..+...++..|++.++
T Consensus 289 l~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~ 364 (392)
T TIGR01426 289 LKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGAD-QPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAE 364 (392)
T ss_pred HhhCCEEEE---CCCchHHHHHHHhCCCEEecCCccc-HHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHH
Confidence 556999992 4666799999999999999885432 333445566778765553 256778888888999987666
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002443 814 NLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 814 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 842 (921)
.+ +.+++.+... ......+..+|+.+
T Consensus 365 ~~-~~l~~~~~~~--~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 365 RL-RKMRAEIREA--GGARRAADEIEGFL 390 (392)
T ss_pred HH-HHHHHHHHHc--CCHHHHHHHHHHhh
Confidence 65 3344444322 24556666666654
|
This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.027 Score=66.01 Aligned_cols=280 Identities=17% Similarity=0.133 Sum_probs=142.4
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChH
Q 002443 95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174 (921)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 174 (921)
.++.+.|.++.++. +.+..|..+|.+..+.|...+|++.|-++ -+|. . |...-....+.|.|+
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika--dDps---~-------y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPS---N-------YLEVIDVASRTGKYE 1150 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcH---H-------HHHHHHHHHhcCcHH
Confidence 34444444444433 34556666666666666666666666543 1222 1 334444445556666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 002443 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (921)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (921)
+-+.++.-+-+... .+.+-..|...|.+.++..+-.+.+ ..|+.+. ....|.-.+..+.|+.|.-+|...-
T Consensus 1151 dLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~vS-- 1221 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNVS-- 1221 (1666)
T ss_pred HHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHHhh--
Confidence 66665555443311 1112223333444445444433322 1233322 2344555555556665555544321
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002443 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334 (921)
Q Consensus 255 ~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 334 (921)
.+..++..+..+ |+|+.|.+..+++ ++...|...+.++...+.+.-|.-+=-.. --++
T Consensus 1222 ------N~a~La~TLV~L-------geyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~i----ivha 1279 (1666)
T KOG0985|consen 1222 ------NFAKLASTLVYL-------GEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNI----IVHA 1279 (1666)
T ss_pred ------hHHHHHHHHHHH-------HHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceE----EEeh
Confidence 222333333333 3566666655554 23445555555555555554432211000 0124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Q 002443 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYN 406 (921)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~ 406 (921)
+-+-.+...|...|-+++-+..++.++.+...+-..+..||.+|.+- ++++-.+.++-.... .-+.+..|.
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ 1358 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWS 1358 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 44556777788888888888888888888777777777777777654 455555554433221 112244566
Q ss_pred HHHHHHHHcCCHHHHHH
Q 002443 407 NLGVLYRDAGSISLAID 423 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~ 423 (921)
.+..+|.+-..|+.|.-
T Consensus 1359 ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1359 ELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHhhhhhhHHHH
Confidence 66667766666665543
|
|
| >cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.6e-05 Score=84.88 Aligned_cols=110 Identities=14% Similarity=0.034 Sum_probs=72.5
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCC----cccc--------cCCHHHH
Q 002443 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL----KHLI--------AKNEDEY 798 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl----~~~i--------~~~~~~y 798 (921)
++...+..||+++=|+-| +.|.|.+|||+||+||||-....|.. .+-..+|- .-+| ..+.++.
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~----~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGC----FMEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhh----hhHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 466667889999999988 66999999999999999943332211 11111121 1122 3456677
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002443 799 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 799 ~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 847 (921)
.+...++++. +.++.+.++-+.. ..+..|+++.++..+.+||+.+.+
T Consensus 543 a~~m~~~~~~-~~r~~~~~r~~~~-r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 543 TQYMYEFCQL-SRRQRIIQRNRTE-RLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhh
Confidence 7777777754 4455555443311 125789999999999999987754
|
GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0016 Score=66.83 Aligned_cols=152 Identities=13% Similarity=-0.041 Sum_probs=118.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHH
Q 002443 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKA 353 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A 353 (921)
..|++.+|....++.++..|.+.-++..--.+++.+|+.+.-...+++++.. +++. ..+.-.++..+...|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3577788888888888888888777777777888888888888888888876 5555 44555677778888999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002443 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (921)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (921)
.+..++++++++.+..+...++.++...|+++++.+...+.-..-... ..-|...|.++.+.+.|+.|++.|.+-+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 999999999999988888889999999999999988877654332211 1235567788888899999999887654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00053 Score=72.94 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (921)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (921)
+|..+.....+.+..+.|...|.++.+..+....+|...|.+... .++.+.|.+.|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 466666777777778999999999986666678888888988766 5666669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002443 381 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 381 ~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
.|+.+.|...|++++..-+... .+|......-...|+.+...+..+++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998866544 5788888888899999999999999999988843
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR03492 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00029 Score=78.97 Aligned_cols=142 Identities=16% Similarity=0.191 Sum_probs=93.1
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC-------------CEEEccCcCCcHHHHH
Q 002443 669 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-------------RVDLLPLILLNHDHMQ 735 (921)
Q Consensus 669 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~-------------rv~~~~~~~~~~~~~~ 735 (921)
.+.-|.++++..++.+. |+.++++...+. ...+.+.+.+.+.|+... .+.+.+. ..+...
T Consensus 220 ~~~lp~~l~al~~L~~~-~~~~~v~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~ 292 (396)
T TIGR03492 220 YRNLKLLLRALEALPDS-QPFVFLAAIVPS---LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAE 292 (396)
T ss_pred HccHHHHHHHHHHHhhC-CCeEEEEEeCCC---CCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHH
Confidence 34446888888777665 777777654221 223445555666676532 2444433 345667
Q ss_pred hcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhc----CCcccc-cCCHHHHHHHHHHHhcCHH
Q 002443 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV----GLKHLI-AKNEDEYVQLALQLASDVT 810 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~----gl~~~i-~~~~~~y~~~a~~l~~d~~ 810 (921)
.|..||++|-. .||+|.|++.+|+|+|..+++.+ ...+.++... |-...+ -.+.+...+...+|..|++
T Consensus 293 ~l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 293 ILHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred HHHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHH
Confidence 78889999955 55666999999999999996543 2355555542 433333 4556888888889999998
Q ss_pred HHHHHHHHHHHHh
Q 002443 811 ALANLRMSLRDLM 823 (921)
Q Consensus 811 ~~~~~r~~~~~~~ 823 (921)
.+.++++..+.++
T Consensus 367 ~~~~~~~~~~~~l 379 (396)
T TIGR03492 367 LLERCRRNGQERM 379 (396)
T ss_pred HHHHHHHHHHHhc
Confidence 8888876555544
|
This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown. |
| >TIGR02919 accessory Sec system glycosyltransferase GtfB | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00074 Score=75.92 Aligned_cols=222 Identities=13% Similarity=0.174 Sum_probs=130.3
Q ss_pred HHhCCccEEEecCCCCCCCchhhhhc-CCCceEEeeccCCCCCCCC-CccEEEe-----cCCCCCCCc-----ccCc--c
Q 002443 562 VREDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTGLP-TIDYRIT-----DSLADPPET-----KQKH--V 627 (921)
Q Consensus 562 i~~d~idiLvdl~g~t~~~r~~~~a~-r~ApvQ~~~~G~p~ttG~~-~~Dy~i~-----d~~~~p~~~-----~~~~--~ 627 (921)
+..+.-+|+|. +..+.-+.++.+ .||+.=+.| .-|.++-++ .|.|.+. |.++.|-.. ...+ .
T Consensus 186 l~~~~~~i~i~---~l~~~~~~~~~~~~~~~~~l~~-qe~~~~~l~~ny~~~l~~~~~~~~iIv~T~~q~~di~~r~~~~ 261 (438)
T TIGR02919 186 LEINLSHIFIN---SLSTPFLVSYGLPEDGSDVLFW-QEPITDDIPGNMKLLLDNETRNKKIIIPNKNEYEKIKELLDNE 261 (438)
T ss_pred hcCCCCCEEEE---ecCchHHHHhhcCCCCceEEEE-eCccCCcCchHHHHHhcCccccCeEEeCCHHHHHHHHHHhCcc
Confidence 33556677776 223222244443 345544444 666544443 2333331 223333211 1112 3
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 002443 628 EELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 707 (921)
Q Consensus 628 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~ 707 (921)
+++...|..++ |.++. ....+...++++ +...++.+.++.+++|+..|-|.... .+..+|
T Consensus 262 ~~~~~ip~g~i-~~~~~-------~~r~~~~~l~~t--------~s~~I~~i~~Lv~~lPd~~f~Iga~t----e~s~kL 321 (438)
T TIGR02919 262 YQEQISQLGYL-YPFKK-------DNKYRKQALILT--------NSDQIEHLEEIVQALPDYHFHIAALT----EMSSKL 321 (438)
T ss_pred cCceEEEEEEE-Eeecc-------ccCCcccEEEEC--------CHHHHHHHHHHHHhCCCcEEEEEecC----cccHHH
Confidence 45566776655 43211 111233445555 28999999999999999999993222 223566
Q ss_pred HHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcC
Q 002443 708 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG 786 (921)
Q Consensus 708 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~g 786 (921)
.+. ++. +.|+..|... ..+.-..|..||++||+... +.+.+..||+..|+|||+..-..+...... .
T Consensus 322 ~~L-~~y----~nvvly~~~~-~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~------~ 389 (438)
T TIGR02919 322 MSL-DKY----DNVKLYPNIT-TQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIA------S 389 (438)
T ss_pred HHH-Hhc----CCcEEECCcC-hHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCccccc------C
Confidence 555 555 4444444433 34677899999999999998 557799999999999998654433221110 0
Q ss_pred Ccccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002443 787 LKHLI-AKNEDEYVQLALQLASDVTALANLRMSLR 820 (921)
Q Consensus 787 l~~~i-~~~~~~y~~~a~~l~~d~~~~~~~r~~~~ 820 (921)
..++ ..+.++++++.+.+.+|++.++..-.+-|
T Consensus 390 -g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~ 423 (438)
T TIGR02919 390 -ENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQR 423 (438)
T ss_pred -CceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2222 46889999999999999975554444333
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. |
| >COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=73.22 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=106.7
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002443 655 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 655 ~~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
..+..++|-++.+..=. .+++....+.+...|..+++-.+. . +. ...++ ++.+...+.++ +.+
T Consensus 234 ~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~-----~~------~~~~~-p~n~~v~~~~p-~~~-- 296 (406)
T COG1819 234 PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-A-----RD------TLVNV-PDNVIVADYVP-QLE-- 296 (406)
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-c-----cc------ccccC-CCceEEecCCC-HHH--
Confidence 34456667777655422 677777777777776555444432 1 00 11234 47888888876 344
Q ss_pred HhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHHH
Q 002443 735 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 811 (921)
Q Consensus 735 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~---~~~~~y~~~a~~l~~d~~~ 811 (921)
.+..+|+++ ..||++||.|||..|||+|.+|+. +-.-.-|.-+..+|....+- .+.+.-.+...++.+|...
T Consensus 297 -~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 297 -LLPRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred -HhhhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 555599999 247888999999999999999976 33333566677889987775 5667777777777888766
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 812 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 812 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
+++.+. +.+.+... ...+..+..+|+..++
T Consensus 372 ~~~~~~-~~~~~~~~--~g~~~~a~~le~~~~~ 401 (406)
T COG1819 372 RRAAER-LAEEFKEE--DGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHH-HHHHhhhc--ccHHHHHHHHHHHHhc
Confidence 655443 44443322 3355677777776643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.026 Score=62.64 Aligned_cols=138 Identities=13% Similarity=0.175 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-C----
Q 002443 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP-N---- 366 (921)
Q Consensus 297 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~---- 366 (921)
......+...+.+..+.|+++.|...+.++...++ ..+.+....+.++...|+..+|+..++..++. .. .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34566788899999999999999999998887642 24678888899999999999999988888771 00 0
Q ss_pred ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 367 ----------------------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (921)
Q Consensus 367 ----------------------------~~~~~~~la~~~~~~------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 412 (921)
.+.++..+|...... +..+++++.|+++++.+|+...+++.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 123555666666666 7788888888888888888888888888776
Q ss_pred HHcCCH-----------------HHHHHHHHHHhhcCCC
Q 002443 413 RDAGSI-----------------SLAIDAYEQCLKIDPD 434 (921)
Q Consensus 413 ~~~g~~-----------------~~A~~~~~~al~l~P~ 434 (921)
...=+. ..|+..|-+++.+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 554211 2356666666666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00052 Score=67.43 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhh
Q 002443 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
...+.|++.|+...|+|-++++.....+..+|++..+++..|.+....=+.++|...|.++|+++|.-..+...
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999987666554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.8e-05 Score=72.96 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=60.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002443 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (921)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (921)
-|..++...+|..|+.+|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|........++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 34445555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhc
Q 002443 420 LAIDAYEQCLKI 431 (921)
Q Consensus 420 ~A~~~~~~al~l 431 (921)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 666666666443
|
|
| >PLN02670 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0011 Score=75.40 Aligned_cols=172 Identities=12% Similarity=0.048 Sum_probs=108.8
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
..|+|-||.+...++++-++-.+.-|...|...||.+..+... +.+.+.+.++....| +++.+++| +.+
T Consensus 278 ~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG-----~vv~~W~P-Q~~ 351 (472)
T PLN02670 278 NSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRG-----MIHVGWVP-QVK 351 (472)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCC-----eEEeCcCC-HHH
Confidence 4578999999999999999999999999999999987642111 112234444433322 56667877 455
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCccccc-------CCHHHHHHHHH
Q 002443 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA-------KNEDEYVQLAL 803 (921)
Q Consensus 733 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~i~-------~~~~~y~~~a~ 803 (921)
.|+ ...+..|+ ..+|-+|++||+++|||+|++| ++.+ .-+.++...|+.--+. -+.++-.+...
T Consensus 352 IL~-H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~ 424 (472)
T PLN02670 352 ILS-HESVGGFL---THCGWNSVVEGLGFGRVLILFPVLNEQG---LNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVR 424 (472)
T ss_pred Hhc-Ccccceee---ecCCcchHHHHHHcCCCEEeCcchhccH---HHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHH
Confidence 443 33344466 3588889999999999999998 3432 2333445556654332 25677777777
Q ss_pred HHhcCHHHHHHHHHHH---HHHhhcCCCCChHHHHHHHHHHHHHH
Q 002443 804 QLASDVTALANLRMSL---RDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 804 ~l~~d~~~~~~~r~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~ 845 (921)
++..|++ -..+|++. ++.+... -.....+..+++.+..+
T Consensus 425 ~vm~~~~-g~~~r~~a~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 425 LAMVDDA-GEEIRDKAKEMRNLFGDM--DRNNRYVDELVHYLREN 466 (472)
T ss_pred HHhcCcc-hHHHHHHHHHHHHHHhCc--chhHHHHHHHHHHHHHh
Confidence 7776642 22334333 3333323 34667777777766543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.13 Score=60.64 Aligned_cols=211 Identities=14% Similarity=0.095 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 002443 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (921)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 268 (921)
+.+.+|..+|....+.|...+|++.|-++ +++..|.....+..+.|+|++-+.++..+-+...+.. ....+..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHH
Confidence 34677777777777778888887777664 5566777777777777888877777776665433211 11112222
Q ss_pred HHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002443 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (921)
Q Consensus 269 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (921)
|.. .++..+-.+.. ..|+.+ -....|.-++..+.|+.|.-+|.. ..-|..++..+...|
T Consensus 1176 yAk-------t~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1176 YAK-------TNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLG 1234 (1666)
T ss_pred HHH-------hchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHH
Confidence 222 22333322221 123322 234556667777777777766653 334566777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
+|..|...-++| ++...|-..+.++...+++.-|.-+=-..+ -.++-+-.+...|...|-+++-+..++.+
T Consensus 1235 eyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNII----VHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEE----EehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 777777777766 334455555555555444443322111000 11344555666677777777777777777
Q ss_pred hhcCCCC
Q 002443 429 LKIDPDS 435 (921)
Q Consensus 429 l~l~P~~ 435 (921)
+-+.--+
T Consensus 1306 LGLERAH 1312 (1666)
T KOG0985|consen 1306 LGLERAH 1312 (1666)
T ss_pred hchhHHH
Confidence 7665433
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0075 Score=66.49 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=94.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002443 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383 (921)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 383 (921)
..|..+...|+...|+.++..++...|.. .....++|.++.+.|-.-.|-.++.+++.+....+-.++.+|.++..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 34445566899999999999999988865 34577899999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (921)
Q Consensus 384 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 413 (921)
.+.|++.+++|++++|+++.+-..|-.+-.
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999888777666555
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0036 Score=68.38 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Q 002443 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLY 412 (921)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~~ 412 (921)
+...+|.+..+.|+.++|++.++..++..|. +..++.+|..++..++.|.++...+.+.-+. -|..+...+..|.+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3445666666777777777777776666554 3446666777777777777776666665332 244455555544433
Q ss_pred HH-------------cC---CHHHHHHHHHHHhhcCCCChhh
Q 002443 413 RD-------------AG---SISLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 413 ~~-------------~g---~~~~A~~~~~~al~l~P~~~~a 438 (921)
.+ .| -...|++...+|++.+|.-+..
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 22 11 1234788999999999987654
|
The molecular function of this protein is uncertain. |
| >PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00032 Score=60.79 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=64.5
Q ss_pred EEecCCCCC-CcccHHHHhhcCCcEEecCCCcccccc-hhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002443 742 ISLDTFPYA-GTTTTCESLYMGVPCVTMAGSVHAHNV-GVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSL 819 (921)
Q Consensus 742 v~Ld~~~~~-g~~t~~eal~~GvPvvt~~g~~~~~r~-~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~ 819 (921)
|+|.+..++ .+...+|+|++|+|||+ .+. +..-+-.-|..-+...|.++.+++...|.+|++.++.++++.
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~-------~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVIS-------DDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEE-------CChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 355655553 35589999999999998 333 111111114445667899999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHH
Q 002443 820 RDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~ 838 (921)
++.+.+. +++...+.++
T Consensus 74 ~~~v~~~--~t~~~~~~~i 90 (92)
T PF13524_consen 74 RERVLKR--HTWEHRAEQI 90 (92)
T ss_pred HHHHHHh--CCHHHHHHHH
Confidence 9998655 6777766654
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=79.26 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
++.+-..|..++..+.|+.|+..|.++++++|+++..+-..+.++.+.+++..|+..+.++++.+|....+|+..|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 002443 128 DEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 158 (921)
..+++.+|...|++...+.|+.+.+...+..
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 9999999999999999999999887544433
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00081 Score=66.09 Aligned_cols=111 Identities=18% Similarity=0.098 Sum_probs=96.9
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHhCCHHHHHH
Q 002443 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLE--------KDSGNV----------EAHIGKGICLQMQNMGRLAFD 103 (921)
Q Consensus 42 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~ 103 (921)
..+-.....+...|+.++..|+|.+|...|..++. ..|.++ ..+.++++|+...|+|-++++
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 33444667788899999999999999999998864 245443 468899999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002443 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
....++..+|.+..+++..|.+....-+.++|...|.++++++|.-..+
T Consensus 252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999999999975443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.019 Score=62.21 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHH-HHhCCChHHH
Q 002443 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYERC-LAVSPNFEIA 261 (921)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 261 (921)
.+++..++-..|....+|+.-++..+..-.. -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999999887665 45567788889999988 89999999999994 4455666777
Q ss_pred HHHHHHHHHhhhhh--hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002443 262 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (921)
Q Consensus 262 ~~~la~~~~~lg~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 315 (921)
+...+.+|-.+-.. .......++|+..|.++.+.+++. ..-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 77777777665332 122334777788888877777543 333445555555554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.33 Score=57.21 Aligned_cols=301 Identities=13% Similarity=-0.051 Sum_probs=184.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-----QNACAHTH 121 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 121 (921)
.+-...-+.-+...|...+|+...-.+ .+|..+ ...-..+.-++..++.. .+..+++.-| +++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence 455666677778889999998875554 233322 23334455555556543 3334444444 35666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 002443 122 CGILYKDEGRLVEAAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 194 (921)
.+.......++.+|..++.++...-+. .......++......|.+....|++++|++..+.++..-|.+ ..++
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 888889999999999999988765443 333334455666667788888999999999999999886654 5567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHh----CCChHHHH
Q 002443 195 YNLGVVYSELMQYDTALGCYEKAALERPM----Y--AEAYCNMGVIYKNRGD--LESAIACYERCLAV----SPNFEIAK 262 (921)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~--~~~A~~~~~~al~~----~p~~~~~~ 262 (921)
..+|.+..-.|++++|..+...+.+.... . ..+.+..+.++..+|+ +.+....|...-.. .|-.....
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 78899999999999999999998776322 2 2344555778888883 33333333332222 22211111
Q ss_pred HHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q 002443 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYY----NWHY--AD-AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-- 333 (921)
Q Consensus 263 ~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~~~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 333 (921)
...+.++.. +. +++.+..-..+.++. .|.. .. .++.++.++...|++++|...+.+....-.+.
T Consensus 581 ~~r~~ll~~----~~---r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 581 RIRAQLLRA----WL---RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred HHHHHHHHH----HH---HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 111111111 11 233333333333322 2221 11 33578899999999999998888877653222
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002443 334 -----AEACNNLGVIYKDRDNLDKAVECYQMAL 361 (921)
Q Consensus 334 -----~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (921)
..++.........+|+..+|.....+..
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 1122222333456788888888877743
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0018 Score=68.84 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002443 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 50 ~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (921)
.|+.+.+...+.+..+.|..+|+++.+..+.....|...|...+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456666777777778888888888876555567788888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002443 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (921)
.|+.+.|..+|++++..-+..... -.++......-...|+.+...+..+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~----~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQS----KKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHC----HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888888888888888776554311 123444444445556666666666666666555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.043 Score=70.55 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002443 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 320 (921)
..+-+-.+++++-....++.....++.++...+++....|.++.|...+-++.+.. -++++...|..+...|+...|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 44445555554433222223344566777777777777777777777777766555 4567777777777777777777
Q ss_pred HHHHHHHhhC-CC----------C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHH
Q 002443 321 VFYELAFHFN-PH----------C------AEACNNLGVIYKDRDNL--DKAVECYQMALSIKPNFSQSLNNLG 375 (921)
Q Consensus 321 ~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la 375 (921)
..+++.++.+ |+ . ..+...++......+++ +.-+++|+.+.+..|.....++.+|
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 7777777542 11 0 11222333333333432 3345666666666665555555555
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0001 Score=79.76 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002443 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 416 (921)
.-.-+...+..+.++.|+..|.+|++++|+.+..+.+.+.++.+.+++..|+..+.++++.+|....+|+..|.+...++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34456667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCChhhHhh
Q 002443 417 SISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 417 ~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
++.+|...|++...+.|+++.+...
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 9999999999999999999877654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.21 Score=54.01 Aligned_cols=78 Identities=9% Similarity=-0.144 Sum_probs=60.4
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002443 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (921)
Q Consensus 42 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (921)
...+.+.-.|+++.+.+-.++.+++-.+.|++...-.|-...+|...-..-...+++..-..+|-+++...-+ .+.|.
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~ 113 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM 113 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH
Confidence 4556788899999999999999999999999998888877777766665556677888888888888765432 34443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.11 Score=55.36 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=87.6
Q ss_pred HhCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-------CCCChHhHHHHH
Q 002443 94 MQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECLA 157 (921)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-------~p~~~~~~~~la 157 (921)
.+|+.+.|..++.++-... |+. ...+++.|......+ ++++|...++++.++ .....+......
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4566666666666554432 221 234566666666667 777777777777665 233445555677
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002443 158 IVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (921)
Q Consensus 158 ~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 222 (921)
.++..++.++...+.++ +|...++.+....|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 78888999998877654 455566666666788888876666667678999999999999987654
|
It is also involved in sporulation []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.22 Score=53.79 Aligned_cols=368 Identities=13% Similarity=0.042 Sum_probs=188.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002443 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 70 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
-++.-++.+|++...|+.+...+..++.+++-.+.|++...-.|--..+|...-.--...+++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3444578899999999999999999999999999999999888887777776665556678888888899888875433
Q ss_pred hHhHHHHHHHHHHHHHHHHHc------C----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCCHHHH
Q 002443 150 KPAAECLAIVLTDLGTSLKLA------G----NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---------ELMQYDTA 210 (921)
Q Consensus 150 ~~~~~~la~~~~~lg~~~~~~------g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A 210 (921)
.+.|.. |. .|.+. | ..-+|.+..-...-.+|.....|...+..+. ++.+.+.-
T Consensus 109 ldLW~l----Yl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 109 LDLWML----YL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred HhHHHH----HH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 222111 11 11111 1 1122333322233346777667766665543 34455666
Q ss_pred HHHHHHHHHhCCCCHH-HHHHH---------HHHHHHCC----CHHHHHHHHHHHHHhC-------CChHHHHHHHH---
Q 002443 211 LGCYEKAALERPMYAE-AYCNM---------GVIYKNRG----DLESAIACYERCLAVS-------PNFEIAKNNMA--- 266 (921)
Q Consensus 211 ~~~~~~al~~~p~~~~-~~~~l---------a~~~~~~g----~~~~A~~~~~~al~~~-------p~~~~~~~~la--- 266 (921)
...|.+++...-++.+ .|... +..-.-.| -|-.|...|++...+. |-+.......+
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 7778888765333321 11111 11111111 2445555555554331 11111000000
Q ss_pred ------HHHHhhhhhhhhcCC-HH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002443 267 ------IALTDLGTKVKLEGD-IN-QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (921)
Q Consensus 267 ------~~~~~lg~~~~~~~~-~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 338 (921)
.+-..+.+-+...++ .. .---.+++++...+-.++.|+.....+...++-+.|+...++++...|. ...
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~ 337 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTM 337 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hhe
Confidence 011111111111111 11 1222345566666666666666666666666666666666666555554 444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh------------------CC------------CCHHHHHHHHHHHHHcCCHHHHH
Q 002443 339 NLGVIYKDRDNLDKAVECYQMALSI------------------KP------------NFSQSLNNLGVVYTVQGKMDAAA 388 (921)
Q Consensus 339 ~la~~~~~~g~~~~A~~~~~~al~~------------------~p------------~~~~~~~~la~~~~~~g~~~~A~ 388 (921)
.++.+|....+-++-..+|+++.+- ++ ...-+++.+-..-.+..-.+.|.
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 4455554444444444444443321 01 00113333333333444455566
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhc
Q 002443 389 EMIEKAIAANPTYAEAYNNLGV-LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (921)
Q Consensus 389 ~~l~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~ 449 (921)
..|-++-+..-....++..-|. -|...|++.-|...|+-.+...||++-.....+.-+..+
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 6666555443122222222222 234456666666666666666666655544444333333
|
|
| >PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0031 Score=72.91 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=106.2
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 659 FITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 659 ~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
.++|.||++.. ++.++.++...+.+.+.|.-++|-.+... .. .++ +++|.+.+++| +.+.|
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-----~~--------~~~-p~Nv~i~~w~P-q~~lL- 360 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-----EA--------INL-PANVLTQKWFP-QRAVL- 360 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-----Cc--------ccC-CCceEEecCCC-HHHHh-
Confidence 36677777654 57889999999999999975455433221 00 234 58999999987 45555
Q ss_pred hcccccEEecCCCCCCcccHHHHhhcCCcEEecCC--CcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHH
Q 002443 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 810 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~~gl~~~i~---~~~~~y~~~a~~l~~d~~ 810 (921)
....||+|+ ..+|..|+.||++.|||+|.+|- +.+ .-+..+...|....+- -+.++..+...++.+|+.
T Consensus 361 ~hp~v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ~---~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 361 KHKNVKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQF---YNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPK 434 (507)
T ss_pred cCCCCCEEE---ecCCcccHHHHHHcCCCEEECCCCccHH---HHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHH
Confidence 335688888 35777899999999999999884 332 2234445667764442 266787777778999987
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002443 811 ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 842 (921)
.+++.++ +++.+...|.=-.+..+..+|.+.
T Consensus 435 y~~~a~~-ls~~~~~~p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 435 YRKNLKE-LRHLIRHQPMTPLHKAIWYTEHVI 465 (507)
T ss_pred HHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7766554 444444455433455556565554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00023 Score=51.76 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002443 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408 (921)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 408 (921)
+..+|.+|...|++++|++.|+++++.+|+++.++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 33444444444444444444444444444444444433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.4 Score=56.59 Aligned_cols=304 Identities=15% Similarity=0.035 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHH
Q 002443 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (921)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (921)
.+.+..-+.-+...|...+|++..-.+ .+|... ......+.-+...++.. .+..+++.-|... ........
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~--l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAEL--LASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHH--HhhCchHH
Confidence 456666666677777777777655333 222221 12223333344444432 2223333333211 11111223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 002443 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 226 (921)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 226 (921)
...+.......++.+|...+.++...-+. .+...-..|.+....|++++|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 34455666778999999888887665333 24455567888999999999999999999876653 45
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHH--HHHHHHHHH----HHhCCCCH
Q 002443 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKA----LYYNWHYA 300 (921)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~--~A~~~~~~a----l~~~~~~~ 300 (921)
++..+|.+..-.|++++|..+...+.+....+. .++....+....+.+...+|+.. +....+... +...|...
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHD-VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 778889999999999999999999887754432 22233344455566666677322 222222222 22233322
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----H
Q 002443 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--AE-ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----S 368 (921)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~ 368 (921)
-.....+.++...-+++.+.....+.++. .|.. .. .++.++.++...|++++|...+.+...+-.+. .
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 23333333433333466666666665554 2322 22 23589999999999999999999887763222 1
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 369 Q--SLNNLGVVYTVQGKMDAAAEMIEKA 394 (921)
Q Consensus 369 ~--~~~~la~~~~~~g~~~~A~~~l~~a 394 (921)
. ++.-.......+|+.++|.....+.
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1 1222223344579999998888774
|
|
| >PLN03004 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0018 Score=73.25 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=89.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-------HH-HHHHHHHHHHHcCCCCCCEEEccCcC
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-------DS-VRHRFLSTLEQLGLESLRVDLLPLIL 728 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-------~~-~~~~~~~~~~~~gi~~~rv~~~~~~~ 728 (921)
.+-|+|.||.+...++++-++-.+.-|...+...||.+..+... .. +.+.+.++. .-..+++.+++|
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~-----~~~g~~v~~W~P 343 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRT-----EDKGMVVKSWAP 343 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhc-----cCCcEEEEeeCC
Confidence 34588999999999999999999999999999999988643110 00 112333332 224567778877
Q ss_pred CcHHHHHhcccccE--EecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHh-hcCCccccc------CCHHHHH
Q 002443 729 LNHDHMQAYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYV 799 (921)
Q Consensus 729 ~~~~~~~~~~~~Dv--~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~-~~gl~~~i~------~~~~~y~ 799 (921)
+.+.|+ .++| |+ ..+|-+|++||+++|||+|++|--. -...-+.++. .+|+.--+. -+.++-.
T Consensus 344 -Q~~iL~---H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~~-DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~ 415 (451)
T PLN03004 344 -QVPVLN---HKAVGGFV---THCGWNSILEAVCAGVPMVAWPLYA-EQRFNRVMIVDEIKIAISMNESETGFVSSTEVE 415 (451)
T ss_pred -HHHHhC---CCccceEe---ccCcchHHHHHHHcCCCEEeccccc-cchhhHHHHHHHhCceEEecCCcCCccCHHHHH
Confidence 455443 3555 65 2478889999999999999998421 1222233443 345543332 2556666
Q ss_pred HHHHHHhcCH
Q 002443 800 QLALQLASDV 809 (921)
Q Consensus 800 ~~a~~l~~d~ 809 (921)
+...++..|+
T Consensus 416 ~av~~vm~~~ 425 (451)
T PLN03004 416 KRVQEIIGEC 425 (451)
T ss_pred HHHHHHhcCH
Confidence 6666666664
|
|
| >PLN02992 coniferyl-alcohol glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0032 Score=71.68 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=89.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC---------------CH----HHHHHHHHHHHHcCCC
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC---------------CD----SVRHRFLSTLEQLGLE 717 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~---------------~~----~~~~~~~~~~~~~gi~ 717 (921)
.+-|+|.||.+...++++-++-.+.-|...|...||.+..+.. .+ ..-+.+.++.+.
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~---- 337 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHD---- 337 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcC----
Confidence 3458899999999999999999999999999999998853210 00 112344444322
Q ss_pred CCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC--CcccccchhHHH-hhcCCccccc--
Q 002443 718 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLL-TKVGLKHLIA-- 792 (921)
Q Consensus 718 ~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l-~~~gl~~~i~-- 792 (921)
..+++.+++| +.+.+.- ..+..|+ ..+|.+|++||+++|||+|++|- +.+. -+-.+ ..+|+.-.+.
T Consensus 338 -rg~vv~~W~P-Q~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~---na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 338 -RGFVVPSWAP-QAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQNM---NAALLSDELGIAVRSDDP 408 (481)
T ss_pred -CCEEEeecCC-HHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhHH---HHHHHHHHhCeeEEecCC
Confidence 3467778877 4444432 2233344 34888899999999999999984 4322 23334 3556553332
Q ss_pred ---CCHHHHHHHHHHHhcC
Q 002443 793 ---KNEDEYVQLALQLASD 808 (921)
Q Consensus 793 ---~~~~~y~~~a~~l~~d 808 (921)
-+.++..+...++..+
T Consensus 409 ~~~~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVE 427 (481)
T ss_pred CCcccHHHHHHHHHHHhcC
Confidence 2556666666677665
|
|
| >TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0049 Score=69.94 Aligned_cols=169 Identities=14% Similarity=0.082 Sum_probs=110.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-----HHHHHHHHHHHHH-------cCCCCC
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-----DSVRHRFLSTLEQ-------LGLESL 719 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~-----~~~~~~~~~~~~~-------~gi~~~ 719 (921)
|..++.+..|+ .|..+.-++++.++|+..|+ .+|++++.+... ...+..+.+...+ .|.. .
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~-p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT-P 362 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc-c
Confidence 44456677877 89999999999999999996 688888765422 2234444443333 3554 3
Q ss_pred CEEEccCcCCcHHHHHhcccccEEecCCCCCC-cccHHHHhhcCC----cEEecCCCcccccchhHHHhhcCCcccc--c
Q 002443 720 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGV----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 792 (921)
Q Consensus 720 rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~Gv----Pvvt~~g~~~~~r~~~~~l~~~gl~~~i--~ 792 (921)
.+.|.+.++ .++..+.|+.+||+|.|+-+-| +.++.|.++++. |+|. |+.+++- ..+. .-++ .
T Consensus 363 v~~~~~~v~-~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l~-~AllVNP 432 (487)
T TIGR02398 363 LQFFTRSLP-YEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VELK-GALLTNP 432 (487)
T ss_pred EEEEcCCCC-HHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhcC-CCEEECC
Confidence 456667666 7899999999999999999955 669999999988 6664 7776432 2221 1222 4
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002443 793 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 793 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 840 (921)
.|.++..+...+..+.+ +++++--+++++.+.+ +|...|++.+=.
T Consensus 433 ~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl~ 478 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFLA 478 (487)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHH
Confidence 56777666555544444 3444444455555433 466776665543
|
Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise. |
| >COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0041 Score=68.01 Aligned_cols=243 Identities=16% Similarity=0.161 Sum_probs=144.4
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEe----eccCCCCCCCCCccEEEecCCCCCCCcccCcccceE
Q 002443 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVT----WIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELI 631 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~ApvQ~~----~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~~e~~~ 631 (921)
.++-+.|+..++|++|-..|+-.+--.--.....=||=+. ..|--+-...+..+++.+.. .. .......|+.+
T Consensus 81 ~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~f-~~--~~~~~~~~~~~ 157 (357)
T COG0707 81 LQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASAF-PK--LEAGVKPENVV 157 (357)
T ss_pred HHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeecc-cc--ccccCCCCceE
Confidence 5788899999999999998888744333223333554322 12222222223344444321 11 11111122222
Q ss_pred EcCCCccccCCCCC--CCCCCCCCCCCCCCeEEEecC---CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 002443 632 RLPECFLCYTPSPE--AGPVCPTPALTNGFITFGSFN---NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 706 (921)
Q Consensus 632 ~lp~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 706 (921)
..-.. ..+.-. ..+..+..+.. +..|...+. -..+++..+-+++..+.+ +-.++..++. ....+
T Consensus 158 ~tG~P---vr~~~~~~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~----~~~~~ 226 (357)
T COG0707 158 VTGIP---VRPEFEELPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGK----NDLEE 226 (357)
T ss_pred EecCc---ccHHhhccchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCc----chHHH
Confidence 22110 000000 00000111111 343343333 345566666666655444 3455555443 22567
Q ss_pred HHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcc---cccchhHHH
Q 002443 707 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLL 782 (921)
Q Consensus 707 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l 782 (921)
+.....+.|+ +.+.|.. ++....|..+|+++ . +|++|..|.+++|+|+|-.|=..- ....-|-.|
T Consensus 227 ~~~~~~~~~~----~~v~~f~---~dm~~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 227 LKSAYNELGV----VRVLPFI---DDMAALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred HHHHHhhcCc----EEEeeHH---hhHHHHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 7777777777 6666663 46777888899999 6 899999999999999998774433 445567888
Q ss_pred hhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002443 783 TKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLM 823 (921)
Q Consensus 783 ~~~gl~~~i~~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 823 (921)
...|..-++.. +.+.+++...++.++++.+.+++...++..
T Consensus 296 ~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 296 EKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 88888777754 468999999999999999999999888763
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.25 Score=53.65 Aligned_cols=338 Identities=12% Similarity=-0.004 Sum_probs=179.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------
Q 002443 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--------------- 115 (921)
Q Consensus 51 ~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------------- 115 (921)
+..+....+-.++.+.-...+-..-+..|..+......|...++.+.+.+|++.+....+.-...
T Consensus 48 l~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 48 LGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 33334444555677776666666666788888888999999999999999999988776541111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChHhHHHHHHHHHHHHHHHHH----cCChHHHHHHHH-----
Q 002443 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYY----- 181 (921)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~----- 181 (921)
...-...+.++...|++.++...+++.+..--. +.+.+.. +...+|..|.. ....+-+..+|+
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~---~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR---AVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH---HHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 112244578899999999999999988764222 1222111 11122322221 111111111111
Q ss_pred --HHHhh------------------------CCCC-----HHHHHHHHHHHH--------------HcCCHHHHHHHHHH
Q 002443 182 --EALKI------------------------DPHY-----APAYYNLGVVYS--------------ELMQYDTALGCYEK 216 (921)
Q Consensus 182 --~al~~------------------------~p~~-----~~~~~~la~~~~--------------~~g~~~~A~~~~~~ 216 (921)
++-.. -|.. ..++.+...-|. -..+.+++....+.
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ 284 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEA 284 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHH
Confidence 11110 1110 001111000000 01122222222222
Q ss_pred HHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHH------------------------------
Q 002443 217 AALE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA------------------------------ 261 (921)
Q Consensus 217 al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------------ 261 (921)
.... ...-....-.+-....+.++..+|.+++.-...++|+....
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 2111 00011112222223345566677776666655555543210
Q ss_pred ----------HHHHHHHHHhhhhhhhhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHh
Q 002443 262 ----------KNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAFH 328 (921)
Q Consensus 262 ----------~~~la~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 328 (921)
...+...+...+.-+...|. -++|+..++.+++..+.+.+.....-. +-...|.+|+. .+.+.+.
T Consensus 365 we~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 365 WEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHH
Confidence 11111122223333444555 788999999999888877654322111 11112222221 1222221
Q ss_pred h---------CC---CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 329 F---------NP---HCAEACNNL--GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (921)
Q Consensus 329 ~---------~p---~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 394 (921)
+ .| .+.+.-+.+ |..++.+|+|.++.-+-.=..++.| .+.++..+|.++...++|++|..++...
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 1 11 234454555 4557789999999998888889999 8999999999999999999999998754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.33 Score=54.84 Aligned_cols=385 Identities=11% Similarity=-0.019 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 002443 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGI 124 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 124 (921)
-.|-..|..-.+.|..+++.+.|++.+.--|.+...|..+-... -..|+.+.-...|++|....-. ....|-..-.
T Consensus 80 gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 80 GYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 34556678888899999999999999999998888877654444 3567777778888888876543 2345555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhh--CCCC---HHHH
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-----AGNTQDGIQKYYEALKI--DPHY---APAY 194 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~--~p~~---~~~~ 194 (921)
....++++..-...|++.++.--.... ..+...-..... .-..+++++.-...... .+.. .+.+
T Consensus 160 ~en~qks~k~v~~iyeRileiP~~~~~------~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~ 233 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEIPLHQLN------RHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEEL 233 (577)
T ss_pred HHhccccHHHHHHHHHHHHhhhhhHhH------HHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHH
Confidence 667788899999999998875322111 111110000000 11122222211111100 0000 0000
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHH
Q 002443 195 -YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIA 268 (921)
Q Consensus 195 -~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~ 268 (921)
...-.+-...+.++++...+.+.+ ...-.++.......+.+..++..++. .|-+.... ..
T Consensus 234 ~~~v~~~~~~s~~l~~~~~~l~~~~----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql----~n 299 (577)
T KOG1258|consen 234 EIGVKDSTDPSKSLTEEKTILKRIV----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL----KN 299 (577)
T ss_pred HHHHhhccCccchhhHHHHHHHHHH----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH----HH
Confidence 000000000111222222111111 11112333334445555556655542 22222111 11
Q ss_pred HHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHc
Q 002443 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVIYKDR 347 (921)
Q Consensus 269 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~ 347 (921)
+..........|+++.....|++++--.....+.|...+......|+.+-|...+..+.++ .+..+.+...-+......
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 2222233445789999999999999888888999999999999999999999999988887 466788888888888999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCC---HHHHHHHHHH-HHHcCCHHH
Q 002443 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVL-YRDAGSISL 420 (921)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~l~~al~~~p~~---~~~~~~la~~-~~~~g~~~~ 420 (921)
|++..|...+++..+..|+...+-.........+|+.+.+.. ++.....-..+. ...+...+.. +.-.++.+.
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~ 459 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADL 459 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999998889998888888888889999998884 333322221111 2334444444 344688999
Q ss_pred HHHHHHHHhhcCCCChhhHhhHHHHhhhccCCC
Q 002443 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (921)
Q Consensus 421 A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~ 453 (921)
|...+.++++..|++...+...+-...+...+.
T Consensus 460 a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 460 ARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 999999999999999877666544333333333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00032 Score=51.06 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002443 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (921)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (921)
.++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666666666666666666666666666666666553
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0013 Score=67.66 Aligned_cols=103 Identities=19% Similarity=0.165 Sum_probs=93.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (921)
.++.+-..|+.|++.++|..|+..|.+.|+..-. ++..|.+.+.|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4566777899999999999999999999997544 456889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002443 123 GILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
|.+++.+.++.+|...++..+.++.+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999999987766543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.042 Score=59.63 Aligned_cols=178 Identities=12% Similarity=0.019 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhcCCCChHh
Q 002443 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHKA-LSADPSYKPA 152 (921)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 152 (921)
+++....+-.+|....+|+.-+++.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999988887666 45567788889999988 99999999999994 4556667777
Q ss_pred HHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 002443 153 AECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (921)
Q Consensus 153 ~~~la~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 220 (921)
.-..+.+|..+-.. .......++|+..|.++.+.+|+. ..-.|++.++...|...+...-+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 66677777665433 122345899999999999999654 344566666766665433332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH
Q 002443 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (921)
Q Consensus 221 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (921)
.-.+...+-.++.+..-.|++++|++.++++++..|..-
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 123445566777888889999999999999999987643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00021 Score=48.53 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=17.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (921)
Q Consensus 391 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (921)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
|
|
| >PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0085 Score=72.81 Aligned_cols=177 Identities=17% Similarity=0.135 Sum_probs=119.1
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE----EEEecCCCC-CHHHHHHHHHHHH--------HcCC-CCCCE
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPFC-CDSVRHRFLSTLE--------QLGL-ESLRV 721 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~~~~~~~~-~~~~~~~~~~~~~--------~~gi-~~~rv 721 (921)
|..++.+..++ .|..+.-+.+|.+.|+..|+-+ |+-+..|.. +.+..+.++..+. ++|- +..=|
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv 441 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPI 441 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceE
Confidence 34456666766 8999999999999999999853 333333322 2123333333332 2332 11225
Q ss_pred EEccCcCCcHHHHHhcccccEEecCCCCCC-cccHHHHhhc-----CCcEEecCCCcccccch--hHHHhhcCCcccc--
Q 002443 722 DLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYM-----GVPCVTMAGSVHAHNVG--VSLLTKVGLKHLI-- 791 (921)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~-----GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~i-- 791 (921)
++....-+.+++++.|..+||||.|.-.-| +.++.|+++| ||+|+ |.++ +..| |-..++
T Consensus 442 ~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLIL--------SEfaGaa~~L---~~~AllVN 510 (934)
T PLN03064 442 HHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLIL--------SEFAGAAQSL---GAGAILVN 510 (934)
T ss_pred EEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEE--------eCCCchHHHh---CCceEEEC
Confidence 555543447899999999999999998855 7799999999 67777 3333 1122 323344
Q ss_pred cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002443 792 AKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 848 (921)
Q Consensus 792 ~~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 848 (921)
..|.++..+...+.++ +++++....+.+++.+. -+|...|++.|.+.+...|..
T Consensus 511 P~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~---~~d~~~Wa~~fl~~L~~~~~~ 565 (934)
T PLN03064 511 PWNITEVAASIAQALNMPEEEREKRHRHNFMHVT---THTAQEWAETFVSELNDTVVE 565 (934)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc---cCCHHHHHHHHHHHHHHHHhh
Confidence 3577888777777666 88888888888888763 368899999988888888743
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0024 Score=65.81 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002443 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231 (921)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 231 (921)
.|.-+..-|+-|++.++|..|+..|.+.|+..-. ++..|.+.+.+....|+|..|++-..+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5667888899999999999999999999988433 467789999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC
Q 002443 232 GVIYKNRGDLESAIACYERCLAVSPN 257 (921)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~p~ 257 (921)
+.+++.+.++.+|...++..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998876554
|
|
| >PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0051 Score=70.39 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=74.0
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC----HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHH
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 733 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 733 (921)
+.++|.||.+...++++.++-.+.-|.+.+...||.++.+... ......+.++.. ...+++.++++ +.+.
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-----~~g~~v~~w~P-Q~~v 356 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-----GRGLVIRGWAP-QVAI 356 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc-----cCCEEecCCCC-HHHH
Confidence 4578999999999999999999999999999899988643211 012223333322 24567778887 4444
Q ss_pred HHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002443 734 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 734 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
|. ...+++|+ ..+|-+|++||+++|||+|++|-
T Consensus 357 L~-h~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 357 LS-HRAVGAFL---THCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred hc-CCCcCeEE---ecCCchHHHHHHHcCCCEEeCCc
Confidence 43 34577777 35888899999999999999983
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00035 Score=47.57 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0033 Score=71.40 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=89.7
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-CHH----HHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-CDS----VRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~----~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
.+-|+|.||.+..+++++.+.-.+.-|...+...||.+..+.. ++. +...+.++ + .+|..+.+++| +.
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-----~-~~~g~v~~w~P-Q~ 335 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-----I-SGRGYIVKWAP-QK 335 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-----c-cCCeEEEccCC-HH
Confidence 3568899999999999999999999999999989998763311 111 22333333 2 36777778887 45
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhc-CCcccc--cCCHHHHHHHHHHHhcC
Q 002443 732 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLALQLASD 808 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~-gl~~~i--~~~~~~y~~~a~~l~~d 808 (921)
+.|+ +..+..|+ ..+|-+|++||+++|||+|++|--.= ...-+-.+... |+.--+ .-+.++..+...++..|
T Consensus 336 ~iL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~D-Q~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~ 410 (451)
T PLN02410 336 EVLS-HPAVGGFW---SHCGWNSTLESIGEGVPMICKPFSSD-QKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVE 410 (451)
T ss_pred HHhC-CCccCeee---ecCchhHHHHHHHcCCCEEecccccc-CHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcC
Confidence 5443 34455566 34788899999999999999984211 12222333221 333111 12556666666666666
Q ss_pred H
Q 002443 809 V 809 (921)
Q Consensus 809 ~ 809 (921)
+
T Consensus 411 ~ 411 (451)
T PLN02410 411 E 411 (451)
T ss_pred C
Confidence 4
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.26 Score=63.88 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------C
Q 002443 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT----------Y 401 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~----------~ 401 (921)
..+.|...|++....|+++.|..++-+|.+.. -++++...|..+...|+-..|+..+++.++.+ |+ .
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 36777888888888888888887777777665 46677777888888888888888888877652 22 1
Q ss_pred ------HHHHHHHHHHHHHcCCH--HHHHHHHHHHhhcCCCChhh
Q 002443 402 ------AEAYNNLGVLYRDAGSI--SLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 402 ------~~~~~~la~~~~~~g~~--~~A~~~~~~al~l~P~~~~a 438 (921)
..+...++......|++ ..-+++|+.+.++.|...+-
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence 12344444555555553 33456777777777754443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00026 Score=48.05 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=19.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (921)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 388 (921)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
|
|
| >PLN03007 UDP-glucosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0059 Score=70.40 Aligned_cols=103 Identities=15% Similarity=0.025 Sum_probs=68.7
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-H---HHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-D---SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~---~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
++.++|.||.+...+++.-+.-.+.-|...+...||.++.+... + ...+.+.++. .+..|++.+++| +.+
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-----~~~g~~v~~w~P-Q~~ 357 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERT-----KGKGLIIRGWAP-QVL 357 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHh-----ccCCEEEecCCC-HHH
Confidence 34578999999888877766666677888888889988753211 0 1122333322 135678888887 444
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC
Q 002443 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 769 (921)
Q Consensus 733 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 769 (921)
.|.- ..+..|+ ..+|-+|++||+++|||+|++|
T Consensus 358 iL~h-~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 358 ILDH-QATGGFV---THCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred Hhcc-Cccceee---ecCcchHHHHHHHcCCCeeecc
Confidence 4432 2233465 3577889999999999999998
|
|
| >PLN02764 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0054 Score=69.25 Aligned_cols=182 Identities=9% Similarity=0.008 Sum_probs=105.3
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC----HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
.+.|+|.||.+...+++.-+.-.+.=|...-.--+|++..+... ..+.+.+..+....| +++.+++| +.+
T Consensus 256 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG-----~v~~~W~P-Q~~ 329 (453)
T PLN02764 256 PDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRG-----VVWGGWVQ-QPL 329 (453)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCC-----cEEeCCCC-HHH
Confidence 45689999999999887766666655556666688887643211 112234444433322 45667776 455
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHH-hhcCCcccc------cCCHHHHHHHHHHH
Q 002443 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLI------AKNEDEYVQLALQL 805 (921)
Q Consensus 733 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~i------~~~~~~y~~~a~~l 805 (921)
.| ....++.|+ ..+|.+|++||+++|||+|++|--.= ...-+.++ ..+|+.--+ .-+.++-.+...++
T Consensus 330 vL-~h~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~D-Q~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~v 404 (453)
T PLN02764 330 IL-SHPSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLGD-QVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSV 404 (453)
T ss_pred Hh-cCcccCeEE---ecCCchHHHHHHHcCCCEEeCCcccc-hHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHH
Confidence 44 345566677 35888899999999999999985211 12223334 334443111 12667777777777
Q ss_pred hcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002443 806 ASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKG 852 (921)
Q Consensus 806 ~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 852 (921)
..+. +..+.+|++.++..... .++-..-+.+++..+. |++++.+
T Consensus 405 m~~~~~~g~~~r~~a~~~~~~~--~~~GSS~~~l~~lv~~-~~~~~~~ 449 (453)
T PLN02764 405 MKRDSEIGNLVKKNHTKWRETL--ASPGLLTGYVDNFIES-LQDLVSG 449 (453)
T ss_pred hcCCchhHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHH-HHHhccc
Confidence 7664 45566666665533222 1222233455555533 5555544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00058 Score=46.41 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002443 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
++++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 566777777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PLN02167 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0062 Score=70.02 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
+.|+|-||.+...++++.++-.+.-|.+.+...||.++.+... ....+.+.++.. +|..+.+++| +.+
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~------~rg~v~~w~P-Q~~ 352 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVM------GRGLVCGWAP-QVE 352 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhc------cCeeeeccCC-HHH
Confidence 4578999998888899999999999999999888887643211 011223333321 4556678876 444
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002443 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 733 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
.| .+..++.|+ ..+|-+|++||+++|||+|++|-
T Consensus 353 iL-~h~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~ 386 (475)
T PLN02167 353 IL-AHKAIGGFV---SHCGWNSVLESLWFGVPIATWPM 386 (475)
T ss_pred Hh-cCcccCeEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 44 344466666 35888899999999999999883
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.062 Score=53.98 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-H
Q 002443 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-T 209 (921)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~ 209 (921)
+-..|+...+.++.++|.+-..+...-.++..++ .+..+-++++.++++.+|++-.+|...-.+....|++. .
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 3345556666777777777666655444444443 34666778888888888888888888888888888877 7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh-hhhhhhhcCCHHHHHHH
Q 002443 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAY 288 (921)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-lg~~~~~~~~~~~A~~~ 288 (921)
-++..+.++..+.++..+|...-.+....+.++.-+.+..+.++.+-.+..++...-.+... .| ....-..+.-+.+
T Consensus 132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~--~~~~~~le~El~y 209 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKG--VISKAELERELNY 209 (318)
T ss_pred hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccC--CccHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888887766555444432111111 00 0011134455667
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH
Q 002443 289 YKKALYYNWHYADAMYNLGVAYGE 312 (921)
Q Consensus 289 ~~~al~~~~~~~~~~~~la~~~~~ 312 (921)
..+.+...|++..+|..|.-++..
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHh
Confidence 777788888888888777777665
|
|
| >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0085 Score=67.90 Aligned_cols=141 Identities=9% Similarity=0.021 Sum_probs=88.3
Q ss_pred CCCeEEEecCCCCc-CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 657 NGFITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 657 ~~~~~~~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+..++|.++.+... ....+.+...+.+...+.-.++..|..... . ..+ +++|.+.+.++ ..+.
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~----~--------~~~-~~~v~~~~~~p-~~~l-- 301 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG----A--------EDL-PDNVRVVDFVP-HDWL-- 301 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc----c--------cCC-CCceEEeCCCC-HHHH--
Confidence 34566777766543 445677777777777655555555432111 0 123 58899998875 4444
Q ss_pred hcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002443 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 812 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~---~~~~y~~~a~~l~~d~~~~ 812 (921)
+..||+++ ..+|.+|+.|||++|||+|.++-..- .-.-+..+...|..-.+.. +.++..+...++.+|+ .+
T Consensus 302 -l~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~ 375 (401)
T cd03784 302 -LPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SR 375 (401)
T ss_pred -hhhhheee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HH
Confidence 45599999 45777999999999999999875321 2334556667787655533 6777777777777754 44
Q ss_pred HHHHHHH
Q 002443 813 ANLRMSL 819 (921)
Q Consensus 813 ~~~r~~~ 819 (921)
++.++..
T Consensus 376 ~~~~~~~ 382 (401)
T cd03784 376 RRAAALL 382 (401)
T ss_pred HHHHHHH
Confidence 4444433
|
Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. |
| >PLN02554 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0054 Score=70.65 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=79.1
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----------C--HHHHHHHHHHHHHcCCCCCCEEEc
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-----------C--DSVRHRFLSTLEQLGLESLRVDLL 724 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~--~~~~~~~~~~~~~~gi~~~rv~~~ 724 (921)
+.|+|-||.+...++++.++..+.-|.+.+.-.||.+..+.. + +.....+.++. .+|+.+.
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~------~~~g~v~ 347 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT------KDIGKVI 347 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh------ccCceEE
Confidence 457899999999999999999999999999988888753210 0 00122333222 2677777
Q ss_pred cCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCc
Q 002443 725 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLK 788 (921)
Q Consensus 725 ~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~ 788 (921)
++.| +.+.| .+..++.|+ ..+|-+|++||++.|||+|++| ++.+.. +.-++..+|+.
T Consensus 348 ~W~P-Q~~iL-~H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~N--a~~~v~~~g~G 406 (481)
T PLN02554 348 GWAP-QVAVL-AKPAIGGFV---THCGWNSILESLWFGVPMAAWPLYAEQKFN--AFEMVEELGLA 406 (481)
T ss_pred eeCC-HHHHh-CCcccCccc---ccCccchHHHHHHcCCCEEecCccccchhh--HHHHHHHhCce
Confidence 8877 45555 335566666 3577889999999999999998 444322 11234555553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.013 Score=60.15 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=45.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002443 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 181 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
++.+..+|++..+-+.++..+...|+.++|++.+-..++.+. .+..+...+-.++...|.-+.+...+++
T Consensus 226 ~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 226 QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 444556777777777778878788888888777777776643 2455666666666666644444444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.039 Score=56.77 Aligned_cols=60 Identities=23% Similarity=0.210 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (921)
.+..+..+......|++.+|...|+.++...|++.++...++.|+...|+.+.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 334444555556666666666666666666666666666666666666666655555543
|
|
| >PLN02210 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.006 Score=69.55 Aligned_cols=138 Identities=13% Similarity=0.090 Sum_probs=87.6
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhc
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 737 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 737 (921)
..|+|.||.+..+.+++.++..+.-|...+...||.++..... .....+.++.. .+|..+.+++| +.+.|+-
T Consensus 269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~-~~~~~~~~~~~-----~~~g~v~~w~P-Q~~iL~h- 340 (456)
T PLN02210 269 SSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKA-QNVQVLQEMVK-----EGQGVVLEWSP-QEKILSH- 340 (456)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccc-cchhhHHhhcc-----CCCeEEEecCC-HHHHhcC-
Confidence 4578999999999999999999999999999888987643211 11122222211 25555668876 4554433
Q ss_pred ccccEEecCCCCCCcccHHHHhhcCCcEEecCC--CcccccchhHHHhh-cCCccccc-------CCHHHHHHHHHHHhc
Q 002443 738 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLAS 807 (921)
Q Consensus 738 ~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~-~gl~~~i~-------~~~~~y~~~a~~l~~ 807 (921)
..+..|| ..+|-+|++||++.|||+|++|- +.+ +-+-++.. +|+.-.+. -+.++-.+...++..
T Consensus 341 ~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~ 414 (456)
T PLN02210 341 MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---IDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTE 414 (456)
T ss_pred cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhc
Confidence 3344666 24778899999999999999984 433 22333433 44442221 255566555556555
Q ss_pred CH
Q 002443 808 DV 809 (921)
Q Consensus 808 d~ 809 (921)
|+
T Consensus 415 ~~ 416 (456)
T PLN02210 415 GP 416 (456)
T ss_pred Cc
Confidence 53
|
|
| >PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0014 Score=76.78 Aligned_cols=160 Identities=16% Similarity=0.224 Sum_probs=89.8
Q ss_pred CCCeEEEecCCCCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 657 NGFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+..++|-||++..+-.| +..+..++.+++.|...||-..+. .... + ++.+.+..+.| +.+.|+
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~~~---------l-~~n~~~~~W~P-Q~~lL~ 338 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PPEN---------L-PKNVLIVKWLP-QNDLLA 338 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HGCH---------H-HTTEEEESS---HHHHHT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----cccc---------c-cceEEEecccc-chhhhh
Confidence 34577999998776444 448889999999999777755431 1111 1 25678888887 566664
Q ss_pred hcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHH
Q 002443 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 810 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~i~---~~~~~y~~~a~~l~~d~~ 810 (921)
...+++|+ ..+|-+|+.||++.|||+|++| |+.+. -+..+...|....+- -|.++..+...++.+|+.
T Consensus 339 -hp~v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~---na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 339 -HPRVKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQPR---NAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp -STTEEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHHH---HHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHH
T ss_pred -cccceeee---eccccchhhhhhhccCCccCCCCcccCCc---cceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhH
Confidence 45567777 2477779999999999999988 55432 244556667754332 267888888888889987
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002443 811 ALANLRMSLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 840 (921)
..++.++ +++.+...|.--.+..+..+|-
T Consensus 412 y~~~a~~-ls~~~~~~p~~p~~~~~~~ie~ 440 (500)
T PF00201_consen 412 YKENAKR-LSSLFRDRPISPLERAVWWIEY 440 (500)
T ss_dssp HHHHHHH-HHHTTT----------------
T ss_pred HHHHHHH-HHHHHhcCCCCHHHHHHHHHHH
Confidence 6655443 4444443343222333444443
|
This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A .... |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.46 Score=58.28 Aligned_cols=334 Identities=14% Similarity=0.041 Sum_probs=183.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHh----C---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 002443 52 LSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTH 121 (921)
Q Consensus 52 l~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 121 (921)
+..-.+++..+.|+.|+..|+++-...|.. .++.+..|..+..+ | .+++|+..|++. .-.|.-+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence 445677888999999999999999988864 46888888887654 2 466777777663 345666777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH--------
Q 002443 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-------- 193 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------- 193 (921)
.|.+|.++|++++-+++|.-+++..|+.+......-.+.+.+-.+.... -..|....--++..-|.....
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 9999999999999999999999999998876554444444443333321 122333332333333321100
Q ss_pred ---------------------H---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002443 194 ---------------------Y---YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (921)
Q Consensus 194 ---------------------~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (921)
. +.+ .+.+-.|..---.+.++++.+..+ ..++.+.-.+...+|+++-+.+...
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (932)
T PRK13184 636 ILYHKQQATLFCQLDKTPLQFRSSKMEL-FLSFWSGFTPFLPELFQRAWDLRD--YRALADIFYVACDLGNWEFFSQFSD 712 (932)
T ss_pred HHHhhccCCceeeccCchhhhhhhhHHH-HHHHHhcCchhhHHHHHHHhhccc--HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 0 000 111122333333445555555443 2566666666777888776655444
Q ss_pred HHHH---h--CCChHH--HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHH
Q 002443 250 RCLA---V--SPNFEI--AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIV 321 (921)
Q Consensus 250 ~al~---~--~p~~~~--~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~ 321 (921)
..-+ . .|.... ....+...+..+ ........++++.+.+... .+.... +....+.-....++.+.-..
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (932)
T PRK13184 713 ILAEVSDEITFTESIVEQKVEELMFFLKGL-EALSNKEDYEKAFKHLDNT---DPTLILYAFDLFAIQALLDEEGESIIQ 788 (932)
T ss_pred HHHHHhhhccchHHHHhhhHHHHHHHHHHH-HHHHccccHHHHHhhhhhC---CHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3321 1 122211 111111111122 1222344666666544332 222221 22222222233333333223
Q ss_pred HHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002443 322 FYELAFHFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMAL--SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (921)
Q Consensus 322 ~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 395 (921)
..+.+-... ............+|.-..++++|-+.+..-- ....+...++...|.-+...++-+-|...|..+.
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 789 LLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 333222221 1223344455666777788888887774321 1123445677777777777778788877777766
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.26 Score=49.73 Aligned_cols=185 Identities=16% Similarity=0.107 Sum_probs=141.2
Q ss_pred cchHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 46 FEGKDALSYANILRSR-NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la 123 (921)
.+-+..+...++.+.. .+-..|+++-..++..+|.+...|...-.++..++ +..+-++++.++++.+|++-.+|...-
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr 119 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR 119 (318)
T ss_pred hhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 3455666666655544 45688999999999999999988888777776554 678889999999999999999999999
Q ss_pred HHHHHcCCHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002443 124 ILYKDEGRLV-EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (921)
Q Consensus 124 ~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (921)
.+....|+.. .-++..+.++..+.++-.++...- .+....+.++.-+.+..+.++.+-.+-.+|...-.+..
T Consensus 120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRq-------W~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~ 192 (318)
T KOG0530|consen 120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQ-------WVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVIT 192 (318)
T ss_pred HHHHHhcCcccchHHHHHHHHhccccchhhhHHHH-------HHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEE
Confidence 9999999888 888999999998888766644333 33344477999999999999887766666654322221
Q ss_pred H-c-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002443 203 E-L-----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (921)
Q Consensus 203 ~-~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (921)
. . -..+.-+.+..+.+...|++..+|..|.-++..
T Consensus 193 ~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 193 NTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred eccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 1 1 124556777888899999999999998888775
|
|
| >PLN00414 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0083 Score=68.04 Aligned_cols=155 Identities=10% Similarity=0.046 Sum_probs=92.4
Q ss_pred CCCCeEEEecCCCCcCC-HHHHHHHHHHHhHcCCcEEEEecCCCC----CHHHHHHHHHHHHHcCCCCCCEEEccCcCCc
Q 002443 656 TNGFITFGSFNNLAKIT-PKVLQVWARILCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 730 (921)
Q Consensus 656 ~~~~~~~~~~~~~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~----~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 730 (921)
+.+-|+|-||.+...++ +++.++... |...-..-||++..+.. .+...+.+.++....| +++.+++| +
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~a~g-L~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~P-Q 322 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEFCLG-MELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVE-Q 322 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHH-HHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCC-H
Confidence 34568999999999998 555555554 44444446788754321 1123445655554333 45567776 4
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHH-hhcCCccccc------CCHHHHHHHHH
Q 002443 731 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA------KNEDEYVQLAL 803 (921)
Q Consensus 731 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~i~------~~~~~y~~~a~ 803 (921)
.+.|+ ...++.|| ..+|.+|++||+++|||+|++|--.= ...-+.++ ..+|+.--+. -+.++-.+...
T Consensus 323 ~~vL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~d-Q~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 323 PLILS-HPSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLAD-QVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred HHHhc-CCccceEE---ecCchhHHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 45443 34456676 34888899999999999999984211 22234445 3456543221 26666666666
Q ss_pred HHhcCH-HHHHHHHHHHHHH
Q 002443 804 QLASDV-TALANLRMSLRDL 822 (921)
Q Consensus 804 ~l~~d~-~~~~~~r~~~~~~ 822 (921)
++..|. +..+++|++.++.
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKL 417 (446)
T ss_pred HHhcCChhhHHHHHHHHHHH
Confidence 666654 4455566655543
|
|
| >PLN02448 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0088 Score=68.58 Aligned_cols=135 Identities=14% Similarity=0.085 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
.+.++|-||.+...++++.++....-|...+...+|....+ ...+.+. ..+|+.+.++.+ +.+.|.
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------~~~~~~~------~~~~~~v~~w~p-Q~~iL~- 338 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------ASRLKEI------CGDMGLVVPWCD-QLKVLC- 338 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc------hhhHhHh------ccCCEEEeccCC-HHHHhc-
Confidence 35578999998888999999999999999888788865432 0112111 136788888876 455554
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhh-cCCccccc--------CCHHHHHHHHHHHhc
Q 002443 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA--------KNEDEYVQLALQLAS 807 (921)
Q Consensus 737 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~i~--------~~~~~y~~~a~~l~~ 807 (921)
+..+..|+ ..+|.+|++||+++|||+|++|--.= ...-+-.+.. +|+.--|. -+.++-.+...++..
T Consensus 339 h~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~~D-Q~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 339 HSSVGGFW---THCGWNSTLEAVFAGVPMLTFPLFWD-QPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD 414 (459)
T ss_pred cCccceEE---ecCchhHHHHHHHcCCCEEecccccc-chhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc
Confidence 23344466 35888899999999999999984211 1112223322 33332221 256676666667776
Q ss_pred CH
Q 002443 808 DV 809 (921)
Q Consensus 808 d~ 809 (921)
|+
T Consensus 415 ~~ 416 (459)
T PLN02448 415 LE 416 (459)
T ss_pred CC
Confidence 53
|
|
| >PLN02562 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.013 Score=66.74 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=87.4
Q ss_pred CeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhc
Q 002443 659 FITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 737 (921)
Q Consensus 659 ~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 737 (921)
.++|-||.+.. .++++.++..+.-+...+.-.||.+..+.. +.....+.++ + ++|+.+.++++ +.+.++-
T Consensus 274 svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~-~~l~~~~~~~-----~-~~~~~v~~w~P-Q~~iL~h- 344 (448)
T PLN02562 274 SVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR-EGLPPGYVER-----V-SKQGKVVSWAP-QLEVLKH- 344 (448)
T ss_pred ceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch-hhCCHHHHHH-----h-ccCEEEEecCC-HHHHhCC-
Confidence 36788888764 789999999999999999988887753211 1111222222 2 37888888887 4555532
Q ss_pred ccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHh-hcCCcccc-cCCHHHHHHHHHHHhcCHHHHH
Q 002443 738 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLI-AKNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 738 ~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~i-~~~~~~y~~~a~~l~~d~~~~~ 813 (921)
..+-.|+ ..+|-+|++||+++|||+|++| ++.+.. +-.+. .+|+.=-+ --+.++-.+...++..|++.++
T Consensus 345 ~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n---a~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~ 418 (448)
T PLN02562 345 QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFVN---CAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGE 418 (448)
T ss_pred CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchHHH---HHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHH
Confidence 3334555 3577889999999999999988 443321 12221 12332111 1266775555556667765554
Q ss_pred H
Q 002443 814 N 814 (921)
Q Consensus 814 ~ 814 (921)
+
T Consensus 419 ~ 419 (448)
T PLN02562 419 R 419 (448)
T ss_pred H
Confidence 4
|
|
| >PLN02207 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.018 Score=65.56 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
.+.++|-||.+...++++.++..+.-|...+...||.+..+.. .+.+.+.+.++. .+|+.+.++.| +.+.|
T Consensus 274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~------~~~g~i~~W~P-Q~~IL 346 (468)
T PLN02207 274 EASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRV------SGRGMICGWSP-QVEIL 346 (468)
T ss_pred CCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhc------CCCeEEEEeCC-HHHHh
Confidence 3568899999999999999999999999999999998764221 111112333322 36666778876 45555
Q ss_pred HhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcc
Q 002443 735 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVH 773 (921)
Q Consensus 735 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~ 773 (921)
+ +..+..|+ ..+|-++++||+++|||+|++| ++.+
T Consensus 347 ~-H~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 383 (468)
T PLN02207 347 A-HKAVGGFV---SHCGWNSIVESLWFGVPIVTWPMYAEQQ 383 (468)
T ss_pred c-ccccceee---ecCccccHHHHHHcCCCEEecCccccch
Confidence 3 34455565 2477889999999999999998 4444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.031 Score=53.81 Aligned_cols=117 Identities=24% Similarity=0.139 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 002443 318 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 391 (921)
Q Consensus 318 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l 391 (921)
+.....++....++.+. .+...++..+...+++++|+..++.++....+. .-+-.+|+.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444455555554442 345678889999999999999999998654332 336678999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002443 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
.......= .+......|.++...|+.++|+..|+++++.+++.
T Consensus 150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 76532210 13345678999999999999999999999998543
|
|
| >PLN00164 glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.011 Score=68.01 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=90.7
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-------CHH----HHHHHHHHHHHcCCCCCCEEEccC
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDS----VRHRFLSTLEQLGLESLRVDLLPL 726 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~~~----~~~~~~~~~~~~gi~~~rv~~~~~ 726 (921)
+.|+|.||.+...++++.++-.+.-|.+.+...||++..+.. +.. ..+.+.++.... .+++.++
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~-----g~~v~~w 346 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGR-----GLVWPTW 346 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCC-----CeEEeec
Confidence 457899999988999988999999999999988998764211 001 122333333222 2556677
Q ss_pred cCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCccccc--------CCHH
Q 002443 727 ILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA--------KNED 796 (921)
Q Consensus 727 ~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~i~--------~~~~ 796 (921)
.+ +.+.|.- ..+-.|| ..+|-+|++||+++|||+|++| ++.+.. +--+...+|+.-.+. -+.+
T Consensus 347 ~P-Q~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvG~~~~~~~~~~~~~~~e 419 (480)
T PLN00164 347 AP-QKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHLN--AFELVADMGVAVAMKVDRKRDNFVEAA 419 (480)
T ss_pred CC-HHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchhH--HHHHHHHhCeEEEeccccccCCcCcHH
Confidence 76 4444432 3333555 3578889999999999999998 443332 112234456543331 1455
Q ss_pred HHHHHHHHHhcCHH-HHHHHHHHHH
Q 002443 797 EYVQLALQLASDVT-ALANLRMSLR 820 (921)
Q Consensus 797 ~y~~~a~~l~~d~~-~~~~~r~~~~ 820 (921)
+-.+...++..|++ ..+++|++.+
T Consensus 420 ~l~~av~~vm~~~~~~~~~~r~~a~ 444 (480)
T PLN00164 420 ELERAVRSLMGGGEEEGRKAREKAA 444 (480)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHH
Confidence 55555556666543 2334444433
|
|
| >PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0068 Score=66.27 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
++..++.+++....- ++ .++++..|+..+++.|.+. ... ..++|.+.+.. ..++...
T Consensus 191 ~~~~iLv~~gg~~~~-----~~-~~~l~~~~~~~~~v~g~~~----~~~-----------~~~ni~~~~~~--~~~~~~~ 247 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG-----DL-IEALKALPDYQFIVFGPNA----ADP-----------RPGNIHVRPFS--TPDFAEL 247 (318)
T ss_pred CCCEEEEEeCCCcHH-----HH-HHHHHhCCCCeEEEEcCCc----ccc-----------cCCCEEEeecC--hHHHHHH
Confidence 344456676655333 44 3577789988888876541 000 14788887764 2466667
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecCCC-cccccchhHHHhhcCCccccc
Q 002443 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS-VHAHNVGVSLLTKVGLKHLIA 792 (921)
Q Consensus 737 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~-~~~~r~~~~~l~~~gl~~~i~ 792 (921)
+..||+++-. +|.||++|++++|+|+|.++-. ....+.-+..|..+|+...+.
T Consensus 248 m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~ 301 (318)
T PF13528_consen 248 MAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLS 301 (318)
T ss_pred HHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcc
Confidence 7779999943 7788899999999999998865 355667788899999987764
|
|
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.018 Score=61.29 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=55.5
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEec
Q 002443 667 NLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 745 (921)
Q Consensus 667 ~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld 745 (921)
...+++..+++...++. ++..+ ++.|.+.. ..+.+.+..+.. .+|.+.+.+ .+....+..||+++-
T Consensus 181 d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~---~~~~l~~~~~~~----~~i~~~~~~---~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 181 DPDNLTLKLLSALAESQ---INISITLVTGSSNP---NLDELKKFAKEY----PNIILFIDV---ENMAELMNEADLAIG 247 (279)
T ss_pred CCcCHHHHHHHHHhccc---cCceEEEEECCCCc---CHHHHHHHHHhC----CCEEEEeCH---HHHHHHHHHCCEEEE
Confidence 34556777777665532 33333 34454432 234555555442 478877764 355566677999996
Q ss_pred CCCCCCcccHHHHhhcCCcEEecC
Q 002443 746 TFPYAGTTTTCESLYMGVPCVTMA 769 (921)
Q Consensus 746 ~~~~~g~~t~~eal~~GvPvvt~~ 769 (921)
.||+|+.|++++|+|+|+++
T Consensus 248 ----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 248 ----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred ----CCchHHHHHHHcCCCEEEEE
Confidence 47799999999999998764
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >PLN02173 UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0098 Score=67.33 Aligned_cols=147 Identities=14% Similarity=0.180 Sum_probs=90.2
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
.+.++|-||.+...++++.++-.+.-|...| .||.+..+. .+...+.+.++ +..+++.+.++.| +.+.|+
T Consensus 263 ~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~-~~~lp~~~~~~-----~~~~~~~i~~W~P-Q~~iL~- 332 (449)
T PLN02173 263 QGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE-ESKLPPGFLET-----VDKDKSLVLKWSP-QLQVLS- 332 (449)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc-hhcccchHHHh-----hcCCceEEeCCCC-HHHHhC-
Confidence 3558899999999999999998888887666 778775321 11111222222 2246788889987 455443
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecCC--CcccccchhHHHhh-cCCccccc-------CCHHHHHHHHHHHh
Q 002443 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 806 (921)
Q Consensus 737 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~-~gl~~~i~-------~~~~~y~~~a~~l~ 806 (921)
+..+..|| ..+|.+|++||+++|||+|++|- +.+ .-+-++.. +|+.--|. -+.++-.+...++.
T Consensus 333 H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm 406 (449)
T PLN02173 333 NKAIGCFM---THCGWNSTMEGLSLGVPMVAMPQWTDQP---MNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVM 406 (449)
T ss_pred CCccceEE---ecCccchHHHHHHcCCCEEecCchhcch---HHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHh
Confidence 34445666 34888999999999999999983 432 22333432 23321111 15677777777766
Q ss_pred cCHHHHHHHHHHHH
Q 002443 807 SDVTALANLRMSLR 820 (921)
Q Consensus 807 ~d~~~~~~~r~~~~ 820 (921)
.|.+. +++|++.+
T Consensus 407 ~~~~~-~~~r~~a~ 419 (449)
T PLN02173 407 EGEKS-KEMKENAG 419 (449)
T ss_pred cCChH-HHHHHHHH
Confidence 66432 34444443
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=1.3 Score=52.01 Aligned_cols=368 Identities=13% Similarity=-0.022 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHH
Q 002443 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAESYH 140 (921)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~ 140 (921)
-++=+.-++.-+..++.+...+..+-..+...|++++-...-.++.++.|..+..|.....-.. ..++-.++...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 3444555555566778888888899999999999998888888888888888888766553322 3467788889999
Q ss_pred HHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTALGC 213 (921)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~ 213 (921)
+++.-. .....+...+......+..+...++++.-...|.+++..--. ....+...-..|...-..++-+.+
T Consensus 175 kal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~ 253 (881)
T KOG0128|consen 175 KALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIAL 253 (881)
T ss_pred HHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 998643 345555666666666666667778899999999988875221 244555566666666666777777
Q ss_pred HHHHHHhCCCC---HHHHHHHH--H-HHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHH
Q 002443 214 YEKAALERPMY---AEAYCNMG--V-IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (921)
Q Consensus 214 ~~~al~~~p~~---~~~~~~la--~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~ 287 (921)
+...+...-+. ...+.... . ......+++.|...+.+.+.............-..+...-+.....|+...-..
T Consensus 254 ~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l 333 (881)
T KOG0128|consen 254 FVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQL 333 (881)
T ss_pred HHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 77776654211 11122222 1 122344556666555444433332222222222233333444455666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHH------------------------------
Q 002443 288 YYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEA------------------------------ 336 (921)
Q Consensus 288 ~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~------------------------------ 336 (921)
.++++....+.+...|...+...-. ++-.+.+...+.+++...|-....
T Consensus 334 ~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~ 413 (881)
T KOG0128|consen 334 IEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV 413 (881)
T ss_pred HHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 6777766666555555554433211 111111111111111111110000
Q ss_pred -HHHHHHHHHH-c------CCH-------HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC
Q 002443 337 -CNNLGVIYKD-R------DNL-------DKAVECYQMALSI-KPNFSQSLNNLGVVYTV-QGKMDAAAEMIEKAIAANP 399 (921)
Q Consensus 337 -~~~la~~~~~-~------g~~-------~~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~p 399 (921)
+.+....|.+ . .++ ..|..+|...... -......+...|.++.. +++.+.|..+.+..+....
T Consensus 414 ~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~ 493 (881)
T KOG0128|consen 414 ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG 493 (881)
T ss_pred HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc
Confidence 1111111111 1 122 3333333333222 11123344455555443 5678888888777766655
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002443 400 TYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 400 ~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
.... .|+....+-...|+...+..++++|+.--
T Consensus 494 ~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 494 GSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred chHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 4444 77777888888899999999888887643
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00087 Score=69.43 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (921)
..-..|...+..|.+++|++.|..+++++|..+..+..++.++..+++...|+..+..+++++|+...-|-..+.....+
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 33445777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 002443 130 GRLVEAAESYHKALSADPS 148 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~ 148 (921)
|++++|...++.+.+++-+
T Consensus 196 g~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hchHHHHHHHHHHHhcccc
Confidence 9999999999999987654
|
|
| >PLN02208 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.013 Score=66.54 Aligned_cols=151 Identities=12% Similarity=0.065 Sum_probs=92.1
Q ss_pred CCCeEEEecCCCCcCCHH-HHHHHHHH-HhHcCCcEEEEecCCCC----CHHHHHHHHHHHHHcCCCCCCEEEccCcCCc
Q 002443 657 NGFITFGSFNNLAKITPK-VLQVWARI-LCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 730 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~----~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 730 (921)
.+.|+|-||.+..+++++ +.++...+ ....|- +|+...+.. .+.+.+.+.++... ..+++.++.| +
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r~~~-----~g~~v~~W~P-Q 321 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEERVKG-----RGVVWGGWVQ-Q 321 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHHHhc-----CCcEeeccCC-H
Confidence 346889999999998888 88877776 777775 566542211 11233444444433 3355667776 4
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHh-hcCCccccc------CCHHHHHHH
Q 002443 731 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQL 801 (921)
Q Consensus 731 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~i~------~~~~~y~~~ 801 (921)
.+.|+ ...+..|+ ..+|-+|++||++.|||+|++| ++.+. -+-++. .+|+.--+- -+.++-.+.
T Consensus 322 ~~iL~-H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~---na~~~~~~~g~gv~~~~~~~~~~~~~~l~~a 394 (442)
T PLN02208 322 PLILD-HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVL---FTRLMTEEFEVSVEVSREKTGWFSKESLSNA 394 (442)
T ss_pred HHHhc-CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHH---HHHHHHHHhceeEEeccccCCcCcHHHHHHH
Confidence 55553 34455566 3478889999999999999998 44432 223333 356543331 255666655
Q ss_pred HHHHhcCH-HHHHHHHHHHHHH
Q 002443 802 ALQLASDV-TALANLRMSLRDL 822 (921)
Q Consensus 802 a~~l~~d~-~~~~~~r~~~~~~ 822 (921)
..++..|+ +..+++|++.++.
T Consensus 395 i~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 395 IKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred HHHHhcCCchhHHHHHHHHHHH
Confidence 55666554 4456666666543
|
|
| >PLN02555 limonoid glucosyltransferase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=66.71 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=92.5
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH-HHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~-~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
+.|+|-||.+...+++..+.-.+.-|...+...||.+..+.... .....+-+-+.+ .+ .+|+.+.++.| +.+.| .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~P-Q~~iL-~ 352 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCP-QEKVL-A 352 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCC-HHHHh-C
Confidence 34779999988899998888888888999888888865321100 000111111211 12 36777788876 44444 4
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCccccc--------CCHHHHHHHHHHHh
Q 002443 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA--------KNEDEYVQLALQLA 806 (921)
Q Consensus 737 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~i~--------~~~~~y~~~a~~l~ 806 (921)
+..+..|+ ..+|-+|++||+++|||+|++| ++.+.. +.-+...+|+.--+. =+.++..+...++.
T Consensus 353 H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm 427 (480)
T PLN02555 353 HPSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTD--AVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEAT 427 (480)
T ss_pred CCccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHH--HHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHh
Confidence 45677777 3588889999999999999988 343322 111222335543331 14566666666666
Q ss_pred cCHHHHHHHHHHHHH
Q 002443 807 SDVTALANLRMSLRD 821 (921)
Q Consensus 807 ~d~~~~~~~r~~~~~ 821 (921)
.++ .-+.+|++.++
T Consensus 428 ~~~-~g~~~r~ra~~ 441 (480)
T PLN02555 428 VGE-KAAELKQNALK 441 (480)
T ss_pred cCc-hHHHHHHHHHH
Confidence 553 23455555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0017 Score=44.06 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002443 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
+|+++|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.023 Score=53.93 Aligned_cols=96 Identities=20% Similarity=0.123 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 002443 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (921)
+.+...|......++.+.++..+++++...... ..+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556777788899999999999999864321 1355667778889999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002443 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (921)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (921)
+++..+|.+-.++..+..++...|+..+|++.|++..+
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0024 Score=43.31 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002443 337 CNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
++.+|.++...|++++|+++|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.16 Score=49.11 Aligned_cols=120 Identities=22% Similarity=0.134 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 002443 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTA 210 (921)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A 210 (921)
+.....++....++....+ ......++..+...+++++|+..++.++....+. .-+-.+|+.+...+|++++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya----~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYA----VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHH----HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555555555554333 2235567788888899999999999888654432 44667899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCh
Q 002443 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (921)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 258 (921)
+..+....... -.+..-...|.++...|+-++|...|++++...++.
T Consensus 146 L~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99887653221 123445678999999999999999999999987554
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.48 Score=50.90 Aligned_cols=166 Identities=25% Similarity=0.297 Sum_probs=97.1
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CC
Q 002443 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RG 239 (921)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 239 (921)
...+++..|...+.++-.. ........++.+|... .+..+|..+|..+. ...++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3457788888888877652 3346778888888764 46888999999543 45667889999999988 45
Q ss_pred CHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC
Q 002443 240 DLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----ML 314 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g 314 (921)
+..+|..+|+++.+..-... .....++..+..=........+...|...|.++.... +..+...+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 99999999999988754432 2233444433331000000112235555555555443 34444445544432 22
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002443 315 KFDMAIVFYELAFHFNPHCAEACNNLG 341 (921)
Q Consensus 315 ~~~~A~~~~~~al~~~p~~~~~~~~la 341 (921)
++.+|...|+++.+... ....+.++
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 44455555555444433 44444444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.015 Score=55.27 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667888889999999999999999999999999999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.28 Score=52.73 Aligned_cols=113 Identities=28% Similarity=0.340 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCC
Q 002443 299 YADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------NLDKAVECYQMALSIKPN 366 (921)
Q Consensus 299 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~ 366 (921)
.+.+.+.+|.+|.. ..+..+|..+|+++.+..... ..+.+.++..|..-. +...|+..|.++....
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 33444445544444 235555555555555543222 233455555554431 2236777777776654
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002443 367 FSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (921)
Q Consensus 367 ~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 416 (921)
+..+...+|.+|.. ..++++|..+|+++-+... ....+.++ ++...|
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 56777777776655 3477788888888877765 66777777 555544
|
|
| >COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.038 Score=62.58 Aligned_cols=164 Identities=17% Similarity=0.081 Sum_probs=115.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
..+.||..+|+ .|.-+-+..+--.++..- .+|++.|.+ +......++.....+ ++++.+.-... ..-...
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g--d~~le~~~~~la~~~---~~~~~~~i~~~-~~la~~ 364 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG--DPELEEALRALASRH---PGRVLVVIGYD-EPLAHL 364 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC--cHHHHHHHHHHHHhc---CceEEEEeeec-HHHHHH
Confidence 33579999977 899899999888888876 899999876 556777777777766 23554433322 234456
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc------------------CCHH
Q 002443 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA------------------KNED 796 (921)
Q Consensus 736 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~------------------~~~~ 796 (921)
.|..+|++|-|+-| +-|.|-++||..|++.|. .++| ||.+.|. .|.+
T Consensus 365 i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv-------~~tG-------GLadTV~~~~~~~~~~~gtGf~f~~~~~~ 430 (487)
T COG0297 365 IYAGADVILMPSRFEPCGLTQLYAMRYGTLPIV-------RETG-------GLADTVVDRNEWLIQGVGTGFLFLQTNPD 430 (487)
T ss_pred HHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE-------cccC-------CccceecCccchhccCceeEEEEecCCHH
Confidence 77889999999988 889999999999954443 4555 5555443 2444
Q ss_pred HH---HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002443 797 EY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 797 ~y---~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 847 (921)
++ +.+|+.+..+++.. +|.-.+..|. ..|.+..-+..+.+.|+.+-.
T Consensus 431 ~l~~al~rA~~~y~~~~~~--w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~ 480 (487)
T COG0297 431 HLANALRRALVLYRAPPLL--WRKVQPNAMG--ADFSWDLSAKEYVELYKPLLS 480 (487)
T ss_pred HHHHHHHHHHHHhhCCHHH--HHHHHHhhcc--cccCchhHHHHHHHHHHHHhc
Confidence 43 45666666776542 4444455554 558899999999999988754
|
|
| >PLN03015 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.017 Score=65.42 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=74.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--------CH----HHHHHHHHHHHHcCCCCCCEEEc
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--------CD----SVRHRFLSTLEQLGLESLRVDLL 724 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~----~~~~~~~~~~~~~gi~~~rv~~~ 724 (921)
.+-|+|.||.+...++++-++-.+.-|...+...||.+..+.. .+ .+.+.+.++....| +++.
T Consensus 266 ~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v~ 340 (470)
T PLN03015 266 ERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVVT 340 (470)
T ss_pred CCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEEE
Confidence 3458899999999999999999999999999999998853210 00 12234444443333 4556
Q ss_pred cCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002443 725 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 725 ~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
++.| +.+.|+ +..+..|+ ..+|-+|++||+++|||+|++|-
T Consensus 341 ~W~P-Q~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 341 QWAP-QVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred ecCC-HHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence 7776 455554 34455566 35788899999999999999983
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.12 Score=56.18 Aligned_cols=135 Identities=11% Similarity=0.100 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHH
Q 002443 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACYE 249 (921)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~ 249 (921)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++...|...-..... .-.+++....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999998888766554443 346788888888
Q ss_pred HHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002443 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (921)
Q Consensus 250 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (921)
+++.......... ..... .....+. ....++..+.......|-.+.|+..++..+++
T Consensus 127 ~~l~~L~~~~~~~----------------~~~~~-~~~~~e~------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 127 KCLRALSRRRSGR----------------MTSHP-DLPELEE------FMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhhccc----------------ccccc-chhhHHH------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8876432211000 00000 0000000 01234556667777777778888888777776
Q ss_pred C
Q 002443 330 N 330 (921)
Q Consensus 330 ~ 330 (921)
+
T Consensus 184 n 184 (321)
T PF08424_consen 184 N 184 (321)
T ss_pred H
Confidence 4
|
|
| >PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.032 Score=61.63 Aligned_cols=229 Identities=12% Similarity=0.086 Sum_probs=117.4
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCC------CCCccEEEecCCCCCCCcccCcc-c
Q 002443 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------LPTIDYRITDSLADPPETKQKHV-E 628 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~ApvQ~~~~G~p~ttG------~~~~Dy~i~d~~~~p~~~~~~~~-e 628 (921)
-++-..++..++||+|=..|+.+. +.+++.|...+-+-+.---...| .+..|-++++- |+....+. +
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s~--p~~~aa~~~~~p~~i~e~n~~~g~~nr~~~~~a~~v~~~f----~~~~~~~~~~ 154 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVSV--PVVIGGWLNRVPVLLHESDMTPGLANKIALRFASKIFVTF----EEAAKHLPKE 154 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhhH--HHHHHHHHcCCCEEEECCCCCccHHHHHHHHhhCEEEEEc----cchhhhCCCC
Confidence 456778999999999987777752 33344333333222222112233 34466666542 12222332 3
Q ss_pred ceEEcCCCccccCCCCCCC---CCCCCCCCCCCCeEEEec---CCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHH
Q 002443 629 ELIRLPECFLCYTPSPEAG---PVCPTPALTNGFITFGSF---NNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 702 (921)
Q Consensus 629 ~~~~lp~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 702 (921)
+++..-. +-.+..... ..+...+++++..++..+ +-...++..+..++..+. ++-++++.++.. .
T Consensus 155 k~~~tG~---Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~~vv~~~G~~---~ 225 (352)
T PRK12446 155 KVIYTGS---PVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKYQIVHLCGKG---N 225 (352)
T ss_pred CeEEECC---cCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCcEEEEEeCCc---h
Confidence 3322110 001100000 001112333343333222 223445444444444443 234555554431 1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCc----ccccc
Q 002443 703 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV----HAHNV 777 (921)
Q Consensus 703 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~----~~~r~ 777 (921)
....+ .. . .++...+... ++.-..|..||+++ . +|++|+.|++++|+|.|..|=.. .....
T Consensus 226 ~~~~~----~~--~--~~~~~~~f~~--~~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~ 291 (352)
T PRK12446 226 LDDSL----QN--K--EGYRQFEYVH--GELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQIL 291 (352)
T ss_pred HHHHH----hh--c--CCcEEecchh--hhHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHH
Confidence 22211 11 1 1333334431 23445677799999 5 69999999999999999886432 22345
Q ss_pred hhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHHH
Q 002443 778 GVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 778 ~~~~l~~~gl~~~i~~---~~~~y~~~a~~l~~d~~~~~ 813 (921)
-+..+...|....+.. +.+...+....+.+|++.++
T Consensus 292 Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 292 NAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred HHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH
Confidence 5677888888765543 56788888888888986653
|
|
| >PLN02152 indole-3-acetate beta-glucosyltransferase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.04 Score=62.59 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHH--HHHHHHcCCCCCCEEEccCcCCc
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRF--LSTLEQLGLESLRVDLLPLILLN 730 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~--~~~~~~~gi~~~rv~~~~~~~~~ 730 (921)
+.|+|.||.+...++++.++-.+.-|.+.|...||.+..+... ......+ -+.|.+. + .+|..+.++.| +
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~P-Q 337 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCS-Q 337 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCC-H
Confidence 4588999999999999999999999999999999987642110 0000000 1112211 2 36777778877 4
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002443 731 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 731 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
.+.|+- ..+-.|+ ..+|.+|++||+++|||+|++|-
T Consensus 338 ~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~ 373 (455)
T PLN02152 338 IEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPM 373 (455)
T ss_pred HHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 554432 3333455 34888899999999999999984
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0025 Score=43.22 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
++++.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777777777777777777777774
|
... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.5 Score=48.51 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=69.5
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 122 (921)
.+.+.|+.......+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|...
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 3788899999999999999999999999999999999999999998887776 9999999999999999998876443
|
|
| >PLN02534 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.027 Score=64.55 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=70.9
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH-HHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF-LSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~-~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
..|+|-||.+...+.++-+.-.+.-|+..+...||.+..+...+.....+ -+-|.+. +...++++.++++ +.+.++
T Consensus 283 ~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~p-q~~iL~- 359 (491)
T PLN02534 283 RSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAP-QVLILS- 359 (491)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCC-HHHHhc-
Confidence 45789999999999988888777889999999999886321111111111 0122221 2235677788887 444443
Q ss_pred cccccE--EecCCCCCCcccHHHHhhcCCcEEecCC
Q 002443 737 YSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 737 ~~~~Dv--~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
..+| |+ ..+|.+|++||+++|||+|++|-
T Consensus 360 --h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 360 --HPAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred --CCccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 3444 54 35888899999999999999986
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.7 Score=48.16 Aligned_cols=93 Identities=11% Similarity=0.031 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 002443 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAESYHKALS 144 (921)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 144 (921)
.-..+|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|...|.-.+..+. .+.|...+.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 446678999999999999999998888888889999999999999999999999999987777665 9999999999999
Q ss_pred cCCCChHhHHHHHH
Q 002443 145 ADPSYKPAAECLAI 158 (921)
Q Consensus 145 ~~p~~~~~~~~la~ 158 (921)
.+|+++..+...-.
T Consensus 169 ~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFR 182 (568)
T ss_pred cCCCChHHHHHHHH
Confidence 99999887665433
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0022 Score=66.56 Aligned_cols=90 Identities=24% Similarity=0.280 Sum_probs=74.6
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (921)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (921)
+..|.+++|++.|..+++++|.....+...+.++.++++...|++.+..+++++|+...-|-..+.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34577888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhcCCC
Q 002443 425 YEQCLKIDPD 434 (921)
Q Consensus 425 ~~~al~l~P~ 434 (921)
++.+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 8888887655
|
|
| >PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.023 Score=62.44 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=85.1
Q ss_pred CCCCeEEEecCCCCcCC-H----HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCc
Q 002443 656 TNGFITFGSFNNLAKIT-P----KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 730 (921)
Q Consensus 656 ~~~~~~~~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 730 (921)
..+.+++.++.+..... + .+..+..++.+. ++..+++...+ .+.....+.+.+.+. ++|.+.+..+ +
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn--~p~~~~~i~~~l~~~----~~v~~~~~l~-~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHN--NPRGSDIIIEKLKKY----DNVRLIEPLG-Y 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S---HHHHHHHHHHHTT-----TTEEEE-----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecC--CchHHHHHHHHhccc----CCEEEECCCC-H
Confidence 34556688888887777 5 555666666665 66666665442 245667776666665 2999998876 7
Q ss_pred HHHHHhcccccEEecCCCCCCcccHH-HHhhcCCcEEecC--CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhc
Q 002443 731 HDHMQAYSLMDISLDTFPYAGTTTTC-ESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 807 (921)
Q Consensus 731 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~-eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~ 807 (921)
.+|+.++..||+++ -+.| +.. ||.++|+|||++. |+...+|.. |-.-+|..+.++-.+...+...
T Consensus 250 ~~~l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 250 EEYLSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceEEeCCCHHHHHHHHHHHHh
Confidence 89999999999997 6666 788 9999999999985 555555543 5455666777777666666666
Q ss_pred CH
Q 002443 808 DV 809 (921)
Q Consensus 808 d~ 809 (921)
+.
T Consensus 318 ~~ 319 (346)
T PF02350_consen 318 DK 319 (346)
T ss_dssp -H
T ss_pred Ch
Confidence 63
|
1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.22 Score=54.13 Aligned_cols=147 Identities=15% Similarity=0.092 Sum_probs=117.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002443 287 AYYKKALYYNWHYADAMYNLGVAYGEMLK------------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 354 (921)
.-+++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677888899999999988876655432 456788999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC----C--------------CHHHHHHHHHHHH
Q 002443 355 ECYQMALSIKPNFSQSLNNLGVVYTV---QGKMDAAAEMIEKAIAANP----T--------------YAEAYNNLGVLYR 413 (921)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~l~~al~~~p----~--------------~~~~~~~la~~~~ 413 (921)
+-+++++..+|++...|..+-..... .-.+++....|.+++..-. . ...++..+.....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888766554433 3357788888888776411 0 1346677788889
Q ss_pred HcCCHHHHHHHHHHHhhcCC
Q 002443 414 DAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 414 ~~g~~~~A~~~~~~al~l~P 433 (921)
..|-.+.|+..++..++++=
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HCCchHHHHHHHHHHHHHHc
Confidence 99999999999999999864
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.82 Score=51.12 Aligned_cols=297 Identities=11% Similarity=-0.019 Sum_probs=164.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (921)
+....|.-+++...+-++-...+-....-..+...++.....+...++. +...+.+....+..|+++......+..+.
T Consensus 199 vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~ 278 (546)
T KOG3783|consen 199 VVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILS 278 (546)
T ss_pred HHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHH
Confidence 3344566666666665554433222221111122233333333333333 44445555566678999988999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHH-HHHHhhhhhh-hh
Q 002443 203 ELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKV-KL 278 (921)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~lg~~~-~~ 278 (921)
..|+.+.|+..++..++..-. ..-.++.+|.++..+.++..|...+....+.+.-....+..++ -++..-.... ..
T Consensus 279 ~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~ 358 (546)
T KOG3783|consen 279 IKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGA 358 (546)
T ss_pred HcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhc
Confidence 999988888888888761111 2345678888899999999999999988877654443333333 2222211111 12
Q ss_pred cCCHHHHHHHHHHHHH---hCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHc--C
Q 002443 279 EGDINQGVAYYKKALY---YNWHYAD---AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE--ACNNLGVIYKDR--D 348 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~---~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~--g 348 (921)
.++-++|..+.+...+ ..|.+.. .....+.-+...+. .++.... .+..++.++..- .
T Consensus 359 ~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------------~~~~~~la~P~~El~Y~Wngf~~~ 425 (546)
T KOG3783|consen 359 GGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------------LNASILLASPYYELAYFWNGFSRM 425 (546)
T ss_pred ccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------ccccccccchHHHHHHHHhhcccC
Confidence 3355555544443322 2222111 11111111111110 1111111 123333333221 1
Q ss_pred CHHHHHHHHHHHH---hh-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcC
Q 002443 349 NLDKAVECYQMAL---SI-KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NPT----YAEAYNNLGVLYRDAG 416 (921)
Q Consensus 349 ~~~~A~~~~~~al---~~-~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~p~----~~~~~~~la~~~~~~g 416 (921)
..++.. -++..+ +. ++++ .--+..+|.++..+|+...|..+++..++. ..+ .+.+++.+|.+|..+|
T Consensus 426 s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~ 504 (546)
T KOG3783|consen 426 SKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLG 504 (546)
T ss_pred ChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcc
Confidence 222222 111111 11 2222 224567899999999999999999988854 111 2679999999999999
Q ss_pred C-HHHHHHHHHHHhhcCCCC
Q 002443 417 S-ISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 417 ~-~~~A~~~~~~al~l~P~~ 435 (921)
. ..++..++.+|-+...++
T Consensus 505 g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 505 GGLKEARALLLKAREYASDY 524 (546)
T ss_pred cChHHHHHHHHHHHhhcccc
Confidence 9 999999999998877554
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.5 Score=46.06 Aligned_cols=205 Identities=13% Similarity=0.049 Sum_probs=128.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CC--CC
Q 002443 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVKL---DP--QN 115 (921)
Q Consensus 51 ~l~~a~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p--~~ 115 (921)
.+..+......+++++++..|.+++.. .|.+ ......+|..+...|++++-.......-.. -+ ..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 377788888889999999999999874 2222 246788999999999988766555443221 11 11
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CC
Q 002443 116 ACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DP 188 (921)
Q Consensus 116 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p 188 (921)
+.....+-... ...+....-+..+..+++......... ..-.+-..+...|...++|.+|+......+.. .+
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtF-LRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTF-LRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 12222222222 223344455555555555433322221 11223445677888899999999888776644 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 002443 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----PMY--AEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (921)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (921)
.-.+++..-..+|+...+..+|...+..|-... |.. ...-..-|.++..-.+|..|..+|-++++-..
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 245667777888999999999988887775431 211 22233346666777899999999988887543
|
|
| >PRK09814 beta-1,6-galactofuranosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.018 Score=63.27 Aligned_cols=113 Identities=9% Similarity=0.038 Sum_probs=74.9
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC------------CCCCcc
Q 002443 686 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF------------PYAGTT 753 (921)
Q Consensus 686 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~------------~~~g~~ 753 (921)
.|+.+|++.|.+... . .. .++|.|.|.++ .++....|.. |+.|-+. .++...
T Consensus 188 ~~~~~l~i~G~g~~~----~---------~~-~~~V~f~G~~~-~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~ 251 (333)
T PRK09814 188 SQGIKLTVFGPNPED----L---------EN-SANISYKGWFD-PEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPH 251 (333)
T ss_pred CCCCeEEEECCCccc----c---------cc-CCCeEEecCCC-HHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchH
Confidence 578899998866321 1 22 37999999987 5777777765 6554322 356666
Q ss_pred cHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002443 754 TTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDL 822 (921)
Q Consensus 754 t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~ 822 (921)
-+.++|++|+|||+...... +-+... +-..+++.+.++..+....+ +++.+.+++++.++.
T Consensus 252 K~~~ymA~G~PVI~~~~~~~-----~~~V~~-~~~G~~v~~~~el~~~l~~~--~~~~~~~m~~n~~~~ 312 (333)
T PRK09814 252 KLSLYLAAGLPVIVWSKAAI-----ADFIVE-NGLGFVVDSLEELPEIIDNI--TEEEYQEMVENVKKI 312 (333)
T ss_pred HHHHHHHCCCCEEECCCccH-----HHHHHh-CCceEEeCCHHHHHHHHHhc--CHHHHHHHHHHHHHH
Confidence 78999999999998433211 122333 33445566888888877775 356778888888775
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.014 Score=59.46 Aligned_cols=79 Identities=25% Similarity=0.193 Sum_probs=60.8
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
.++...+..|.-....|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3445556667777778888888888888888888888888888888877788888888888888888888777766554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.18 Score=55.56 Aligned_cols=143 Identities=17% Similarity=0.049 Sum_probs=99.6
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHH
Q 002443 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGV 342 (921)
Q Consensus 292 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~ 342 (921)
.+..+|-..+++..++.++..+|+.+.|.+++++|+-. + +.| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34668888999999999999999998888888887632 1 112 234556667
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHc
Q 002443 343 IYKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDA 415 (921)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~~la~~~~~~ 415 (921)
.+.+.|-+..|.++.+-.+.++|. ++- +.+.+-....+.++++--++.++....... ..+...+.++.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 777888888888888888888887 554 344444445566777766666665544211 1235667777777777
Q ss_pred CCH---------------HHHHHHHHHHhhcCCC
Q 002443 416 GSI---------------SLAIDAYEQCLKIDPD 434 (921)
Q Consensus 416 g~~---------------~~A~~~~~~al~l~P~ 434 (921)
++. ++|...+++|+...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 777 7778888887777764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.038 Score=60.61 Aligned_cols=140 Identities=19% Similarity=0.232 Sum_probs=86.5
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC
Q 002443 669 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 748 (921)
Q Consensus 669 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 748 (921)
.++.|.++++-.++.+..|+-++++-..+ ....+.+.+.+...+.+.. +.+.. .+-...+..||++|
T Consensus 199 ~rllP~~l~aa~~l~~~~p~l~fvvp~a~---~~~~~~i~~~~~~~~~~~~-~~~~~-----~~~~~~m~~ad~al---- 265 (373)
T PF02684_consen 199 KRLLPIFLEAAKLLKKQRPDLQFVVPVAP---EVHEELIEEILAEYPPDVS-IVIIE-----GESYDAMAAADAAL---- 265 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCC---HHHHHHHHHHHHhhCCCCe-EEEcC-----CchHHHHHhCcchh----
Confidence 45669999999999999999999886533 2333345555566555432 33221 12233455699998
Q ss_pred CCCcccHHHHhhcCCcEEec-CCCcccccchhHHH--hhcCCcc----------ccc--CCHHHHHHHHHHHhcCHHHHH
Q 002443 749 YAGTTTTCESLYMGVPCVTM-AGSVHAHNVGVSLL--TKVGLKH----------LIA--KNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 749 ~~g~~t~~eal~~GvPvvt~-~g~~~~~r~~~~~l--~~~gl~~----------~i~--~~~~~y~~~a~~l~~d~~~~~ 813 (921)
-..||.|+|+..+|+|.|.. ....+--.++--++ .-+||+. ++- -+++.-.+.+..+..|.+.+.
T Consensus 266 ~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 266 AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRK 345 (373)
T ss_pred hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHH
Confidence 67899999999999996553 33222111221121 1245544 442 367777788888999987655
Q ss_pred HHHHHHHH
Q 002443 814 NLRMSLRD 821 (921)
Q Consensus 814 ~~r~~~~~ 821 (921)
..+...+.
T Consensus 346 ~~~~~~~~ 353 (373)
T PF02684_consen 346 KQKELFRE 353 (373)
T ss_pred HHHHHHHH
Confidence 54444433
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process |
| >TIGR00661 MJ1255 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.043 Score=59.97 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=53.9
Q ss_pred CCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCc-ccccchhHHHhhcCCcccccCCH
Q 002443 719 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIAKNE 795 (921)
Q Consensus 719 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~i~~~~ 795 (921)
+++.+.+..+ .++...+..||+++-. +|.+|++||+++|+|+|..+-.. +....-+-.|...|+...+-.+.
T Consensus 229 ~~v~~~~~~~--~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 229 ENVEIRRITT--DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCEEEEECCh--HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhh
Confidence 6888877653 4677777889999942 56678999999999999988653 34556777888889886664433
|
This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=3.6 Score=47.21 Aligned_cols=173 Identities=19% Similarity=0.133 Sum_probs=85.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHH
Q 002443 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---------ACAHTHCGILYK 127 (921)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~ 127 (921)
.+...=..++|+++ ++.+| ++..|..+|......-.++-|...|-+.-.. +.- ..--...+.+-.
T Consensus 672 ~Lve~vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~ 745 (1189)
T KOG2041|consen 672 NLVEAVGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA 745 (1189)
T ss_pred HHHHHhchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh
Confidence 33444456677666 34444 5788888888888877777777777654221 110 000122344444
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 002443 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELM 205 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 205 (921)
--|++++|.+.|-.+-+.+ ++ ...+.+.|++-...+.++..-.-+ .....++.++|..+..+.
T Consensus 746 ~~g~feeaek~yld~drrD---------LA------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~ 810 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRD---------LA------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMM 810 (1189)
T ss_pred hhcchhHhhhhhhccchhh---------hh------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4577777777764432110 00 011222344444444333211110 111344555555555555
Q ss_pred CHHHHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002443 206 QYDTALGCYEKA----------------------ALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 206 ~~~~A~~~~~~a----------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
.+++|.++|.+. ...-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 811 ~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 811 EWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 555555555443 122345555555566666666666666655543
|
|
| >PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.077 Score=57.01 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=120.0
Q ss_pred HHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCCCCCccEEEecCCCCCCCcccCcccceEEcCCCccccC
Q 002443 562 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYT 641 (921)
Q Consensus 562 i~~d~idiLvdl~g~t~~~r~~~~a~r~ApvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~ 641 (921)
+.....|++|=..+.|...-+.+=.....++.+..++.|..- ...+|++|+-.+-.++ -..+++..++.....+
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~ 126 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEHDRLP-----RGPNVLPTLGAPNRIT 126 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcccCcC-----CCCceEecccCCCcCC
Confidence 444679999977766654434333334676788889999665 8899999974332221 2345666655432222
Q ss_pred CCCCCCCC----CCCCC--CCCCCeEEEecCCCCcCCHH----HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 002443 642 PSPEAGPV----CPTPA--LTNGFITFGSFNNLAKITPK----VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 711 (921)
Q Consensus 642 ~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 711 (921)
|....... ..... -+-..|.+|--++.++++++ +++...++.+..+ ..++|....-..+.+.+.|.+.+
T Consensus 127 ~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~ 205 (311)
T PF06258_consen 127 PERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELL 205 (311)
T ss_pred HHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhh
Confidence 22111100 00111 23345778888899999998 4555566677766 55665543333445666666655
Q ss_pred HHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccc
Q 002443 712 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 777 (921)
Q Consensus 712 ~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 777 (921)
+ +...+.+....+ ..-|++.+..||.++-|--. -+=..||++.|.||..++-+.-.+|+
T Consensus 206 ~----~~~~~~~~~~~~-~nPy~~~La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~~l~~~~~r~ 264 (311)
T PF06258_consen 206 K----DNPGVYIWDGTG-ENPYLGFLAAADAIVVTEDS--VSMVSEAAATGKPVYVLPLPGRSGRF 264 (311)
T ss_pred c----CCCceEEecCCC-CCcHHHHHHhCCEEEEcCcc--HHHHHHHHHcCCCEEEecCCCcchHH
Confidence 4 235663334444 34588888899999854322 12368999999998887655433444
|
The function of this family is unknown. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.3 Score=53.79 Aligned_cols=104 Identities=19% Similarity=0.014 Sum_probs=67.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHHHH
Q 002443 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DP------------QN---ACAHTHCGIL 125 (921)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~la~~ 125 (921)
+..+|-+.+.++.++.++..+|+.+.|.+.+++|+-. ++ .| -.+++.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 5678999999999999999999999999988888632 11 11 1234455566
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-ChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002443 126 YKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (921)
+.+.|-+..|.++.+-.+.++|. ++-. ++..+-....+.++++--++.++...
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g------~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLG------VLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcch------hHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 67777788888888888888777 3332 12222233344555555555555433
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PRK02797 4-alpha-L-fucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.2 Score=52.34 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=100.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcC-CcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002443 657 NGFITFGSFNNLAKITPKVLQVWARILCAVP-NSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p-~~~l~~-~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
.+.+|+-.-|+..+-+ .-+++...|.+... +.++++ .+-|..++.-++++++...++.- ++++..+-....-++|+
T Consensus 144 ~~~~tIlvGNSgd~SN-~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl 221 (322)
T PRK02797 144 AGKMTILVGNSGDRSN-RHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFG-AENFQILTEKLPFDDYL 221 (322)
T ss_pred CCceEEEEeCCCCCcc-cHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC-cccEEehhhhCCHHHHH
Confidence 3456665555555444 44555555555443 344443 23333677788888888887764 37777655544469999
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 002443 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 735 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~d~~~~~ 813 (921)
+.++.|||..=-|.= -|--|+|=.+.+|+|||-..-.+ .-..|...|++=+-..+.= |.....
T Consensus 222 ~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~-----fwqdl~e~gv~Vlf~~d~L-----------~~~~v~ 285 (322)
T PRK02797 222 ALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNP-----FWQDLTEQGLPVLFTGDDL-----------DEDIVR 285 (322)
T ss_pred HHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCc-----hHHHHHhCCCeEEecCCcc-----------cHHHHH
Confidence 999999999866654 44448889999999999733332 2345778888875322211 222222
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002443 814 NLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 814 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 844 (921)
+.++++...-...-.|..+.++..+.++|..
T Consensus 286 e~~rql~~~dk~~I~Ff~pn~~~~W~~~l~~ 316 (322)
T PRK02797 286 EAQRQLASVDKNIIAFFSPNYLQGWRNALAI 316 (322)
T ss_pred HHHHHHHhhCcceeeecCHhHHHHHHHHHHH
Confidence 2222222221111226677777776666654
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.049 Score=47.56 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=75.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 002443 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (921)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (921)
+|..++.+|++-+|+++.+..+...+++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888766 566677877765542 2358899999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002443 120 THCGILYKDEGRLVEAAESYHKALSA 145 (921)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~ 145 (921)
+.+|.-+-....|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998877777888888888888765
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.7 Score=44.28 Aligned_cols=208 Identities=17% Similarity=0.096 Sum_probs=122.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHH
Q 002443 86 IGKGICLQMQNMGRLAFDSFSEAVKL--DPQN--------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (921)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (921)
...+......+++++++..|...+.. .|.+ -.....++.++.+.|+..+-.......-........+.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak-- 85 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK-- 85 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH--
Confidence 45556666677788999999888874 2221 24567899999999998876665554432211111110
Q ss_pred HHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--C
Q 002443 156 LAIVLTDLGT-SLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE----R--P 222 (921)
Q Consensus 156 la~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p 222 (921)
.+.+...+-. +....+....-+..+..+++..... -..-..+..+|...++|.+|+......+.. + +
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 1111222211 1222344455556666655542221 123346788999999999999988877642 2 2
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh
Q 002443 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (921)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 295 (921)
.-.+++..-..+|....+..+|...+..|-.....-.-.....+.+-..-|-.+....+|..|..+|-++++-
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 2356677778888899999999888877654322111011112333334455556667788888888777754
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.013 Score=39.54 Aligned_cols=29 Identities=34% Similarity=0.681 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002443 337 CNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
++.+|.++..+|++++|+++|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444444444444444444444333
|
... |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.025 Score=57.69 Aligned_cols=67 Identities=27% Similarity=0.343 Sum_probs=60.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHH
Q 002443 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (921)
Q Consensus 378 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~ 444 (921)
..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-++|-+|+.++|.+.++..|+.-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4678999999999999999999999999999999999999999999999999999999998887643
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=4 Score=45.88 Aligned_cols=83 Identities=6% Similarity=-0.087 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 002443 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (921)
Q Consensus 101 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~ 180 (921)
..+.+....+..|+++......+.++...|+.+.|+..++..++ ..........++.+|.++.-+.+|..|-..+
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~ 326 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAADSF 326 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444455666666666666666666666666666666554 2222223444566666666666666666666
Q ss_pred HHHHhhCC
Q 002443 181 YEALKIDP 188 (921)
Q Consensus 181 ~~al~~~p 188 (921)
....+.+.
T Consensus 327 ~~L~desd 334 (546)
T KOG3783|consen 327 DLLRDESD 334 (546)
T ss_pred HHHHhhhh
Confidence 66655543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0067 Score=41.79 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002443 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
+.+||.+|..+|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666666666666666664433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=3.6 Score=45.16 Aligned_cols=134 Identities=11% Similarity=0.004 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
++..-.-.......|+.-.|-+....++...|.++......+.+...+|.|+.|...+..+-+.-.....+...+-....
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH 368 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh
Confidence 33333344455678999999999999999999999988899999999999999988877665543333344444455556
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002443 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (921)
..|++++|...-+-.+...-+.++. ...-+......|-++++.-++++.+.++|
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 6666666666666555443333332 11111222233455555555555555543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.013 Score=39.15 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566667777777777777777777666665
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.28 Score=49.42 Aligned_cols=195 Identities=12% Similarity=-0.014 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHcC
Q 002443 61 RNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----PQNA-CAHTHCGILYKDEG 130 (921)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~g 130 (921)
..+.++|+.-|+++++..++.. .++-.+..+.+.+++|++-++.|.+.+..- .+.. .....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4589999999999999988754 477778889999999999999988877531 1111 11111111122333
Q ss_pred CHHHHHHHHHHHHhcC--CCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------------CCHHHHHH
Q 002443 131 RLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------HYAPAYYN 196 (921)
Q Consensus 131 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~ 196 (921)
+.+--.+.|+..+..- .++...|+ ..-..+|.+++..+.|.+-.+.+.+.-.... ...++|..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 4444444554443321 11111111 1134567777777888777777666544311 12455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHCCCHHHHHHHHHHHHHhCCCh
Q 002443 197 LGVVYSELMQYDTALGCYEKAALERPMY--AEAYC----NMGVIYKNRGDLESAIACYERCLAVSPNF 258 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~ 258 (921)
-...|..+.+..+-...|++++.+...- +.+.- .=|..+.+.|++++|..-|-++.+...+.
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 6778888888888888999998775432 22221 12455778899999998888888765443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.4 Score=50.23 Aligned_cols=253 Identities=14% Similarity=0.045 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHH---HHHHHHHHHcCChH
Q 002443 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL---TDLGTSLKLAGNTQ 174 (921)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~~lg~~~~~~g~~~ 174 (921)
.++|+++. +.+| ++..|..+|......-.++-|...|-+.-.. +.-.- ...+..++ ...+.+-..-|+++
T Consensus 679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~-vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKL-VKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhH-HHHhhhhhhHHHHhHhHhhhhcchh
Confidence 44555443 3344 6889999999888888888888877665321 11100 00111111 12233344458999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002443 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (921)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (921)
+|.+.|-.+-..+ .-..++.+.|+|-...+.++..-... .....++.++|..+..+..+++|.++|.++-
T Consensus 752 eaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998886543221 12345667777777666665422111 1235689999999999999999999998764
Q ss_pred HhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002443 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (921)
Q Consensus 253 ~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 332 (921)
.. .++..+++.+ ..+++ ++.....-|++...+-.+|.++...|.-++|.+.|-+.- .|.
T Consensus 824 ~~--------e~~~ecly~l-------e~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk 882 (1189)
T KOG2041|consen 824 DT--------ENQIECLYRL-------ELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK 882 (1189)
T ss_pred ch--------HhHHHHHHHH-------Hhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH
Confidence 32 2334445443 23333 233444567888888889999999999999988775531 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 394 (921)
+ -...+..++++.+|.++.++-- -|.-.......+.-+...++.-+|++..+++
T Consensus 883 ---a---Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 ---A---AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1123445566667766554421 1222222233334455566666666666665
|
|
| >TIGR02094 more_P_ylases alpha-glucan phosphorylases | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.35 Score=56.96 Aligned_cols=173 Identities=13% Similarity=0.122 Sum_probs=102.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHc----CCcEEEEecCCCCCHH----HHHHHHHHHHHcCCCCCCEEEccCc
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAV----PNSRLVVKCKPFCCDS----VRHRFLSTLEQLGLESLRVDLLPLI 727 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~~~~~~~~~~~----~~~~~~~~~~~~gi~~~rv~~~~~~ 727 (921)
+.+++|...|+ +|..+-++....++++-. .+.++++.|++...+. ..+.+....++-.+ ++||+|...-
T Consensus 388 d~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~~~Y 466 (601)
T TIGR02094 388 DVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFLENY 466 (601)
T ss_pred CCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEEcCC
Confidence 44567777766 898888888877776421 3578888887643322 33444443333223 4799997652
Q ss_pred CCcHHHHH--hcccccEEec-CC-CC-CCcccHHHHhhcCCcEEecCC-CcccccchhHHHhhcCCcccc----------
Q 002443 728 LLNHDHMQ--AYSLMDISLD-TF-PY-AGTTTTCESLYMGVPCVTMAG-SVHAHNVGVSLLTKVGLKHLI---------- 791 (921)
Q Consensus 728 ~~~~~~~~--~~~~~Dv~Ld-~~-~~-~g~~t~~eal~~GvPvvt~~g-~~~~~r~~~~~l~~~gl~~~i---------- 791 (921)
..-++ .+..|||+|- |+ |+ ..||+-+=||.-|++.+|.-. -.-..-- |-..|.
T Consensus 467 ---d~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~--------~~nGf~f~~~~~~~~~ 535 (601)
T TIGR02094 467 ---DINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD--------GDNGWAIGDGEEYDDE 535 (601)
T ss_pred ---CHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC--------CCcEEEECCCcccccc
Confidence 23333 4578999999 77 48 889999999999999887543 2111100 111221
Q ss_pred ----cCCHHHHHH---HHH-HHhcC-HHH--HHHHHHHHHHHhhc-CCCCChHHHHHHHHHHH
Q 002443 792 ----AKNEDEYVQ---LAL-QLASD-VTA--LANLRMSLRDLMSK-SPVCDGQNFALGLESTY 842 (921)
Q Consensus 792 ----~~~~~~y~~---~a~-~l~~d-~~~--~~~~r~~~~~~~~~-~~~~~~~~~~~~~e~~~ 842 (921)
..|.+++.+ .++ .+-.| ++. -..+.+-.+..|.+ .|.|++.++++++.+.|
T Consensus 536 ~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 536 EEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 134444333 444 44433 111 12233334444443 56899999999988876
|
This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343. |
| >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.34 Score=52.81 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=92.0
Q ss_pred CcCCHH-HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC------------CEEEccCcCCcHHHHH
Q 002443 669 AKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL------------RVDLLPLILLNHDHMQ 735 (921)
Q Consensus 669 ~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~------------rv~~~~~~~~~~~~~~ 735 (921)
....++ .++++.+++++.||..|+++-.. ++--..+.+.++++|+... .|.+... -.+...
T Consensus 240 H~GEeei~l~~~~~l~~~~~~~llIlVPRH---pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt---mGEL~l 313 (419)
T COG1519 240 HEGEEEIILDAHQALKKQFPNLLLILVPRH---PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT---MGELGL 313 (419)
T ss_pred CCchHHHHHHHHHHHHhhCCCceEEEecCC---hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec---HhHHHH
Confidence 666666 88999999999999999998533 2333456666777766432 3333222 257888
Q ss_pred hcccccEEec--CCCCCCcccHHHHhhcCCcEEecCCCcc-cccchhHHHhhcCCcccccCCHHHHHHHHHHHh-cCHHH
Q 002443 736 AYSLMDISLD--TFPYAGTTTTCESLYMGVPCVTMAGSVH-AHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA-SDVTA 811 (921)
Q Consensus 736 ~~~~~Dv~Ld--~~~~~g~~t~~eal~~GvPvvt~~g~~~-~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~-~d~~~ 811 (921)
.|.++||+.- ||-=.||--.+|++++|+|||+ |+.. --+..+-.|...|-. +++++ ++.+..++.+. +|++.
T Consensus 314 ~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~--Gp~~~Nf~ei~~~l~~~ga~-~~v~~-~~~l~~~v~~l~~~~~~ 389 (419)
T COG1519 314 LYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIF--GPYTFNFSDIAERLLQAGAG-LQVED-ADLLAKAVELLLADEDK 389 (419)
T ss_pred HHhhccEEEECCcccCCCCCChhhHHHcCCCEEe--CCccccHHHHHHHHHhcCCe-EEECC-HHHHHHHHHHhcCCHHH
Confidence 8999999853 3322666679999999999998 4322 122222223333332 44566 56666666555 55877
Q ss_pred HHHHHHHHHHHh
Q 002443 812 LANLRMSLRDLM 823 (921)
Q Consensus 812 ~~~~r~~~~~~~ 823 (921)
+.++.+...+-+
T Consensus 390 r~~~~~~~~~~v 401 (419)
T COG1519 390 REAYGRAGLEFL 401 (419)
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=6.8 Score=46.83 Aligned_cols=124 Identities=10% Similarity=-0.050 Sum_probs=83.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002443 306 LGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (921)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 381 (921)
++..-....+.+.|...+.+......-+ ..+...+|.-....+..++|..++..+..... +.........+....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHc
Confidence 3444445667788888888764444322 23344455444444336788888887654432 333344444455688
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002443 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 382 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
++++.+..++...-....+.....|.+|..+..+|+.++|..+|+++..
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998888888775444445678999999999999999999999999854
|
|
| >PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.033 Score=63.23 Aligned_cols=108 Identities=21% Similarity=0.180 Sum_probs=64.2
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh---HHHhhcCCc-----ccccCCHHHHHHHH
Q 002443 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV---SLLTKVGLK-----HLIAKNEDEYVQLA 802 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~---~~l~~~gl~-----~~i~~~~~~y~~~a 802 (921)
+|-....-||+.+=|+-| .=|-|-+|+.+||||.|| ++.++ -+...++-+ ..|-+....|-+.+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsIT-------TnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v 534 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSIT-------TNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESV 534 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEE-------ETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceee-------ccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHH
Confidence 344444559999988877 889999999999999999 44431 111111100 13344444555555
Q ss_pred HHHhc--------CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002443 803 LQLAS--------DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 849 (921)
Q Consensus 803 ~~l~~--------d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 849 (921)
-.|+. +...+..+|.+.++. |.++||+.|...+++||..+.++-
T Consensus 535 ~~la~~l~~f~~~~~rqri~~Rn~ae~L---S~~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 535 NQLADFLYKFCQLSRRQRIIQRNRAERL---SDLADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHH---GGGGBHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhc
Confidence 54443 444555555555433 788999999999999999888774
|
Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.047 Score=59.02 Aligned_cols=143 Identities=12% Similarity=0.011 Sum_probs=110.6
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (921)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 390 (921)
...|+.-.|-+-+..++...|..+......+.+....|+|+.|...+..+-+.-..-..+...+-.-...+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34577777777788888888888888888888888888888888877766555444344555555667788899999888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCC
Q 002443 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (921)
Q Consensus 391 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~ 453 (921)
.+-.+...-+++++...-+..-..+|-+++|.-++++.+.++|....-+.|.+-...|+.+|+
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 888887777777777766777778888999999999999999988777777777777777665
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.56 Score=47.35 Aligned_cols=195 Identities=16% Similarity=0.165 Sum_probs=118.0
Q ss_pred hCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CChHhHHHHHHHHHHHHH
Q 002443 95 QNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADP-----SYKPAAECLAIVLTDLGT 165 (921)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~lg~ 165 (921)
..+.++|+..|++++++.+... .++-.+..++++++++++-.+.|.+.+..-. +..+- .+..++-
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlD---- 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILD---- 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHH----
Confidence 4478999999999999987653 4777888999999999999999988875311 11110 0000111
Q ss_pred HHHHcCChHHHHHHHHHHHhh--CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHH
Q 002443 166 SLKLAGNTQDGIQKYYEALKI--DPHYAP----AYYNLGVVYSELMQYDTALGCYEKAALERP------------MYAEA 227 (921)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~--~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~ 227 (921)
.-....+.+--.+.|+..+.. +..+.. ....+|.+|+..++|.+-.+++++.-.... ...++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 111112222222233322221 112222 234688999999888887777776644321 12345
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC
Q 002443 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296 (921)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 296 (921)
|..-..+|..+.+..+-...|++++.+...-+. ...++.+-..-|..+...|++++|-.-|-++.+..
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 555566777788877778888888876433221 12234444445667777888888877777776553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.7 Score=49.22 Aligned_cols=27 Identities=22% Similarity=0.006 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIV 74 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~a 74 (921)
...|-.+|...+..=+++-|.+.|.++
T Consensus 585 ~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 585 DTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 345666777777777777787777765
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.53 E-value=3.4 Score=42.35 Aligned_cols=216 Identities=13% Similarity=-0.014 Sum_probs=121.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002443 52 LSYANILRSRNKFVDALALYEIVLEKDSG--------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 52 l~~a~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (921)
+.+|+...+.+++++|+..|.+++..... .......++..|...|++..--+.....- +++...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHHHhc
Confidence 77899999999999999999999876221 23466778888888888765444332221 1121111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002443 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
-.+..+..+..++..|..++.......+...+..... .+-...++. ..-..+..++++
T Consensus 80 --------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~-----rEkr~fLr~---------~Le~Kli~l~y~ 137 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWAD-----REKRKFLRL---------ELECKLIYLLYK 137 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH-----HHHHHHHHH---------HHHHHHHHHHHh
Confidence 1122334445555555444332222111111100000 011112222 223457788899
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh
Q 002443 204 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
.|+|.+|+......+.. .++-..++..-..+|....+..++...+..+-.....-.-.....+.+-..-|-...
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 99999999888776542 344566777778888888888888777766544321100000111223333455555
Q ss_pred hcCCHHHHHHHHHHHHHhC
Q 002443 278 LEGDINQGVAYYKKALYYN 296 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~ 296 (921)
...+|..|..+|-++++-.
T Consensus 218 dd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 218 DDRDYKTASSYFIEALEGF 236 (421)
T ss_pred ccccchhHHHHHHHHHhcc
Confidence 6678888888888887653
|
|
| >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.3 Score=54.30 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHH
Q 002443 702 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL 781 (921)
Q Consensus 702 ~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~ 781 (921)
..++.+.+... + .++|.+.+..+ ..+++..+..||+++ -+++...-||..+|+|||++.+ ...+|-.
T Consensus 249 ~i~~~i~~~~~--~--~~~v~l~~~l~-~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~-R~e~~~~--- 315 (365)
T TIGR03568 249 IINEAIEEYVN--E--HPNFRLFKSLG-QERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGT-RQKGRLR--- 315 (365)
T ss_pred HHHHHHHHHhc--C--CCCEEEECCCC-hHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecC-Cchhhhh---
Confidence 34555544421 1 36899999877 789999999999999 4443455899999999998753 2233321
Q ss_pred HhhcCCccc-ccCCHHHHHHHHHHHhcCH
Q 002443 782 LTKVGLKHL-IAKNEDEYVQLALQLASDV 809 (921)
Q Consensus 782 l~~~gl~~~-i~~~~~~y~~~a~~l~~d~ 809 (921)
|-.-+ |..+.++-++.+.+ +.++
T Consensus 316 ----g~nvl~vg~~~~~I~~a~~~-~~~~ 339 (365)
T TIGR03568 316 ----ADSVIDVDPDKEEIVKAIEK-LLDP 339 (365)
T ss_pred ----cCeEEEeCCCHHHHHHHHHH-HhCh
Confidence 33334 55688888877776 4554
|
This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=7.9 Score=46.28 Aligned_cols=323 Identities=7% Similarity=-0.088 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
.+..+..|....+.|++.++.++..++ ..+|- ..+...-......+. .....+...++.+|+.+..-........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 477899999999999999987776663 44443 222222222222221 1222455567778887665544444333
Q ss_pred ---HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002443 128 ---DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (921)
Q Consensus 128 ---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (921)
+.+++..-+.++ ...|.+... ....+......|+.++|.....++-......+.....+-..+.+.
T Consensus 108 ~La~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 108 ELARREDWRGLLAFS----PEKPKPVEA-------RCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHccCHHHHHHhc----CCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHc
Confidence 344554444422 123444332 222334456668877777666666544433333333333333333
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------HHHH-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhh
Q 002443 205 MQYDTALGCYEKAALERPMYAEAYCNMGV-----------IYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (921)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 272 (921)
|......-.-+--+.....+......+.. .... ..+...+...+ ...+............+..+
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~----~~~~~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA----RTTGPTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh----hccCCChhhHHHHHHHHHHH
Confidence 33222221111111111111111111111 1111 11111111111 11111110111111222222
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002443 273 GTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (921)
Q Consensus 273 g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (921)
...+.+.|...+.+......-+. .+...+|.-....+...+|...+..+..... +.+..-....+....+
T Consensus 253 -----ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 253 -----ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred -----HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 35677888888887654443332 2344445444444336777777776554322 3333444444555888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002443 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 396 (921)
+++.+..++...-....+.....+-+|..+...|+.++|..+|+++..
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998888888775444445677889999999999999999999999844
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.031 Score=37.31 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 002443 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114 (921)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (921)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444455555555555555555555444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.27 Score=46.33 Aligned_cols=87 Identities=13% Similarity=-0.050 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (921)
-...++.........++.+++..++..+--..|+.++.-..-|..++..|++.+|+..|+.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 35678888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHH
Q 002443 127 KDEGRLV 133 (921)
Q Consensus 127 ~~~g~~~ 133 (921)
...|+..
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8888754
|
|
| >cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.54 Score=56.63 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=100.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHc----CCcEEEEecCCCCCHHH----HHHHHHHHHHcCCCCCCEEEccCc
Q 002443 658 GFITFGSFNNL--AKITPKVLQVWARILCAV----PNSRLVVKCKPFCCDSV----RHRFLSTLEQLGLESLRVDLLPLI 727 (921)
Q Consensus 658 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~~~~~~~~~~~~----~~~~~~~~~~~gi~~~rv~~~~~~ 727 (921)
+.+|+|-.-|+ +|...-++....++.+-+ ...++++.|++...+.. .+.+.+....-.+. +||+|++.
T Consensus 477 d~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~-~kVvfle~- 554 (778)
T cd04299 477 NVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFR-GRIVFLED- 554 (778)
T ss_pred CccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCC-CcEEEEcC-
Confidence 44566666665 888888887766654311 23678887766533333 33333333322343 69999765
Q ss_pred CCcHHHHH--hcccccEEecCCC--C-CCcccHHHHhhcCCcEEecC-CCcccccchhHHHhhcCCcccccC--------
Q 002443 728 LLNHDHMQ--AYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTKVGLKHLIAK-------- 793 (921)
Q Consensus 728 ~~~~~~~~--~~~~~Dv~Ld~~~--~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~~~gl~~~i~~-------- 793 (921)
+..-++ .+.-|||.|.|+- + ..||+-+=|+.-|++.++.- |---.+- . |-..|.-.
T Consensus 555 --Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~-------g~nGwaig~~~~~~~~ 624 (778)
T cd04299 555 --YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-D-------GENGWAIGDGDEYEDD 624 (778)
T ss_pred --CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-C-------CCCceEeCCCccccCh
Confidence 334444 3477999999994 7 88999999999999988643 3211110 1 22222211
Q ss_pred ------CHH---HHHHHHHH-HhcC------H-HHHHHHHHHHHHHhhcCCCCChHHHHHHH-HHHHHHH
Q 002443 794 ------NED---EYVQLALQ-LASD------V-TALANLRMSLRDLMSKSPVCDGQNFALGL-ESTYRNM 845 (921)
Q Consensus 794 ------~~~---~y~~~a~~-l~~d------~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~ 845 (921)
+.+ +-++.+|. +--| | ...+.+|++++.. .|.|++.++++.+ ++.|.-+
T Consensus 625 ~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~---~p~fs~~Rmv~eY~~~~Y~p~ 691 (778)
T cd04299 625 EYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATL---GPRFSAERMVREYVERFYLPA 691 (778)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHhHHHH
Confidence 111 12333333 3323 2 4566666666554 7899999999775 4555433
|
Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea. |
| >COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.18 Score=54.35 Aligned_cols=140 Identities=17% Similarity=0.230 Sum_probs=79.1
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC
Q 002443 669 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 748 (921)
Q Consensus 669 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 748 (921)
-++-|-++++..++..+.|+.++++-..+ ..-+++...+.......-.+++... +-...+..||++|
T Consensus 203 ~rl~~~f~~a~~~l~~~~~~~~~vlp~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~aD~al---- 269 (381)
T COG0763 203 RRLLPPFVQAAQELKARYPDLKFVLPLVN----AKYRRIIEEALKWEVAGLSLILIDG-----EKRKAFAAADAAL---- 269 (381)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecCc----HHHHHHHHHHhhccccCceEEecCc-----hHHHHHHHhhHHH----
Confidence 45668888998898889999999996443 2323444333333221112333221 2233455599998
Q ss_pred CCCcccHHHHhhcCCcEE-ecCCCcccccchhHHH--hhcCCcccccC------------CHHHHHHHHHHHhcCHHHHH
Q 002443 749 YAGTTTTCESLYMGVPCV-TMAGSVHAHNVGVSLL--TKVGLKHLIAK------------NEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 749 ~~g~~t~~eal~~GvPvv-t~~g~~~~~r~~~~~l--~~~gl~~~i~~------------~~~~y~~~a~~l~~d~~~~~ 813 (921)
-..||.|+|++-+|+|.| +..-..+-..++--++ ..++||.+|+. +++.-.+....|..|...+.
T Consensus 270 ~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~ 349 (381)
T COG0763 270 AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRRE 349 (381)
T ss_pred HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHH
Confidence 567999999999999955 4322222111111111 12455555543 34555556666667765555
Q ss_pred HHHHHHHH
Q 002443 814 NLRMSLRD 821 (921)
Q Consensus 814 ~~r~~~~~ 821 (921)
++.+..++
T Consensus 350 ~~~~~~~~ 357 (381)
T COG0763 350 ALKEKFRE 357 (381)
T ss_pred HHHHHHHH
Confidence 55544433
|
|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.27 Score=56.71 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=77.2
Q ss_pred CcCCHHHHHHHH-HHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC
Q 002443 669 AKITPKVLQVWA-RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 747 (921)
Q Consensus 669 ~K~~~~~~~~~~-~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~ 747 (921)
.++-|.++++.. +.++ ++.++++- ...+..++.+.+.++..++- .+.+... ... ...++.||++|
T Consensus 428 ~rllPv~l~aa~~~~l~--~~l~fvvp---~a~~~~~~~i~~~~~~~~~~--~~~ii~~---~~~-~~~m~aaD~aL--- 493 (608)
T PRK01021 428 LRNLTIQVQAFLASSLA--STHQLLVS---SANPKYDHLILEVLQQEGCL--HSHIVPS---QFR-YELMRECDCAL--- 493 (608)
T ss_pred HHHHHHHHHHHHHHHhc--cCeEEEEe---cCchhhHHHHHHHHhhcCCC--CeEEecC---cch-HHHHHhcCeee---
Confidence 344566666654 1222 24555442 22223345555555443321 1223221 111 24556699999
Q ss_pred CCCCcccHHHHhhcCCcEEecC-CCcccccchhHHHh----hcC----------Ccccc----cCCHHHHHHHHHHHhcC
Q 002443 748 PYAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLT----KVG----------LKHLI----AKNEDEYVQLALQLASD 808 (921)
Q Consensus 748 ~~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~----~~g----------l~~~i----~~~~~~y~~~a~~l~~d 808 (921)
-..||.|+|++.+|+|.|..- -..+.-.++--+++ .+| .||++ .-+++.-.+. +++..|
T Consensus 494 -aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~-l~lL~d 571 (608)
T PRK01021 494 -AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA-LDILKT 571 (608)
T ss_pred -ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH-HHHhcC
Confidence 677999999999999966533 22211112212222 123 36788 3456666654 699999
Q ss_pred HHHHHHHHHHHHHHh
Q 002443 809 VTALANLRMSLRDLM 823 (921)
Q Consensus 809 ~~~~~~~r~~~~~~~ 823 (921)
++.++++++.+++..
T Consensus 572 ~~~r~~~~~~l~~lr 586 (608)
T PRK01021 572 SQSKEKQKDACRDLY 586 (608)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998889988887654
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.71 Score=52.05 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=106.5
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002443 314 LKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (921)
Q Consensus 314 g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 391 (921)
+....++..+...+.+++.+++.+.. +...+...+....+...+..++..+|++..+..+|+......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444666777777788888777544 4777778889889999999999999999999999999988887776666555
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHH
Q 002443 392 EK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (921)
Q Consensus 392 ~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a 445 (921)
.+ +....|.+.+....+ +.....+|+..++....+++.++.|+++.+...++.+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55 888899887765555 8888999999999999999999999998777666554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.046 Score=37.56 Aligned_cols=25 Identities=48% Similarity=0.844 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002443 337 CNNLGVIYKDRDNLDKAVECYQMAL 361 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al 361 (921)
+.++|.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555433
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.97 E-value=12 Score=46.33 Aligned_cols=135 Identities=14% Similarity=0.061 Sum_probs=89.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHhHH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002443 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE---CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 199 (921)
-.++...+.|+.|+..|++.-...|...+.+. ..+..+...+........+++|+..|++.- -.|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 35677788999999999999999987665433 233333333322222235778888887643 35666777889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCh
Q 002443 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPNF 258 (921)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~ 258 (921)
+|..+|++++-+++|.-+++..|+++..-...-.+-+++ .+-..|....--++...|..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999888765433322222221 12334555555566666654
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.3 Score=41.75 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 002443 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--ACAHTHCGILYKDEGRLV 133 (921)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 133 (921)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3556777788888888888888888888888888888888888877654 344444445555455433
|
|
| >KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.25 Score=57.74 Aligned_cols=147 Identities=17% Similarity=0.135 Sum_probs=86.6
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcE-EEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002443 659 FITFGSFNNLA---KITPKVLQVWARILCAVPNSR-LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 659 ~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
.++|-||.... .+.++.....+..+...|+-. +|..... .... +.+.+... +...|++.++.| +.+.+
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~-~~~~----~~~~~~~~--~~~nV~~~~W~P-Q~~ll 349 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD-DSIY----FPEGLPNR--GRGNVVLSKWAP-QNDLL 349 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC-cchh----hhhcCCCC--CcCceEEecCCC-cHHHh
Confidence 45688888877 899999999999999987776 4544332 1111 11111111 234688888987 55655
Q ss_pred HhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCcc-cccC--CHHHHHHHHHHHhcCH
Q 002443 735 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKH-LIAK--NEDEYVQLALQLASDV 809 (921)
Q Consensus 735 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~-~i~~--~~~~y~~~a~~l~~d~ 809 (921)
.....+..|+ -.+|=++|+|+++.|||+|++| |+.+.. +-++..-|... ++.. +..+..+....+..++
T Consensus 350 l~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~ 423 (496)
T KOG1192|consen 350 LDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEILENE 423 (496)
T ss_pred cCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcCh
Confidence 3334355554 2466678999999999999776 665543 22333333322 2222 2222445555566666
Q ss_pred HHHHHHHHHH
Q 002443 810 TALANLRMSL 819 (921)
Q Consensus 810 ~~~~~~r~~~ 819 (921)
+.....++-.
T Consensus 424 ~y~~~~~~l~ 433 (496)
T KOG1192|consen 424 EYKEAAKRLS 433 (496)
T ss_pred HHHHHHHHHH
Confidence 6555554433
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.05 Score=53.50 Aligned_cols=67 Identities=28% Similarity=0.510 Sum_probs=59.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002443 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 376 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.......
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~k 69 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALK 69 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhh
Confidence 3456778999999999999999999999999999999999999999999999999999987654443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.14 Score=38.56 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 002443 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119 (921)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (921)
.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 445555555555555555555555555555555444
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.36 Score=50.53 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002443 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 406 (921)
+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3444455555556666666666666666665555555566666666666666666665555555554433
|
|
| >KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.32 Score=50.96 Aligned_cols=124 Identities=17% Similarity=0.270 Sum_probs=92.8
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEE-ccCcCCcHHHHHhcccccEE--ecCCCCCC--cccHHHHhh
Q 002443 686 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILLNHDHMQAYSLMDIS--LDTFPYAG--TTTTCESLY 760 (921)
Q Consensus 686 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~-~~~~~~~~~~~~~~~~~Dv~--Ld~~~~~g--~~t~~eal~ 760 (921)
.|+-..+|-|+| +.++...+..++.... +|.| +|+.. -+||-..++.||+. |.|+-.|= ..-.+|..-
T Consensus 291 lP~llciITGKG----PlkE~Y~~~I~~~~~~--~v~~~tpWL~-aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFG 363 (444)
T KOG2941|consen 291 LPSLLCIITGKG----PLKEKYSQEIHEKNLQ--HVQVCTPWLE-AEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFG 363 (444)
T ss_pred CCcEEEEEcCCC----chhHHHHHHHHHhccc--ceeeeecccc-cccchhHhhccccceEeeecCcccCcchhHHHhhc
Confidence 476666666766 7888888888888775 4443 45554 58998899999965 54443322 235899999
Q ss_pred cCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHH
Q 002443 761 MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS----DVTALANLRMSLRDL 822 (921)
Q Consensus 761 ~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~a~~l~~----d~~~~~~~r~~~~~~ 822 (921)
+|+||+++.=.+.-. |-.-|-.++|..|-++..+...-|.+ |...+.+++..+++.
T Consensus 364 cglPvcA~~fkcl~E------LVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 364 CGLPVCAVNFKCLDE------LVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred CCCceeeecchhHHH------HHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 999999865443332 34457788999999999999999998 899999999988876
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.56 Score=44.28 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002443 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
.+..+..+-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 44555566667778888888888887888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhhcCC
Q 002443 416 GSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 416 g~~~~A~~~~~~al~l~P 433 (921)
|+.. =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 8764 2333444555544
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.32 Score=42.63 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002443 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 386 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
.+++.+.++..+.|..+..++.+|.-+....-|+++..-.+++|.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3677778888888887777777777766666777777777777654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.45 Score=49.76 Aligned_cols=69 Identities=19% Similarity=0.110 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHH
Q 002443 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (921)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (921)
..++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 445556666677777777777777777777776666677777777777777777777777766666543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.22 Score=37.54 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhh
Q 002443 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 438 (921)
++.+|..+.++|+|++|..+.+.+|+++|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3344444444444444444444444444444433
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.2 Score=39.19 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=54.8
Q ss_pred HcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCH----
Q 002443 346 DRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYA---- 402 (921)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~-------~~p~~~---- 402 (921)
..|-|++|...++++++.... ++-++-.|+.++..+|+|++++...++++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 446666676666666665321 123556677777777777777666666654 344432
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002443 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
.+.++.+..+..+|+.++|+..|+++-++
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 35567888888999999999999887654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.43 Score=48.24 Aligned_cols=92 Identities=25% Similarity=0.215 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHH-------HHHHHHhhCCC------CHHHHH
Q 002443 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ-------KYYEALKIDPH------YAPAYY 195 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~-------~~~~al~~~p~------~~~~~~ 195 (921)
...+++|++.|.-++-...-...-...+|.++..++.+|...++.++... .|.++++.... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 33555666655555432111111111345666666777766666443333 33333332111 134455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 002443 196 NLGVVYSELMQYDTALGCYEKAALE 220 (921)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~ 220 (921)
.+|.++.+.|++++|..+|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 5555555555555555555555543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.42 Score=40.80 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002443 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 387 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3566778888888888888888888888888888888888888888776
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.073 Score=34.62 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002443 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4666777777777777777777777776664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length | Back alignment and domain information |
|---|
Probab=94.15 E-value=3.1 Score=45.24 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=40.9
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEec-CCCcccccchhHHHhhcCCcccccCCHHHHHHH
Q 002443 732 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTM-AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQL 801 (921)
Q Consensus 732 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~-~g~~~~~r~~~~~l~~~gl~~~i~~~~~~y~~~ 801 (921)
+.+.++.-||+++ -+|||.+.||-.+|||+|.+ +|..+. +. -.|...|+ =+-..|.++-++.
T Consensus 241 d~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--vd-~~L~~~Gl-l~~~~~~~ei~~~ 303 (335)
T PF04007_consen 241 DGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--VD-KYLIEKGL-LYHSTDPDEIVEY 303 (335)
T ss_pred CHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--HH-HHHHHCCC-eEecCCHHHHHHH
Confidence 3345555688988 89999999999999999973 344111 11 23555576 3335677776663
|
They are found in archaea and some bacteria and have no known function. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.33 Score=59.73 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=124.1
Q ss_pred HhhhhhhhhcCCHHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCH
Q 002443 270 TDLGTKVKLEGDINQGVA------YYK-KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 334 (921)
Q Consensus 270 ~~lg~~~~~~~~~~~A~~------~~~-~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 334 (921)
...|.....++.+.++.+ ++. ..-.+.|.....+..++.++...+++++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 334444445666676666 444 223446778889999999999999999999988777654 34557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Q 002443 335 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------- 399 (921)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------- 399 (921)
..+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+++++.|+..+.
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 78889999999999999999999998876 345556778899999999999999999999998642
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002443 400 -TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 400 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
.....+..+++++..++++..|....+....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 22456777888888888888888777766554
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.3 Score=38.99 Aligned_cols=95 Identities=19% Similarity=0.119 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Q 002443 51 ALSYANILRSRNKFVDALALYEIVLEKDSG------------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (921)
Q Consensus 51 ~l~~a~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (921)
.+..|...+..|-|++|...++++.+.... ++-++..++.++..+|+|++++...++++..
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 455677778889999999999999885322 3457888999999999999988888777753
Q ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002443 112 DPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSA 145 (921)
Q Consensus 112 ~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (921)
+.+.. .+-+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44443 34567788899999999999999988653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG4370 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.045 Score=55.87 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=85.7
Q ss_pred CCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCC--cccccchhHHHhhcCCccccc
Q 002443 715 GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHNVGVSLLTKVGLKHLIA 792 (921)
Q Consensus 715 gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~--~~~~r~~~~~l~~~gl~~~i~ 792 (921)
|-+.-++.|. .+.|-..++.+|++| =-.||.+=++.-.|+|||..||. .+.--.+..-.+-+|..=...
T Consensus 292 ~kdnc~l~ls-----qqsfadiLH~adaal----gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv 362 (412)
T COG4370 292 GKDNCSLWLS-----QQSFADILHAADAAL----GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLV 362 (412)
T ss_pred ccCceEEEEe-----HHHHHHHHHHHHHHH----HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeec
Confidence 4344455553 466777778899977 45789999999999999999974 333333444456778877667
Q ss_pred CCHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002443 793 KNEDEYVQLALQ-LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 793 ~~~~~y~~~a~~-l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 846 (921)
..++.-.+.+++ +..|++++.++|+.-++|+- .++-++++.+.+.+||
T Consensus 363 ~~~aq~a~~~~q~ll~dp~r~~air~nGqrRiG------qaGaa~rIAe~l~e~a 411 (412)
T COG4370 363 RPEAQAAAQAVQELLGDPQRLTAIRHNGQRRIG------QAGAARRIAEELGEMA 411 (412)
T ss_pred CCchhhHHHHHHHHhcChHHHHHHHhcchhhcc------CcchHHHHHHHHHHhc
Confidence 777777777777 99999999999988888863 2356777777777776
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=4.5 Score=38.51 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=95.7
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHcCC
Q 002443 310 YGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F--SQSLNNLGVVYTVQGK 383 (921)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~ 383 (921)
+...++.++|+..|...-+..-.. .-+....+.+....|+...|+..|..+-.-.+. - -.+...-+.++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345678888988888877664443 445677888999999999999999988765432 1 1244555677788898
Q ss_pred HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHH
Q 002443 384 MDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (921)
Q Consensus 384 ~~~A~~~l~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~ 444 (921)
|++-....+..- ..+|-...+...||..-.+.|++.+|...|.+... +...+....++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 888766655432 22454566778899999999999999999999887 4444444445433
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.5 Score=47.79 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHH
Q 002443 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
...+++|++.|.-|+-...-.......+|.++..++.++...++.+...
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~ 138 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEK 138 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 3456677776666653311100111134555555555555555543333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=6.3 Score=37.56 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002443 226 EAYCNMGVIYKNRGDLESAIACYERCL 252 (921)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al 252 (921)
.+.-.||..-++.|++.+|.+.|....
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 334444444444444444444444443
|
|
| >cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.83 Score=48.69 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCC
Q 002443 671 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYA 750 (921)
Q Consensus 671 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~ 750 (921)
..++.+....+.+..- +.++++.+.+ ..++...+..+..+ ...-+.+.+.. +-.+..+.+..+|+++-+-
T Consensus 137 w~~~~~~~l~~~l~~~-~~~ivl~g~~----~e~~~~~~i~~~~~-~~~~~~~~~~~-~l~e~~~li~~~~l~I~~D--- 206 (279)
T cd03789 137 WPAERFAALADRLLAR-GARVVLTGGP----AERELAEEIAAALG-GPRVVNLAGKT-SLRELAALLARADLVVTND--- 206 (279)
T ss_pred CCHHHHHHHHHHHHHC-CCEEEEEech----hhHHHHHHHHHhcC-CCccccCcCCC-CHHHHHHHHHhCCEEEeeC---
Confidence 3344555555445444 6778877654 22222223223332 22334456654 3578999999999998432
Q ss_pred CcccHHHHhhcCCcEEecCCCcccccch
Q 002443 751 GTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 751 g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
+-+.-=|.++|+|+|++-|.+...+.+
T Consensus 207 -sg~~HlA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 207 -SGPMHLAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred -CHHHHHHHHcCCCEEEEECCCCccccC
Confidence 222333458899999999988777753
|
Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long) | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.5 Score=45.09 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=77.4
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCCEEEc-cCcCCcHHHHHh
Q 002443 660 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLL-PLILLNHDHMQA 736 (921)
Q Consensus 660 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~-~~~~~~~~~~~~ 736 (921)
|..|+-+...- .-++++..|.+...+-+=+++--+++ .+.-++.+.+...++.-+ +++..+ ...+ -+||++.
T Consensus 188 ILvGNSgd~sN---nHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~-~~~~iL~e~mp-f~eYl~l 262 (360)
T PF07429_consen 188 ILVGNSGDPSN---NHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA-ENFQILTEFMP-FDEYLAL 262 (360)
T ss_pred EEEcCCCCCCc---cHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc-cceeEhhhhCC-HHHHHHH
Confidence 44444333333 44555556665554433344433343 356777788777776443 566544 4554 6999999
Q ss_pred cccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc
Q 002443 737 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA 792 (921)
Q Consensus 737 ~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i~ 792 (921)
+..||++.=.+.= -|--|.|=.|++|+||+--.-.+ -...|...|++=+-.
T Consensus 263 L~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np-----~~~~l~~~~ipVlf~ 314 (360)
T PF07429_consen 263 LSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNP-----FWQDLKEQGIPVLFY 314 (360)
T ss_pred HHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCCh-----HHHHHHhCCCeEEec
Confidence 9999999977754 44458899999999999733322 344577778776644
|
This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.58 E-value=10 Score=39.10 Aligned_cols=203 Identities=10% Similarity=-0.019 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHH---HHhhC--CCCHHH
Q 002443 120 THCGILYKDEGRLVEAAESYHKALSADPSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKID--PHYAPA 193 (921)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~---al~~~--p~~~~~ 193 (921)
..+++-..+.+++++|+..|.+.+...-.- .......-.....++.+|...|++..--+.... +.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 345555666777777777777777652221 111222233456677777777776544333322 22211 111222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------ChHH
Q 002443 194 YYNLGVVY-SELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSP------NFEI 260 (921)
Q Consensus 194 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~ 260 (921)
...+-.-+ .....++.-+..+...++..... ...-..+..++++.|+|.+|+......+.... ....
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22221111 12334555555555555432211 23345677889999999999998877664321 1122
Q ss_pred HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh-----CCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002443 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-----NWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (921)
Q Consensus 261 ~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (921)
.+..-..+|.. ..+..++...+..+-.. .|... +.-..-|.......+|..|..+|-++++-
T Consensus 167 vhllESKvyh~-------irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 167 VHLLESKVYHE-------IRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHHH-------HHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 22222333333 33444444444333211 12111 11222344455556677777777766653
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.65 Score=42.05 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHh
Q 002443 368 SQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (921)
Q Consensus 368 ~~~~~~la~~~~~~g---~~~~A~~~l~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 440 (921)
.+..+++++++.... +..+.+.+++..++ -+|+. -+..+.|+..+.+.|+|++++.+.+..++..|+|..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 456777777777654 45567788888876 44433 467788888888888888888888888888888877654
|
|
| >PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.1 Score=50.88 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=56.2
Q ss_pred CCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcc---cccchhHHHhhcCCccccc--
Q 002443 719 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIA-- 792 (921)
Q Consensus 719 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~i~-- 792 (921)
.+|.+.+.++.-.++++ .+||++ . +|++|+.|++.+|+|.|..|-... ....-+..+...|....+.
T Consensus 55 ~~v~~~~~~~~m~~~m~---~aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMA---AADLVI----SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSSSHHHHHH---HHSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechhhHHHHHH---HcCEEE----eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcc
Confidence 57888888664445554 499998 5 667899999999999887765541 1222344566666655442
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHH
Q 002443 793 -KNEDEYVQLALQLASDVTALANLR 816 (921)
Q Consensus 793 -~~~~~y~~~a~~l~~d~~~~~~~r 816 (921)
.+.+...+....+..++..+..+.
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~ 152 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMA 152 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHC
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHH
Confidence 335667777788888886644443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.1 Score=43.96 Aligned_cols=103 Identities=11% Similarity=-0.119 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 002443 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (921)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 159 (921)
.++..+|..|.+.|++++|++.|.++...... ..+.++.+..+....+++.....++.++-..-... ..+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHHHHH
Confidence 57788999999999999999999998775433 24567778888888899999888888886654332 113333444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002443 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (921)
....|..+...++|.+|.+.|-.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 444555666667777777777665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.25 Score=54.40 Aligned_cols=88 Identities=17% Similarity=0.100 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002443 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (921)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (921)
+....|+..|.+++...|.....+.+.+.++.+. |+.-.|+.....+++++|....+++.|+.++..++++.+|+++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 4556677777777777777777777777776663 4566677777777777777777888888888888888888777
Q ss_pred HHHHhhcCCCC
Q 002443 425 YEQCLKIDPDS 435 (921)
Q Consensus 425 ~~~al~l~P~~ 435 (921)
...+....|.+
T Consensus 468 ~~alq~~~Ptd 478 (758)
T KOG1310|consen 468 HWALQMSFPTD 478 (758)
T ss_pred HHHHhhcCchh
Confidence 77666666644
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.7 Score=39.51 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002443 334 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408 (921)
Q Consensus 334 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 408 (921)
.+..+++++++.... +..+.+.+++..++ -.|. .-+..+.|+..+++.++|++++.+.+..++..|++.++....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456667777776654 45567777777775 3333 245677778888888888888888888888888876665443
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.10 E-value=1 Score=55.55 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Q 002443 46 FEGKDALSYANILRSRNKFVDALA------LYEI-VLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (921)
.+.+...+.+......|.+.+|.+ ++.. .-...|.....+..++..+...|++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 467788888999999999998887 5553 23357888899999999999999999999988887643
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002443 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (921)
Q Consensus 112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (921)
.|+....+..++...+..++...|...+.++..+ .|..+.. +.+..+++.++...++++.|+.+++.+++
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888888777654 2222221 22334444444445556666666665555
Q ss_pred h
Q 002443 186 I 186 (921)
Q Consensus 186 ~ 186 (921)
.
T Consensus 1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred H
Confidence 3
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.62 Score=51.50 Aligned_cols=106 Identities=14% Similarity=0.039 Sum_probs=91.3
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCHHHHH
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHT 120 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~ 120 (921)
.+...+..+..|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 3445666667777777777889999999999999999999999999988865 4667788888899999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002443 121 HCGILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
.|+.++...+++.+|+.+...+....|.+
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999999998888888854
|
|
| >PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.25 Score=52.35 Aligned_cols=87 Identities=21% Similarity=0.158 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCC
Q 002443 671 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYA 750 (921)
Q Consensus 671 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~ 750 (921)
....+.++...+++..|+..|+++-.|........ ..+...--...++.+..... ..+.+ ..||.++ --
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~Ll---~~s~~Vv----ti 206 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKY---SYLEELPNLPNVVIIDDDVN-LYELL---EQSDAVV----TI 206 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCCh---hHhhhhhcCCCeEEECCCCC-HHHHH---HhCCEEE----EE
Confidence 44567788888899999999999977631111111 22222211224454444433 34444 4488887 56
Q ss_pred CcccHHHHhhcCCcEEec
Q 002443 751 GTTTTCESLYMGVPCVTM 768 (921)
Q Consensus 751 g~~t~~eal~~GvPvvt~ 768 (921)
.+|+.+|||.+|.||||+
T Consensus 207 nStvGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 207 NSTVGLEALLHGKPVIVF 224 (269)
T ss_pred CCHHHHHHHHcCCceEEe
Confidence 788999999999999994
|
Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport |
| >PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.26 Score=51.42 Aligned_cols=205 Identities=14% Similarity=0.148 Sum_probs=90.0
Q ss_pred HHHHHHHhCCccEEEecCCCCCCCchhhhhc-CCCceEEeeccCCCCCCCCCccEEEecCCCCCCCcccC--cccceEEc
Q 002443 557 KVAAMVREDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQK--HVEELIRL 633 (921)
Q Consensus 557 ~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~-r~ApvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~--~~e~~~~l 633 (921)
.+++.||.-+.|++||+.+.. |..+++. -.||.-+.+-+... .+.-..+..+.... .+...+.+ ..+.++-+
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~ll~~~~~~ 77 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDRPP-NKHMVDRYLSLLSELLGI 77 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-TTS-SSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhcccccccccc-cchHHHHHHHHHHHhcCC
Confidence 578999999999999997753 3433333 56787777754443 11122222222211 11111111 11122222
Q ss_pred CCCccccCCCCCCC-----CCCCCC-CCCCCCeEEEecCCC-CcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHH
Q 002443 634 PECFLCYTPSPEAG-----PVCPTP-ALTNGFITFGSFNNL-AKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 705 (921)
Q Consensus 634 p~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~-~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~ 705 (921)
|... ..|.-..+ ...... ......|.|.-+.+. .|. ..+.+..+.+-+.... ..+++.|++. ....
T Consensus 78 ~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~~---~~~~ 151 (247)
T PF01075_consen 78 PYPS--TKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGPE---EQEK 151 (247)
T ss_dssp -SSS--SSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SSH---HHHH
T ss_pred CCCC--CCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccch---HHHH
Confidence 2110 11100000 000111 123344545444432 343 3444444444443333 4566666551 1112
Q ss_pred HHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccch
Q 002443 706 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 706 ~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
.....+ ..+.....+.+.+... -.+..+....||+++ -+-+-.+==|-++|+|+|++-|.+...|.+
T Consensus 152 ~~~~~~-~~~~~~~~~~~~~~~~-l~e~~ali~~a~~~I----~~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 152 EIADQI-AAGLQNPVINLAGKTS-LRELAALISRADLVI----GNDTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHHH-HTTHTTTTEEETTTS--HHHHHHHHHTSSEEE----EESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHHHH-HHhcccceEeecCCCC-HHHHHHHHhcCCEEE----ecCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 222222 2233323577777754 689999999999997 222223444677999999999998776665
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.3 Score=41.13 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
...++.........++.+++..++..+--+.|+.++.-..-|..+...|++.+|+..|+...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 44566777777779999999999999888899999999999999999999999999999988888888888888888888
Q ss_pred HcCCHH
Q 002443 128 DEGRLV 133 (921)
Q Consensus 128 ~~g~~~ 133 (921)
.+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=92.70 E-value=15 Score=38.61 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHh
Q 002443 221 RPMYAEAYCNMGVI-YKNRGDLESAIACYERCLAV 254 (921)
Q Consensus 221 ~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~ 254 (921)
.|...+.+...+.+ |...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44445555554443 67788999888877766655
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=6.5 Score=44.87 Aligned_cols=216 Identities=14% Similarity=0.116 Sum_probs=113.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH
Q 002443 194 YYNLGVVYSELMQYDTALGCYEKAAL--------------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (921)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (921)
|..||.-....=+++-|.+.|.++-. .....+. -..++.++...|++.+|.+.|.+.=..+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enR--- 663 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENR--- 663 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhh---
Confidence 55566666666667777777766522 1111122 24577888888899999888876421110
Q ss_pred HHHHHH-HHHHHhhhhhhhhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHH----------HHH
Q 002443 260 IAKNNM-AIALTDLGTKVKLEGDINQGVAYYKKALYY--NWHYADAMYNLGVAYGEMLKFDMAIVFY----------ELA 326 (921)
Q Consensus 260 ~~~~~l-a~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~----------~~a 326 (921)
+.... -.-.+..++-+...|.-++-..+.++-.+. +-+.+. ..|.++...|+.++|+... +-+
T Consensus 664 -AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 664 -ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred -HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 00000 001122233333344444444443332221 112222 2355666777777776543 222
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002443 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (921)
Q Consensus 327 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 406 (921)
-+++....+.+..++..+.+...+.-|.+.|++.-.. ..+..++...+++.+|....++--+.- ..+|+
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~ 808 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYM 808 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcccc---ccccc
Confidence 2334444555666666666666666666666654221 223445566777777776655433332 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 002443 407 NLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~a 428 (921)
-.|+-+.+..+++||.+.|.+|
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHh
Confidence 6666666667777776666655
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.66 E-value=11 Score=43.29 Aligned_cols=212 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002443 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196 (921)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (921)
..+.+-|.-.++..+|..+++.|...+...|.+...... +.....+..+|....+.+.|.++++++-+.+|.++-....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHH
Q 002443 197 LGVVYSELMQYDTALGCYEKAALERPM--------------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (921)
.-.+....+.-++|+.+..+......+ -..-+...+......++--.+....+..-..........
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l~~~n~Q~I~sE~~~~~l~~~~~~q~~v~ 513 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLLMIFNSQTISSESSSQTLSILYTLQMIVK 513 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHHHHHhcchhhhcchHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHhhh-------hhhhhcCCHHHHHHHH---------------HHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002443 263 NNMAIALTDLG-------TKVKLEGDINQGVAYY---------------KKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (921)
Q Consensus 263 ~~la~~~~~lg-------~~~~~~~~~~~A~~~~---------------~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 320 (921)
...-..+.-+- ....+...+.+-.+++ +.......-......+||.-+.+-..++.-.
T Consensus 514 ~~~~e~L~F~L~~~~~~~~~~~ka~e~~~~~~Cln~~~~~~FGe~~~~~E~~~nE~~WFa~T~WNLav~C~Kd~~~e~~~ 593 (872)
T KOG4814|consen 514 VSEEEPLEFFLNYLPTVQKLLQKAVEFLKTVKCLNQLPPDVFGEAIYQQEVAVNEIEWFASTSWNLAVKCLKDQSCESIS 593 (872)
T ss_pred HHHHhHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcCCchhhhHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHH
Q ss_pred HHHHHHHhh
Q 002443 321 VFYELAFHF 329 (921)
Q Consensus 321 ~~~~~al~~ 329 (921)
+.++-+.+.
T Consensus 594 EF~~L~~~f 602 (872)
T KOG4814|consen 594 EFPQLCIQF 602 (872)
T ss_pred HHHHHHHHH
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.21 Score=32.23 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 002443 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (921)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (921)
+..+|.++...+++++|+..|+++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.6 Score=42.79 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 002443 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (921)
-.++..+|..|.+.|++++|++.|.++.+.... ..+.++.+..+....+++.....+..++-...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346677888888888888888888887765433 24567777777888888888888877776553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.43 E-value=22 Score=39.87 Aligned_cols=215 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHH
Q 002443 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (921)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (921)
.+...|-+...+..+-.++...-++.-....+.+++....+ ..+++.++.+|... ..++-...+++..+.+-++...-
T Consensus 58 ~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ 135 (711)
T COG1747 58 SLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIG 135 (711)
T ss_pred HhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHH
Q ss_pred HHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002443 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (921)
Q Consensus 263 ~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 342 (921)
..++..|... +.+++..+|.+++ .-.....+...-.+.+++..+.-+++.+..+.+-.
T Consensus 136 ReLa~~yEki--------k~sk~a~~f~Ka~--------------yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~ 193 (711)
T COG1747 136 RELADKYEKI--------KKSKAAEFFGKAL--------------YRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQK 193 (711)
T ss_pred HHHHHHHHHh--------chhhHHHHHHHHH--------------HHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------
Q 002443 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD-------- 414 (921)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-------- 414 (921)
-.....-...+.-.++..... |....++++|++.+...++.+..+..+.-++...+..
T Consensus 194 kiqt~lg~~~~~Vl~qdv~~~--------------Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~ 259 (711)
T COG1747 194 KIQTKLGEGRGSVLMQDVYKK--------------YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQL 259 (711)
T ss_pred HHHHhhccchHHHHHHHHHHH--------------hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhH
Q ss_pred ------------cCCHHHHHHHHHHHhhcCCCC
Q 002443 415 ------------AGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 415 ------------~g~~~~A~~~~~~al~l~P~~ 435 (921)
-.++.+++.-|++.+..+..+
T Consensus 260 e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 260 EEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHhcchhhccccHHHHHHHHHHHheeccCc
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=17 Score=38.28 Aligned_cols=181 Identities=13% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--------
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-------- 115 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------- 115 (921)
.....+.-...-+...+..+..+-++....+++.+|+.+.++..++.- ...-..+|.+.|+++++.....
T Consensus 180 d~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~q 257 (556)
T KOG3807|consen 180 DTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQ 257 (556)
T ss_pred cccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHh
Q ss_pred -----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHH
Q 002443 116 -----------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (921)
Q Consensus 116 -----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~ 178 (921)
..+-..++.|..++|+..+|++.++...+..| ...+-.+..++-..+....-|.....
T Consensus 258 h~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p-----l~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 258 HQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP-----LLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred hhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002443 179 KYYEALKI-DPHYAPAYYNLGVVYSE----------------LMQYDTALGCYEKAALERPMYAEAYCNM 231 (921)
Q Consensus 179 ~~~~al~~-~p~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~al~~~p~~~~~~~~l 231 (921)
.+-+.-++ -|..+...+.-+.+-.+ ..--..|++...++++.+|.-+..+..+
T Consensus 333 vLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 333 VLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHH
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=15 Score=41.70 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=109.6
Q ss_pred HhCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCh------
Q 002443 94 MQNMGRLAFDSFSEAVKL------------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYK------ 150 (921)
Q Consensus 94 ~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~------ 150 (921)
....|++|...|.-+... .|-+...+..++.+...+|+.+-|....++++-. .|...
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345678888888877765 4556788999999999999999888887777531 12110
Q ss_pred ------HhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----
Q 002443 151 ------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY-SELMQYDTALGCYEKA----- 217 (921)
Q Consensus 151 ------~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~~A~~~~~~a----- 217 (921)
......-.+++..-..+.+.|-+..|.++.+-.++++|. ++.+...+..+| .+..+|+=-++.++..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 001112223444455667889999999999999999998 776655555554 4556666666666655
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC
Q 002443 218 ALERPMYAEAYCNMGVIYKNRGD---LESAIACYERCLAVSPN 257 (921)
Q Consensus 218 l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 257 (921)
+..-|+.. .-..++..|..... -+.|...+.+|+...|.
T Consensus 410 l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 410 LSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 23344432 23456666666655 57788899999988885
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.72 E-value=2.2 Score=39.64 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=54.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002443 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (921)
Q Consensus 341 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (921)
...-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+...-.++.|+..+|+.+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3333446677777777776666777777777777777777777777777777777766666666667777777777653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=9.3 Score=43.30 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=104.3
Q ss_pred hCCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------
Q 002443 60 SRNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------------- 111 (921)
Q Consensus 60 ~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 111 (921)
....|++|...|.-+... .|.+.+.++.++.+...+|+.+.|....++++-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677888877776653 5667889999999999999999888887777632
Q ss_pred -----CCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002443 112 -----DPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (921)
Q Consensus 112 -----~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (921)
.|.|-.. ++..-..+.+.|-+..|.++++-+++++|. ++-....+...|...+.-|.-.-++.++.+..++
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2223222 233334556789999999999999999998 6665444444444444333333233333222222
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 002443 183 ALKIDPHYAPAYYNLGVVYSELMQ---YDTALGCYEKAALERPM 223 (921)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 223 (921)
+..-|+.+ .-..+|..|..... -+.|...+.+|+...|.
T Consensus 410 -l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 410 -LSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred -HhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 22334433 22345666666655 56788899999988875
|
|
| >PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=3.4 Score=45.60 Aligned_cols=111 Identities=13% Similarity=-0.026 Sum_probs=62.7
Q ss_pred CCeEEEecCC--CCcCC-HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCC-EEEccCcCCcHH
Q 002443 658 GFITFGSFNN--LAKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLR-VDLLPLILLNHD 732 (921)
Q Consensus 658 ~~~~~~~~~~--~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~-~~r-v~~~~~~~~~~~ 732 (921)
..|+|....+ ..|.= ++-+...++-+.. .+.++++.|++ ..++...+..+..+-. ..+ +.+.|..+ -.+
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~----~e~~~~~~i~~~~~~~~~~~~~~l~g~~s-L~e 254 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSA----KDHEAGNEILAALNTEQQAWCRNLAGETQ-LEQ 254 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCH----HhHHHHHHHHHhcccccccceeeccCCCC-HHH
Confidence 4566666553 34543 4444444443332 46677777654 2222222222222211 123 45566554 578
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccch
Q 002443 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 733 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
..+.+..||+++ -|-+-.+==|-++|+|||++-|.+...+.+
T Consensus 255 l~ali~~a~l~I----~nDTGp~HlAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 255 AVILIAACKAIV----TNDSGLMHVAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHHHHHhCCEEE----ecCChHHHHHHHhCCCEEEEECCCCccccC
Confidence 999999999987 222222444788999999999988766554
|
|
| >TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative | Back alignment and domain information |
|---|
Probab=91.45 E-value=3.3 Score=45.65 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=61.2
Q ss_pred CCCeEEEecCC-CCcCCHHHHHHHHHHHhHc--CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCC-EEEccCcCCcHH
Q 002443 657 NGFITFGSFNN-LAKITPKVLQVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR-VDLLPLILLNHD 732 (921)
Q Consensus 657 ~~~~~~~~~~~-~~K~~~~~~~~~~~il~~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~r-v~~~~~~~~~~~ 732 (921)
...|+++...+ ..|.=| .+-|+++.+.. .+..++|.|++.. ..++ +.+.+.+ +....+ +.+.|... -.+
T Consensus 181 ~~~i~i~p~a~~~~K~Wp--~e~~~~l~~~l~~~~~~ivl~g~p~~--~e~~-~~~~i~~-~~~~~~~~~l~g~~s-L~e 253 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWD--NDRFSALIDALHARGYEVVLTSGPDK--DELA-MVNEIAQ-GCQTPRVTSLAGKLT-LPQ 253 (344)
T ss_pred CCEEEEeCCCCccccCCC--HHHHHHHHHHHHhCCCeEEEecCCCH--HHHH-HHHHHHh-hCCCCcccccCCCCC-HHH
Confidence 34565655543 233332 23333333322 3567777765421 1111 1222222 222234 34667654 589
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccch
Q 002443 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 733 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
..+.+..||+++ -+-+-.+==|-++|+|+|++-|.+...+.+
T Consensus 254 l~ali~~a~l~V----s~DSGp~HlAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 254 LAALIDHARLFI----GVDSVPMHMAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred HHHHHHhCCEEE----ecCCHHHHHHHHcCCCEEEEECCCCccccc
Confidence 999999999998 222223344778999999999987666654
|
This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.18 E-value=14 Score=40.42 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002443 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGE------------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (921)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (921)
.-+++++.-.+.+..+|+...+|+..-.++.. ..-.++-+.+...+++.+|+...+|+....++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 34566666677777777766555443322221 113444555666666666666666666666666554
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002443 349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG----KMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (921)
Q Consensus 349 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 413 (921)
++..-++..+++++.+|.+..+|...=.+..... ...+=+++..+++..++.+..+|.....++.
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 3466666666666666666555554444333322 2344556666666666666666666555554
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.34 Score=47.84 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=48.1
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Q 002443 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (921)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (921)
.....++.+.|.+.|.+++.+-|+....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456677788888888888888888888888888888888888888888888888887643
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.95 E-value=41 Score=40.11 Aligned_cols=383 Identities=13% Similarity=0.009 Sum_probs=206.1
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002443 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (921)
Q Consensus 45 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (921)
+++....+.+...+...|++++-...-.++.+..|..+..|.....-.. ..++-.++...|++++.-. +++..|..
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e 188 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEE 188 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHH
Confidence 3445566677788888999988888888888888888887766554433 3367788888999988643 34444444
Q ss_pred HHHH-------HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---H
Q 002443 122 CGIL-------YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---A 191 (921)
Q Consensus 122 la~~-------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~ 191 (921)
.+.. +...++++.-...|.+++..-.....--..+...+...-..+...-..++-+.++...+...-+. .
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~ 268 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRG 268 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhH
Confidence 4433 34456788888899998875433222222234445555556655555577777777776654111 1
Q ss_pred HHHHHHH---HHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHH
Q 002443 192 PAYYNLG---VVYSELMQYDTALGCYEKA-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (921)
Q Consensus 192 ~~~~~la---~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (921)
..|.... .......+++.|...+.+. ++..+.....|..+-..-...|..-.-...+++++...+.+...
T Consensus 269 ~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~ 348 (881)
T KOG0128|consen 269 WDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRAL 348 (881)
T ss_pred HHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHH
Confidence 1111111 1112334455555544433 33334334455556666666777776667777777666555544
Q ss_pred HHHHHHHHHh---hhh----hhh-hcCCHHHHHHHHHHHH---HhCCCC-----------HH---HHHHHHHHHH-HcC-
Q 002443 262 KNNMAIALTD---LGT----KVK-LEGDINQGVAYYKKAL---YYNWHY-----------AD---AMYNLGVAYG-EML- 314 (921)
Q Consensus 262 ~~~la~~~~~---lg~----~~~-~~~~~~~A~~~~~~al---~~~~~~-----------~~---~~~~la~~~~-~~g- 314 (921)
+...+..+.. +.. .+. ..+...-...++++++ +.+... .. .+++....|. ..+
T Consensus 349 wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~ 428 (881)
T KOG0128|consen 349 WIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTN 428 (881)
T ss_pred HhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4443322110 000 000 0000001111111111 111000 00 0111111111 111
Q ss_pred ------------ChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHH
Q 002443 315 ------------KFDMAIVFYELAFHF-NPHCAEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYT 379 (921)
Q Consensus 315 ------------~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~ 379 (921)
.|..|..++...... -......+...|.++. .+++.+.+....+..+...-.... .|.....+-.
T Consensus 429 ~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~ 508 (881)
T KOG0128|consen 429 IIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLER 508 (881)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHH
Confidence 233444444443333 1112344555555554 356888888888887776555544 7888888888
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002443 380 VQGKMDAAAEMIEKAIAA--NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 380 ~~g~~~~A~~~l~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
..|+...+..++++++.. +|++ .+++..+-......|.++....+-++.
T Consensus 509 ~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 509 EYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred HhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 889999999988888765 3332 344555555556667776665554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 921 | ||||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-32 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-14 | ||
| 2vsn_A | 568 | Structure And Topological Arrangement Of An O-Glcna | 2e-28 | ||
| 2vsy_A | 568 | Xanthomonas Campestris Putative Ogt (Xcc0866), Apos | 2e-28 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 4e-28 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 4e-23 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 7e-19 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-18 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-11 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-16 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-13 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 1e-14 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 7e-11 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 8e-13 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 6e-10 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-11 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 4e-10 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 1e-09 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 5e-04 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-08 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 4e-08 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 3e-06 | ||
| 4eqf_A | 365 | Trip8b-1a#206-567 Interacting With The Carboxy-Term | 7e-08 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 1e-07 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 2e-06 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 1e-07 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 2e-06 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 1e-07 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 3e-06 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 2e-07 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 4e-06 | ||
| 3cv0_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (Pts1) | 2e-06 | ||
| 3cvq_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (pts1) | 2e-06 | ||
| 3q3e_A | 631 | Crystal Structure Of The Actinobacillus Pleuropneum | 2e-05 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 5e-05 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 6e-04 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 7e-05 | ||
| 2xpi_A | 597 | Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 | 2e-04 |
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568 | Back alignment and structure |
|
| >pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327 | Back alignment and structure |
|
| >pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327 | Back alignment and structure |
|
| >pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae Hmw1c Glycosyltransferase Length = 631 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 Length = 597 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 558 bits (1439), Expect = 0.0
Identities = 125/571 (21%), Positives = 207/571 (36%), Gaps = 43/571 (7%)
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
++ A P A L + Q L++ P +++ LG
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
V Q + AA ++++A A P + LG DAG A AY + ++ P+
Sbjct: 65 RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124
Query: 436 RNAGQNRLLAMNYINEGH-------------------------------DDKLFEAHRDW 464
L + + + R
Sbjct: 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTR 184
Query: 465 GKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS 524
+ S + PL +G+VS + H A + + ++
Sbjct: 185 AQAIAA--SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHL 242
Query: 525 -AVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLG 583
A D T+R R + + D+ + A +R ID+L +L G +
Sbjct: 243 FATSGDDGSTLRTR---LAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPE 299
Query: 584 MMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS 643
+ A +PAPVQV W+ YP T+G P +DY + D+ A PP + + E ++RL F S
Sbjct: 300 VFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTS 359
Query: 644 PEAG--PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 701
P L + FNN K+ P+ + +L VP+S L + P
Sbjct: 360 RVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGP---G 416
Query: 702 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYM 761
R + G+++ R+ +P L + ++ Y D+ LDT PY TT ++L+
Sbjct: 417 EADARLRAFAHAQGVDAQRLVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWT 475
Query: 762 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRD 821
G P +T G A V SL +GL + ++ +V A+ LASD AL L +
Sbjct: 476 GCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDV 535
Query: 822 LMSKSPVCDGQNFALGLESTYRNMWHRYCKG 852
L S V FA + + + R+
Sbjct: 536 LRRASGVFHMDGFADDFGALLQALARRHGWL 566
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 7e-31
Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 7/150 (4%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
A+ P + L + G+T G L + P
Sbjct: 3 ADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG 55
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ A LG V ++ A ++A+ P + +G ++ G E+A A Y
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
R + P + L L+
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALD 145
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-28
Identities = 23/201 (11%), Positives = 50/201 (24%), Gaps = 7/201 (3%)
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
+ + + + A++ P A+ L + ++ P + EA
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
+G + + A ++ +P + AL D G A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-------GQAEAAAAA 113
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
Y +A L + + V A + +D
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDAS 173
Query: 349 NLDKAVECYQMALSIKPNFSQ 369
++ A +I +
Sbjct: 174 AAEQLACARTRAQAIAASVRP 194
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-26
Identities = 21/156 (13%), Positives = 37/156 (23%), Gaps = 9/156 (5%)
Query: 98 GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
AV+ PQ+ A G + + L+ P + A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
L V + +A P + LG + Q + A Y
Sbjct: 63 LGRVRWTQQ-------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251
+A P + + D + +
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 7e-20
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 7/145 (4%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
L + + A + + + L P + A G +
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ R EAA +A A P + + LG +L+ AG + Y A +
Sbjct: 67 RWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTA 210
+ P L L +
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRAL 144
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 20/111 (18%), Positives = 30/111 (27%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
A+ + L G+ EA G Q A +A P
Sbjct: 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
++ G +D G+ AA +Y +A P L L
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 10/99 (10%), Positives = 28/99 (28%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
+ ++ + +A L + + + + G L+ A +++ A +L P
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152
+ + + +A A
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 424 bits (1091), Expect = e-136
Identities = 150/753 (19%), Positives = 244/753 (32%), Gaps = 49/753 (6%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
P +A + + + +++G + EA Y KAL P + A LA VL G
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG------ 57
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
Q+ + Y EA++I P +A AY N+G E+ AL CY +A P +A+A+ N
Sbjct: 58 -KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+ I+K+ G++ AIA Y L + P+F A N+A L + D K
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC-------DWTDYDERMK 169
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
K + + L + + A
Sbjct: 170 KLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI----------- 217
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
+ S +G V + G + M NP E +
Sbjct: 218 -NVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALS 276
Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 470
+ + + N + + I+ + + +R
Sbjct: 277 PDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALR 336
Query: 471 LYSQYTSWDNTKDPERPLVIGYVSPDYFTH---SVSYFIEAPLVYHD-YQNYKVVVYSAV 526
W L + Y+ D T + E + +
Sbjct: 337 PAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF-----IGDHA 391
Query: 527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMA 586
+ G I+ + ++ + A + +V++ +
Sbjct: 392 NMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADS-- 449
Query: 587 CQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPE----CFLCYTP 642
+ + P T + I L P
Sbjct: 450 ---SNTALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVP 506
Query: 643 SPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 702
L I + +FN L KI P LQ+WA IL VPNS L + P
Sbjct: 507 RTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG-- 564
Query: 703 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG 762
+ +GL R+ P + +H++ L D+ LDT G TT + L+ G
Sbjct: 565 -EPNIQQYAQNMGLPQNRIIFSP-VAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAG 622
Query: 763 VPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDL 822
P VTM G A V S LT +G LIAKN EY +A++L +D+ L +R +
Sbjct: 623 TPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQ 682
Query: 823 MSKSPVCDGQNFALGLESTYRNMWHRYCKGDVP 855
SP+ + + + + LE Y MW Y G+ P
Sbjct: 683 RISSPLFNTKQYTMELERLYLQMWEHYAAGNKP 715
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 305 bits (781), Expect = 2e-91
Identities = 110/518 (21%), Positives = 204/518 (39%), Gaps = 37/518 (7%)
Query: 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311
P + NN+A + G+I + V Y+KAL +A A NL
Sbjct: 2 PGSCPTHADSLNNLANIKREQ-------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 54
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371
+ K A++ Y+ A +P A+A +N+G K+ ++ A++CY A+ I P F+ +
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
+NL ++ G + A A+ P + +AY NL + + + ++ + I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 432 DPDSRNAGQN----RLLAMNYINEGHDDKLF---EAHRDWGKRFMRLYSQYTSWDNTKDP 484
D + +M Y K + K + Y + K
Sbjct: 175 VADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS 234
Query: 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAKTIRFREKVMKK 543
+ L +GYVS D+ H S+ +++ H+ ++V Y+ + ++ +
Sbjct: 235 DGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA--- 291
Query: 544 GGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNT 602
+ D+ I K A + +D I ILV + G+T + + A +PAP+Q W+GYP T
Sbjct: 292 -NHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGT 350
Query: 603 TGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS---PEAGPVCPTPALTNGF 659
+G +DY ITD P E +++ E+L +P F + P +NG
Sbjct: 351 SGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGH 410
Query: 660 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 719
I ++N + L ++P+ ++V P D+ ++
Sbjct: 411 I----YDNRIVLNG---IDLKAFLDSLPDVKIVKMKCPDGGDNADSS-------NTALNM 456
Query: 720 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 757
V + I M + I+++ F + T +
Sbjct: 457 PVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQ 494
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 99.9 bits (248), Expect = 1e-21
Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A++L+ + K +AL Y+ + +A+ G L+ + A ++ A++++P
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A AH++ ++KD G + EA SY AL P + +L L++ +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-------PDAYCNLAHCLQIVCDWT 162
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
D ++ + + I L V+ + KA ER
Sbjct: 163 DYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCL 214
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 405 bits (1044), Expect = e-134
Identities = 102/388 (26%), Positives = 175/388 (45%), Gaps = 14/388 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A+ F A + ++ N + + + A+K +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A+++ G +YK+ G+L EA E Y AL P + LA L G + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG-------DME 118
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+Q Y AL+ +P +LG + L + + A CY KA +P +A A+ N+G +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+ +G++ AI +E+ + + PNF A N+ L + ++ VA Y +AL
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR-------IFDRAVAAYLRALS 231
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
+ ++A NL Y E D+AI Y A PH +A NL K++ ++ +A
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+CY AL + P + SLNNL + QG ++ A + KA+ P +A A++NL + +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNR 442
G + A+ Y++ ++I P +A N
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNM 379
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 321 bits (826), Expect = e-102
Identities = 96/364 (26%), Positives = 172/364 (47%), Gaps = 18/364 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
++I + + + ++++ EA+ G + G+L A + + A++L
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK--ERGQLQEAIEHYRHALRLK 97
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P + + G + A ++Y AL +P V +DLG LK G
Sbjct: 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-------YCVRSDLGNLLKALGR 150
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
++ Y +A++ P++A A+ NLG V++ + A+ +EKA P + +AY N+G
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ K + A+A Y R L++SPN + N+A + G I+ + Y++A
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-------LIDLAIDTYRRA 263
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
+ H+ DA NL A E A Y A P A++ NNL I +++ N+++
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
AV Y+ AL + P F+ + +NL V QGK+ A ++AI +PT+A+AY+N+G
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Query: 413 RDAG 416
++
Sbjct: 384 KEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 4e-84
Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 7/281 (2%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+L AG+ + + + + +P L ++ + + D + A +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A AL GD
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA-------GD 116
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ V Y AL YN +LG + + + A Y A P+ A A +NLG
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
++ + + A+ ++ A+++ PNF + NLG V D A +A++ +P +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
A + NL +Y + G I LAID Y + +++ P +A N
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 5e-72
Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 18/297 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
A L + A+ Y L+ + G L+ +GRL A + +A++
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK--ALGRLEEAKACYLKAIETQ 165
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P A A ++ G ++ +G + A + KA++ DP++ +LG LK A
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDAYINLGNVLKEARI 218
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ Y AL + P++A + NL VY E D A+ Y +A +P + +AYCN+
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
K +G + A CY L + P + NN+A + G +I + V Y+KA
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG-------NIEEAVRLYRKA 331
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
L +A A NL + K A++ Y+ A +P A+A +N+G K+ +
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 1e-67
Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 7/249 (2%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
L + ++ A + + P + I+ L+ + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
+P A +N+ + G + + + +Y+ AL + D NL A
Sbjct: 62 QNPLLAEAYSNLGNVYKER-------GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373
+ A+ Y A +NP ++LG + K L++A CY A+ +PNF+ + +N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
LG V+ QG++ A EKA+ +P + +AY NLG + ++A A+ AY + L + P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 434 DSRNAGQNR 442
+ N
Sbjct: 235 NHAVVHGNL 243
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631 | Back alignment and structure |
|---|
Score = 385 bits (989), Expect = e-122
Identities = 82/547 (14%), Positives = 179/547 (32%), Gaps = 37/547 (6%)
Query: 314 LKFDMAIVFYELAFHFNPHCAEACN-NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
+ +A++F F H + N +LD + + S
Sbjct: 105 YQRWLALIFASSPFVNADHILQTYNREPNRKNSLEIHLDSSKSSLIKFCILYLPESNVNL 164
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
NL V++ + A+ + A+N + + +Q ++
Sbjct: 165 NLDVMWNIS-PELCASLCFALQSPRFIGTSTAFNKRATILQWF------PRHLDQLKNLN 217
Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN-----TKDPERP 487
+ + +Y + + A +R + S+Y D +P
Sbjct: 218 NIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRH--IESEYGWKDRDVAHIGYRNNKP 275
Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 547
+++ + + HS+ + + +++ ++ + D ++ +
Sbjct: 276 VMVVLLEHFHSAHSIYRTH-STSMIAAREHFYLIGLGSP-SVDQAGQEVFDE-------F 326
Query: 548 RDIYGIDEKKVAAMVR----EDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTT 603
+ G + K+ +R + I + + + AP+Q +G+P TT
Sbjct: 327 HLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATT 386
Query: 604 GLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT-PALTNGFITF 662
I+Y I + D +++ E L+RLP+ L Y PS A +
Sbjct: 387 HSDFIEYVIVE--DDYVGSEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNI 444
Query: 663 GSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD 722
G + K+ P L+ I + + H ++ + L
Sbjct: 445 GIASTTMKLNPYFLEALKAIRDRAKVKVHF-HFALGQSNGITHPYVERFIKSYLGD-SAT 502
Query: 723 LLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 782
P H +++ D+ ++ FP+ T + + +G+ V G+ ++ L
Sbjct: 503 AHPH-SPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLF 561
Query: 783 TKVGLK-HLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDG--QNFALGLE 839
++GL LIA DEYV+ A++LA + LR + + + + G +
Sbjct: 562 KRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFL 621
Query: 840 STYRNMW 846
Sbjct: 622 EKLNAFL 628
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 1e-85
Identities = 63/403 (15%), Positives = 133/403 (33%), Gaps = 24/403 (5%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD---SFSEAVK 110
+ + + F A Y+ L D+ EA + ++S K
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
D + + + AE Y +++ + +L +L +
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS-------SDLLLCKADTLFVR 318
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
D + + L+IDP+ Y E + + P A +
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+G+ Y + A + + + P F A A + G + +Q ++ Y
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-------EHDQAISAYT 431
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
A LG+ + ++ +A + + ++ + N LGV+ ++ ++
Sbjct: 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491
Query: 351 DKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
A+ +Q AL + + ++ + NLG Y DAA + + + + + A
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
+ + ++Y LAI + L I P+ A A+
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 259 bits (662), Expect = 7e-76
Identities = 63/402 (15%), Positives = 120/402 (29%), Gaps = 27/402 (6%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ L N R K + L + + ++ ++ +G + A + +
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEA---SMCYLRGQVYTNLSNFDRAKECYK 224
Query: 107 EAVKLDPQNACAHTHCG---ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
EA+ +D + A +L DE + +Y D ++ + L L
Sbjct: 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS-------LYML 277
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
+ + + Y ++ + ++ L K P
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
+ Y G+ + P + + I + I+
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN-------KIS 390
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
+ Y+ K+ + + A ++ + D AI Y A LG+
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------ 397
+ N+ A E Q + ++ LN LGVV + M A + A+
Sbjct: 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510
Query: 398 -NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+A + NLG YR AIDA Q L + + N
Sbjct: 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 5e-74
Identities = 53/377 (14%), Positives = 117/377 (31%), Gaps = 22/377 (5%)
Query: 46 FEGKDALSYANILRSRNKFVDALAL-YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
+E D L ++L + ++ L L Y ++D+ + + + +
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ ++ +++ R ++ K L DP L + G
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
+ + P A + +G+ Y + + A + K++ P +
Sbjct: 354 -------EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A+ + G+ + AI+ Y + + + + LG +I
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-------NILL 459
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA-------FHFNPHCAEAC 337
Y + + + + LGV AI ++ A A
Sbjct: 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
NLG Y+ D A++ L + N + + +VY + A + +++A
Sbjct: 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579
Query: 398 NPTYAEAYNNLGVLYRD 414
+P A + L +
Sbjct: 580 SPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 237 bits (606), Expect = 5e-68
Identities = 65/423 (15%), Positives = 122/423 (28%), Gaps = 34/423 (8%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV----------------EAHIGKGICL 92
DA A + + A L + + A G
Sbjct: 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN 177
Query: 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152
+ + A + + + A G +Y + A E Y +AL D A
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236
Query: 153 AECLAIVLTDLGTSLKLAGNTQDGIQK--YYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
+ L L A D + K Y K D + + Y L + +
Sbjct: 237 FDQLV------SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
Y + ++ R +A + L + P +L
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+ G K KL + + A +G+ Y + K A ++ + +
Sbjct: 351 ESGEKNKL-------YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390
P A + D+A+ Y A + LG+ + G + A E
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463
Query: 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
++ + A N LGV+ + + AI+ ++ L + +++ + + N
Sbjct: 464 LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT--WAN 521
Query: 451 EGH 453
GH
Sbjct: 522 LGH 524
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 5e-29
Identities = 45/267 (16%), Positives = 76/267 (28%), Gaps = 16/267 (5%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE------ 259
QY A EK +A+ + +Y GD A + + +
Sbjct: 99 QYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157
Query: 260 ---IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316
+ + AL LG D + A Y G Y + F
Sbjct: 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNF 216
Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE---CYQMALSIKPNFSQSLNN 373
D A Y+ A + C EA + L + + + + Y F +SL
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276
Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
L + T AE +I ++ + + L+IDP
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336
Query: 434 DSRNAGQNRLLAMNYINEGHDDKLFEA 460
+ + L + G +KL+
Sbjct: 337 YNLDVYPLHLAS--LHESGEKNKLYLI 361
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 278 bits (714), Expect = 3e-84
Identities = 41/400 (10%), Positives = 102/400 (25%), Gaps = 17/400 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++ A+ ++ L + V A Q +
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P+ A + + +A P + + G
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ-------VVAIASNGG 182
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + G L L +A P
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 242
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
A + G + ++ + + ++P +A + + L + +
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE-------TVQRL 295
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ +A A+ + G + + A P A + +
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ + + + A + P ++ + G + ++ +A P A
Sbjct: 356 ALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ + ++ + Q + P A +
Sbjct: 416 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 6e-81
Identities = 41/384 (10%), Positives = 95/384 (24%), Gaps = 14/384 (3%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S+ ++ L + V A Q + +A L
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P+ A G + + +A P + + G +
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ-------VVAIASNGGGKQALET 223
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A P A +
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ ++ + + ++P +A + L + + + +A
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE-------TVQRLLPVLCQA 336
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + + + A P A + G + + + +
Sbjct: 337 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQR 396
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ A + P ++ + + ++ +A P A + G
Sbjct: 397 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGR 456
Query: 413 RDAGSISLAIDAYEQCLKIDPDSR 436
SI + + L +
Sbjct: 457 PALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 266 bits (682), Expect = 9e-80
Identities = 45/402 (11%), Positives = 101/402 (25%), Gaps = 21/402 (5%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEK-----DSGNVEAHIGKGICLQMQNMGRLAFD 103
L A R V+A+ + L V A Q +
Sbjct: 36 GQLLKIAK--RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLP 93
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
+A L PQ A + + +A P + +
Sbjct: 94 VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASH 146
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
+ Q + +A + P A + G L L +A P
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
A + G + ++ + + ++P +A + L +
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL-------ETVQ 259
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
+ + +A A+ + + + A P A + G
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ + + + + A + P ++ + + ++ +A P
Sbjct: 320 KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 379
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A + G + ++ + Q + P+ A +
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 2e-74
Identities = 39/379 (10%), Positives = 99/379 (26%), Gaps = 14/379 (3%)
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
A L L+ D+G + +G ++ + + L P+ A
Sbjct: 23 AGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGK 82
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
+ + +A P + + + Q + +A +
Sbjct: 83 QALETVQRLLPVLCQAHGLTPQQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGL 135
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
P A + L L +A P A + G + ++ +
Sbjct: 136 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
+ ++P +A + L + + + +A A+ +
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASN 248
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G + + A P A + + + + + + A + P
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
++ + G + ++ +A P A + + ++ +
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368
Query: 427 QCLKIDPDSRNAGQNRLLA 445
Q + P+ A +
Sbjct: 369 QAHGLTPEQVVAIASNGGG 387
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 226 bits (577), Expect = 5e-65
Identities = 36/363 (9%), Positives = 93/363 (25%), Gaps = 14/363 (3%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
H ++ + +A + ++LD G + E
Sbjct: 5 HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP 64
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+ P + + + Q + +A + P A +
Sbjct: 65 LNLTPEQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
L L +A P A + + +++ + + ++P +A
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
+ L + + + +A A+ + G + +
Sbjct: 178 ASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A P A + G + + + + + A + P ++ +
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ ++ +A P A + G + ++ + Q + P A +
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350
Query: 443 LLA 445
Sbjct: 351 DGG 353
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 1e-61
Identities = 37/332 (11%), Positives = 86/332 (25%), Gaps = 14/332 (4%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
++ H E L A E L D L I T+++
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQ-----LLKIAKRGGVTAVEAVHAW 56
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
++ + L + P A + L L +A P A +
Sbjct: 57 RNALTG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 114
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ ++ + + ++P +A + L + + +A
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL-------ETVQALLPVLCQAH 167
Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
A+ + G + + A P A + G + + + +
Sbjct: 168 GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 227
Query: 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+ A + P ++ + G + ++ +A P A + +
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ 287
Query: 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
++ + Q + P A +
Sbjct: 288 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-40
Identities = 32/234 (13%), Positives = 62/234 (26%), Gaps = 16/234 (6%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++ A+ ++ L + V A G Q +
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L PQ A + + +A P + + G
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASNGG 386
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + L L +A P
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV 446
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
A + G + + ++ + LA N + +AL LG + L+
Sbjct: 447 VAIASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGGRPALD 494
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 4e-79
Identities = 63/326 (19%), Positives = 109/326 (33%), Gaps = 20/326 (6%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+++ + + + Y+ P A + G G+ I
Sbjct: 38 NQEAQNQVTVSASEKGYYFHTENPFKDWPGA-------FEEGLKRLKEGDLPVTILFMEA 90
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
A+ DP A A+ LG+ +E A+ ++ +P +A + V Y N +
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG---VAYYKKALYYNWHY 299
A + + +P ++ N + K D + Y +A + N
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210
Query: 300 ADAM--YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
D LGV + +F+ AI + A P N LG + D ++AVE Y
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------YNNLG 409
AL I+P F +S NLG+ G A A++ N+
Sbjct: 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDS 435
R A S+ + ++ D D
Sbjct: 331 AALRIALSLMDQPELFQAANLGDLDV 356
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 252 bits (646), Expect = 3e-76
Identities = 58/326 (17%), Positives = 110/326 (33%), Gaps = 20/326 (6%)
Query: 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192
A + + E + + YY + P
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ G+ + + E A L+ P AEA+ +G+ + ++AI +RCL
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ PN A +A++ T+ K + N Y + N + G
Sbjct: 127 ELQPNNLKALMALAVSYTNTS-------HQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179
Query: 313 MLKFDMAIVFYEL----------AFHFNPHCAEAC--NNLGVIYKDRDNLDKAVECYQMA 360
+ + V + A H N + LGV++ ++A++ + A
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L+++P N LG + + A E +A+ P + + NLG+ + G+
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAM 446
A+ + L + SRN Q A+
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAI 325
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 1e-60
Identities = 53/323 (16%), Positives = 101/323 (31%), Gaps = 31/323 (9%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
A + E + +D G+ EA GI + A + +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TS 166
+L P N A + Y + +A E+ + +P YK + S
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186
Query: 167 LKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
+ + + Y EA + LGV++ +++ A+ + A RP
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+ +G N E A+ Y R L + P F ++ N+ I+ +L G +
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL-------GAYRE 299
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEML--KFDMAIVFYELAFHFNPHCAEACNNLGV 342
V+ + AL + A + +A+ + P +A N
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD-----QPELFQAANL--- 351
Query: 343 IYKDRDNLDKAVECYQMALSIKP 365
++ A ++ P
Sbjct: 352 ---------GDLDVLLRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 7e-47
Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 27/251 (10%)
Query: 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVI--------YKNRGDLESAIACYERCLAVS 255
M+++ A E + M +N+ + ++ Y
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
+ GD+ + + + A+ + A+A LG+ E
Sbjct: 62 FKDWPGAFEEGLKRLKE-------GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENEN 114
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
AIV + P+ +A L V Y + + A E + + P + + N
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174
Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEA------------YNNLGVLYRDAGSISLAID 423
+ +M + Y EA LGVL+ +G + AID
Sbjct: 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 424 AYEQCLKIDPD 434
A+ L + P+
Sbjct: 235 AFNAALTVRPE 245
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 2e-42
Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 4/218 (1%)
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
+ E A A E + MA + + + ++ Y +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ G+ + + I+F E A +P AEA LG+ + +N A+
Sbjct: 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
Q L ++PN ++L L V YT A E ++ I NP Y N
Sbjct: 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEG 452
+S + + A + G
Sbjct: 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 4e-75
Identities = 47/292 (16%), Positives = 88/292 (30%), Gaps = 22/292 (7%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
G+ Y Y G+ +L A +E P EA+ +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+G+ AI + P +A++ T+ + N +A +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH-------NANAALASLR 113
Query: 291 KALYYNWHYADA---------------MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
L Y + + + ++ A NP+ A+
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
+LGV+Y +N D A + A+ ++P+ +Q N LG + A + +A+
Sbjct: 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
NP Y N+ V Y + LA + + +
Sbjct: 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 2e-63
Identities = 50/327 (15%), Positives = 101/327 (30%), Gaps = 38/327 (11%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ + + +A +E V + EA G+ LA + + A
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------- 162
LDP++ H + + +E A S L + P Y+ D
Sbjct: 83 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142
Query: 163 -LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
++ + AL+++P+ A + +LGV+Y+ YD+A +A R
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P A+ + +G N + A+ Y R L ++P + NMA++ +++
Sbjct: 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM-------SQ 255
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ +A+Y + +
Sbjct: 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW----------------------DFFR 293
Query: 342 VIYKDRDNLDKAVECYQMALSI-KPNF 367
++ + D Y + F
Sbjct: 294 MLLNVMNRPDLVELTYAQNVEPFAKEF 320
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-28
Identities = 22/152 (14%), Positives = 44/152 (28%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
Y + E G+ NL +A ++ P ++ +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
G+ K A + A +P + L V + + + + A+ + L P
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 435 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
G L A I++ + +
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 35/234 (14%), Positives = 62/234 (26%), Gaps = 52/234 (22%)
Query: 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ + S + N++ + L LE + + + H G+ +
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS--NN 187
Query: 100 L--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
A + AV+L P +A G + R EA ++Y++
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR---------------- 231
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
AL I+P Y YN+ V YS + QYD A +A
Sbjct: 232 -------------------------ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 218 ALERPMYAEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
+ + R P+ +
Sbjct: 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR-----PDLVELTYAQNVEP 315
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 1e-74
Identities = 64/330 (19%), Positives = 115/330 (34%), Gaps = 33/330 (10%)
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLK-----LAGNTQDGIQKYYEALKIDPH---- 189
+ +A SA S + L L ++ L+ Y + + +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
P + G+ + A+ +E A + P + EA+ +G AI+
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA------- 302
RCL + P+ + A +A++ T+ Q + L Y YA
Sbjct: 123 RCLELKPDNQTALMALAVSFTNES-------LQRQACEILRDWLRYTPAYAHLVTPAEEG 175
Query: 303 --MYNLGVAYGEM------LKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDK 352
LG + + F + A +P + LGV++ DK
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
AV+C+ ALS++PN N LG + + A +A+ P Y + NLG+
Sbjct: 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ G+ A++ + + L + SR
Sbjct: 296 INLGAHREAVEHFLEALNMQRKSRGPRGEG 325
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 3e-69
Identities = 53/322 (16%), Positives = 100/322 (31%), Gaps = 24/322 (7%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+ +Y K + + G G+ + + + A++ DP + A
Sbjct: 44 LTSATYDKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA 100
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ LG +E Q A+ + +P A + V + N A L
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160
Query: 254 VSPNFEIAKNNM--AIALTDLGTKVKLEGDINQG------VAYYKKALYYNWHYADAM-- 303
+P + LG ++ G + + A+ + D
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220
Query: 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
LGV + ++D A+ + A P+ N LG + + ++AV Y+ AL +
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280
Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-------- 415
+P + +S NLG+ G A E +A+ G + +
Sbjct: 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340
Query: 416 ---GSISLAIDAYEQCLKIDPD 434
G A + L
Sbjct: 341 SMLGQSDAYGAADARDLSTLLT 362
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 226 bits (577), Expect = 2e-66
Identities = 57/325 (17%), Positives = 103/325 (31%), Gaps = 40/325 (12%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+A+ L+E +++D ++EA G LA +
Sbjct: 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL--TDLGTS 166
++L P N A + + +E +A E L P+Y LG S
Sbjct: 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184
Query: 167 LKLAGNTQDG------IQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAA 218
++ G+ + + A+++DP LGV+++ +YD A+ C+ A
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP + +G N E A+A Y R L + P + ++ N+ I+ +L
Sbjct: 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL------ 298
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
G + V ++ +AL G +
Sbjct: 299 -GAHREAVEHFLEALNMQRKSRGPRGEGGAMS-----------------------ENIWS 334
Query: 339 NLGVIYKDRDNLDKAVECYQMALSI 363
L + D LS
Sbjct: 335 TLRLALSMLGQSDAYGAADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-32
Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 16/194 (8%)
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKF------------DMAIVFYELAFHFNPHC--- 333
+++A D L EM K D+ Y+ + F
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 334 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392
G+ +L AV ++ A+ P ++ LG + A +
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
+ + P A L V + + A + L+ P + G
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 453 HDDKLFEAHRDWGK 466
++ +
Sbjct: 183 PSKRILGSLLSDSL 196
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 250 bits (639), Expect = 3e-73
Identities = 54/458 (11%), Positives = 115/458 (25%), Gaps = 70/458 (15%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ + Y + S + LE + +A + + + A
Sbjct: 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116
Query: 106 SEAVKLDPQNACAHTHC-------------------------GILYKDEGRLVEAAESYH 140
+ L+ A + L +
Sbjct: 117 -SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175
Query: 141 KALSADPSYKPAAECLAIVLTD-----------------LGTSLKLAGNTQDGIQKYYEA 183
L + A L K +
Sbjct: 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
+ + A A G+ + A +++ P +Y + + ++ + +
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQE 294
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303
+++ + ++P + + L D ++KA N
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-------DYKNAKEDFQKAQSLNPENVYPY 347
Query: 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
L + KF + F+ P E I DR + D A++ Y +A +
Sbjct: 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407
Query: 364 KPNFSQSLNNLGVVYT----------------VQGKMDAAAEMIEKAIAANPTYAEAYNN 407
+ + +G + + K +AA +++ KA +P +A
Sbjct: 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
L L I AI+ +E + Q A
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFA 505
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 249 bits (637), Expect = 5e-73
Identities = 57/423 (13%), Positives = 120/423 (28%), Gaps = 22/423 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + F +A+ Y+ +E D + C + ++A+++ P
Sbjct: 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
++ A + G +A LS + + A + +L + +
Sbjct: 92 HSKALLRRASANESLGNFTDAMFDL-SVLSLNGDFDGA--SIEPMLERNLNKQAMKVLNE 148
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM--------QYDTALGCYEKAALERPMYAE 226
+ + ++ P G+ S L YDTA A +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208
Query: 227 AYCNM--GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+ ++ K+ S ++ + N +A I ++
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-------NLLD 261
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
++++ + ++ L + + F++ A NP + G +Y
Sbjct: 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404
+ A E +Q A S+ P L + QGK + + PT E
Sbjct: 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380
Query: 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-DKLFEAHRD 463
+ D G AI Y+ +++ + D
Sbjct: 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440
Query: 464 WGK 466
K
Sbjct: 441 EEK 443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 248 bits (634), Expect = 1e-72
Identities = 66/381 (17%), Positives = 128/381 (33%), Gaps = 42/381 (11%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
+ + + + + A AL L++ + L ++ + + L
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
A A + GI + + L++A ++++ P+ L +L N+
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN--------SYIFLALTLADKENS 292
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
Q+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P Y +
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ +G + A + P A LTD G D + + Y A
Sbjct: 353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG-------DFDTAIKQYDIAK 405
Query: 294 YYNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELAFHFNPHCAEAC 337
+G G+ KF+ AI A +P +A
Sbjct: 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
L + + +D+A+E ++ + + + L A A I+K + A
Sbjct: 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT---------FAEAAKIQKRLRA 516
Query: 398 NPTYAEAYNNLGVLYRDAGSI 418
+P + YR G +
Sbjct: 517 DPIISAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 4e-62
Identities = 53/355 (14%), Positives = 114/355 (32%), Gaps = 47/355 (13%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G + + PS + A A+ L + G A N + I+ Y A+++DP+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQA---YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
Y N+ Y + + KA +P +++A ++ G+ A+
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117
Query: 250 RCLAVSPNFEIA-------------------------KNNMAIALTDLGT---------- 274
L+++ +F+ A + + L +
Sbjct: 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 275 -----KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--MLKFDMAIVFYELAF 327
V + + A AL + D Y + + + +
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ A A G+ + ++NL A Q ++++ P S L + +
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ +KA+ NP Y Y + G +Y A + +++ ++P++
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 3e-27
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 5/170 (2%)
Query: 315 KFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
+P A N G + N ++A++ YQ A+ + PN
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
+N+ Y G ++ E KA+ P +++A G+ + A+ L
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV-LS 120
Query: 431 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
++ D A +L N + +D G+ L S +
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 3e-25
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 30/216 (13%)
Query: 280 GDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
G G + YA + N G + F+ AI +Y+ A +P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
+N+ Y +L+K +E AL IKP+ S++L G A + +
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVL 119
Query: 396 AANPTYAEA-------------------------YNNLGVLYRDAGSISLAIDAYEQCLK 430
+ N + A + S++ ++ L+
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 431 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
+ + ++ + A+ +
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 21/121 (17%), Positives = 30/121 (24%), Gaps = 9/121 (7%)
Query: 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD 103
K S KF A+ L E D + +A IG A +
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
F ++ L + + + K L ADP E
Sbjct: 484 LFEDSAILARTMDEKLQ--ATTFAEAAK-------IQKRLRADPIISAKMELTLARYRAK 534
Query: 164 G 164
G
Sbjct: 535 G 535
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 4e-72
Identities = 55/372 (14%), Positives = 116/372 (31%), Gaps = 41/372 (11%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + + DAL+ + ++ D N A+ + + A ++ + L
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
A G L +G+L EA + + K L ++PS + E + ++
Sbjct: 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
+ I + L++ A + + + A+ + A+ + E
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
A+ + +Y GD E +++ CL + + + + KL I
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-------KLNKLIESAE 242
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGV 342
+ ++ A YE P AE + +
Sbjct: 243 ELIRDG----------------------RYTDATSKYESVMKTEPSVAEYTVRSKERICH 280
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
+ + +A+ L ++P+ +L + Y ++ D A + E A N
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340
Query: 403 EAYNNLGVLYRD 414
+ L R
Sbjct: 341 QIREGLEKAQRL 352
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 9e-70
Identities = 46/362 (12%), Positives = 100/362 (27%), Gaps = 45/362 (12%)
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ H G G+L +A +H A+ DP I T G ++
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-------YIAYYRRATVFLAMGKSK 54
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + + + A G + + + D A ++K P E +
Sbjct: 55 AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114
Query: 235 YK---------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
K + D +AI ++ L V + A G
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG------ 168
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ + ++ K A +A Y + Y ++ ++++ + +
Sbjct: 169 -EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227
Query: 340 L------------GVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGK 383
A Y+ + +P+ +S + ++ K
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
A + + + P A + Y AI YE + + + + +
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347
Query: 444 LA 445
A
Sbjct: 348 KA 349
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 1e-47
Identities = 44/243 (18%), Positives = 72/243 (29%), Gaps = 9/243 (3%)
Query: 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+K E + S A + A+ + +LE + E + C + R
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A A KL N A LY G + + L D +K V
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 160 -----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTA 210
L + L G D KY +K +P A + + +S+ + A
Sbjct: 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
+ + P A + Y + AI YE + N + + + A
Sbjct: 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Query: 271 DLG 273
L
Sbjct: 352 LLK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 7e-29
Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 18/174 (10%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ LG + A+ + A +P A ++ A+
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-------- 411
+++K +F+ + G + QGK+D A + +K + +NP+ E L
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 412 -------YRDAGSISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEGHDD 455
D + AI ++ L++ + R + + D
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 25/133 (18%), Positives = 41/133 (30%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
E LG L A+ + A+ P+ + V+ GK AA + K
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
IA + A G L G + A D +++ LK +P + + +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 454 DDKLFEAHRDWGK 466
D
Sbjct: 123 LRSQALDAFDGAD 135
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 23/169 (13%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAH------------IGKGICLQMQNMGRLAF 102
+ + +L+ L+ D + I L A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254
Query: 103 DSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ +K +P A + + + + VEA + L +P A
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA------ 308
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
L D + + + IQ Y A + + + L L Q
Sbjct: 309 -LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 8e-72
Identities = 42/333 (12%), Positives = 102/333 (30%), Gaps = 24/333 (7%)
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
E+V +N + + + DP + L +L
Sbjct: 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL 69
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCYEKAALERP 222
+ ++ + + P +++ +G Y + + + A KA
Sbjct: 70 N-------KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
Y A+ G + + + A+A Y + + + + +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-------NS 175
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--------- 333
++ +AL M+ +GV + ++ A ++ A
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
NNLG + + +A++ ++ AL + P + + + +G ++++ G + A +
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
A+ + LG S A +
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 7e-71
Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 17/298 (5%)
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
V+ L + + + ++ DP +A EL + + K
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 219 LERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
P ++ +G Y G E A + + + A +
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---- 139
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+ +Q +A Y A M +G+ YG +A F+ A P
Sbjct: 140 ---EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGKMDAAA 388
+ +GV+ A + + AL + LNNLG V K A
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
+ +A+ P A Y+ +G ++ G+ A+D + L + D + +
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 1e-70
Identities = 50/324 (15%), Positives = 114/324 (35%), Gaps = 24/324 (7%)
Query: 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
++ N++ + ++ + S ++ DP +A + + E
Sbjct: 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANE 74
Query: 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPA 193
HK + PS + +G + G+ + ++Y A ++ Y PA
Sbjct: 75 LFYLSHKLVDLYPSN-------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ G ++ ++D A+ Y AA +G+ Y + + A + + L+
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL---------YYNWHYADAMY 304
++P + + + G+ ++ AL + +
Sbjct: 188 IAPEDPFVMHEVGVVAFQN-------GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240
Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
NLG ++ K+ A+ ++ A P A + +G I+ N + AV+ + AL ++
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAA 388
+ + S+ LG + A
Sbjct: 301 RDDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 5e-60
Identities = 43/270 (15%), Positives = 80/270 (29%), Gaps = 15/270 (5%)
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
E++ +L + + + P +A
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
+ + + P+ ++ + +G K Y KA
Sbjct: 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK------NEHARRYLSKATTLEK 122
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
Y A G ++ + D A+ Y A C +G+ Y +N A +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI---------AANPTYAEAYNNL 408
ALSI P ++ +GVV G+ A + A+ + NNL
Sbjct: 183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
G + R + A+D + Q L + P + +
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNAST 272
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 1e-54
Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 28/284 (9%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVK 110
+ L NK + L +++ N + G M G A S+A
Sbjct: 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV--GHKNEHARRYLSKATT 119
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
L+ A G + E +A +Y A + + + KLA
Sbjct: 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-NSKLA 178
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------ALER 221
+ + +AL I P + +GVV + ++ TA + A +
Sbjct: 179 ------ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
+ N+G + + A+ + + L + P + + + +G +
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG-------N 285
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
V Y+ AL ++ LG + A + ++
Sbjct: 286 FENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 5e-51
Identities = 33/251 (13%), Positives = 65/251 (25%), Gaps = 16/251 (6%)
Query: 212 GCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
G Y K + + ++ + D + + P
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 322
L +L +L K + + + +G Y + + A +
Sbjct: 61 VHIGTLVELNKANEL-------FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A A G + D+A+ Y A + + +G+ Y +
Sbjct: 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
A +A++ P + +GV+ G A + L+ N
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 443 LLAMNYINEGH 453
N GH
Sbjct: 234 KWEPLLNNLGH 244
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 7e-45
Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 20/238 (8%)
Query: 49 KDALSYANI----LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
+ +S+ + L +K A + A I G +++ A +
Sbjct: 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ A +L + G+ Y A + +ALS P V+ ++G
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVG 200
Query: 165 TSLKLAGNTQDGIQKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYE 215
G + + + +AL+ + P NLG V +L +Y AL +
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+A + P A Y +G I+ G+ E+A+ + L + + + + +
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYI 318
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 6e-71
Identities = 62/418 (14%), Positives = 129/418 (30%), Gaps = 38/418 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + + DAL+ + ++ D N A+ + + A ++ ++L
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
A G L +G+L EA + + K L ++PS E + ++ +
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
+G+ I + L++ A + + + A+ + A+ + E
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG- 285
A+ + +Y GD E +++ CL + + + + E I G
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272
Query: 286 ----VAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+ Y+ + + + + + + K AI P A
Sbjct: 273 YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
+ Y + D+A++ Y+ A N Q L + + +
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAY-EQCLKIDPDSRNAGQNRLLA---MNYINE 451
N E I AY + L+ PD+ + + A I
Sbjct: 393 NAKKQE-----------------IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 1e-62
Identities = 55/407 (13%), Positives = 112/407 (27%), Gaps = 60/407 (14%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + N + ++A +VE H+ G L A F AV DP
Sbjct: 10 GVDLGTENLYFQSMA-----------DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD 58
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N A+ ++ G+ A K + + A +L G
Sbjct: 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ-------GKLD 111
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + LK +P L + + + +
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQS-------------------QLIKSDEMQRLRSQALN 152
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
GD +AIA ++ L V + A G+ + ++ K A
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE-------GEPRKAISDLKAASK 205
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK--------- 345
+A Y + Y ++ ++++ + + + K
Sbjct: 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265
Query: 346 ---DRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
A Y+ + +P+ +S + ++ K A + + +
Sbjct: 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
P A + Y AI YE + + + + + A
Sbjct: 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 3e-52
Identities = 46/333 (13%), Positives = 99/333 (29%), Gaps = 56/333 (16%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
H G+ E ++ K L +LG L AG D +
Sbjct: 5 HHHSSGVDLGTENLYFQSMADVEKHL------------------ELGKKLLAAGQLADAL 46
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
+++ A+ DP AYY V+ + + AL K + + A G +
Sbjct: 47 SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
+G L+ A +++ L +P+ K ++
Sbjct: 107 QGKLDEAEDDFKKVLKSNPSENEEKEA--------------------------QSQLIKS 140
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ + + + AI F + AE + KA+
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR---- 413
+ A +K + +++ + +Y G + + + + + + + + + + +
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 414 --------DAGSISLAIDAYEQCLKIDPDSRNA 438
G + A YE +K +P
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 6e-49
Identities = 60/413 (14%), Positives = 118/413 (28%), Gaps = 75/413 (18%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFD 103
+ ++Y A + + K AL V++ A + +G L G+L A D
Sbjct: 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL--KQGKLDEAED 115
Query: 104 SFSEAVKLDPQNACAHTHCGIL---------------YKDEGRLVEAAESYHKALSADPS 148
F + +K +P L G A K L
Sbjct: 116 DFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
E A G + I A K+ A+Y + +Y +L ++
Sbjct: 176 DAELRELRAECFIKEG-------EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYK------------NRGDLESAIACYERCLAVSP 256
+L + + + + + K G A + YE + P
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288
Query: 257 NFE----IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ +K + + + + + L +A+ + AY
Sbjct: 289 SIAEYTVRSKERICHCFSKDE-------KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341
Query: 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-----------------DNLDKAVE 355
+D AI YE A N + + L + + ++
Sbjct: 342 EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401
Query: 356 CY-QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
Y ++AL P+ Q+ + AA K + ++P + +++
Sbjct: 402 AYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA-----KEVLSDPEMRKKFDD 449
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 9e-49
Identities = 38/268 (14%), Positives = 79/268 (29%), Gaps = 33/268 (12%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ +++ GV Y ++ + E + +G G L A++ +
Sbjct: 2 HHHHHHSSGVDLGT-------ENLYFQSMAD----VEKHLELGKKLLAAGQLADALSQFH 50
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
+ P+ IA A + G + K + + A G
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAM-------GKSKAALPDLTKVIQLKMDFTAARLQRGHL 103
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACN---------------NLGVIYKDRDNLDKAV 354
+ K D A ++ NP E + + + A+
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
L + ++ + +G+ A ++ A EA+ + LY
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 223
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNR 442
G L++ +CLK+D D + +
Sbjct: 224 LGDHELSLSEVRECLKLDQDHKRCFAHY 251
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 3e-47
Identities = 60/319 (18%), Positives = 95/319 (29%), Gaps = 20/319 (6%)
Query: 22 FLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN 81
F K +S P + A +K E + S A + A+A + +LE +
Sbjct: 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
E + C + R A A KL N A LY G + +
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236
Query: 142 ALSADPSYKPAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---- 192
L D +K V L + L G D KY +K +P A
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ + +S+ + A+ + P A + Y + AI YE
Sbjct: 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV-----------AYYKKALYYNWHYAD 301
+ N + + + A L K + GV AY K AL ++
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416
Query: 302 AMYNLGVAYGEMLKFDMAI 320
A + + A
Sbjct: 417 NEEEKKKAEKKFIDIAAAK 435
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 2e-36
Identities = 34/244 (13%), Positives = 67/244 (27%), Gaps = 33/244 (13%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
M+ + + GV ++A E + L G +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAA-------GQL 42
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
++ + A+ + A Y + M K A+ A G
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFS---------------QSLNNLGVVYTVQGKMDAA 387
+ + LD+A + ++ L P+ + Q L + + G AA
Sbjct: 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
++K + AE + G AI + K+ D+ A
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Query: 448 YINE 451
+ +
Sbjct: 223 QLGD 226
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-28
Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 11/168 (6%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+ ++ GV G + ++ E LG L A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSM-----------ADVEKHLELGKKLLAAGQLADALSQFH 50
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
A+ P+ + V+ GK AA + K I + A G L G +
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
A D +++ LK +P + + + G
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 2e-70
Identities = 63/421 (14%), Positives = 124/421 (29%), Gaps = 38/421 (9%)
Query: 55 ANILRSRNKFVDALALYE---IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
A+ KF DA+ + + + ++E + + + Q + + F A
Sbjct: 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139
Query: 112 DPQNACAHTHCGIL-------------YKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ + + + +Y ++ AD L
Sbjct: 140 PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199
Query: 159 VLTD-----LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
+ + K A ++ + K E K+ A + + G+ A
Sbjct: 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+KA P +Y M +I +R D +++ L + N + L
Sbjct: 260 IKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
+ +Q + KA + L KFD + A P
Sbjct: 319 -------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT---------VQGKM 384
E N I D+++ DKA++ Y +A+ ++ + +
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431
Query: 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
A ++EKA +P +A L + I AI +E+ + Q
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491
Query: 445 A 445
A
Sbjct: 492 A 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 2e-69
Identities = 60/426 (14%), Positives = 119/426 (27%), Gaps = 41/426 (9%)
Query: 50 DALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
D + Y+N S + + LE + + + + A S
Sbjct: 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97
Query: 107 E-AVKLDPQNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
++ D +A + + +L E A + +
Sbjct: 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157
Query: 164 GTSLKL------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE------------LM 205
S+ + Y E+ + D NL E
Sbjct: 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
++ L + + A + + G+ + D A ++ + + P + M
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYM 276
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A+ + D D + Y+ KAL + + + Y+ G + +D A ++
Sbjct: 277 ALIMADRN-------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A +P L + + D + A P + N + T + D
Sbjct: 330 AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDA---------GSISLAIDAYEQCLKIDPDSR 436
A + + AI Y + L A + A + E+ K+DP S
Sbjct: 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449
Query: 437 NAGQNR 442
A
Sbjct: 450 QAKIGL 455
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 1e-68
Identities = 53/398 (13%), Positives = 116/398 (29%), Gaps = 33/398 (8%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF----- 105
L+ + + + KF D E + + K L F F
Sbjct: 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176
Query: 106 ----SEAVKLDPQNACA-----HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
E+ + D + K + +AA + + L + + E L
Sbjct: 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI L G L + + +A+++ P +Y + ++ ++ ++K
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDK 295
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A + Y + G + + + A +++ + P +A
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN--- 352
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
+ + +A + + FD A+ Y+LA
Sbjct: 353 ----KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408
Query: 337 CNNLGVIY---------KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ + +N +A + A + P Q+ L + Q +D A
Sbjct: 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
+ E++ T E + + +A + I +
Sbjct: 469 ITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSD 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 228 bits (582), Expect = 1e-65
Identities = 54/420 (12%), Positives = 122/420 (29%), Gaps = 27/420 (6%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
K AL+ N K+ DA+ Y LE + + C + +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMS 62
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
++A++L P + + G+ +A LS + + A+ + +
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDAS---IEPMLERNL 118
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL-------------GVVYSELMQYDTALG 212
+ + ++ A + + + + +
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 213 CYEKAALERPMYAEAYCNM-----GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
Y+++ N+ K A +E L + E K +AI
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
+L G L+ D KKA+ ++ + + + +++ A
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ + + + G + N D+A + + A + P L + + K D
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ +A P E N + D A+ Y+ ++++ +
Sbjct: 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 213 bits (543), Expect = 3e-60
Identities = 58/368 (15%), Positives = 113/368 (30%), Gaps = 45/368 (12%)
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIG------------KGICLQMQNMGRLAFDSFSE 107
K A Y+ E D + + + D +E
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
KL + A + H GI + + A E KA+ P + +
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN--------SYIYMALIM 280
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
++ + + +ALK+D + + YY+ G + L YD A ++KA P
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
Y + + + + P N A LTD D ++ +
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN-------DFDKALK 393
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEML---------KFDMAIVFYELAFHFNPHCAEACN 338
Y A+ + G+ F A E A +P +A
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
L + ++++D+A+ ++ + + + L + A A +++ I ++
Sbjct: 454 GLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT---------FAEAAKVQQRIRSD 504
Query: 399 PTYAEAYN 406
P A+
Sbjct: 505 PVLAKKIQ 512
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-54
Identities = 40/351 (11%), Positives = 100/351 (28%), Gaps = 30/351 (8%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
+ A A G + + +A + Y+ AL + ++L G+
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------PVFYSNLSACYVSVGD 54
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---RPMYAEAYC 229
+ ++ +AL++ P Y+ L ++ A+ +L E
Sbjct: 55 LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL------EGDIN 283
+ + L+ + A + V
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEML------------KFDMAIVFYELAFHFNP 331
A Y ++ + + + NL E F+ +
Sbjct: 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
A + + G+ +++ A E + A+ + P S + ++ +
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYF 293
Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+KA+ + + Y + G + + A +++ ++DP++
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 4e-26
Identities = 39/254 (15%), Positives = 79/254 (31%), Gaps = 31/254 (12%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
E+ YA A + G + + AI Y L + + + +N++ +
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSV------- 52
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE---LAFHFNPHCAEA 336
GD+ + V KAL Y+ + A + KF A+ L FN E
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-------------SLNNLGVVYTVQGK 383
+ + L + A + S + K
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-----IDPDSRNA 438
+ +++ A+ +NL R S A +++ + + +D ++ +
Sbjct: 173 PELTFANYDESNEADKELMNGLSNLY--KRSPESYDKADESFTKAARLFEEQLDKNNEDE 230
Query: 439 GQNRLLAMNYINEG 452
LA++ + G
Sbjct: 231 KLKEKLAISLEHTG 244
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 3e-67
Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 44/283 (15%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+ +H + P + ++ G+ + + + +A++ + A
Sbjct: 3 SSHHHHHHSSGLVPR---GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
Y N + S + + + AL Y+KA A AY G +Y + + A +E+ L
Sbjct: 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
D Y LG ++
Sbjct: 120 AGME-----------------------------------------NGDLFYMLGTVLVKL 138
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373
+ +A+ + + A N + EA G+ + LD+A+ + P + + N
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198
Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
GV Y + + A EM++KAI P + A + +L
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 3e-65
Identities = 47/248 (18%), Positives = 93/248 (37%), Gaps = 11/248 (4%)
Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKN 263
++ + ++ P + G R GD E A + + + + I
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
N A L+ + ++ + +A+Y KAL + A A Y G Y + A +
Sbjct: 62 NFANLLSSVN-------ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
E A + LG + + A+ Q A+ + N +++ G+ +G
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
+D A +P +A+A+ N GV Y + A++ ++ + I PD A +
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234
Query: 444 LAMNYINE 451
L ++ +
Sbjct: 235 LLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 7e-60
Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 52/287 (18%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCG----ILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
+ + L P+ + + G + G +AAE++ KA+ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED------- 56
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI + L + + Y +AL++D A AYY G VY Y A +EK
Sbjct: 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A + + +G + + A+ +R + ++ N
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------------------- 157
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
+A + G+ D A+ + +P A+A
Sbjct: 158 ----------------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
N GV Y ++N +KA+E A+ I+P+ +L+ ++
Sbjct: 196 FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 1e-52
Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 7/224 (3%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ A + +E++ + +I L N A + +A+
Sbjct: 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL 84
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+LD A A+ G +Y + EA + + KAL A + LGT L
Sbjct: 85 ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVK 137
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
+ + A++++ + A + G+ + D AL + + P +A+A+
Sbjct: 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
N GV Y + + E A+ ++ + + P+ +A + +
Sbjct: 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-52
Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 3/202 (1%)
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+ S+ + + P + + GD + + KA+ N A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQ---QMGRGSEFGDYEKAAEAFTKAIEENKEDA 57
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
N + + + A+ FY+ A + A A G +Y ++ +A + ++ A
Sbjct: 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L LG V + A +++A+ N EA G+ + G +
Sbjct: 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177
Query: 421 AIDAYEQCLKIDPDSRNAGQNR 442
A+ + + DP +A N
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNA 199
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 14/197 (7%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFD 103
+DA+ Y AN+L S N+ ALA Y+ LE DS A+ G G A D
Sbjct: 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV--VKEMYKEAKD 112
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
F +A++ +N G + + A +A+ + +
Sbjct: 113 MFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-------TEARFQF 165
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
G L G + + ++ + DP +A A+YN GV Y+ + AL +KA +P
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Query: 224 YAEAYCNMGVIYKNRGD 240
+ A ++ +
Sbjct: 226 HMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 7/153 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N+ + + +A ++E L N + G L +LA AV+L+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ A G+ +EG L EA + DP + A + N +
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE-------NRE 210
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
++ +A+ I P + A + ++ +
Sbjct: 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 1e-65
Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 12/257 (4%)
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ + +++ G+V D K R +AY +G+ Y RG+ E A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+ L + P+ A +A+ + Y+KAL + A + N
Sbjct: 58 VPLRKALEIDPSSADAHAALAVVFQTEM-------EPKLADEEYRKALASDSRNARVLNN 110
Query: 306 LGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
G E +++ A P + NLG++ +A E ++ +L +
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170
Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
N + + + + A + + A + L + A
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 424 AYEQCLKIDPDSRNAGQ 440
Q ++ P S +
Sbjct: 231 YGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 1e-57
Identities = 43/261 (16%), Positives = 77/261 (29%), Gaps = 19/261 (7%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ + H G++ + ++ K LG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MGDQNPLKTDKGRDEA-------RDAYIQLGLGYLQR 50
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
GNT+ +AL+IDP A A+ L VV+ M+ A Y KA A N
Sbjct: 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110
Query: 231 MGVIYKNRGDLESAIACYERCLAVS--PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
G + E A + P N+ + + Q Y
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-------KKPAQAKEY 163
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
++K+L N + + + ++ A +Y+L A + + K +
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223
Query: 349 NLDKAVECYQMALSIKPNFSQ 369
+ D A + P +
Sbjct: 224 DRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 6e-45
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 16/215 (7%)
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
++ + L G GD N K DA LG+ Y + + A V
Sbjct: 8 HHHSSGLVPRG---SHMGDQN-----PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVP 59
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A +P A+A L V+++ A E Y+ AL+ ++ LNN G Q
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119
Query: 383 KMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+ + A + + +A P + + NLG++ + A + +E+ L+++ + +
Sbjct: 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179
Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQY 475
+A E + A R + F + Q
Sbjct: 180 E--MADLLYKER---EYVPA-RQYYDLFAQGGGQN 208
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 7e-41
Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 9/211 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
R A LE D + +AH + Q + +LA + + +A+ D +
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGN 172
NA + G ++ R EA + +A P + V +LG
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-------SRVFENLGLVSLQMKK 156
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ + ++L+++ + + + + +Y A Y+ A A +
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
+ K D ++A + + + P +
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 16/103 (15%), Positives = 25/103 (24%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ K A +E L + + L + A + + Q
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
NA + L K AA + P E A
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 4e-65
Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 15/272 (5%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALK----IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L L+ + + + + L D A Y GV+Y L A + +A
Sbjct: 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP E + +G+ G+ ++A ++ L + P + A N IAL G
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG----- 125
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF---YELAFHFNPHCAE 335
+ + L +A ++ + V +E +
Sbjct: 126 --RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 183
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
LG I ++ +++ S+ + S++ LG Y G +D+A + + A+
Sbjct: 184 VEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
A N + + G + +Q
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 3e-60
Identities = 43/277 (15%), Positives = 82/277 (29%), Gaps = 12/277 (4%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
++ + E L + D A +L + G G
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDER-------AQLLYERGVLYDSLGL 58
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ +AL I P + LG+ ++ +D A ++ P Y A+ N G
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ G + A PN + +A L K E +++K+
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK----QHFEKS 174
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
W + + LG E + H +E LG Y +LD
Sbjct: 175 DKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
A +++A++ + + ++ G+
Sbjct: 234 ATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 3e-57
Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 15/268 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIA 246
L V +Q + L E+ AL A+ GV+Y + G A
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
+ + LA+ P+ N + I LT G + + + L + Y A N
Sbjct: 65 DFSQALAIRPDMPEVFNYLGIYLTQAG-------NFDAAYEAFDSVLELDPTYNYAHLNR 117
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA---VECYQMALSI 363
G+A + +A + +P+ L + + D + ++ +
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177
Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
+ ++ LG + Q M+ + +E LG Y G + A
Sbjct: 178 QWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236
Query: 424 AYEQCLKIDPDSRNAGQNRLLAMNYINE 451
++ + + + + LL ++ + +
Sbjct: 237 LFKLAVANNVHNFVEHRYALLELSLLGQ 264
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-49
Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 50/314 (15%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDS 104
+ + A L+ + LA E +L D + +G+ + LA +
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND 65
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
FS+A+ + P + GI G A E++
Sbjct: 66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS----------------------- 102
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
L++DP Y A+ N G+ + A + P
Sbjct: 103 ------------------VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+ + + + + A ++ S + N + L ++ + +E
Sbjct: 145 PFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK-- 201
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
A H ++ + LG Y + D A ++LA N H +
Sbjct: 202 --ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 259
Query: 345 KDRDNLDKAVECYQ 358
+
Sbjct: 260 SLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 9e-44
Identities = 44/239 (18%), Positives = 79/239 (33%), Gaps = 16/239 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
+ S A + L E GI L G A+++F ++LD
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT--QAGNFDAAYEAFDSVLELD 107
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P AH + GI GR A + DP+ + L + L
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE-- 165
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + ++ K + + LG + E + +E +G
Sbjct: 166 --VLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLG 222
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
Y + GDL+SA A ++ +A + + + + L+ LG + + D+ A +
Sbjct: 223 KYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG---QDQDDL----AESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 3e-38
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 6/200 (3%)
Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320
+A+ L + E + + + A +Y GV Y + +A
Sbjct: 7 KSEVLAVPLQPTL---QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63
Query: 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
+ A P E N LG+ N D A E + L + P ++ + N G+
Sbjct: 64 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
G+ A + + +P L + + A + +Q + +
Sbjct: 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWN 182
Query: 441 NRLLAMNYINEGHDDKLFEA 460
+ I+E +
Sbjct: 183 IVEFYLGNISE--QTLMERL 200
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 11/92 (11%), Positives = 20/92 (21%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
Y + + A E + G A F AV
Sbjct: 183 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
+ N H + + G+ + +
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 7e-65
Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 9/261 (3%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
A G + + Q+D A+ Y KA N +G+ E+AI+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
+ ++ + +G + + KK + Y +
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG-------NAYHKLGDLKKTIEYYQKSLTE-HRTA 112
Query: 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
++ + + E + NP AE G Y + + AV+ Y + P
Sbjct: 113 DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
++ +N A KAI +P + AY + A++ +
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232
Query: 428 CLKIDPDSRNAGQNRLLAMNY 448
D + N R + Y
Sbjct: 233 ARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 5e-58
Identities = 38/298 (12%), Positives = 76/298 (25%), Gaps = 50/298 (16%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
A G + + EA E Y+KA
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKA------------------------------ 31
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
++ N E +Y+TA+ A + Y +
Sbjct: 32 -----------WELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ G+ + ++ + + A LT L + + + +
Sbjct: 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKL-------RNAEKELKKAEAE 131
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
Y N A+ G Y + A+ Y P A +N + +
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
A+ A+ PNF ++ + +A E ++ A + + +
Sbjct: 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 3e-49
Identities = 37/257 (14%), Positives = 68/257 (26%), Gaps = 20/257 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
N +F +A+ Y E ++ + G A + ++AV+
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEY--EKGEYETAISTLNDAVEQG 68
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
+ + + G K + A +LT L N
Sbjct: 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LTEHRTADILTKLR-------N 120
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ ++K ++P A G Y + A+ Y + P A Y N
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
AIA + + PNF A A A + + + A
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV-------KEYASALETLDAA 233
Query: 293 LYYNWHYADAMYNLGVA 309
+ + +
Sbjct: 234 RTKDAEVNNGSSAREID 250
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 6e-44
Identities = 25/219 (11%), Positives = 57/219 (26%), Gaps = 8/219 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + ++ A++ +E+ + + ++ +
Sbjct: 45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ H + + + +P A G +
Sbjct: 105 SLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEK-------AEEARLEGKEYFTKSDWP 156
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ ++ Y E +K P A Y N ++LM + A+ KA + P + AY
Sbjct: 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ SA+ + + I
Sbjct: 217 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 7e-31
Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 8/188 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ L + +E ++ H L ++P+
Sbjct: 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G Y + A ++Y + + P A L L +
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-------SFP 190
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ I +A++ DP++ AY + +Y +AL + A + +
Sbjct: 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 235 YKNRGDLE 242
+
Sbjct: 251 QLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
+ + G + + D A E KA + NN + G AI
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 425 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD 483
++ + R + + I + D K+ + Y + + T D
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG-----NAYHKLGDL-KKTIEYYQKSLTEHRTAD 113
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 8e-64
Identities = 40/400 (10%), Positives = 99/400 (24%), Gaps = 18/400 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
++ A+ ++ L + V A Q +
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P A G + + +A P A +
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASHDG 336
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + G L L +A P
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
A + G + ++ + + ++P+ +A + L + +
Sbjct: 397 VAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL-------ETVQRL 448
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ + A+ + + + A P A + +
Sbjct: 449 LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ + + A + P+ ++ + G + ++ +A P A
Sbjct: 509 ALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ G + ++ + Q + A + +
Sbjct: 569 ASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 1e-62
Identities = 41/400 (10%), Positives = 101/400 (25%), Gaps = 18/400 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
++ A+ ++ L + V A Q +
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P A + + +A P + + G
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIASHGG 302
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + L L +A P
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
A + G + ++ + + ++P+ +A+ G K L + +
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIASNGGKQAL-ETVQRL 414
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ +A A+ + + + P A + +
Sbjct: 415 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQ 474
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ + + + A + P+ ++ + + ++ +A P A
Sbjct: 475 ALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ G + ++ + Q + PD A +
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 574
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 5e-62
Identities = 42/406 (10%), Positives = 100/406 (24%), Gaps = 22/406 (5%)
Query: 45 GFEGKDALSYANILRSRNKFVDAL-----ALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ + A R ++A+ AL L V A Q +
Sbjct: 152 QLDTGQLVKIAK--RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQ 209
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+A L P A + + +A P +
Sbjct: 210 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ-------VVA 262
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+ + Q + +A + P A + G L L +A
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
P A + + ++ + + ++P+ +A + L
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL------- 375
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ + + +A A+ + G + + A P A +
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIAS 434
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
+ + + + + + P ++ + + ++ +A P
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A + + ++ + Q + PD A +
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 7e-62
Identities = 39/396 (9%), Positives = 97/396 (24%), Gaps = 14/396 (3%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
A++ ++ L + V A Q + +
Sbjct: 397 VAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTH 456
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
L P A + + + +A P + + +
Sbjct: 457 GLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ-------VVAIASNIGGKQA 509
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
Q + +A + P A + G L L +A P A
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 569
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ G + ++ + + ++ +A + L T +L +
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRL-------LPVL 622
Query: 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
+A A+ + + + A P A + G + +
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682
Query: 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
+ + + A + ++ + + ++ +A P A + G
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 742
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ ++ + Q + P A + +
Sbjct: 743 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGG 778
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 224 bits (571), Expect = 6e-61
Identities = 43/380 (11%), Positives = 103/380 (27%), Gaps = 15/380 (3%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
DA L L+ D+G + +G M+ + + L P A
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ + +A P+ + + + Q + +A
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ P A + L L +A P A + G + ++ +
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLL 314
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+ ++P+ +A + L T +L + +A A+ +
Sbjct: 315 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRL-------LPVLCQAHGLTPDQVVAIAS 367
Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
G + + A P A + G + + + + + A + P
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTP 426
Query: 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
+ ++ + + ++ + P A + + ++ +
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 426 EQCLKIDPDSRNAGQNRLLA 445
Q + PD A + +
Sbjct: 487 CQAHGLTPDQVVAIASNIGG 506
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 217 bits (553), Expect = 1e-58
Identities = 37/386 (9%), Positives = 94/386 (24%), Gaps = 14/386 (3%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S+ ++ L + V A Q + +A L
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P A + + +A P + + G +
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ-------VVAIASNGGGKQALET 546
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A + A +
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ ++ + + ++P +A + L + + + +A
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE-------TVQRLLPVLCQA 659
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + G + + A A + + + + +
Sbjct: 660 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ A + P+ ++ + G + ++ +A P A +
Sbjct: 720 LLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGK 779
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNA 438
+ ++ + Q + A
Sbjct: 780 QALETVQRLLPVLCQDHGLTLAQVVA 805
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 203 bits (517), Expect = 5e-54
Identities = 36/391 (9%), Positives = 92/391 (23%), Gaps = 14/391 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++ L + V A Q + +A L P
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G + + +A P A + G + Q
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASNGGGKQALETVQ 582
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A + A + L L +A P A +
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+ ++ + + ++P+ +A + L + + + +A
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE-------TVQRLLPVLCQAHG 695
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
A+ + + + A P A + G + + + + +
Sbjct: 696 LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 755
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
A + P ++ + + ++ + A + +
Sbjct: 756 PVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQA 815
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
++ + Q + D A + +
Sbjct: 816 LETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 9e-50
Identities = 43/370 (11%), Positives = 97/370 (26%), Gaps = 17/370 (4%)
Query: 83 EAHIGKG-----ICLQMQNMGRLAF--DSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135
EA +G G I Q+ L ++ + P+ R +EA
Sbjct: 79 EALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEA 138
Query: 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195
+ L P + + I G + L + P A
Sbjct: 139 LLTDAGELRGPPLQLDTGQLVKI--AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIA 196
Query: 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
+ L L +A P A + + ++ + + +
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP 256
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
P+ +A + L + + + +A A+ + G +
Sbjct: 257 PDQVVAIASNIGGKQALE-------TVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET 309
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
+ A P A + + + + + + A + P+ ++ + G
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369
Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
+ ++ +A P A + G + ++ + Q + PD
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG-KQALETVQRLLPVLCQAHGLTPDQ 428
Query: 436 RNAGQNRLLA 445
A +
Sbjct: 429 VVAIASHDGG 438
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 1e-49
Identities = 37/380 (9%), Positives = 88/380 (23%), Gaps = 14/380 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++ L + V A G Q + +A L P
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G + + +A A L T Q
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALET-------VQ 616
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A + P A + L L +A P A + G
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 676
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+ ++ + + ++ +A + L + + + +A
Sbjct: 677 KQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE-------TVQRLLPVLCQAHG 729
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
A+ + G + + A P A + + + + + +
Sbjct: 730 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ ++ + + ++ +A A + +
Sbjct: 790 PVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQA 849
Query: 415 AGSISLAIDAYEQCLKIDPD 434
++ + Q + PD
Sbjct: 850 LETVQRLLPVLCQDHGLTPD 869
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 1e-46
Identities = 32/390 (8%), Positives = 90/390 (23%), Gaps = 14/390 (3%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S ++ L + V A G Q + +A L
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 595
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
A + + +A P+ + + +
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALET 648
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A A +
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ ++ + + ++P+ +A + L + + + +A
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE-------TVQRLLPVLCQA 761
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + + + A + + + + +
Sbjct: 762 HGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQR 821
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ A + + ++ + + ++ + P A +
Sbjct: 822 LLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGK 881
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ ++ + Q + D A +
Sbjct: 882 QALETVQRLLPVLCQDHGLTLDQVVAIASN 911
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 7e-38
Identities = 32/338 (9%), Positives = 80/338 (23%), Gaps = 13/338 (3%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYH-KALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
Q + A + + G + E K S + A + +
Sbjct: 41 QPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAA 100
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Y + P + AL P+ + +
Sbjct: 101 LGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK 160
Query: 233 VIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
+ + A+ L +P +A + L + + +
Sbjct: 161 IAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALE-------TVQRLLP 213
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
+A A+ + + + A P A + +
Sbjct: 214 VLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
+ + + + A + P+ ++ + G + ++ +A P A +
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ ++ + Q + PD A +
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 371
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-36
Identities = 46/430 (10%), Positives = 105/430 (24%), Gaps = 48/430 (11%)
Query: 45 GFEGKDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLA 101
G ++ A+ ++ L + V A G Q +
Sbjct: 627 GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686
Query: 102 FDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
+A L + A + + +A P + +
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIA 739
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT------------ 209
G + Q + +A + P A + L
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799
Query: 210 ---------------ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254
AL ++ + V + + A+ +R L V
Sbjct: 800 LAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPV 859
Query: 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 314
+ +A+ + + + + + A+ + G +
Sbjct: 860 LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQALE 918
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ P A + + + + + + + PN ++ +
Sbjct: 919 TVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASN 978
Query: 375 GVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
G ++ + A + A+AA + A LG A+DA ++ L P
Sbjct: 979 GGKQALE-SIVAQLSRPDPALAALTNDHLVALACLGGRP--------AMDAVKKGLPHAP 1029
Query: 434 DSRNAGQNRL 443
+ R+
Sbjct: 1030 ELIRRVNRRI 1039
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 1e-63
Identities = 41/268 (15%), Positives = 76/268 (28%), Gaps = 21/268 (7%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG---CYEKAAL 219
L N + I+ + + + Y V Y EL +YD A Y
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ + G I +G AI Y+ + + + G
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG------ 122
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ + Y +K + Y LG AY ++ A + P+
Sbjct: 123 -NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181
Query: 340 LGVIYKDRDNLDK---AVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAA 388
+D K A Y+ + + K ++ + YT+ A
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+ +A +PT +A + L +
Sbjct: 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 2e-60
Identities = 43/275 (15%), Positives = 74/275 (26%), Gaps = 21/275 (7%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA---CYE 249
+ + Y A+ + K ++ Y V Y + A Y
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
+ + L G + + Y+ A+ + D +G
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKG-------QDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
+ F +AI + E + LG Y KA + L +KPN
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 370 SLNNLGVVYTVQG---KMDAAAEMIEKAI--------AANPTYAEAYNNLGVLYRDAGSI 418
Q K A EK I EA + Y
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
A A++ L +DP ++ A + + + + H
Sbjct: 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 3e-57
Identities = 44/306 (14%), Positives = 86/306 (28%), Gaps = 40/306 (13%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA---AE 137
N + L N A + F++ + + + Y + + A E
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
+Y ++A + + G L G IQ+Y A+ D Y +
Sbjct: 62 TYFSKVNATKAK-------SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
G + + A+ EK + + +G Y + A + + + L + PN
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317
I A A K YY+K +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAK----PYYEKLIEVCAPGGAK--------------- 215
Query: 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
+ EA + Y + KA ++ L++ P ++++ L +
Sbjct: 216 -----------YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264
Query: 378 YTVQGK 383
Sbjct: 265 LEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 187 bits (478), Expect = 6e-54
Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 8/233 (3%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
M + + AI + + A N N A+ +L + DI
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
Y + + G + + +AI Y+ A + + +G
Sbjct: 61 ET----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
+ ++ N A++ + + + LG Y + A K + P
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176
Query: 403 EAYNNLGVLYRDAGSIS---LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
Y + LA YE+ +++ ++ L
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE-LIEANEYIA 228
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-41
Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 21/233 (9%)
Query: 55 ANILRSRNKFVDALA---LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
A K+ A Y + G L + LA + AV
Sbjct: 44 AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
D + G + ++G A + K + + V +LG +
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-------PKVFYELGQAYYYNK 156
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA--------ALE 220
+ + L++ P+ Y + + A YEK A
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ EA + Y D A A ++ LA+ P + A + + + L
Sbjct: 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 7e-23
Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 4/157 (2%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ ++ F A+ E + + + + G A SF + ++L P
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 115 NACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAE-CLAIVLTDLGTSLKLA 170
+ + + A Y K + + L + +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
+ + L +DP A L + +
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 4e-62
Identities = 62/406 (15%), Positives = 118/406 (29%), Gaps = 52/406 (12%)
Query: 54 YANILRSRNKFVDALALYEIVLE--------KDSGNVEAHIGKGICLQMQNMGRL--AFD 103
YA + + D + V + E +G + A
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 104 SFSEAVKLDPQNACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
F +A++ P+N + I + A + +A+ +P + LA+ L
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
+ + +G + EAL+ P + Y + D A+ +KA
Sbjct: 220 HKMR---EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
P A +C +G Y+ + V E KL
Sbjct: 277 IPNNAYLHCQIGCCYRAKV------------FQVMNLRENGMYGKR----------KLLE 314
Query: 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--- 337
I VA+ KKA N + L + +++ A +++ F
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Query: 338 NNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
G DKA+ + + I + D ++ + ++
Sbjct: 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLS 424
Query: 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
N +EA + L L + A + E+ L+ +A
Sbjct: 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 4e-55
Identities = 44/353 (12%), Positives = 100/353 (28%), Gaps = 52/353 (14%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGI---CLQMQNMGRLAFDSFSEA 108
+ + N+ A +E LEK N E G I L + A D +A
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201
Query: 109 VKLDPQNACAHTHCGI----LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
++L+P N + + ++ E + +AL P VL
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV-------TDVLRSAA 254
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM------------------- 205
+ I+ +AL+ P+ A + +G Y +
Sbjct: 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--- 262
A+ +KA + ++ E A +++ + +
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
++ + ++ + + N + + ++
Sbjct: 375 LRYGNFQLYQM------KCEDKAIHHFIEGVKINQKSREK-EKMKDKLQKI--------- 418
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
++ N +EA + L + + + + +A E + L + + G
Sbjct: 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 7e-54
Identities = 54/373 (14%), Positives = 95/373 (25%), Gaps = 71/373 (19%)
Query: 103 DSFSEAVKLDPQNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
D + + A L +G+ A E KA
Sbjct: 36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------- 88
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
+ + N VY + + +K
Sbjct: 89 -------------------------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123
Query: 221 RPMYA--------EAYCNMG--VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
++ E C G + E A C+E+ L P + +AIA
Sbjct: 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF----DMAIVFYELA 326
L + I+ ++A+ N L + +M + E A
Sbjct: 184 RLDNWPPSQNAID----PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239
Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P + + Y+ +D DKA+E + AL PN + +G Y +
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299
Query: 387 -------------------AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
A ++KA AN + L L+ A A +++
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359
Query: 428 CLKIDPDSRNAGQ 440
+
Sbjct: 360 EFSKELTPVAKQL 372
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 172 bits (436), Expect = 3e-46
Identities = 47/335 (14%), Positives = 90/335 (26%), Gaps = 52/335 (15%)
Query: 167 LKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
++ + D K + + A L + Q + AL C KA
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 218 --ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--------NNMAI 267
+ N +Y + G L ++ V F
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVFYE 324
G + ++KAL + L +A AI
Sbjct: 145 TRLKCGGN-----QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199
Query: 325 LAFHFNPHCAEACNNLGVIY----KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
A NP L + ++ + + + + AL P + L + Y
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-------------------ISLA 421
+ + D A E+++KA+ P A + +G YR I A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319
Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
+ ++ + + + LA + ++
Sbjct: 320 VAHLKKADEANDNLFRVCSI--LASLHALADQYEE 352
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 2e-61
Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 5/211 (2%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
LGV L +YD AL +E+A E P EA + G + A+ + +
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66
Query: 253 AVSPNFEIAKNNMAIALTDLG----TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 308
A +P + ++ A L + + +G + Q ++ K A N YA G+
Sbjct: 67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126
Query: 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368
Y + + D A + A E + L +Y LD+A+ Y AL P
Sbjct: 127 VYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
++GK + AA +
Sbjct: 186 DLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 1e-51
Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 12/222 (5%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
+ + G+ L A F A+K +PQ+ A G + A E+
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 141 KALSADPSYKPAAECLAIVLTDLG----TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
++ P Y L+ L + G + + +A +++P YAP +
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123
Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
G+VY+ L + D A ++ AL E + +Y + G L+ A+A Y + L +P
Sbjct: 124 RGLVYALLGERDKAEASLKQ-ALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182
Query: 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
+ A AL G + +++ H
Sbjct: 183 KDLDLRVRYASALLLK-------GKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 3e-39
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
LGV + ++D A+ +E A NP EA L ++ A+E +
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 360 ALSIKPNFSQSLNNLGVVYT-----------VQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
++ P + L Y +G ++ A +++ A NP YA +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPD 434
G++Y G A + +Q L ++
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDT 150
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
+ LGV D A+ ++ AL P ++L L G ++ A E +
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISL-----------AIDAYEQCLKIDPDSRNAGQNR 442
+A P Y Y L Y + A+ + +++P R
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 7e-18
Identities = 18/78 (23%), Positives = 29/78 (37%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
Q+ LGV G+ DAA + E+A+ NP EA L G ++ A++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 425 YEQCLKIDPDSRNAGQNR 442
+ + P
Sbjct: 62 GKTLVARTPRYLGGYMVL 79
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 8e-59
Identities = 71/373 (19%), Positives = 127/373 (34%), Gaps = 55/373 (14%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKL 169
L ++ + + + G S+ S ++ CL L G L
Sbjct: 3 LGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLE--LALEGERLCN 60
Query: 170 AGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----- 220
AG+ + G+ + A++ + Y LG Y L Y+ A+ ++ L
Sbjct: 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD-LTLAKSM 119
Query: 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF----EIAK--NNMAIALTDL 272
R A++ N+G K G + A C ER L ++ + N+
Sbjct: 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179
Query: 273 G----------TKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKF 316
G ++ + + V +Y++ L A NLG Y + F
Sbjct: 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239
Query: 317 DMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------K 364
AI ++ F A +NLG + + A E Y+ L++ +
Sbjct: 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAYNNLGVLYRDAGSI 418
+QS +LG YT+ + + A E + + A A +LG + G
Sbjct: 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359
Query: 419 SLAIDAYEQCLKI 431
A+ EQ L++
Sbjct: 360 ERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 2e-52
Identities = 58/354 (16%), Positives = 106/354 (29%), Gaps = 75/354 (21%)
Query: 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---- 220
G+ G + + G + ++ A ++
Sbjct: 22 GSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAA-IQAGTE 80
Query: 221 -RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE----IAK--NNMAIALTDLG 273
+ Y +G Y GD A+ ++ L ++ + AK N+ L +G
Sbjct: 81 DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140
Query: 274 TKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEM-------------- 313
++ ++ L A+YNLG Y
Sbjct: 141 -------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193
Query: 314 ---LKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI- 363
A+ FY+ AC NLG Y + A+E +Q L I
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253
Query: 364 -----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAYNNLGVLY 412
+ ++ +NLG + G+ + AAE ++ + A++ +LG Y
Sbjct: 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY 313
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
+ AI+ + + L I ++ G A + L AH G
Sbjct: 314 TLLHEFNTAIEYHNRHLAI---AQELGDRIGEARACWS------LGNAHSAIGG 358
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 7e-20
Identities = 53/251 (21%), Positives = 85/251 (33%), Gaps = 49/251 (19%)
Query: 51 ALSYANI---LRSRNKFVDALALYEIVLE-----KDS----------GNVEAHIGK-GIC 91
A S N+ L+ +F +A E L D GNV GK
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185
Query: 92 LQMQNMGRLAFDSFSEAV-----------KLDPQNACAHTHC--GILYKDEGRLVEAAES 138
G ++ + AV L + A G Y G A E
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245
Query: 139 YHKALSADPSYK-PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYA 191
+ + L + AAE ++LG S G +D + Y L + A
Sbjct: 246 HQERLRIAREFGDRAAE--RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303
Query: 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYCNMGVIYKNRGDLESA 244
+ Y+LG Y+ L +++TA+ + + L R A A ++G + G E A
Sbjct: 304 QSCYSLGNTYTLLHEFNTAIEYHNRH-LAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362
Query: 245 IACYERCLAVS 255
+ E+ L ++
Sbjct: 363 LKYAEQHLQLA 373
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 3e-55
Identities = 70/333 (21%), Positives = 115/333 (34%), Gaps = 55/333 (16%)
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY 207
+A CL L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 2 SASCLE--LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 208 DTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-- 259
AL + ++ A+A N+G K G+ + AI C +R L +S
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 260 --IAK--NNMAIALTDLGTKVKLEGDINQGVAY------YKKAL-YYN------------ 296
A+ N+ G G + G + A+ Y
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR 179
Query: 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNL 350
A NLG + + F A++ +E F A +NLG Y
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239
Query: 351 DKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAAN 398
+ A E Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
A +LG Y G+ A+ E+ L+I
Sbjct: 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-40
Identities = 49/283 (17%), Positives = 92/283 (32%), Gaps = 42/283 (14%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRGDLESAI 245
G + + +E A ++ + Y +G Y D A+
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAA-VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWHY 299
+ L ++ + A A +LG +K+ G+ ++ + ++ L
Sbjct: 64 EYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A A+YNLG Y K + R+ L AV+ Y+
Sbjct: 123 ARALYNLGNVYHAKGKSFGCPGPQ--------------DTGEFPEDVRNALQAAVDLYEE 168
Query: 360 ALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNN 407
LS+ + ++ NLG + + G A E+ + AY+N
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
LG Y G A + Y++ L + +R + A + +
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLL---ARQLKDRAVEAQSCYS 268
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-38
Identities = 70/337 (20%), Positives = 114/337 (33%), Gaps = 63/337 (18%)
Query: 87 GKGICLQMQNMGRL---------AFDSFSEAVKLDPQN----ACAHTHCGILYKDEGRLV 133
G CL++ G F AV++ ++ + ++ G Y
Sbjct: 1 GSASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60
Query: 134 EAAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---- 187
+A E +H L+ + + A +LG +LK+ GN + I L I
Sbjct: 61 KALEYHHHDLTLARTIGDQLG---EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117
Query: 188 --PHYAPAYYNLGVVYSEL--------------------MQYDTALGCYEKA------AL 219
A A YNLG VY A+ YE+
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+R A+ N+G + G+ A+ +E+ L ++ F K A ++LG
Sbjct: 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFL 236
Query: 280 GDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------F 327
G+ YYKK L A + Y+LG Y + ++ AI ++
Sbjct: 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
AC +LG Y N D+A+ + L I
Sbjct: 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 9e-24
Identities = 55/268 (20%), Positives = 102/268 (38%), Gaps = 45/268 (16%)
Query: 51 ALSYANI---LRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
A + N+ L+ F +A+ + L+ ++ + +G+ L N+G +
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALY--NLGNVYHA-- 135
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH-KALSADPSYKPAAECLAIVLTDLG 164
K G +D ++AA + + LS + A +LG
Sbjct: 136 ----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA-QGRAFGNLG 190
Query: 165 TSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
+ L GN +D + + + L I AY NLG Y L +++TA Y+K
Sbjct: 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT- 249
Query: 219 LE-------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF----EIAK--NNM 265
L R + A++ ++G Y D E AI + + LA++ + ++
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
A T L G+ +Q + + +K L
Sbjct: 310 GNAYTAL-------GNHDQAMHFAEKHL 330
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 186 bits (476), Expect = 1e-54
Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 44/227 (19%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D Y + G+ +++ +Y A+ E+ + ++G+ Y G ++
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
ER LA +P+ L
Sbjct: 64 LLERSLADAPD-----------------------------------------NVKVATVL 82
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+ Y ++ K+D+A+ NP LGV + D+A++ +++AL ++PN
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+ + Y G+ + A +KA + + L ++ R
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE---LALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-52
Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 7/183 (3%)
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
++ + I+ G +Q V ++ + D +LG+AY +
Sbjct: 5 DIRQVYYRDKGISHAKAG-------RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA 57
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
D E + P + LG+ Y D AV P LG
Sbjct: 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117
Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
V G+ D A + + A+ P + + + Y G A+ +++ ++D +
Sbjct: 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177
Query: 436 RNA 438
Sbjct: 178 SVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 169 bits (432), Expect = 1e-48
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 44/216 (20%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
G S AG + + D +LG+ Y + D E++ + P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
+ +G+ Y + A+ + +P
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------------------------- 108
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
+ + LGVA + +FD AI +++A P+ + +
Sbjct: 109 ----------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
Y+ ++A+ ++ A + S L +V
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGASV---ELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-43
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 7/179 (3%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
+ KGI A + D + H GI Y G + E ++
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+ P V T LG + + + + +P + LGV
Sbjct: 69 LADAPDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
L ++D A+ ++ A RP + + + Y+ G E A+ +++ + +
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-43
Identities = 29/145 (20%), Positives = 60/145 (41%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ G+++ + ++ A++ E + + + +LG+ Y +D+ E
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
+ +L+ P+ + LG+ Y K D A ++ K ANP LGV + G
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNR 442
AID+++ L + P+ +
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAI 150
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-32
Identities = 19/109 (17%), Positives = 40/109 (36%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
+ + G+ + +AV + +LG+ Y G +D E
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
++E+++A P + LG+ Y LA+ + + +P + N
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-17
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
K+ A+ L V E + N G+ L N+GR A DSF A+ L P
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD--NLGRFDEAIDSFKIALGLRP 141
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
H Y+ GR EA + KA D + LA+V
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA---SVELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 4e-07
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ + Y + G+ + AG S A+ EQ D + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHL 48
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 3e-51
Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 10/226 (4%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
+ L + Y Y A E A P A+ IY+ + A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--YYNWHYADAMYN 305
+ + L++ P+ NN L + +AY+ KAL A N
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCG------RLNRPAESMAYFDKALADPTYPTPYIANLN 118
Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
G+ + +F +A + + + P A L L A ++ S
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411
LG + + + A E + + VL
Sbjct: 179 VLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-50
Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 12/233 (5%)
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
A + + + + Y D A A E L P E+A A L
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK---- 56
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVA-YGEMLKFDMAIVFYE--LAFHFNPHCA 334
++ +++AL A+ N G G + + ++ +++ LA P
Sbjct: 57 ---VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY 113
Query: 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394
A N G+ + A + +L+ +P F + L + G++ A +K
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ LG ++ A ++ A AYE ++ + + + + +
Sbjct: 174 QSRVEVLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTG 224
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 3e-40
Identities = 40/240 (16%), Positives = 80/240 (33%), Gaps = 19/240 (7%)
Query: 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135
EK + + R A S +A+K DP+N A +Y+ +A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-AGNTQDGIQKYYEALK--IDPHYAP 192
ES+ +ALS P A + + G L + + + +AL P
Sbjct: 62 QESFRQALSIKPDS-------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI 114
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
A N G+ ++ Q+ A +++ +P + A+ + G L A +++
Sbjct: 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ + + K+ + A Y+ ++ + V G+
Sbjct: 175 SRVEVLQADDLLLGW---------KIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ 225
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-35
Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 8/214 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + A A E L+ D N A + + Q + A +SF +A+ + P
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 115 NACAHTHCGI-LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+A + + G L R E+ + KAL ADP+Y + G G
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDKAL-ADPTYPTPYI----ANLNKGICSAKQGQF 129
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+L P + PA+ L Q A ++K + +G
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG- 188
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+K L +A A YE + NF ++ +
Sbjct: 189 -WKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 6e-51
Identities = 69/373 (18%), Positives = 125/373 (33%), Gaps = 69/373 (18%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G G + A+ + L+ + + LG + + ++ ++
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72
Query: 183 ALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYC 229
L + A A NLG L +D A+ C ++ L+ + A A
Sbjct: 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALY 131
Query: 230 NMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAKNNMAIAL 269
N+G +Y +G L++A+ YE L++ + A
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAF 190
Query: 270 TDLGTKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
+LG L G+ V +++ L A NLG AY + +F+ A +Y
Sbjct: 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250
Query: 324 ELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSL 371
+ A++C +LG Y + +KA++ + L+I + ++
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIA-------------ANPTYAEAYNNLGVLYRDAGSI 418
+LG YT G D A EK + A ++ LG+ Y SI
Sbjct: 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370
Query: 419 SLAIDAYEQCLKI 431
+ L
Sbjct: 371 MSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 8e-30
Identities = 61/320 (19%), Positives = 99/320 (30%), Gaps = 96/320 (30%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALG 212
+ L G L +G+ + G+ + A+++ + Y LG Y L Y AL
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 213 CYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+ ++ A+A N+G K G+ + AI C +R L +S
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS----------- 117
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
+ L A A+YNLG Y K ++
Sbjct: 118 ------------------------RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153
Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
+ RD L AV+ Y+ LS+
Sbjct: 154 --------------EFPEEVRDALQAAVDFYEENLSLV---------------------- 177
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
A+ A+ NLG + G+ A+ A+EQ L I ++ G
Sbjct: 178 ------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI---AKEFGDKAAERR 228
Query: 447 NYINEGHDDKLFEAHRDWGK 466
Y N G+ A+ G+
Sbjct: 229 AYSNLGN------AYIFLGE 242
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 1e-49
Identities = 56/136 (41%), Positives = 79/136 (58%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL + P +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 420 LAIDAYEQCLKIDPDS 435
AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 8e-42
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AEA+ N+G Y +GD + AI Y++ L + P A N+ A G D ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-------DYDE 53
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ YY+KAL + A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 345 KDRDNLDKAVECYQMALSIKPN 366
+ + D+A+E YQ AL + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 1e-35
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
AEA+ N+G Y +GD + AI Y++ L + P A N+ A GD
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-------GDY 119
Query: 283 NQGVAYYKKALYYN 296
++ + YY+KAL +
Sbjct: 120 DEAIEYYQKALELD 133
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-35
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL DP A +LG + G+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDE 53
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 236 KNRGDLESAIACYERCLAVSPN 257
+GD + AI Y++ L + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 91.7 bits (229), Expect = 6e-22
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 41/162 (25%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP++
Sbjct: 9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------------------- 97
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+DP A A+YNLG Y + YD A+ Y+KA
Sbjct: 98 ----------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 80.5 bits (200), Expect = 4e-18
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 34/105 (32%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AEA NLG Y + + D+A+E YQ AL + P
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------------------- 33
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
AEA+ NLG Y G AI+ Y++ L++DP S A
Sbjct: 34 -------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.5 bits (117), Expect = 7e-07
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
AEA+ NLG Y G AI+ Y++ L++DP S A N
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 41
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 41.2 bits (98), Expect = 2e-04
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP+
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Query: 115 N 115
+
Sbjct: 136 S 136
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 180 bits (457), Expect = 6e-49
Identities = 58/338 (17%), Positives = 107/338 (31%), Gaps = 26/338 (7%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECL------AIVLTDLGTSLKLAGNTQDGIQK---- 179
GR A+ +A + + L + + + + Q+ ++K
Sbjct: 31 GRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQ 90
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNR 238
E L A A G + Y A KA P EA+ +G +Y +
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE--GDINQGVAYYKKALYYN 296
GD+ SA C+ L N + N+++ L L T E + V K A+ +
Sbjct: 151 GDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209
Query: 297 WHYADAMYNLGVAYGEML--------KFDMAIVFYELAFHFN---PHCAEACNNLGVIYK 345
+ Y LG AY + A+ Y A + + N ++K
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
++ +A+E + A ++ P + + + ++ + E K
Sbjct: 270 YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGS 329
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSR-NAGQNR 442
L + + L++ P S G N
Sbjct: 330 LRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNS 367
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-46
Identities = 53/342 (15%), Positives = 110/342 (32%), Gaps = 28/342 (8%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKL 111
+ + + L E VL +A + KG L + A S+AVKL
Sbjct: 73 AGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL 132
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG--TSLKL 169
+P+ A G +Y +G + A + AL+ + + + L++VL L + +
Sbjct: 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEH 191
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY--------SELMQYDTALGCYEKAA--- 218
+ + D +++ A+++D ++Y LG Y AL Y +A
Sbjct: 192 SRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+ + + N ++K A+ + + A+ P + + L L
Sbjct: 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL------ 305
Query: 279 EGDINQGVAYYKK------ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332
+ + K + G + + + P
Sbjct: 306 -SRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPG 364
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
LG + +K + + S P ++ + N+
Sbjct: 365 VNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNV 406
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 1e-43
Identities = 40/332 (12%), Positives = 91/332 (27%), Gaps = 39/332 (11%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-------QYDTALG 212
+ + +QK + + +Y+ V + + L
Sbjct: 30 MGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQ 89
Query: 213 CYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKNNMAIALTD 271
E+ + A+A G D A + + + P A N +
Sbjct: 90 QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---------LKFDMAIVF 322
GD+ + AL + + ++ NL + ++ ++
Sbjct: 150 K-------GDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 323 YELAFHFNPHCAEACNNLGVIY--------KDRDNLDKAVECYQMALSIK---PNFSQSL 371
+LA + + LG Y ++ +A+ Y A + +
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
N ++ + A E +A A +P + E L ++ +++ K
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG---KT 318
Query: 432 DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463
P + L + G + +
Sbjct: 319 KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQK 350
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 4/184 (2%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
Y N ++ AL+ Y + K S N + H+ + + + A + FS+
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
A LDP L + RL ES K L G
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK-TKPKKLQSMLGSLRPAHLGPCGDGR 342
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + Q + + P LG V L + + + P YA
Sbjct: 343 YQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVM 402
Query: 228 YCNM 231
N+
Sbjct: 403 VYNV 406
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 1e-44
Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 26/213 (12%)
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
+ G A++ + + +A++ +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY--------------------- 41
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
Y+ + + L +AY + +D A +FY+ P+ + +
Sbjct: 42 ----YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIEKAIAANPTYA 402
R A+ Y+ L ++ + + LG Y + + E K +++
Sbjct: 98 QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157
Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
A G+ A ++ ++ + P +
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 6e-38
Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 32/239 (13%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
Q+ + G+ +A + + ++ +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM--------------------- 40
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ K + L + Y + YD A Y++ + P +
Sbjct: 41 ----YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ RG + A+ YE+ L + + A + + + K L
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA------EQEKKKLETDYKKL 150
Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A Y G++ +++ A + P EA L I + +++
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 9e-33
Identities = 31/175 (17%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA----------------CNNLGV 342
D M A E + A+ ++ N E L +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
YK N DKA Y+ L PN L + +G+ A M EK +
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 403 EAYNNLGVLYRDAG-SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
A LG Y ++ + L + A ++ + +K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR--DGLSKLFTTRYEK 175
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-30
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 23/207 (11%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK----------------GICLQMQ 95
L + + A++ + + + E + + +
Sbjct: 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67
Query: 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A+ + E ++ P N C + G+ +A Y K L + A
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
L K ++ Y+ L A Y G+ +Y+ A +
Sbjct: 128 LGNYYYLTAEQEKKK------LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLE 242
K L P EA + I + ++
Sbjct: 182 KVILRFP-STEAQKTLDKILRIEKEVN 207
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 3e-40
Identities = 53/316 (16%), Positives = 94/316 (29%), Gaps = 70/316 (22%)
Query: 177 IQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--ALER- 221
+ ++ P +NL + Y+ +Y+ A+ ++A LE+
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
Query: 222 -----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIA 268
P A + ++Y+++ + A LA+ P NN+A+
Sbjct: 61 SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120
Query: 269 LTDLGTKVKLEGDINQGVAYYKKAL------YYNWH--YADAMYNLGVAYGEMLKFDMAI 320
G + K+AL H A + NL + K++
Sbjct: 121 YGKRG-------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173
Query: 321 VFYELAF----------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------ 364
+Y+ A P+ A+ NNL Y + +A Y+ L+
Sbjct: 174 YYYQRALEIYQTKLGPDD--PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231
Query: 365 ---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDA 415
+ +GK E +PT NLG LYR
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ 291
Query: 416 GSISLAIDAYEQCLKI 431
G A E ++
Sbjct: 292 GKFEAAETLEEAAMRS 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 3e-35
Identities = 57/320 (17%), Positives = 96/320 (30%), Gaps = 62/320 (19%)
Query: 125 LYKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
++ Y + + P+ L +L G + + +A
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPA-------RLRTLHNLVIQYASQGRYEVAVPLCKQA 53
Query: 184 LKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER-------PMYAEA 227
L+ P A L +VY + +Y A A A+ P A
Sbjct: 54 LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIALTDLGTKVKLE 279
N+ V+Y RG + A +R L + P+ NN+A+ + G
Sbjct: 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG------ 167
Query: 280 GDINQGVAYYKKAL------YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF---- 327
+ YY++AL A NL Y + KF A Y+
Sbjct: 168 -KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
Query: 328 -----HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGV 376
+ + + + + K P + +L NLG
Sbjct: 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286
Query: 377 VYTVQGKMDAAAEMIEKAIA 396
+Y QGK +AA + E A+
Sbjct: 287 LYRRQGKFEAAETLEEAAMR 306
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 55/289 (19%), Positives = 87/289 (30%), Gaps = 61/289 (21%)
Query: 123 GILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
I Y +GR A +AL P +A +L L + +
Sbjct: 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-------VATMLNILALVYRDQNKYK 86
Query: 175 DGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------AL- 219
D +AL I P A NL V+Y + +Y A ++A L
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146
Query: 220 -ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIALT 270
+ P A+ N+ ++ +N+G E Y+R L + PN KNN+A
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNW---------HYADAMYNLGVAYGEMLKFDMAIV 321
G Q YK+ L + K
Sbjct: 207 KQG-------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259
Query: 322 FYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
F E + P NLG +Y+ + + A + A+ +
Sbjct: 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 142 bits (362), Expect = 4e-40
Identities = 49/118 (41%), Positives = 68/118 (57%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
AL + PN +++ NLG Y QG D A E +KA+ +P AEA NLG + G
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-36
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 41/166 (24%)
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A++ AEA+ N+G Y +GD + AI Y++ L + PN
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------------- 41
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
A+A YNLG AY + +D AI +Y+ A +P+ AEA
Sbjct: 42 ----------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 3e-35
Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
I Y++ L + PN A N+ A G + I YY+KAL + + A+A
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQG---DYDEAI----EYYQKALELDPNNAEAKQ 115
Query: 305 NLGVAYGEM 313
NLG A +
Sbjct: 116 NLGNAKQKQ 124
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-35
Identities = 45/109 (41%), Positives = 64/109 (58%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
A+ +P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-34
Identities = 42/111 (37%), Positives = 62/111 (55%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 41/159 (25%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
+ EA G Q A + + +A++LDP NA A + G Y +G EA E Y
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
KAL +DP+ A A+YNLG
Sbjct: 68 KALE-----------------------------------------LDPNNAEAWYNLGNA 86
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Y + YD A+ Y+KA P AEA N+G + +G
Sbjct: 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 87.1 bits (217), Expect = 2e-20
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 362 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 421 AIDAYEQCLKIDPDSRNA 438
AI+ Y++ L++DP++ A
Sbjct: 62 AIEYYQKALELDPNNAEA 79
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 75.1 bits (186), Expect = 3e-16
Identities = 36/151 (23%), Positives = 51/151 (33%), Gaps = 45/151 (29%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
N + + +A+ Y+ LE D N EA G G A + + +A++LDP
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY--KQGDYDEAIEYYQKALELDP 74
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
NA A + G Y +G EA E Y KAL
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----------------------------- 105
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
+DP+ A A NLG +
Sbjct: 106 ------------LDPNNAEAKQNLGNAKQKQ 124
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 7e-35
Identities = 48/288 (16%), Positives = 88/288 (30%), Gaps = 58/288 (20%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKA--ALER------PMYAEAYCNMGVIYKNRGDLESA 244
+ ++ S L+ +A+ ++A LE+ P A + ++Y+++ + A
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62
Query: 245 IACYERCLAVS--------PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--- 293
LA+ P NN+A+ G + K+AL
Sbjct: 63 AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-------KYKEAEPLCKRALEIR 115
Query: 294 ---YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF----------HFNPHCAEACN 338
+H A + NL + K + +Y A P+ A+ N
Sbjct: 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNVAKTKN 173
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIK---------PNFSQSLNNLGVVYTVQGKMDAAAE 389
NL Y + A Y+ L+ + + + K +A
Sbjct: 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233
Query: 390 MIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
E +PT +LG LYR G + A + +
Sbjct: 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 3e-34
Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 62/288 (21%)
Query: 163 LGTSLKLA------GNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYD 208
+G+S + +AL+ P A L +VY + +Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60
Query: 209 TALGCYEKAALER---------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS---- 255
A A L P A N+ V+Y RG + A +R L +
Sbjct: 61 EAAHLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119
Query: 256 ----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAM 303
P+ NN+A+ + G + YY++AL + A
Sbjct: 120 GKFHPDVAKQLNNLALLCQNQG-------KAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172
Query: 304 YNLGVAYGEMLKFDMAIVFYELAFHF---------NPHCAEACNNLGVIYKDRDNLDKAV 354
NL Y + K+ A Y+ N + + +D +
Sbjct: 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232
Query: 355 ECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
+ K P + +L +LG +Y QGK++AA + + A
Sbjct: 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-28
Identities = 51/295 (17%), Positives = 82/295 (27%), Gaps = 64/295 (21%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTDLGTSLKL 169
+H H A +AL P A +L L +
Sbjct: 4 SHHH-HHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDV-------ATMLNILALVYRD 55
Query: 170 AGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
++ +AL I P A NL V+Y + +Y A ++A LE
Sbjct: 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA-LEI 114
Query: 222 ---------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNN 264
P A+ N+ ++ +N+G E Y R L + PN KNN
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNW---------HYADAMYNLGVAYGEMLK 315
+A G YK+ L + K
Sbjct: 175 LASCYLKQG-------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227
Query: 316 FDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
+ + E + P +LG +Y+ + L+ A A +
Sbjct: 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-34
Identities = 46/317 (14%), Positives = 98/317 (30%), Gaps = 37/317 (11%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------------ALER 221
+++ + ++ D Y + + ++ Y Y L
Sbjct: 38 VEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTG 97
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN----FEIAK--NNMAIALTDLGTK 275
+ + G+ ++ + AI Y P E A+ +A A +
Sbjct: 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT 157
Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHF 329
I Q + Y+ Y+ +++ + Y + +D A+ E A
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGKM 384
+ A + N+ Y + AVE +Q A + + L L G+
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277
Query: 385 DAAAEMIEKAIA-----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439
A + IE+ + ++ Y E + L +Y++ D K + +
Sbjct: 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEA 337
Query: 440 QNRLLAMNYINEGHDDK 456
R A + + H ++
Sbjct: 338 CARSAAAVFESSCHFEQ 354
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 7e-34
Identities = 39/274 (14%), Positives = 84/274 (30%), Gaps = 25/274 (9%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+ G+ D+ VEA Y +A P E A + +
Sbjct: 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-KAEFHFKVAEAYYHMK 155
Query: 172 NTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
T + +AL I + + + Y + YD AL E A
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
A + N+ Y GD + A+ +++ VS E + + L L +
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR--EKVPDLLPKVLFGLSWTLCK 273
Query: 279 EGDINQGVAYYKKAL--------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
G + + ++ L + + + + K + ++E + +
Sbjct: 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE-KKNLH 332
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
+ + +++ + ++A Y+ L +
Sbjct: 333 AYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-32
Identities = 32/286 (11%), Positives = 72/286 (25%), Gaps = 60/286 (20%)
Query: 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
+ I Y EA K D A ++ + Y + Q ++ +A
Sbjct: 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
L ++ + Y + + A+ E L ++
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA---------------------- 212
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-----HFNPH 332
+ + A ++ N+ +Y MA+ ++ A
Sbjct: 213 -------------MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGKMDAA 387
+ L KA + + L + + L VY
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319
Query: 388 AEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
+++ + + + ++ + A Y + LK
Sbjct: 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 66/318 (20%)
Query: 206 QYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
A + E Y M ++ D Y V+ E
Sbjct: 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86
Query: 260 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319
+ + + + YY + G+ + ++ A
Sbjct: 87 TIE--------------TPQKKLTGLLKYY----SL--------FFRGMYEFDQKEYVEA 120
Query: 320 IVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPN 366
I +Y A AE + Y ++ AL I
Sbjct: 121 IGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISL 420
QSL + Y D A +E A+ + A + N+ Y +G +
Sbjct: 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLL---------------AMNYINEGHDDKLFEAHRDWG 465
A++ +++ K+ + ++L A +I EG D +H+ +
Sbjct: 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300
Query: 466 KRFMRLYSQYTSWDNTKD 483
+ F+ L + Y + +
Sbjct: 301 ELFLFLQAVYKETVDERK 318
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-33
Identities = 42/274 (15%), Positives = 85/274 (31%), Gaps = 24/274 (8%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+ G+ D+ + A + + KA S K E A + S
Sbjct: 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-KAEFFFKMSESYYYMK 157
Query: 172 NTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
T + +A +I + + + +L QY+ A+ ++KA
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+ + N+G+ ++ E AI ++R +AV ++ A +
Sbjct: 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAYFLITQIHYK 276
Query: 279 EGDINQGVAYYKKAL-----YYNWHYADAMYNLGVAY---GEMLKFDMAIVFYELAFHFN 330
G I++ Y+ K + + Y L Y + F E
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLY 335
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
+ ++ Y +R N KA + ++
Sbjct: 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 41/199 (20%)
Query: 171 GNTQDGIQKYYEAL----KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
G + + AL + ++ +N+G +Y+ L A + ++ A
Sbjct: 13 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
AY G++Y + AI + L NQ +
Sbjct: 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-------------------------NQLI 107
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
Y L + + +YN+ Y + ++ A LA
Sbjct: 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PR 155
Query: 347 RDNLDKAVECYQMALSIKP 365
+DKA+EC +P
Sbjct: 156 HSKIDKAMECVWKQKLYEP 174
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 24/176 (13%), Positives = 63/176 (35%), Gaps = 21/176 (11%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A +++N GV + + A+ + + C N+G +Y N+ +A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----------------YAE 403
+++ + + + G++Y K D A + +++A+ E
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459
N+ +Y A + + + R++ ++ AM + + +
Sbjct: 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK--AMECVWKQKLYEPVV 176
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 5e-23
Identities = 24/174 (13%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ A + + G+L D+ A +++ + + + ++G +
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAV---QDPH-------SRICFNIGCMYTIL 50
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---------- 220
N + + + ++ D H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110
Query: 221 ------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ E N+ +Y + + + A ++ +K + A+
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 1e-22
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A + N GV+ D+ + A++ + +++ S+ N+G +YT+ M A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
+I + A AY G+LY LAI ++ L ++ ++Y G
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ--------LIDYKILGL 114
Query: 454 DDKLFEAH 461
KLF
Sbjct: 115 QFKLFACE 122
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-29
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 394 AIAANPTYAEAYNNLGVLYRDAG 416
A+ +P AEA NLG + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 4e-28
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLG 273
I Y++ L + PN AK N+ A G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-26
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 359 MALSIKPNFSQSLNNLGVVYTVQG 382
AL + PN +++ NLG QG
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 94.4 bits (236), Expect = 1e-23
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A++ AEA+ N+G Y +GD + AI Y++ L + PN A N+ A G
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--- 57
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ I YY+KAL + + A+A NLG A +
Sbjct: 58 DYDEAI----EYYQKALELDPNNAEAKQNLGNAKQK 89
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 87.8 bits (219), Expect = 4e-21
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 223 MYAEAYCNMGVIYKNRG 239
AEA N+G + +G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 5e-21
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 362 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 421 AIDAYEQCLKIDPDSRNAGQNR 442
AI+ Y++ L++DP++ A QN
Sbjct: 62 AIEYYQKALELDPNNAEAKQNL 83
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 2e-12
Identities = 29/125 (23%), Positives = 39/125 (31%), Gaps = 45/125 (36%)
Query: 82 VEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESY 139
EA G G A + + +A++LDP NA A + G Y +G EA E Y
Sbjct: 9 AEAWYNLGNAYY--KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199
KAL +DP+ A A NLG
Sbjct: 67 QKALE-----------------------------------------LDPNNAEAKQNLGN 85
Query: 200 VYSEL 204
+
Sbjct: 86 AKQKQ 90
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 3e-06
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
N + + +A+ Y+ LE D N EA G G A + + +A++LDP
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDP 74
Query: 114 QNACAHTHCGILYKDEG 130
NA A + G + +G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 44/219 (20%)
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYCNM 231
+ L + A + LG VY+ + ++D A ++ + A +
Sbjct: 14 QAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQAL-QQQAQKSGDHTAEHRALHQV 72
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
G++ + G+ ++A C+ + + + ++ T GD+ Y+K
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 292 ALYYNWHYADAMY-NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
+L A A LG + + NL
Sbjct: 133 SL--------VYAQQADDQVAI---------------------ACAFRGLGDLAQQEKNL 163
Query: 351 DKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGK 383
+A + + A I ++ + L +
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 353
+ A + LG Y M +FD A ++ + A + +G++ + N D A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 354 VECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPT 400
C+ + S + + V G + A + EK++
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145
Query: 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
A A+ LG L + ++ A + + I + +
Sbjct: 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDI---FAELEDSEAVNELMTR 192
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-21
Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 22/146 (15%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
+ A LG +Y D D+A +Q ++L+ +G+V + G DAA
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 388 AEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+ + + + G ++ A YE+ L ++ A
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---AQQADD 142
Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGK 466
+A + G + +
Sbjct: 143 QVAIACAFRGLG------DLAQQEKN 162
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 5e-21
Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 27/187 (14%)
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS-----ADPSYKPAAECLAIVL 160
+ + A G +Y R EA S+ D + L
Sbjct: 16 QALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA------EHRAL 69
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGC 213
+G ++AGN + + E ++ + Y + V A
Sbjct: 70 HQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE 129
Query: 214 YEKAALE-------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
YEK +L + A A+ +G + + +L A + R + E +
Sbjct: 130 YEK-SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE-DSEAVN 187
Query: 267 IALTDLG 273
+T L
Sbjct: 188 ELMTRLN 194
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 4e-14
Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 44/200 (22%)
Query: 55 ANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
+ ++F +A A ++ + + + SG+ H + L +
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRAL--HQV--------------- 72
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
G++ + G A + + S + ++ T G+
Sbjct: 73 ----------GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122
Query: 173 TQDGIQKYYEALKI-----DPHY-APAYYNLGVVYSELMQYDTALGCYEKA------ALE 220
Q+Y ++L D A A+ LG + + A + +A +
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182
Query: 221 RPMYAEAYCNMGVIYKNRGD 240
E + + +
Sbjct: 183 SEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 352 KAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NP 399
+A + S + LG VY + D A + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL-LAMNYINEGHDDKLF 458
A + +G++ R AG+ A + + ++ + ++ L + N
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEEREL---LASLPEDPLAASANAYEVA------ 114
Query: 459 EAHRDWGK 466
+G
Sbjct: 115 TVALHFGD 122
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-27
Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 353
A NLG + + F A++ +E F A +NLG Y + A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 354 VECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTY 401
E Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
A +LG Y G+ A+ E+ L+I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-26
Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 47/186 (25%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESA 244
A+ NLG + L + A+ +E+ ++ AY N+G Y G+ E+A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
Y++ L + + L A + Y
Sbjct: 69 SEYYKKTLLL-----------------------------------ARQLKDRAVEAQSCY 93
Query: 305 NLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+LG Y + ++ AI ++ AC +LG Y N D+A+ +
Sbjct: 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153
Query: 359 MALSIK 364
L I
Sbjct: 154 KHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 102 bits (258), Expect = 1e-25
Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 47/189 (24%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
R A+ N+G + G+ A+ +E+ L ++
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA------------------------ 39
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHC 333
K A NLG AY + +F+ A +Y+
Sbjct: 40 -----------KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
A++C +LG Y + +KA++ + L+I + ++ +LG YT G D A
Sbjct: 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148
Query: 388 AEMIEKAIA 396
EK +
Sbjct: 149 MHFAEKHLE 157
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 1e-19
Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 15/153 (9%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A + G + G +A ++ + L + I ++LG + G +
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFET 67
Query: 176 GIQKYYEALKID------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RP 222
+ Y + L + A + Y+LG Y+ L Y+ A+ + K L R
Sbjct: 68 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK-HLAIAQELKDRI 126
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
A ++G Y G+ + A+ E+ L +S
Sbjct: 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 114 bits (285), Expect = 3e-27
Identities = 33/271 (12%), Positives = 77/271 (28%), Gaps = 18/271 (6%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
+ + Y + + E A + ++ + + L L D
Sbjct: 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK------D 147
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+++ + Y + ++ V + + F + + A +
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV------YTVQGKMDAAAEMIEKAI 395
+ ++ D ++ L + N V Y + ++ + + I
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 455
P A+N L + +D G +S + Q L + P + L Y + +
Sbjct: 268 KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ 326
Query: 456 KLFEAHRDWGKRFMRLYSQYTSWDNTKDPER 486
+ D + + L KD R
Sbjct: 327 C--DNKEDILNKALEL---CEILAKEKDTIR 352
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 5e-23
Identities = 28/263 (10%), Positives = 71/263 (26%), Gaps = 19/263 (7%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ + + + + + + R A + A+ + + ++L L L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ ++ P +++ V+ L L + A
Sbjct: 149 HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
+ + + + ++ + ++ L N +++ + + V
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQ 261
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 345
Y + + H A L + P L IY+
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 320
Query: 346 DR---------DNLDKAVECYQM 359
D D L+KA+E ++
Sbjct: 321 DMLENQCDNKEDILNKALELCEI 343
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 5e-20
Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 1/187 (0%)
Query: 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 350
+ Y+ + D + + A A N + V+ K + +L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
+ + + +P Q ++ V+ E I + + A+ +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 470
+ ++ + +Q LK D + + R ++ +D + E + ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 471 LYSQYTS 477
L S
Sbjct: 269 LVPHNES 275
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 8e-17
Identities = 19/192 (9%), Positives = 58/192 (30%), Gaps = 6/192 (3%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+ + ++E+ N + + + ++ + ++ + D +N A H +
Sbjct: 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
++ + + L D V+++ + +Q E +K
Sbjct: 210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQYTLEMIK 268
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI----YKNRGDL 241
+ PH A+ L + + + +P ++ Y ++
Sbjct: 269 LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327
Query: 242 ESAIACYERCLA 253
++ + L
Sbjct: 328 DNKEDILNKALE 339
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-27
Identities = 18/104 (17%), Positives = 38/104 (36%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ G++ ++ A + +E P EA +LG+ + + A+
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
A + P L V +T + +AA + + + P Y +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 3e-23
Identities = 18/97 (18%), Positives = 37/97 (38%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
G S+ N + + + +P A+ +LG+ +E + A+ A + P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
+ + V + N + +A+A L P +E
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 1e-22
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 330 NPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
NP+ E G+ NL +A ++ +P ++ +LG+ K A
Sbjct: 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+ A +P + L V + + + + A+ + L P
Sbjct: 72 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 9e-22
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
G+ +L A +E + P EA+ ++G+ AI
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
+ P +A++ T+ E + N +A + L Y
Sbjct: 77 ARMLDPKDIAVHAALAVSHTN-------EHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 1e-21
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
G+ + AA E P EA+ +LG+ + LAI A +D
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 464
P LA+++ NE + + + R W
Sbjct: 82 PKDIAVHAA--LAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 7e-20
Identities = 17/98 (17%), Positives = 36/98 (36%)
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
G + ++ + ++ +A +LG+ E K +AI+ A +P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
L V + + N + A+ + L +P + Q
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-18
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G+ L EAA ++ +P + A LG + I
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQKEPEREEA-------WRSLGLTQAENEKDGLAIIALNH 76
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
A +DP + L V ++ + AL L +P Y +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 4e-18
Identities = 20/104 (19%), Positives = 38/104 (36%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
++ + + +A +E V +K+ EA G+ LA + +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
A LDP++ H + + +E A S L + P Y+
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 7e-15
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 7/111 (6%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
E + +G+ + A +F + +P+ A G+ + + A + +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191
A DP L S N + L P Y
Sbjct: 76 HARMLDPKDIAV-------HAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 17/269 (6%)
Query: 171 GNTQDGIQKYYEALKIDPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ Q I + P L Y +Y L + ++ +A
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP---ELQAVR 69
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ ++ +A +R ++ S + L + + + + +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVD-----VTNTTFLLMAASIYFYDQNPDAALR-- 122
Query: 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI--YKDR 347
+ + M ++ + D+A + + +
Sbjct: 123 ---TLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
+ L A +Q LN + QG+ +AA ++++A+ + + E N
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 408 LGVLYRDAGSISLAIDAYEQCLK-IDPDS 435
L VL + G + Y LK
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 1e-16
Identities = 29/263 (11%), Positives = 63/263 (23%), Gaps = 22/263 (8%)
Query: 206 QYDTALGCYEKAALERPMYA-EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
Y + ++ P E + Y + + + +
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAP 63
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL--GVAYGEMLKFDMAIVF 322
A+ + + VA + + + + + L Y D A+
Sbjct: 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
E I D LD A + + + + + V G
Sbjct: 124 LH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 383 --KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
K+ A + ++ N + G A ++ L D
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 441 NRLLAMNYINEGHDDKLFEAHRD 463
N L + + G ++ +
Sbjct: 239 N--LVVLSQHLGKPPEVTNRYLS 259
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 5e-14
Identities = 24/171 (14%), Positives = 40/171 (23%), Gaps = 14/171 (8%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L A+I AL ++E L + LA +
Sbjct: 105 LMAASIYFYDQNPDAALRTLH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159
Query: 112 DPQNACAHTHCGI--LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
D L +L +A + + ++L
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-------LLLLNGQAACHMA 212
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
G + EAL D + NL V+ L + Y +
Sbjct: 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 2e-12
Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 10/143 (6%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAV 109
IL ++ A + + ++D + +L A+ F E
Sbjct: 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+ +GR A +AL D + L +L +
Sbjct: 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-------PETLINLVVLSQH 246
Query: 170 AGNTQDGIQKYYEALK-IDPHYA 191
G + +Y LK +
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSHP 269
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 6e-11
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A ++ ++ K DA +++ + +K S + G+ C Q A EA+
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESY-HKALSADPSY 149
D + + +L + G+ E Y + A S+
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-26
Identities = 49/266 (18%), Positives = 79/266 (29%), Gaps = 47/266 (17%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A Y V +KN LE A Y + N + A A G +K + +
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPE 94
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
V Y +KA Y E D A A A + G +
Sbjct: 95 AVQYIEKASVM--------------YVENGTPDTA--------------AMALDRAGKLM 126
Query: 345 KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
+ D L KAV YQ A ++ ++ + + Q K D AA ++K +
Sbjct: 127 EPLD-LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185
Query: 399 ------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID--PDSRNAGQNRLLAMNYIN 450
PT + ++ A + I S + L +
Sbjct: 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLL-QAYD 244
Query: 451 EGHDDKLFEAHRDWGKRFMRLYSQYT 476
E +++L R + + Y
Sbjct: 245 EQDEEQLLRVCRS--PLVTYMDNDYA 268
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 2e-20
Identities = 51/294 (17%), Positives = 83/294 (28%), Gaps = 71/294 (24%)
Query: 130 GRLVEAAESYHKA--------LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181
++ EA E KA + P Y AA + K A + Y
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEY----AKAAVAFKNAKQLEQAKDAYL 60
Query: 182 EALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA-----LERPMYAEAYCN 230
+ + H A A+ G++ +L + A+ EKA+ P A +
Sbjct: 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
DL A+ Y++ AV N E
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEE------------------------------- 149
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIY 344
A+ + KFD A + P C + C ++
Sbjct: 150 ----RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGVVYTVQGKMDAAAEMIEK 393
R + A +C + + SI P FS S L +L Y + + +
Sbjct: 206 LHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQAYD-EQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 2e-18
Identities = 31/206 (15%), Positives = 65/206 (31%), Gaps = 17/206 (8%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ +K+ +L +A ++Y + A + + A G LK + +Q +
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA-AKAFEQAGMMLKDLQRMPEAVQYIEK 101
Query: 183 ALKI-----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA-----LERPMYA-EAYCNM 231
A + P A + E + A+ Y++AA ER A E
Sbjct: 102 ASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ + + A A ++ ++ E D ++
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMYKEME-NYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220
Query: 292 AL-YYNWHYAD---AMYNLGVAYGEM 313
+ + ++ A+ +L AY E
Sbjct: 221 SYSIPGFSGSEDCAALEDLLQAYDEQ 246
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 9e-26
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 9/113 (7%)
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ YY GV+ + Y ++ +EKA P ++ + G N E A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 246 ACYERCLAVSPNFEIAK--NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
CY + V + A AL + E + +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIE---GKEVEA----EIAEARAKLE 106
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-25
Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
E GV+ D N ++++ ++ A+ + P S+ G + + A +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 390 MIEKAIA--ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
I + + + R + + E K++
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 6e-23
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER 221
G AGN + I + +A+++DP + + G L +Y+ A+ CY +
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
+ + + E E + +
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 93.3 bits (233), Expect = 8e-23
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ Y GV + + +I +E A +P ++ G + + ++AV+CY
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Query: 358 QMALSIKPNFSQSL--NNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
+++ + + AE+ E +
Sbjct: 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 91.7 bits (229), Expect = 3e-22
Identities = 13/148 (8%), Positives = 38/148 (25%), Gaps = 43/148 (29%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
E Y GV+ + G+ +I +E+ + + P
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------------------------ 38
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNN 339
+ G A + +++ A+ Y + + + +
Sbjct: 39 -----------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNF 367
+ + + E + ++ +
Sbjct: 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 3e-17
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 43/139 (30%)
Query: 81 NVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
N E + +G+ + G + D F +A++LDP+ + G + R EA +
Sbjct: 5 NPEEYYLEGVLQY--DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
Y+ ++ + D + +
Sbjct: 63 YNYVIN---------------------------------------VIEDEYNKDVWAAKA 83
Query: 199 VVYSELMQYDTALGCYEKA 217
+ + E
Sbjct: 84 DALRYIEGKEVEAEIAEAR 102
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 73.6 bits (182), Expect = 6e-16
Identities = 14/76 (18%), Positives = 28/76 (36%)
Query: 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
+ + GV+ G + ++ EKAI +P ++ + G + A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 423 DAYEQCLKIDPDSRNA 438
D Y + + D N
Sbjct: 61 DCYNYVINVIEDEYNK 76
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 68.2 bits (168), Expect = 4e-14
Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKL- 111
+ + +++ L+E ++ D + + KG L N+ R A D ++ + +
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEEAVDCYNYVINVI 70
Query: 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
D N + AE + +
Sbjct: 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-06
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
E Y GVL DAG+ + +ID +E+ +++DP+ +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMK 46
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 3e-05
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 55 ANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
L + ++ +A+ Y I + +D N + K L+ + + KL+
Sbjct: 47 GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106
Query: 113 PQNA 116
+
Sbjct: 107 HHHH 110
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 3e-24
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 4/132 (3%)
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
+ G + + +Y LG + K+D A ++ + + A LG
Sbjct: 2 SDG-GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA 60
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA---ANP 399
+ ++A++ Y + N + + + G +D A A A A P
Sbjct: 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 400 TYAEAYNNLGVL 411
+ G +
Sbjct: 121 AHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 2e-23
Identities = 13/127 (10%), Positives = 29/127 (22%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ + E LG D A + +Q + ++ LG G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ A + + + + G + A + +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126
Query: 443 LLAMNYI 449
A +
Sbjct: 127 ARAGAML 133
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 2e-23
Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 10/141 (7%)
Query: 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
+ L LG + AG D + + +D + A + L
Sbjct: 6 TLAMLRGLSEDT-------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL 58
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
G L Y+ AL Y AL + + GDL+ A + + A++
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Query: 258 ---FEIAKNNMAIALTDLGTK 275
E L + +
Sbjct: 119 QPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 1e-18
Identities = 11/124 (8%), Positives = 31/124 (25%), Gaps = 7/124 (5%)
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+S + + G + ++ + + A
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAG-------KWDDAQKIFQALCMLDHYDARYFLG 57
Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
LG + ++ A+ Y + + + + +LD A + A ++
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 366 NFSQ 369
Sbjct: 118 AQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-16
Identities = 17/101 (16%), Positives = 32/101 (31%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
K+ DA +++ + D + +G G C Q + A S+S +D
Sbjct: 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
H + G L A ++ A + +
Sbjct: 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 3e-15
Identities = 18/142 (12%), Positives = 32/142 (22%), Gaps = 10/142 (7%)
Query: 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128
++ +E G A F LD +A G +
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-- 186
G +A +SY D + G+ +Y A +
Sbjct: 65 LGLYEQALQSYSYGALMDINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 187 -DPHYAPAYYNLGVVYSELMQY 207
P + G + +
Sbjct: 118 AQPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 15/96 (15%), Positives = 21/96 (21%), Gaps = 11/96 (11%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L +S + AL Y D C A F A L
Sbjct: 56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
L A + +A++A
Sbjct: 116 AAAQP-----------AHEALAARAGAMLEAVTARK 140
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 7e-24
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
Q ++ L + LG Y+E Q+D AL A P Y+ A+ +G
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 234 IYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLG 273
+ +GD A +E LA + + + + + L L
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 6e-23
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
+ E + L+ + LG Y + DAA + A+ +PTY+ A+ LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+ G + A A+E L +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-21
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
E LG Y + + D A+ + AL P +S + LG
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 379 TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427
QG A + E +AA + + L V R A++ +
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR-EDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-18
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ L + LG Y E +FD A+ A F+P + A LG +
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64
Query: 346 DRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAA 387
+ + A + ++ L+ + Q + L V + DA
Sbjct: 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDAL 108
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-18
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 9/117 (7%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
E L+ ++ LG + + AL DP Y+ A
Sbjct: 3 AITERLEAMLAQGTDN-------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLESAIACY 248
+ LG A +E + + V + ++ +
Sbjct: 56 WKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-14
Identities = 14/120 (11%), Positives = 33/120 (27%), Gaps = 9/120 (7%)
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+++ E LA + + + + + + + + + AL ++ Y+
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHE-------QFDAALPHLRAALDFDPTYS 53
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQ 358
A LG A +E + L V + D +
Sbjct: 54 VAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-14
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
E +L + + N+ G A A+ DP + A G
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 126 YKDEGRLVEAAESYHKALSADPSY--KPAAECLAIVLTDLG 164
+ +G A +++ L+A S + + L + L L
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-12
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
M A E +E +A LG Y + A+ L DP A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW-- 58
Query: 444 LAMNYINEGHDDK 456
L +G
Sbjct: 59 LGKTLQGQGDRAG 71
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 10/98 (10%)
Query: 50 DALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDS 104
+ L +F AL L+ D A G LQ Q G A +
Sbjct: 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ--GDRAGARQA 75
Query: 105 FSEAVKLDPQNACAHTH--CGILYKDEGRLVEAAESYH 140
+ + + + R +A E +H
Sbjct: 76 WESGLAAAQSRGDQQVVKELQVFLRRLARE-DALEHHH 112
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 4e-23
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
A A +LG + + +KA Y A+ + P+ NN VY + K +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 390 MIEKAIAANP-------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
EKA+ A+A + G ++ +SLA+ + + L D
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-21
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI DLG + + + Y +A+++DP Y N VY E ++ + EK
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A + + A+A G ++ + DL A+ + R L+ + E+ K
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 20/107 (18%), Positives = 40/107 (37%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
A A +LG + ++ A Y+KA P Y N +Y +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
E+ + V +A A++ G + + D++ V ++ ++L
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-17
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 16/130 (12%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
A A ++G + D E A Y++ + + P+ NN A +
Sbjct: 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE------- 55
Query: 280 GDINQGVAYYKKAL-------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFN 330
+ V + +KA+ A AM G A+ + +A+ ++ L+ +
Sbjct: 56 KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Query: 331 PHCAEACNNL 340
P + L
Sbjct: 116 PELVKKVKEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 8e-13
Identities = 16/86 (18%), Positives = 37/86 (43%)
Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
+ + + + +LG Q + A +KAI +P+ YNN +Y + +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ E+ +++ ++R + AM+
Sbjct: 62 VQFCEKAVEVGRETRADYKLIAKAMS 87
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-09
Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 34/122 (27%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A + +A++LDP N + + +Y +E + E + KA+
Sbjct: 27 AHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR------------- 73
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
E A A G + + A+ + ++ E
Sbjct: 74 ---------------------ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112
Query: 221 RP 222
Sbjct: 113 FR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + F A Y+ +E D N+ + K + +AV++ +
Sbjct: 16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75
Query: 116 -------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A A + G ++ + L A + +H++LS + +
Sbjct: 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 1e-22
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 31/241 (12%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAI 245
LG + + A +EKA + N+GV+Y +G +L+ A
Sbjct: 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAA 62
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+ Y + A N+ + + G V + N+ + YY KA YA+ +
Sbjct: 63 SFYAK--ACDLNYSNGCHLLGNLYYS-GQGVSQ--NTNKALQYYSKACDLK--YAEGCAS 115
Query: 306 LGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECY 357
LG Y G+++ F A+ ++ A N + C LG +Y +L KA+ Y
Sbjct: 116 LGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASY 173
Query: 358 QMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
A S N G +Y A KA NLG +
Sbjct: 174 DKA--CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQY 229
Query: 414 D 414
+
Sbjct: 230 N 230
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 55/261 (21%), Positives = 89/261 (34%), Gaps = 42/261 (16%)
Query: 178 QKYYEALKI-----DPHYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAY 228
+ + +A K D +NLGV+Y + + + A Y KA Y+
Sbjct: 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77
Query: 229 CNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+G +Y + +G + A+ Y + A + ++ D G V D +
Sbjct: 78 HLLGNLYYSGQGVSQNTNKALQYYSK--ACDLKYAEGCASLGGIYHD-GKVV--TRDFKK 132
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFDM--AIVFYELAFHFNPHCAEACNNL 340
V Y+ KA N D LG Y G D+ A+ Y+ A + C N
Sbjct: 133 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNA 188
Query: 341 GVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAAEMI 391
G +Y + N +A+ Y A + NLG + G+ A E
Sbjct: 189 GNMYHHGEGATKNFKEALARYSKA--CELENGGGCFNLGAMQ-YNGEGVTRNEKQAIENF 245
Query: 392 EKAIAANPTYAEAYNNLGVLY 412
+K A + L L
Sbjct: 246 KKGCKLG--AKGACDILKQLK 264
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 60/293 (20%), Positives = 101/293 (34%), Gaps = 58/293 (19%)
Query: 80 GNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV----- 133
+ + +G G + ++ + A F +A L + G+LY +G+ V
Sbjct: 4 QDPKELVGLGAKSYKEKDFTQ-AKKYFEKACDLK--ENSGCFNLGVLY-YQGQGVEKNLK 59
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-----DP 188
+AA Y KA D +Y L L G G +Q+ +AL+ D
Sbjct: 60 KAASFYAKA--CDLNYSNGCHLLG-NLYYSGQ-----GVSQN----TNKALQYYSKACDL 107
Query: 189 HYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---D 240
YA +LG +Y + + + + A+ + KA + +G +Y RG D
Sbjct: 108 KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD 165
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
L+ A+A Y++ A N G + + +A Y KA
Sbjct: 166 LKKALASYDK--ACDLKDSPGCFNAGNMYHH-GEGA--TKNFKEALARYSKACELE--NG 218
Query: 301 DAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 345
+NLG G AI ++ C AC+ L +
Sbjct: 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKG------CKLGAKGACDILKQLKI 265
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-22
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
+P L + DN +A+ ++ + P++ + +LG +Y + D A +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 390 MIEKAIAANPTYAEAY--NNLGVLYRDAGSI 418
+ I + L A +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-21
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
DP Y L + + AL +E+ P Y Y ++G +Y+ + AI
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 247 CYERCLAVSPNFEIAK--NNMAIALTDLG 273
Y + + V+ K + + A
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAE 91
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-19
Identities = 16/74 (21%), Positives = 27/74 (36%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
P + L + A + E+ + +P Y Y +LG LY AID
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 425 YEQCLKIDPDSRNA 438
Y Q +++ +
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 6e-19
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
Y L + + A+ +E +P +LG +Y+ D D A++ Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 359 MALSIKPNFS--QSLNNLGVVYTVQGKMD 385
+ + + L+ L ++
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLE 94
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 8e-17
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
L N + + E ++ DP Y YY+LG +Y L + D A+ Y +
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 223 MYAEAY--CNMGVIYKNRGDLESAIACY 248
+ LE +
Sbjct: 73 EEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 3e-16
Identities = 10/107 (9%), Positives = 29/107 (27%), Gaps = 9/107 (8%)
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+E P + + + A+A +E + P++ ++ L
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL------ 54
Query: 279 EGDINQGVAYYKKALYYNWHYADA--MYNLGVAYGEMLKFDMAIVFY 323
+ + Y + + + L A + + +
Sbjct: 55 -DRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
+D + + A F E V+ DP + H G LY+ R +A
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 137 ESYHKALSADPSY 149
++Y + +
Sbjct: 62 DTYAQGIEVAREE 74
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
+P L + + S A+ +E+ ++ DPD + L Y D
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH--LGKLYERLDRTDD 59
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+D + A + ALAL+E ++E D V + G + + A D++
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
Query: 106 SEAVKLDPQNACAHTHC--GILYKDEGRLVEAAESY 139
++ +++ + L +
Sbjct: 65 AQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 2e-21
Identities = 16/148 (10%), Positives = 41/148 (27%)
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
G + G + + +Y+L + ++ A ++ + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
LG + D A+ Y + + + G++ A + A
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
E + +I L + +
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 3e-21
Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 7/145 (4%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G L + L L + +G +D + +D +
Sbjct: 1 GPLGSGGGTIAMLNEISSDT-------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY 53
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ + LG + QYD A+ Y A+ + G+L A +
Sbjct: 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGT 274
+ N + L
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEA 138
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 4e-20
Identities = 13/142 (9%), Positives = 31/142 (21%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ + E +L + A +Q + S+ L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
G G+ D A + + G ++ A ++ +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 435 SRNAGQNRLLAMNYINEGHDDK 456
+ + + K
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 2e-18
Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 7/152 (4%)
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
G L S +S + ++A G ++ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-------YEDAHXVFQALCVLDHY 53
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+ LG M ++D+AI Y + + L +A
Sbjct: 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390
+A + N + V ++ + EM
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEAIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 3e-14
Identities = 20/96 (20%), Positives = 30/96 (31%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S A + DA +++ + D + +G G C Q LA S+S +D
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
H G L EA A +
Sbjct: 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 1e-12
Identities = 16/127 (12%), Positives = 28/127 (22%), Gaps = 7/127 (5%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
++ E S +E A F LD ++
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + G+ A SY D L G + +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRF-------PFHAAECLLQXGELAEAESGLFL 114
Query: 183 ALKIDPH 189
A ++ +
Sbjct: 115 AQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 7/57 (12%), Positives = 15/57 (26%)
Query: 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
G + + I + E +L +G A ++ +D
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 2e-21
Identities = 78/412 (18%), Positives = 132/412 (32%), Gaps = 86/412 (20%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQM-----QNMGRLAFDSFSEAVKLDPQNACAHT 120
+ L ++ + +SG +A + G +++ + A D F A + A
Sbjct: 23 GNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQ-AMDWFRRAAEQG--YTPAEY 79
Query: 121 HCGILYKDEGRLV-----EAAESYHKALSADPSYKPAAECLAI-------VLTDLGTSLK 168
G+ Y G V +A Y KA A A + L + V D S+K
Sbjct: 80 VLGLRY-MNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQNLGVMYHEGNGVKVDKAESVK 136
Query: 169 L------AGNTQ------------DGIQK-YYEALKI-----DPHYAPAYYNLGVVYSE- 203
G DG+ + Y A + + + LG +YS
Sbjct: 137 WFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRG 196
Query: 204 --LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAIACYERCLAVSP 256
+ + + Y K+A ++ +Y G D + + + +
Sbjct: 197 LGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ--SAEQ 252
Query: 257 NFEIAKNNMAIA-LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
IA+ + L + + + +Y+K+ +D Y L Y + +
Sbjct: 253 GNSIAQFRLGYILEQGLAGAK----EPLKALEWYRKS--AEQGNSDGQYYLAHLYDKGAE 306
Query: 316 -----FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNF 367
+ AI +Y + A A NLG IY KAVE ++ A
Sbjct: 307 GVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKA--AAKGE 362
Query: 368 SQSLNNLGVVYTVQGK-----MDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ NLG QGK AA + KA + A LG +Y
Sbjct: 363 KAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY 411
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 4e-20
Identities = 67/344 (19%), Positives = 109/344 (31%), Gaps = 55/344 (15%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC-LAIV 159
+ + + A A G Y +G + +A+ ++ AAE
Sbjct: 26 NLEQLKQKAESG--EAKAQLELGYRY-FQGNETT--KDLTQAMD---WFRRAAEQGYTPA 77
Query: 160 LTDLGTSLKL-AGNTQDGIQ--KYYE--ALKIDPHYAPAYYNLGVVYSE----LMQYDTA 210
LG G QD Q +Y+ ALK A NLGV+Y E + +
Sbjct: 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---GLPQAQQNLGVMYHEGNGVKVDKAES 134
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMA 266
+ + AA + +MG Y G D A Y + A + N +
Sbjct: 135 VKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK--AAEQGNVWSCNQLG 190
Query: 267 IALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFD--MAIV 321
+ LG + + +Y+K+ +L Y G + D + V
Sbjct: 191 YMYSRGLGVER----NDAISAQWYRKS--ATSGDELGQLHLADMYYFGIGVTQDYTQSRV 244
Query: 322 FYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
+ + + A LG I + KA+E Y+ + + S L +
Sbjct: 245 LFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKS--AEQGNSDGQYYLAHL 300
Query: 378 YT-----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
Y V + A K+ A A NLG +Y G
Sbjct: 301 YDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLG 342
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 3e-14
Identities = 46/276 (16%), Positives = 93/276 (33%), Gaps = 55/276 (19%)
Query: 115 NACAHTHCGILYKDEGRLV-----EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+ H +Y G V ++ + ++ A+ A L +L + G
Sbjct: 218 DELGQLHLADMY-YFGIGVTQDYTQSRVLFSQS--AEQGNSIAQFRLGYIL-EQGL---- 269
Query: 170 AGNTQDGIQKYYEALK-----IDPHYAPAYYNLGVVYSELMQ-----YDTALGCYEKAAL 219
++ +AL+ + + Y L +Y + + + A+ Y K+A
Sbjct: 270 -AGAKE----PLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324
Query: 220 ERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTK 275
+ A A N+G IY G + + A+ + + A + + A+ N+ AL G K
Sbjct: 325 QG--DATAQANLGAIYFRLGSEEEHKKAVEWFRK--AAAKGEKAAQFNLGNALLQGKGVK 380
Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFD--MAIVFYELAFHFNP 331
D Q + +KA + A LG Y G ++ D A +++ A +
Sbjct: 381 K----DEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434
Query: 332 HCAEACNNLGVIYKDR-------DNLDKAVECYQMA 360
I + + + + +
Sbjct: 435 --NLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 20/165 (12%)
Query: 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFDM- 318
K+ +A+ LT L V L N + K+ A A LG Y G D+
Sbjct: 3 KSLLAVMLTGLFALVSLPALGNVNLEQLKQKAESG--EAKAQLELGYRYFQGNETTKDLT 60
Query: 319 -AIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNN 373
A+ ++ A A LG+ Y + + + +AV Y+ A Q+ N
Sbjct: 61 QAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQN 116
Query: 374 LGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
LGV+Y V+ + + A ++G Y +
Sbjct: 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFE 159
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 3e-21
Identities = 30/122 (24%), Positives = 52/122 (42%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
+ AE G +N + AV Y A+ + P + N Y+ G A +
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449
E+AI +P Y++AY +G+ A+ Y++ L++DPD+ N +A +
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Query: 450 NE 451
E
Sbjct: 128 RE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 5e-21
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
N + + Y +A++++P A + N YS+L Y A+ E+A P Y++AY
Sbjct: 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
MG+ + A+A Y++ L + P+ E K+N+ IA L
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 1e-18
Identities = 27/115 (23%), Positives = 47/115 (40%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A+ + G ++ F+ A+ FY A NP A N Y N AV+ +
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
A+ I P +S++ +G+ + K A +KA+ +P +NL +
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-18
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
+ D A G ++ ++ A+ Y KA P A +CN Y G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
A+ ER + + P + A M +AL+ L + VAYYKKAL +
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLN-------KHVEAVAYYKKALELDPDNET 115
Query: 302 AMYNLGVAYGEM 313
NL +A ++
Sbjct: 116 YKSNLKIAELKL 127
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 5e-16
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
E AE G + E+A+ Y + + ++P + N A A + L
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL------- 59
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
G+ V ++A+ + Y+ A +G+A + K A+ +Y+ A +P +N
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119
Query: 340 LGVIYK 345
L +
Sbjct: 120 LKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-15
Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 7/134 (5%)
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+ D A G A Y KA+ +P+ A+ + +
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAA 55
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
GN +Q A+ IDP Y+ AY +G+ S L ++ A+ Y+KA P
Sbjct: 56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115
Query: 227 AYCNMGVIYKNRGD 240
N+ + +
Sbjct: 116 YKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-10
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
++ L G +AA KAI NP A + N Y G+ + A+
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 423 DAYEQCLKIDPD 434
E+ + IDP
Sbjct: 67 QDCERAICIDPA 78
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-10
Identities = 24/111 (21%), Positives = 36/111 (32%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N F A+ Y +E + N + A A+ +DP
Sbjct: 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+ A+ G+ + VEA Y KAL DP + L I L +
Sbjct: 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 3e-21
Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 7/151 (4%)
Query: 297 WHYADAMY----NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
W A Y + + + + + NP +E LG Y +++
Sbjct: 3 WQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSN 62
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLG 409
++ Y+ AL ++ ++ L V Q MI+KA+A + A L
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+ + AI+ +++ + ++ N Q
Sbjct: 123 SDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 1e-17
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 4/153 (2%)
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
P ++ + D + + + + + + N ++ LG Y
Sbjct: 1 PKWQAVRAEYQ-RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQMALSIKPNFSQSLN 372
+ +++ Y A AE L + + + AL++ N +L
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
L +Q A E+ +K + N
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 5e-16
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 11/150 (7%)
Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
P ++ A D N + +Q + ++ +P + + LG Y
Sbjct: 1 PKWQ-AVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIY---KNRGDLESAIACYERCLAVSPNFEIAKN 263
Y +L Y +A R AE Y + + ++ A ++ LA+ N A
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+A + Q + ++K +
Sbjct: 120 LLASDAFMQ-------ANYAQAIELWQKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 5e-16
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 11/140 (7%)
Query: 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
QN + + ++ +PQN+ G Y + + +Y +AL
Sbjct: 21 ASQQNPEAQL-QALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 152 AAECLAIVLTDLGTSLKLAGN---TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
L T L + T +AL +D + A L Y
Sbjct: 80 L-------YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 209 TALGCYEKAALERPMYAEAY 228
A+ ++K
Sbjct: 133 QAIELWQKVMDLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 9e-15
Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ + N + ++ Q + P S+ LG Y Q + +A+ AE
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 404 AYNNLG-VLYRDAGSISL--AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460
Y L VLY A ++ L +D + A LLA + + + +A
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA--LMLLASDAFMQANYA---QA 134
Query: 461 HRDWGK 466
W K
Sbjct: 135 IELWQK 140
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-13
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 10/135 (7%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ + ++ + A+P + LG + + + Y +AL+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 186 IDPHYAPAYYNLGVVYSELMQY---DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
+ A Y L V +KA A + + +
Sbjct: 73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 243 SAIACYERCLAVSPN 257
AI +++ + ++
Sbjct: 133 QAIELWQKVMDLNSP 147
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-10
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVKL 111
+N + ++L Y L+ N E + L Q + +A+ L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
D A + +A E + K + + +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 9e-10
Identities = 18/87 (20%), Positives = 33/87 (37%)
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
Q + + Q +A + ++ I ANP +E + LG Y S ++ AY Q
Sbjct: 11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70
Query: 429 LKIDPDSRNAGQNRLLAMNYINEGHDD 455
L++ ++ + Y H
Sbjct: 71 LQLRGENAELYAALATVLYYQASQHMT 97
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 1e-20
Identities = 11/122 (9%), Positives = 38/122 (31%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ + + + ++ +++A ++ + L +Y ++
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ AA++ A A + G + A + +E ++ D + + +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQ 144
Query: 443 LL 444
Sbjct: 145 SY 146
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 9e-20
Identities = 19/113 (16%), Positives = 40/113 (35%)
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
A K D +Y+ + + + A VF+ ++ + + L IY+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
++ +A + Y +A ++ N + + G A E E I +
Sbjct: 83 KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 5e-19
Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 3/136 (2%)
Query: 134 EAAESYHKALSADPSYKPAAEC---LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
+ + A+++ + K + + G ++ + D +
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
L +Y Q+ A Y A + G A C+E
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129
Query: 251 CLAVSPNFEIAKNNMA 266
+ S + ++ +
Sbjct: 130 VIQHSNDEKLKIKAQS 145
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 1e-17
Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 7/114 (6%)
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
+ I Y+ + + + A + + + + IY+ +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ A Y A+ N + L + ++ +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL-------KAPLKAKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 1e-15
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Query: 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318
I + M + +G I + +++ Y+++ D + L Y +F
Sbjct: 30 AIPDDMMD-DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ 88
Query: 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
A Y +AF + + G KA EC+++ + +
Sbjct: 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 17/95 (17%), Positives = 35/95 (36%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
SYA ++ + +A + + D NV+ +G Q++ + A D ++ A L
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
+ H G ++A E + +
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 3e-13
Identities = 8/81 (9%), Positives = 24/81 (29%)
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ +I + + + + +G+++ A + + L +Y+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 415 AGSISLAIDAYEQCLKIDPDS 435
A D Y + +
Sbjct: 83 KEQFQQAADLYAVAFALGKND 103
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-12
Identities = 19/170 (11%), Positives = 41/170 (24%), Gaps = 45/170 (26%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSE 107
+ +I + +++ A + + ++ N GR+ A F
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFY--NKGRIEEAEVFFRF 61
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
D N +Y+ + + +AA+ Y
Sbjct: 62 LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV-------------------------- 95
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
A + + ++ G L A C+E
Sbjct: 96 ---------------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+ A I + + +F A LY + + G C A + F ++
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 112 DPQNA 116
Sbjct: 134 SNDEK 138
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 8e-19
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 171 GNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
G + Y +A+ A Y LG + L +Y A + P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIAL 269
++ N G E + + +A + + E I AI
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 7e-18
Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 350 LDKAVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
+AV Y+ A++ + ++ LG + G+ A ++ + P +
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
++ + G ++ + + D
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-16
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 206 QYDTALGCYEKA---ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
A+ YEKA L+ AE Y +G ++ G+ A A + PN + +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 263 NNMAIALTDLG---------TKVKLEGDINQGVAYYKKALYYNWHYADA 302
A+ L +LG K+ E ++ + YK+A+ + YAD
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF---YADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 5e-15
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 315 KFDMAIVFYELAFHFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371
A+ +YE A AE LG ++ KA + PN
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
+V G+ + E++ K IA + Y+ AI Y L
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS-----YK------QAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-13
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 280 GDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
G Q V YY+KA+ A+ LG + + ++ A P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
++ + ++ VE ++ +
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 8e-13
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 19/125 (15%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G +A Y KA+++ K AEC LG++ + G + +K P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECY----LGLGSTFRTLGEYRKAEAVLANGVKQFPN 59
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE--AYCNMGVIYKNRGDLESAIAC 247
+ +V L +Y+ + K E +Y + AI
Sbjct: 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY-------------KQAILF 106
Query: 248 YERCL 252
Y L
Sbjct: 107 YADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-12
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 380 VQGKMDAAAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436
V G A EKAIA+ AE Y LG +R G A +K P+ +
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 437 NAGQNRLLAMNYINEGHDDK 456
AM N G ++
Sbjct: 62 ALRVF--YAMVLYNLGRYEQ 79
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-09
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 23/127 (18%)
Query: 96 NMGRL--AFDSFSEAVKL---DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
+G A + +A+ A + G ++ G +A + P+++
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
A+VL +L G + G++ + + + Y A
Sbjct: 62 ALRVFYAMVLYNL-------GRYEQGVELLLKIIAETSDDE-----------TIQSYKQA 103
Query: 211 LGCYEKA 217
+ Y
Sbjct: 104 ILFYADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 66 DALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHT 120
A+ YE + + E ++G G + +G A + VK P +
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTF--RTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYK 150
++ + GR + E K ++ +
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDDE 95
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 1e-18
Identities = 50/388 (12%), Positives = 103/388 (26%), Gaps = 73/388 (18%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ ++G EA AL P + +A + LG L G + +
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA--TSVLGEVLHCKGELTRSLALMQQ 78
Query: 183 ALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--------ALERPMYAEAY 228
++ + + + TA EKA + PM+
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
+ L+ A A + V +++ L L GD++ +
Sbjct: 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ--QQLQCLAMLIQCSLARGDLDNARSQ 196
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
+ + +H + A + ++
Sbjct: 197 LNRLEN--------------------------LLGNGKYHS-DWISNANKVRVIYWQMTG 229
Query: 349 NLDKAVECYQMAL----SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------N 398
+ A + + N+ + G+ + A ++E+
Sbjct: 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 289
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG------ 452
L LY AG S A LK+ A + + +++ EG
Sbjct: 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL------ANRTGFI-SHFVIEGEAMAQQ 342
Query: 453 -----HDDKLFEAHRDWGKRFMRLYSQY 475
+ L E + +R +R +Q+
Sbjct: 343 LRQLIQLNTLPELEQHRAQRILREINQH 370
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 1e-16
Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 33/290 (11%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
K E M+AE + N G+ + A + L P + +A + LG
Sbjct: 5 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 62
Query: 276 VKLEGDINQGVAYYKKALYY-----NWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAF-- 327
+ +G++ + +A ++ WHY ++ A E AF
Sbjct: 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122
Query: 328 ------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGV 376
P + LD+A + + + ++ L L
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182
Query: 377 VYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
+G +D A + + + + A + ++ G + A +
Sbjct: 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242
Query: 430 KIDPDSR--NAGQNRLLAMNYINEGHDDK---LFEAHRDWGKRFMRLYSQ 474
K + + GQ R +A I G + + E + + +
Sbjct: 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 6e-13
Identities = 41/337 (12%), Positives = 85/337 (25%), Gaps = 63/337 (18%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRL--AFDSFSE 107
A + + +A L ++ LE+ + A G L + G L + +
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQ 78
Query: 108 AVKL------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
++ + + +G L A E+ KA ++
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA-------------FQLINE 125
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---- 217
L P + + + D A
Sbjct: 126 QHLEQL--------------------PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165
Query: 218 -ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
+ + + + RGDL++A + R + N + + ++ A
Sbjct: 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225
Query: 277 KLEGDINQGVAYYKKALY----YNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------ 326
++ GD + + N N+ A + +F+ A + E
Sbjct: 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285
Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
L +Y A AL +
Sbjct: 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 5e-09
Identities = 23/225 (10%), Positives = 55/225 (24%), Gaps = 23/225 (10%)
Query: 52 LSYANILRSRNKFVDALALYEIVLE--------KDSGNVEAHIGKGICLQMQNMGRLAFD 103
+ + IL ++ A E + + + + L A
Sbjct: 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156
Query: 104 SFSEAVKL-----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
S +++ Q G L A ++ + + K ++ ++
Sbjct: 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCY 214
++ G+ K + + N+ L +++ A
Sbjct: 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 276
Query: 215 EKA-----ALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLA 253
E+ +L + +Y G A L
Sbjct: 277 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 1e-18
Identities = 53/339 (15%), Positives = 100/339 (29%), Gaps = 73/339 (21%)
Query: 114 QNACAHTHCGILYKDEGR---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
A +LY+ +G ++ E KA A + LA V
Sbjct: 139 GYPEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICYVELATVYQK-------- 188
Query: 171 GNTQDGIQKYYEALKI-----DPHYAPAYYNLGVVY------SELMQYDTALGCYEKAAL 219
+ ++ E LK A V TA EK A
Sbjct: 189 ---KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244
Query: 220 ERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
P Y ++ ++ + + D+E + + + + A+ + + G V
Sbjct: 245 --PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN--GRAADQPRAELLLGKLYYE-GKWV 299
Query: 277 KLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAY--GEMLKFDM--AIVFYELAFH 328
D A+++KA A Y LG Y G + K A+ A
Sbjct: 300 PA--DAKAAEAHFEKA-------VGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA-- 348
Query: 329 FNPHCAE-----ACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379
A A + ++ + A Q+A + ++ + +
Sbjct: 349 -----ARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA--KAQDTPEANDLATQLEA 401
Query: 380 --VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+ ++++ +AA T A++ L L + G
Sbjct: 402 PLTPAQRAEGQRLVQQELAARGTLAQSTLQLHALQEEDG 440
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 4e-14
Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 39/235 (16%)
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKN 263
TA Y++ A Y+EA + I ++ A A Y A +
Sbjct: 19 TVTAQQNYQQLA--ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRA----------AAD 66
Query: 264 NMAIALTDLGT-----KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEML 314
A LG E + ++ + KKA + + + L + Y
Sbjct: 67 TSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLYLQYPHSFP 124
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSL 371
+ + EA ++Y+ + D VE A
Sbjct: 125 NVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICY 179
Query: 372 NNLGVVYTVQG---KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
L VY + + + +E + A V + D
Sbjct: 180 VELATVYQKKQQPEQQAELLKQMEAG--VSRGTVTAQRVDSVARVLGDATLGTPD 232
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 32/244 (13%)
Query: 190 YAPAYYNLGVVYSEL--MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-----DLE 242
Y+ A L + +AA + A +G + + +
Sbjct: 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHH 91
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302
A + ++ A + +A+ ++N + +A
Sbjct: 92 EAESLLKK--AFANGEGNTLIPLAMLYLQ-YPHSFP--NVNAQQQISQWQAAGY---PEA 143
Query: 303 MYNLGVAY-GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQ 358
+ Y + + L +Y + + + ++ +
Sbjct: 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203
Query: 359 MALSIKPNFSQSLNNLGVVYT----VQGKMD--AAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ + V G D A ++EK P ++ +L L
Sbjct: 204 AGV--SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP---ASWVSLAQLL 258
Query: 413 RDAG 416
D
Sbjct: 259 YDFP 262
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 20/201 (9%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVF 322
+ L + GD Y++ Y++A L + + A
Sbjct: 3 GLPDQRLANEALKRGDTVTAQQNYQQL--AELGYSEAQVGLADIQVGTRDPAQIKQAEAT 60
Query: 323 YELAFHFNPHCAEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
Y A A LG + +A + A +L L ++
Sbjct: 61 YRAA---ADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAML 115
Query: 378 YT--VQGKMD-AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Y + A + I + AA Y EA +LYR G+ +D E+ K +
Sbjct: 116 YLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN 173
Query: 435 SRNAGQNRLLAMNYINEGHDD 455
+ + L + + +
Sbjct: 174 TTDICYVELATVYQKKQQPEQ 194
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-18
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A + A+AY +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-16
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 394 AI-------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
AI A+AY +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 9e-13
Identities = 24/103 (23%), Positives = 36/103 (34%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ V +A A +G E + +Y K+L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A+ +LG + D + + +Y KA + + N Y E ++ E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 326 AFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
A A+A +G Y + A+ Y +L+
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-08
Identities = 13/74 (17%), Positives = 28/74 (37%)
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
LG + D A + +KA +PT N +Y + G + + E+
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 429 LKIDPDSRNAGQNR 442
+++ ++R +
Sbjct: 65 IEVGRENREDYRQI 78
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 34/122 (27%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A + +A +LDP N T+ +Y ++G + E KA+
Sbjct: 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR------------- 69
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
E + A AY +G Y + +Y A+ Y K+ E
Sbjct: 70 ---------------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
Query: 221 RP 222
Sbjct: 109 HR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-07
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 48 GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
GK AL N + F AL Y+ E D N+ + + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 105 FSEAVKLDPQN-------ACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
+A+++ +N A A+ G Y E + +A Y+K+L+ +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 3e-17
Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 37/224 (16%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
Y++ A A + + + GD + A ++ A AL
Sbjct: 5 PGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKA---------AAQGDGDAL 53
Query: 270 TDLGTKVKLEG----DINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLK--FDMAIV 321
L ++K+ D Q +KA+ L + AI
Sbjct: 54 ALLA-QLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAIT 110
Query: 322 FYELAFH--FNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLG 375
+ A + +A LG+IY ++ KA E ++ + S + G
Sbjct: 111 LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAG 169
Query: 376 VVY------TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+++ ++ A + + + + +
Sbjct: 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRISK 211
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 8e-17
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 23/186 (12%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIA 246
A Y L + Y A +KAA + +A + + D A
Sbjct: 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQ 74
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA--LYYNWHYADAMY 304
E+ AV + + +A L + D+ + + A + DA
Sbjct: 75 LAEK--AVEAGSKSGEIVLARVLVN-RQAGAT--DVAHAITLLQDAARDSESDAAVDAQM 129
Query: 305 NLGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD------RDNLDKAV 354
LG+ Y G A +++ + A G++++ N KA+
Sbjct: 130 LLGLIYASGVHGPEDDVKASEYFKGSSS-LSRTGYAEYWAGMMFQQGEKGFIEPNKQKAL 188
Query: 355 ECYQMA 360
++
Sbjct: 189 HWLNVS 194
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 31/175 (17%)
Query: 190 YAPAYYNLGVVYSE--LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLE 242
A L + Y A EKA + + N + D+
Sbjct: 49 DGDALALLAQLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVA 106
Query: 243 SAIACYER--CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
AI + + S A+ + + G D + Y+K + +
Sbjct: 107 HAITLLQDAARDSESDAAVDAQMLLGLIYAS-GVHGPE--DDVKASEYFKGSSSLS-RTG 162
Query: 301 DAMYNLGVAY----GEMLKFDM--AIVFYELAFHFNPHC----AEACNNLGVIYK 345
A Y G+ + ++ + A+ + ++ C C I K
Sbjct: 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS------CLEGFDTGCEEFDRISK 211
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 7/84 (8%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT---VQGKMDAAAEM 390
A L + + KA Q A +L L + Q A ++
Sbjct: 18 RRAQYYLADTWVSSGDYQKAEYWAQKA--AAQGDGDALALLAQLKIRNPQQADYPQARQL 75
Query: 391 IEKAIAANPTYAEAYNNLGVLYRD 414
EK A L + +
Sbjct: 76 AEK--AVEAGSKSGEIVLARVLVN 97
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 7e-17
Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 39/224 (17%)
Query: 214 YEKAALERPMYAEAYCNM--GVIYKNRGD---LESAIACYERCLAVSPNFEIAKNNMAIA 268
E P N Y GD L A + SP F A+ A+
Sbjct: 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALV 242
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+ + L ++
Sbjct: 243 --------------------DIVRHSQHPLDEKQLAALNTEIDNIVTLPE---------- 272
Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
+ + V + D++ + + ++ ++ + LG VY ++G AA
Sbjct: 273 -LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAA 330
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
+ A P Y +++ S+ + ++ L +
Sbjct: 331 DAYLTAFNLRPGANTLYWIENGIFQ--TSVPYVVPYLDKFLASE 372
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 2e-16
Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK--------DRDN 349
++ A L +G+ + A +P A ++ D
Sbjct: 199 NFYQAHDYL--LHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 256
Query: 350 LDKAVECYQMALSIK--PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
L +++ N S V V+GK D + + I I ++ Y
Sbjct: 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVL 315
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPD 434
LG +Y G A DAY + P
Sbjct: 316 LGKVYEMKGMNREAADAYLTAFNLRPG 342
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 3e-16
Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 18/204 (8%)
Query: 99 RLAFDSFSEAVKLDPQNACAHT-----HCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
K+ P T H +L+ D+ L A+E + + + P + A
Sbjct: 177 PWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR 236
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKIDPHYAPAYYNLGVVYSELMQYDTA 210
A+V + L + + L + + Y V + D +
Sbjct: 237 AEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES 296
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
++ M Y +G +Y+ +G A Y + P
Sbjct: 297 YQAINTG-IDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI-- 353
Query: 271 DLGTKVKLEGDINQGVAYYKKALY 294
+ + V Y K L
Sbjct: 354 -------FQTSVPYVVPYLDKFLA 370
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 18/160 (11%)
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLG-----VIYKDRDNLDKAVECYQMALSIKPN 366
+ L E PH N +++ D +L++A E + P
Sbjct: 172 KALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE 231
Query: 367 FSQSLNNLGVVYTV--------QGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAG 416
F+ + +V V + ++ A I+ + + Y V G
Sbjct: 232 FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
+ A + ++ N LL Y +G + +
Sbjct: 292 KTDESYQAINTGIDLEMSWLN---YVLLGKVYEMKGMNRE 328
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 2e-16
Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 65/286 (22%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+E+AA + IY+ R +L A + +
Sbjct: 33 FEEAA-------DLCVQAATIYRLRKELNLAGDSFLKAADYQ------------------ 67
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH- 332
K + + A+ E A H
Sbjct: 68 -----------------KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110
Query: 333 -----CAEACNNLGVIY-KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTV 380
A LG I D + KA++CY++A ++ + +
Sbjct: 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170
Query: 381 QGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
G+ A+++ K I + + + + G+ A A ++ DP
Sbjct: 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230
Query: 434 DSRNAGQNRLLA--MNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
+ ++ ++ L ++ +NEG ++L E +++ FMRL +
Sbjct: 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF-DNFMRLDKWKIT 275
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-13
Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 14/184 (7%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+Y+ L A +S+ KA E + K GN+ + +
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA-GNTYVEAYKCFKSGGNSVNAVDSLEN 102
Query: 183 ALKIDPHY------APAYYNLGVVY-SELMQYDTALGCYEKAAL------ERPMYAEAYC 229
A++I H A + LG + ++L Y A+ CYE A + + +
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ G A Y + + S +++ ++ G D
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222
Query: 290 KKAL 293
++
Sbjct: 223 QEGQ 226
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 4e-11
Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 21/191 (10%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHTHCGILYKDEGRLVEAAESYHKA 142
+++ LA DSF +A + + +K G V A +S A
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103
Query: 143 LSADPSYKPAAECLAIVLTDLGTSL-KLAGNTQDGIQKYYEALKI------DPHYAPAYY 195
+ A +LG L + I Y A + +
Sbjct: 104 IQIFTHRGQFRRG-ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 196 NLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLESAIACY 248
+ + QY A Y K L + + + G+ D +A
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222
Query: 249 ERCLAVSPNFE 259
+ + PNF
Sbjct: 223 QEGQSEDPNFA 233
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-16
Identities = 25/119 (21%), Positives = 46/119 (38%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ H NP A N G + + +A++ Y A+ P ++ +N YT
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+ A + E+ I PT+ + Y + A+D Y++ L +D + A
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 9e-16
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
+H +P LA+++ + G G+ ++ Y EA+K +P A Y N
Sbjct: 3 HHHHHHSHMNPD-------LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSN 55
Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
Y++L+++ AL E+ P + + Y + D A+ Y++ L +
Sbjct: 56 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115
Query: 257 NFEIAKNNMAIAL 269
+ + A + +
Sbjct: 116 SCKEAADGYQRCM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 20/121 (16%), Positives = 43/121 (35%)
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
++ + N A + N G + + A+ Y A NP A+ +N Y
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
A++ + + ++P F + A ++ +KA+ + + EA +
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 408 L 408
Sbjct: 124 Y 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 7/136 (5%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ + P A N G +GD A+ Y + +P +N A T L
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL- 63
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
+ + ++ + + A M + A+ Y+ A + C
Sbjct: 64 ------LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117
Query: 334 AEACNNLGVIYKDRDN 349
EA + + N
Sbjct: 118 KEAADGYQRCMMAQYN 133
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 20/101 (19%), Positives = 40/101 (39%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + A+ Y ++++ + + + + C +LA E ++L+P
Sbjct: 24 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
+T + +A + Y KAL D S K AA+
Sbjct: 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 18/80 (22%), Positives = 34/80 (42%)
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ + P+ + + N G +G A + +AI NP A+ Y+N Y
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 415 AGSISLAIDAYEQCLKIDPD 434
LA+ E+C++++P
Sbjct: 63 LLEFQLALKDCEECIQLEPT 82
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 9e-16
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
++ + G R KA++ Y ALSI P L+N Y+ G+ + AAE E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A +P Y++A++ LG+ D A +AYE+ ++ + + + R L
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-14
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 2/124 (1%)
Query: 145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
S P E + L G + I Y +AL I P N YS
Sbjct: 1 GPRSMAPTPE--SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS 58
Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
Q++ A E A + P Y++A+ +G+ + D + A YE+ + N
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 265 MAIA 268
+
Sbjct: 119 RGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 25/111 (22%), Positives = 41/111 (36%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+D + + G A ++ AI Y A P +N Y +KA E ++
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
A + P +S++ + LG+ A E EK I A G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 7/119 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
+ + G +Y A+ Y +A P N Y G E A E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
V P + A + + +A D+ D Y+K + + G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDM-------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 1/144 (0%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
+ L G + ++ + Y +AL + N AY + + A EL
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A +P ++A + LG+ D + A E Y+ + + N G + T + K++
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIE 129
Query: 386 AAAEMIEKAIAANPTYAEAYNNLG 409
A E A A G
Sbjct: 130 EANRGAEPPADDVDDAAGASRGAG 153
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 2/130 (1%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N +R ++ A+ LY L N + A + A +DP+
Sbjct: 19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNT 173
+ A + G+ D A E+Y K + A+ + A L + + + A
Sbjct: 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPP 138
Query: 174 QDGIQKYYEA 183
D + A
Sbjct: 139 ADDVDDAAGA 148
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-14
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
LK GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+P + + Y + E A YE L N K +
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-11
Identities = 20/90 (22%), Positives = 36/90 (40%)
Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
N+D A++CY A+ + P+ +N Y +G A E K + P + + Y+
Sbjct: 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
A YE+ LK + ++
Sbjct: 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-08
Identities = 17/109 (15%), Positives = 36/109 (33%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+ +KP++ + + + + A E+ + + L
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 7e-06
Identities = 18/100 (18%), Positives = 35/100 (35%)
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
S DAL Y ++ D N + + + + A++ + V L P +
Sbjct: 16 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 75
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ + R EA +Y + L + + E L +
Sbjct: 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 7/116 (6%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
G + G+++ A+ CY + + P+ + +N + A GD +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-------GDYQK 56
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340
K + + A + +F+ A YE + + L
Sbjct: 57 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 7e-04
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A +SEA+KLDP N +++ Y +G +A E K + P +
Sbjct: 23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG-------Y 75
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
+ +L+ ++ + Y E LK + + L
Sbjct: 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-14
Identities = 20/112 (17%), Positives = 35/112 (31%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AE G Y + + AV+ Y + P ++ +N A K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
AI +P + AY + A++ + D + N R +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-14
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+L G + ++ Y E +K P A Y N ++LM + A+ KA
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ P + AY + SA+ + + I
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 16/111 (14%), Positives = 33/111 (29%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+ G Y + A+ Y P A +N + +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
A+ PNF ++ + +A E ++ A + + +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS-LKLAGNTQDGIQKYYEALKID 187
+ A ++Y + + P A ++ + KL + + I +A++ D
Sbjct: 17 KSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKL-MSFPEAIADCNKAIEKD 68
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
P++ AY + +Y +AL + A + +
Sbjct: 69 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
M AE G Y + D +A+ Y + +P +N A AL L
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-------MSF 54
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
+ +A KA+ + ++ A A + ++ A+ + A + + +
Sbjct: 55 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+ A+ Y + P A Y N AIA + + PNF A
Sbjct: 19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
A A + + + A + + +
Sbjct: 79 ATAQIAV-------KEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 13/104 (12%), Positives = 34/104 (32%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+++ + +A+ Y ++++ + + + L A ++A++ DP
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
A+ A E+ A + D + I
Sbjct: 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 4e-13
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 381 QGKMDAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439
QG ++ A + +E+ + P EAY +G YR G A++ Y+ ++++PDS
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72
Query: 440 QNRLL--AMNYINEGHDDKLFEAH 461
+++ +N+ N+ ++L H
Sbjct: 73 ARKMVMDILNFYNKDMYNQLEHHH 96
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ AL E+ P+ EAY MG Y+ GD + A+ Y+ +
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
++P+ + + + +N +Y K +Y
Sbjct: 63 ELNPDSPALQA-----------RKMVMDILN----FYNKDMY 89
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
L G+ ++ +Q E L+ +P AYY +G Y +L + AL Y+ A
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACY 248
P R + + Y
Sbjct: 65 NPDSPALQ--------ARKMVMDILNFY 84
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-11
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
++ +++ A++ + L +P ++ +G Y G A + AI
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 398 NPTYAEAYNN 407
NP
Sbjct: 65 NPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQ 358
+ N G + A+ E P EA +G Y+ + KA+ YQ
Sbjct: 7 IKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59
Query: 359 MALSIKPNF 367
A+ + P+
Sbjct: 60 SAIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 279 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+GDI + ++ L +A Y +G AY ++ + A+ Y+ A NP
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL- 71
Query: 338 NNLGVIYKDRDNLDKAVECYQ 358
+ R + + Y
Sbjct: 72 -------QARKMVMDILNFYN 85
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-07
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEA 108
D L L ++ +AL E L+ + EA+ G + + A +++ A
Sbjct: 2 DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143
++L+P + +++ Y+K +
Sbjct: 62 IELNPDSPALQAR--------KMVMDILNFYNKDM 88
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 93 QMQNMGRL--AFDSFSEAVKLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
++ N G + A + E ++ +P A+ G Y+ G +A +Y A+ +P
Sbjct: 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68
Query: 150 KPAAE 154
PA +
Sbjct: 69 -PALQ 72
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-06
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
N+GD+E+A+ E L P + A M A LG D + +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-------DWQKALNN 57
Query: 289 YKKALYYNWHYADA 302
Y+ A+ N
Sbjct: 58 YQSAIELNPDSPAL 71
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 6e-13
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 162 DLGTSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
+L K GN ++ Y EA+K DP A Y N ++LM++ AL
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ + + Y + A YE L V P+ E A+ +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Query: 328 HFNPHCAEACNNLG-VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
+ NP A+ N G +K D A+ Y A+ P + +N T +
Sbjct: 7 YINPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQR 65
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
A + + I + + + Y S A AYE L++DP + A +
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 8e-08
Identities = 20/118 (16%), Positives = 37/118 (31%)
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
+ Y N A N G Y + + A+ Y A +P A +N
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+A++ + + F + + A E A+ +P+ EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
+ A P A+ N G Y +GD +A+ Y + P I +N A LT L
Sbjct: 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-- 60
Query: 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334
+ + + + + + M ++ A YE A +P
Sbjct: 61 -----MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
Query: 335 EACNNL 340
EA +
Sbjct: 116 EAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 5e-06
Identities = 20/104 (19%), Positives = 37/104 (35%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + A+ Y +++D N + + CL + A D ++LD +
Sbjct: 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ +A +Y AL DPS + A E +
Sbjct: 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 7e-13
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
Y + Y G +A+ YE + V P+ + AK
Sbjct: 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-12
Identities = 18/106 (16%), Positives = 38/106 (35%)
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
+ A++ Y A+ + P+ + N + Y A +AI + Y + Y
Sbjct: 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89
Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
G A+ YE +K+ P ++A + + ++
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 9/151 (5%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
E A AE Y D E+AI Y + + ++P+ I N ++A
Sbjct: 3 EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-- 60
Query: 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334
+ +A+ + Y Y + + KF A+ YE PH
Sbjct: 61 -----ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115
Query: 335 EACNNLGVIYK--DRDNLDKAVECYQMALSI 363
+A K + ++A+ + S+
Sbjct: 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Y+ A+ Y +A P A Y N + Y A+ R + + +
Sbjct: 28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
A + L G + Y+ +
Sbjct: 88 AASNMAL-------GKFRAALRDYETVV 108
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 5/130 (3%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
D + +Y +A+ N A N +AY + A+ A + +
Sbjct: 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
A+ Y+ + +KP+ + + + E+AIA +
Sbjct: 86 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-----ERAIAGD 140
Query: 399 PTYAEAYNNL 408
++L
Sbjct: 141 EHKRSVVDSL 150
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 15/104 (14%), Positives = 30/104 (28%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + +A+ Y +E + N + + + A + A++LD +
Sbjct: 21 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ G+ A Y + P K A
Sbjct: 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-11
Identities = 19/114 (16%), Positives = 40/114 (35%)
Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+A CY A++ P + N + Y + + A +A+ + +A+ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462
G + S AI ++ + + R + + + I + E R
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 166 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
LK GN + Y A+ +P A Y N + Y ++ Q + AL +A
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+A+ +G + AIA +R +++
Sbjct: 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS-LKLAGNTQDGIQKYYEA 183
L+ + EAA Y +A++ +P +A+ T+ LK+ + + A
Sbjct: 19 LFV-GRKYPEAAACYGRAITRNPL-------VAVYYTNRALCYLKM-QQPEQALADCRRA 69
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
L++D A++ LG E+ YD A+ ++A
Sbjct: 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
++ ++ +A ++A
Sbjct: 84 GQCQLEM-------ESYDEAIANLQRAY 104
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 17/85 (20%), Positives = 30/85 (35%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANP 399
G D A +++A +
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/88 (20%), Positives = 34/88 (38%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPN 366
LG + ++ D+A+ Q A S+
Sbjct: 82 FLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 19/98 (19%), Positives = 34/98 (34%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N L K+ +A A Y + ++ + + +C A A++LD Q+
Sbjct: 17 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
AH G + EA + +A S +
Sbjct: 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 3e-11
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+ + LG +T ++ + + +LG + Q A Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
A P + Y + ++ ++GD + I Y R +AV F A N+
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 58.1 bits (139), Expect = 8e-09
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392
C +LG I + R+ +A Y+ A + P+ Q N L ++ + +G
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
++IA + A NL A E K + Y+++
Sbjct: 211 RSIAVKFPFPAASTNLQKALSKALE-----SRDEVKTKWGVSDFIKAFIKFHGHVYLSKS 265
Query: 453 HDD 455
+
Sbjct: 266 LEK 268
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 3e-08
Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 7/186 (3%)
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
+ + LG + + V + Y + + +LG + A +Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178
Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P + N L ++ + + + Y ++++K F + NL + K
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS---KALE 235
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYR--DAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
+ + ++ + G +Y +S + E+ K + +L+
Sbjct: 236 SRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLV 295
Query: 445 AMNYIN 450
+ IN
Sbjct: 296 HVTVIN 301
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 2e-06
Identities = 18/132 (13%), Positives = 37/132 (28%)
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
K + + + H + P + L LG + T Y A ++
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
P Y L ++ S + T + Y ++ + + A N+ + +
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241
Query: 247 CYERCLAVSPNF 258
F
Sbjct: 242 TKWGVSDFIKAF 253
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 42.7 bits (99), Expect = 5e-04
Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 15/183 (8%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
G + +N A + A +L P N + IL +G + Y ++++
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207
+ PAA + T+ G+ + +A + L +L
Sbjct: 219 F-PAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI----KFHGHVYLSKSLEKLSPLR 273
Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+ +++ ++ ++ ++ VI + S E +
Sbjct: 274 EKLEEQFKELLFQKAFNSQQLVHVTVI---------NLFQLHHLRDFSNETEQHTYSQDE 324
Query: 268 ALT 270
L
Sbjct: 325 QLC 327
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 1e-10
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 1/131 (0%)
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ R +A CY A++ P + N + Y + + A +A+ + +
Sbjct: 15 FVGRK-YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463
A+ LG + S AI ++ + + R + + + I + E R
Sbjct: 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRI 133
Query: 464 WGKRFMRLYSQ 474
+ + Y
Sbjct: 134 HQESELHSYLT 144
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 166 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
LK GN + Y A+ +P A Y N + Y ++ Q + AL +A
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+A+ +G + AIA +R +++
Sbjct: 66 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 17/92 (18%), Positives = 31/92 (33%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
G D A +++A + +
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A+ G A ACY R + +P + N A+ + Q
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-------QQPEQ 56
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
+A ++AL + A + LG EM +D AI + A+
Sbjct: 57 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 9e-05
Identities = 19/103 (18%), Positives = 34/103 (33%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N L K+ +A A Y + ++ + + +C A A++LD Q
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
+ AH G + EA + +A S +
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
++ ++ +A ++A
Sbjct: 79 GQCQLEM-------ESYDEAIANLQRAY 99
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 18/94 (19%), Positives = 35/94 (37%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
LG + ++ D+A+ Q A S+ +
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 349 NLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ A+ Y AL + N + D A KAI + +A
Sbjct: 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
G + A+ ++C+ ++P ++
Sbjct: 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 170 AGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
G+ + Y +AL +D A + N + +L YD A KA + +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
A + G L+ A+ +RC+++ P ++ + +
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYY 181
L+K G A +Y +AL D + + A A LKL + +
Sbjct: 38 LFK-CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH------LKL-EDYDKAETEAS 89
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+A++ D A Y +L + D A+ ++
Sbjct: 90 KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 10/129 (7%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTD 271
+ A E G GD A+A Y + L + + + N A
Sbjct: 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAAC--- 74
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
+KL D ++ KA+ + A+Y A ++ + D A++ + P
Sbjct: 75 ---HLKL-EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130
Query: 332 HCAEACNNL 340
L
Sbjct: 131 KNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DNLDKAVECYQMALSIKPNF 367
+ A+ Y A + + V++++R ++ DKA A+
Sbjct: 43 DYGGALAAYTQALGLDATPQDQA----VLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
++L G++D A +++ ++ P L
Sbjct: 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 2e-10
Identities = 76/507 (14%), Positives = 154/507 (30%), Gaps = 107/507 (21%)
Query: 410 VLYRDAGS--ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 467
++ GS +A+D CL + + + ++N + + +
Sbjct: 154 LIDGVLGSGKTWVALDV---CLSYKVQCKMDFK-----IFWLNLKNCNS----PETVLEM 201
Query: 468 FMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVV---VYS 524
+L Q + T + + HS+ + L Y+N +V V +
Sbjct: 202 LQKLLYQIDP-NWTSRSDHS-----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 525 A-VVKA-DAK-----TIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 577
A A + T RF++ +D + ++ +L++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDCR 314
Query: 578 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQ--KHV--EELIRL 633
L P +++ I +S+ D T KHV ++L +
Sbjct: 315 PQ-DLPREVLTTNPRRLSIIA---------------ESIRDGLATWDNWKHVNCDKLTTI 358
Query: 634 PECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQV-WARILCAVPNSRLV 692
E L E F F A I +L + W ++ + +V
Sbjct: 359 IESSLNVLEPAE---------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-MVVV 408
Query: 693 VKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM-QAYSLMDISLDTFPYA 750
K K + ++ + LE L+V L L H + Y++ TF
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEYAL-HRSIVDHYNI----PKTFDSD 462
Query: 751 GTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-- 808
Y ++H +G HL E + L + D
Sbjct: 463 DLIPPYLDQY-----------FYSH-IG---------HHLKNIEHPERMTLFRMVFLDFR 501
Query: 809 --------VTALANLRMSLRDLMS-----KSPVCDGQNFALGLESTYRNMWHRYCKGDVP 855
+ N S+ + + K +CD L + + + + ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK-IEENLI 560
Query: 856 SLKRMEMLQQQVVSEEPSKFSEPTKII 882
K ++L+ +++E+ + F E K +
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 166 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
K GN+ ++ + Y + + P Y N + +L +Y A+ ++
Sbjct: 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCL-AVSPNFEIAKNN 264
+ Y+ + A+ + + V E +
Sbjct: 66 RYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
E G + +AV CY ++ +P +N + G+ A +M ++
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-IDPDSRNAGQN 441
+ T + YR A+ + + + +D ++
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPA----AECLAIVLTDLGTSLKLAGNTQDGIQKY 180
L+K +G EA Y + ++A P A L +KL G IQ
Sbjct: 14 LFK-QGLYREAVHCYDQLITAQPQNPVGYSNKAMAL----------IKL-GEYTQAIQMC 61
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
+ L+ + Y L A+G + +E E Y
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGY 108
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Y A+ CY++ +P Y N + G+ AI ++ L + E
Sbjct: 19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ L G + V +
Sbjct: 79 KLQYR-LELAQGAVGSVQIPVVEVDELP 105
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 1/108 (0%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ G + + + A+ Y+ P +N + +A++ Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
L + Y A ++ + E Y+
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
E G +G A+ CY++ + P + +N A+AL L G+ Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-------GEYTQ 56
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
+ ++ L Y + Y + A+ ++
Sbjct: 57 AIQMCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIP 97
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 1e-09
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----------RDNLDKAVECYQM 359
+ +L F+ E + NP A+ G + + + + +A+ ++
Sbjct: 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE 71
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKM-----------DAAAEMIEKAIAANPTYAEAYNNL 408
AL I P +++ +G YT + D A + ++A+ P +L
Sbjct: 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131
Query: 409 GVLYRD 414
+ +
Sbjct: 132 EMTAKA 137
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 3e-09
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 26/138 (18%)
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD---INQGVAYYKKALYYNWH 298
E E +P L +L + I + + +++AL +
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+A++ +G AY AF P EA + N D A + +Q
Sbjct: 79 KDEAVWCIGNAY------------TSFAF-LTPDETEA----------KHNFDLATQFFQ 115
Query: 359 MALSIKPNFSQSLNNLGV 376
A+ +P+ + L +L +
Sbjct: 116 QAVDEQPDNTHYLKSLEM 133
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 2e-08
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI----------EKAIAANPT 400
++ + + P + +L G V + + ++ E+A+ +P
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 401 YAEAYNNLGVLYRDAGSI-----------SLAIDAYEQCLKIDPDS 435
EA +G Y + LA ++Q + PD+
Sbjct: 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 3e-08
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 17/128 (13%)
Query: 126 YKDEGRLV---EAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQK 179
+ R++ + + ++P VL +L + Q+ I K
Sbjct: 9 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK 68
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQ-----------YDTALGCYEKAALERPMYAEAY 228
+ EAL IDP A + +G Y+ +D A +++A E+P
Sbjct: 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128
Query: 229 CNMGVIYK 236
++ + K
Sbjct: 129 KSLEMTAK 136
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-09
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 25/171 (14%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNT 173
+H H E + A+ + + E + + G
Sbjct: 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDE-------EKVQSAFDIKEEGNEFFKKNEI 54
Query: 174 QDGIQKYYEALKIDPHY----------------APAYYNLGVVYSELMQYDTALGCYEKA 217
+ I KY EAL H NL Y++ Y A+ K
Sbjct: 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+A +GV G LE A + +++PN +N+ +
Sbjct: 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 349 NLDKAVECYQMALSIKPNFSQS----------------LNNLGVVYTVQGKMDAAAEMIE 392
+++A+ Y+ AL + + NL Y A +
Sbjct: 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
K + + +A LGV G + A + + ++P++ +
Sbjct: 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 26/136 (19%)
Query: 238 RGDLESAIACYERCLAVSPNFEIAK----------------NNMAIALTDLGTKVKLEGD 281
+ ++ AI Y+ L + E N+A K + D
Sbjct: 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC------YNKNK-D 103
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ + + K L + + A+Y LGVA + A A NP+ + N+
Sbjct: 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163
Query: 342 VI---YKDRDNLDKAV 354
+ K+ DK
Sbjct: 164 LCVNKLKEARKKDKLT 179
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-08
Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 25/143 (17%)
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
A+ Y KA ++ + + + + A N +
Sbjct: 11 LKKAIQYYVKACELN--EMFGCLSLVSNSQI--NKQKLFQYLSK--ACELNSGNGCRFLG 64
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFD--MAIVF 322
+ G VK D+ + YY KA N D LG G+ + + A+
Sbjct: 65 DFY-ENGKYVKK--DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKT 119
Query: 323 YELAFHFNPHC----AEACNNLG 341
+E A C +AC L
Sbjct: 120 FEKA------CRLGSEDACGILN 136
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-06
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 12/86 (13%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAA 388
C +L + N K + A + N LG Y GK + AA
Sbjct: 27 MFGCLSLVSNSQI--NKQKLFQYLSKA--CELNSGNGCRFLGDFY-ENGKYVKKDLRKAA 81
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRD 414
+ KA + LG
Sbjct: 82 QYYSKA--CGLNDQDGCLILGYKQYA 105
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 4e-08
Identities = 16/158 (10%), Positives = 43/158 (27%), Gaps = 19/158 (12%)
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGV 342
++ + Y + + + ++ I+ + + N +
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQS-------LNNLGVVYTVQGKMDAAAEMIEKAI 395
IY + L K ++ ++ L + N + + + + + KAI
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Query: 396 A------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
+ + Y G R I+ +
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 5e-08
Identities = 20/166 (12%), Positives = 44/166 (26%), Gaps = 13/166 (7%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA------LERPMYAEAYCN 230
K E + Y + + + Y+ + +K ++
Sbjct: 101 ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+ IY G L+ I +E+ L + + + L+ + +
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220
Query: 291 KAL------YYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFHF 329
KA+ Y G ++ + Y+ A F
Sbjct: 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
+Y + G L + + + + L + E V + +L L ++ +
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216
Query: 178 QKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+ +A++I YY G +L + + K A
Sbjct: 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 36/220 (16%)
Query: 78 DSGNVEAHIGKG----------ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127
D + IG+G +Q G + V L P A
Sbjct: 61 DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSI------VYLKPSYAFGSVGKEKFQI 114
Query: 128 DEGRLVEA-AESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNTQDGIQKYYEAL 184
++ + + + E L + GT G + + +Y + +
Sbjct: 115 PPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIV 174
Query: 185 KIDPHY---------------APAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAY 228
+ ++ NL + + +L + A+ KA LE +
Sbjct: 175 SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA-LELDSNNEKGL 233
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
G + D E A A +++ L + PN + AK +A+
Sbjct: 234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNFS 368
+ F+ A +E+ + G +Y +A+ Y+ +S + +FS
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 369 QS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
NL + + AA E KA+ + + + G +
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244
Query: 417 SISLAIDAYEQCLKIDPDSRNA 438
LA +++ L++ P+++ A
Sbjct: 245 DFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 19/167 (11%)
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
L ++ A +E + E+ + G +Y G + A+ Y++ ++
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYK------------KALYYNWHYADAMYNLGVAY 310
N A L L N + + K KAL + + + G A+
Sbjct: 185 NEEAQKAQALRLASHL----NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240
Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---YKDRDNLDKAV 354
+ F++A ++ P+ A L V + + +K +
Sbjct: 241 LAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 287
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-07
Identities = 20/153 (13%), Positives = 38/153 (24%), Gaps = 40/153 (26%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
G EAA + +A+ + P EA
Sbjct: 23 VAGEYDEAAANCRRAMEISHTMPP-----------------------------EEAFDHA 53
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE-----------AYCNMGVIYK 236
A + L + L +D AL +KA E A + +
Sbjct: 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALD 113
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
G A+ +++ + + + +
Sbjct: 114 GLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 9e-05
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 32/132 (24%)
Query: 225 AEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFE------------IAKNNMAIALT 270
AY + + G+ + A A R + +S +A AL
Sbjct: 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWH-----------YADAMYNLGVAYGEMLKFDMA 319
L ++ + KAL+Y + A+Y+ +A + + A
Sbjct: 69 GLR-------SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEA 121
Query: 320 IVFYELAFHFNP 331
+ ++
Sbjct: 122 MPEFKKVVEMIE 133
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 7e-07
Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ L + L + + AL + + + ++ + + K CL LA + +
Sbjct: 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA 64
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
N+ + + + + L+A+P A +L
Sbjct: 65 TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA-------CELAVQ 117
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212
G ++ ++ + LK++ G V M +ALG
Sbjct: 118 YNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALG 158
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-05
Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 1/148 (0%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ + + + A+ + + + + A E
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLAT 65
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
+ S + Q + +E+ +AANP E L V Y G
Sbjct: 66 IPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125
Query: 420 LAIDAYEQCLKIDPD-SRNAGQNRLLAM 446
A++ LK++ + + +
Sbjct: 126 EALELLWNILKVNLGAQDGEVKKTFMDI 153
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 28/135 (20%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
L+ + EA ++Y AL+ +L E +
Sbjct: 21 LFV-QKDYKEAIDAYRDALT-----------------------RLDTLILREKPGEPEWV 56
Query: 185 KIDPHYAPAYYNLGVVYSELMQYDTALG-CYEKAALER-PMYAEAYCNMGVIYKNRGDLE 242
++D P Y N+ Y + A E L+R +A L+
Sbjct: 57 ELDRKNIPLYANMSQCYLNIGDLHEAEETSSE--VLKREETNEKALFRRAKARIAAWKLD 114
Query: 243 SAIACYERCLAVSPN 257
A + L P
Sbjct: 115 EAEEDLKLLLRNHPA 129
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 18/113 (15%)
Query: 349 NLDKAVECYQMALSIKPNFSQS------------------LNNLGVVYTVQGKMDAAAEM 390
+ +A++ Y+ AL+ N+ Y G + A E
Sbjct: 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85
Query: 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
+ + T +A A + A + + L+ P + + +
Sbjct: 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 9e-06
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 15/143 (10%)
Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNF 367
+ F+ A +E+ A G +Y +AV Y +S +
Sbjct: 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL 304
Query: 368 SQS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
S+ NL + Y + A E +KA+ + + G
Sbjct: 305 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 364
Query: 416 GSISLAIDAYEQCLKIDPDSRNA 438
A +E+ L+++P ++ A
Sbjct: 365 NEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGV 199
A ++ + GT G + +Y + + A+ NL +
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325
Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
Y +L +Y A+ C +KA + G + ESA +E+ L V+P +
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
Query: 260 IAKNNMAI 267
A+ +++
Sbjct: 386 AARLQISM 393
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDL 163
+ A G +Y G+ ++A Y K +S ++ K + L +L
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 164 G-TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LKL ++ +AL +D Y G + ++++A G +EK
Sbjct: 324 AMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 33/241 (13%), Positives = 59/241 (24%), Gaps = 26/241 (10%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
+ D F+E D A + + A + + + I +
Sbjct: 25 SLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQL------SGSVQISM 78
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
+ L + + G D L I +A G Y A+ E A +
Sbjct: 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG-------NYADAMEALEAAPVA 131
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLGTKVKL 278
+ A+ V+Y I + F A +A +L
Sbjct: 132 GSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL---- 186
Query: 279 EGDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
+ +A + L +A A+ E +P
Sbjct: 187 ---FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKV 243
Query: 336 A 336
A
Sbjct: 244 A 244
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 22/220 (10%), Positives = 46/220 (20%), Gaps = 36/220 (16%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ E Y G E A ER + +S +
Sbjct: 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFL------------- 248
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
+ +Y M V YG++ + F+
Sbjct: 249 ----------------------SLYYGLVMDEEAV-YGDLKRKYSMGEAESAEKVFSKEL 285
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
N + L+ + + + + + Y G +
Sbjct: 286 DLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
+ +P + G A +++ K
Sbjct: 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSR 385
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
Y + Y G +A+ YE + V P+ + AK
Sbjct: 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 21/105 (20%), Positives = 38/105 (36%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
AI + Y + Y G A+ YE +K+ P ++A
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 17/156 (10%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A V + ++ A+ G + L++A++ Y+M
Sbjct: 145 PMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEM 204
Query: 360 ALSI---KPNFSQS--------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
A++ F N+ + D A +
Sbjct: 205 AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264
Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+A G + G + A D + + K PD +
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----------------PAYYNL 197
A G SL ++ +Q+Y A+ P + N+
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+L +YD A+G E +A G G ++SA + + +P+
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 258 FEIAKNNMAIA 268
+ + +
Sbjct: 297 DKAIRRELRAL 307
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 8e-04
Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 12/150 (8%)
Query: 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143
A + + + + + V+ A G E +L EA + Y A+
Sbjct: 147 ADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAI 206
Query: 144 S---------ADPSYKPAAECLAIVL-TDLG-TSLKLAGNTQDGIQKYYEALKIDPHYAP 192
+ Y+ A + ++ +KL + I L +
Sbjct: 207 AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL-KRYDEAIGHCNIVLTEEEKNPK 265
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERP 222
A + G +EL Q D+A + KA P
Sbjct: 266 ALFRRGKAKAELGQMDSARDDFRKAQKYAP 295
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 10/210 (4%)
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY-------Y 289
+ + YE+CL V + A L + +GD+N + Y
Sbjct: 28 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87
Query: 290 KKALYYNWHYADAMYNLGVAYGEML-KFDMAI-VFYELAFHFNPHCAEACNNLGVIYKDR 347
++A+ +Y Y E K++ ++ L + +
Sbjct: 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147
Query: 348 DNLDKAVECYQMAL-SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
+ + ++ A + + + Y A ++ E + E
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 207
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436
+ +E+ L
Sbjct: 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 69
Query: 441 N 441
Sbjct: 70 Q 70
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 32/194 (16%)
Query: 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA-------ESY 139
G G+ ++N+ E P C CG L + + + +
Sbjct: 155 GMGVAKILENVE-----VKGEK----PAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDF 205
Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL--------------- 184
+ D ++ L ++G + + N + I+KY + L
Sbjct: 206 PEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG 265
Query: 185 -KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
K+ P N+G ++ + A+ +A P +A ++ + +
Sbjct: 266 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQ 325
Query: 244 AIACYERCLAVSPN 257
A+A ++ ++P
Sbjct: 326 ALADLKKAQEIAPE 339
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 921 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-54 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-37 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-36 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-29 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-39 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-36 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-35 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-29 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-29 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-26 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 9e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-06 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 6e-27 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-18 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-11 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-11 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 6e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-26 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 7e-25 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-19 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-17 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-26 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 6e-25 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-12 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-11 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-05 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-21 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 3e-19 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-15 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 3e-14 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 5e-06 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 8e-19 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-15 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-10 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 4e-18 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 7e-09 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 4e-08 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-17 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 6e-17 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-15 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 7e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-15 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-14 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-08 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-13 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 6e-11 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 8e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 6e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-12 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-11 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-10 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 9e-10 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 6e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 7e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 3e-11 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 4e-07 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-05 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 0.003 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 6e-11 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 5e-10 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 9e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 0.002 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 8e-11 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 4e-09 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 7e-09 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 4e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-10 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 5e-05 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 4e-10 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-10 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 7e-09 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 1e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 9e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-10 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-05 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 3e-08 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 1e-04 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 7e-07 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 2e-06 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 9e-04 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 9e-07 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 3e-04 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 0.001 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 3e-04 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 6e-04 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.001 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.002 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.004 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.001 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 190 bits (483), Expect = 6e-54
Identities = 98/392 (25%), Positives = 166/392 (42%), Gaps = 34/392 (8%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+ A+ F A + ++ N + + + A+K
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+P A A+++ G +YK+ G+L EA E Y AL P + LA L G
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 172 NTQDG---------------------------IQKYYEALKIDPHYAPAYYNLGVVYSEL 204
Y +A++ P++A A+ NLG V++
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
+ A+ +EKA P + +AY N+G + K + A+A Y R L++SPN + N
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324
+A + G I+ + Y++A+ H+ DA NL A E A Y
Sbjct: 243 LACVYYEQG-------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384
A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QGK+
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
A ++AI +PT+A+AY+N+G ++
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 142 bits (358), Expect = 3e-37
Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 9/322 (2%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+L AG+ + + + + +P L ++ + + D + A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA-------ALVAA 114
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
GD+ V Y AL YN +LG + + + A Y A P+ A A +N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
LG ++ + + A+ ++ A+++ PNF + NLG V D A +A++ +P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459
+A + NL +Y + G I LAID Y + +++ P +A N LA +G + +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN--LANALKEKGSVAEAED 292
Query: 460 AHRDWGKRFMRLYSQYTSWDNT 481
+ + + N
Sbjct: 293 CYNTALRLCPTHADSLNNLANI 314
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 137 bits (346), Expect = 9e-36
Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 14/260 (5%)
Query: 90 ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
L+ A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202
Query: 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209
A +LG LK A + Y AL + P++A + NL VY E D
Sbjct: 203 LDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329
+ G +I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 316 REQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Query: 330 NPHCAEACNNLGVIYKDRDN 349
+P A+A +N+G K+ +
Sbjct: 369 SPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (295), Expect = 4e-29
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
++ N+L+ F A+A Y L + H Q + LA D++ A++L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
P A+ + K++G + EA + Y+ AL P++ + LA + + G
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------- 319
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
N ++ ++ Y +AL++ P +A A+ NL V + + AL Y++A P +A+AY NM
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 232 GVIYKNRGD 240
G K D
Sbjct: 380 GNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.5 bits (158), Expect = 1e-11
Identities = 19/196 (9%), Positives = 42/196 (21%)
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
L G +AA + P L ++ + + +K +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGY 492
P A N + + H K + + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 493 VSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG 552
+ Y + + L ++ A +T G + G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 553 IDEKKVAAMVREDKID 568
+ + +D
Sbjct: 184 EIWLAIHHFEKAVTLD 199
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 150 bits (379), Expect = 4e-39
Identities = 32/244 (13%), Positives = 70/244 (28%), Gaps = 25/244 (10%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
Q +A + + V++ Y+K + YA ++
Sbjct: 6 AQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN 62
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY- 295
+ ++ I + N ++ L + +Y + L
Sbjct: 63 HA--FKNQITTLQGQAKNRANPNRSEVQAN-----------LSLFLEAASGFYTQLLQEL 109
Query: 296 ------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
+ LG+ + + + + C +LG I + R+
Sbjct: 110 CTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRNQ 167
Query: 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
+A Y+ A + P+ Q N L ++ + +G ++IA + A NL
Sbjct: 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227
Query: 410 VLYR 413
Sbjct: 228 KALS 231
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 142 bits (358), Expect = 2e-36
Identities = 37/271 (13%), Positives = 84/271 (30%), Gaps = 20/271 (7%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI-- 267
+ +A + + ++ ++ +R L+ Y++ L + + K
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61
Query: 268 --ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A + T ++ + + + A + +
Sbjct: 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF----------YTQLLQELCT 111
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
F+ + C + LG+I + + V+ + L +LG + + +
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTS 169
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A A P+ + YN L +L G I Y + + + A N A
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
Query: 446 MNYINEGHDD-KLFEAHRDWGKRFMRLYSQY 475
++ E D+ K D+ K F++ +
Sbjct: 230 LSKALESRDEVKTKWGVSDFIKAFIKFHGHV 260
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 139 bits (350), Expect = 3e-35
Identities = 42/324 (12%), Positives = 93/324 (28%), Gaps = 31/324 (9%)
Query: 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192
+++A+ +A + A V T L Y + L D YA
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQ---ALQ-------DLYQKMLVTDLEYAL 52
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAA--LERPMYAEAYCNM-GVIYKNRGDLESAIACYE 249
+++ + + + A P +E N+ + G +
Sbjct: 53 DKKVEQDLWNHA--FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC 110
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
V + + + I + V + Y + +LG
Sbjct: 111 TVFNVDLPCRVKSSQLGIISNKQT-------HTSAIVKPQSSSCSYI--CQHCLVHLGDI 161
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
+ A +Y A P + N L ++ + + + Y ++++K F
Sbjct: 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221
Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL-GVLYR--DAGSISLAIDAYE 426
+ NL + + + + +A+ G +Y +S + E
Sbjct: 222 ASTNLQKALSKALESRDEVKTKW----GVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277
Query: 427 QCLKIDPDSRNAGQNRLLAMNYIN 450
+ K + +L+ + IN
Sbjct: 278 EQFKELLFQKAFNSQQLVHVTVIN 301
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (305), Expect = 1e-29
Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 11/215 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + SR D Y+ +L D Q++ AF + ++ +
Sbjct: 27 AEVWTSRQALQDL---YQKMLVTDLEYALDK------KVEQDLWNHAFKNQITTLQGQAK 77
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N + L A+ Y + L + + + LG +T
Sbjct: 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS 137
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
++ + + +LG + Q A Y AA P + Y + ++
Sbjct: 138 AIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
++GD + I Y R +AV F A N+ AL
Sbjct: 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 118 bits (295), Expect = 2e-29
Identities = 29/321 (9%), Positives = 72/321 (22%), Gaps = 29/321 (9%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+A + Y+ A + + + + ++ + L +P +A
Sbjct: 13 QAEAKRLEREQKLKLYQSATQ-------AVFQKRQAGELDESVLELTSQILGANPDFATL 65
Query: 194 YYNLGVVYSEL----------MQYDTALGCYEKAALERPMYAEAYCNMG--VIYKNRGDL 241
+ V L LG E P + + + +
Sbjct: 66 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
+ R L + + + +A+ + N+
Sbjct: 126 ARELELCARFLEADERNFHCWDYRR------FVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361
+ + ++ + L + E N D D++ Y L
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA----FFTDPNDQSAWFYHRWL 235
Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
+ TV + + +++ N L
Sbjct: 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 295
Query: 422 IDAYEQCLKIDPDSRNAGQNR 442
+ + +DP +
Sbjct: 296 LQYFSTLKAVDPMRAAYLDDL 316
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 109 bits (272), Expect = 2e-26
Identities = 29/291 (9%), Positives = 72/291 (24%), Gaps = 17/291 (5%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQKYY 181
+ E + L A+P + C VL L + + A + +
Sbjct: 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 97
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYD--TALGCYEKAA-LERPMYAEAYCNMGVIYKNR 238
L+++P +++ + S L + + L + + + V +
Sbjct: 98 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
+A + + + + + + + L L +
Sbjct: 158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL-------HPQPDSGPQGRLPENVLLK 210
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+ + N D + FY C + ++ + Q
Sbjct: 211 ELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQ 266
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
++ L + A +P A ++L
Sbjct: 267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.6 bits (117), Expect = 9e-07
Identities = 7/101 (6%), Positives = 17/101 (16%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
L + + Y L + + + + E
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
+ E + + + DP
Sbjct: 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 310
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.9 bits (110), Expect = 7e-06
Identities = 11/147 (7%), Positives = 37/147 (25%), Gaps = 11/147 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ +L + D+ + +E + + + + +
Sbjct: 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAE 240
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+E+ + + + + + L +L +
Sbjct: 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWC-------LLTIILLMRALDPLLYEK 293
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVY 201
+ +Q + +DP A +L +
Sbjct: 294 ETLQYFSTLKAVDPMRAAYLDDLRSKF 320
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (275), Expect = 6e-27
Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 13/242 (5%)
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
+ + Y + + E A + ++ + + L L
Sbjct: 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------K 92
Query: 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340
D+++ + Y + ++ V + + F + + A +
Sbjct: 93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 152
Query: 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE------KA 394
+ ++ D ++ L + N V + + A + +
Sbjct: 153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454
I P A+N L + +D G +S + Q L + P + L Y + +
Sbjct: 213 IKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 271
Query: 455 DK 456
Sbjct: 272 QC 273
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.9 bits (206), Expect = 5e-18
Identities = 27/275 (9%), Positives = 73/275 (26%), Gaps = 12/275 (4%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ + + + + + + R A + A+ + + ++L L L
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ ++ P +++ V+ L L + A
Sbjct: 95 HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 148
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
+ + + + ++ + ++ L N +++ + + V
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQ 207
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 345
Y + + H A L + P L IY+
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266
Query: 346 D--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
D + D + AL + ++ + + Y
Sbjct: 267 DMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 301
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.6 bits (156), Expect = 1e-11
Identities = 29/248 (11%), Positives = 62/248 (25%), Gaps = 10/248 (4%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA-ESYHK 141
+ + LQ AF +A++L+ N +L K + +
Sbjct: 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103
Query: 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201
+ P +++ L + ++ + L D A+ + V
Sbjct: 104 IIEEQPKNYQVWHHRRVLVEWLR-------DPSQELEFIADILNQDAKNYHAWQHRQWVI 156
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
E +D L ++ E + + N ++
Sbjct: 157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216
Query: 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMA 319
+N + G + L + + L Y +ML+ D
Sbjct: 217 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276
Query: 320 IVFYELAF 327
A
Sbjct: 277 EDILNKAL 284
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.4 bits (153), Expect = 3e-11
Identities = 32/254 (12%), Positives = 65/254 (25%), Gaps = 17/254 (6%)
Query: 49 KDALSY-ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
+D Y +L+ + A L +E ++ N + + L+ E
Sbjct: 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------KDLHE 96
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ ++ LVE + L +
Sbjct: 97 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 156
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYEKAALER 221
+ + +Q + LK D + V S + + +
Sbjct: 157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P A+ + I ++RG L + L + P+ + + LE
Sbjct: 217 PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLV---DIYEDMLENQ 272
Query: 282 INQGVAYYKKALYY 295
+ KAL
Sbjct: 273 CDNKEDILNKALEL 286
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 6e-07
Identities = 4/66 (6%), Positives = 22/66 (33%)
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
I + + + Y+ + + A ++++ + R + + + +
Sbjct: 34 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 453 HDDKLF 458
+++
Sbjct: 94 LHEEMN 99
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (271), Expect = 2e-26
Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 10/266 (3%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+ G G+ + + + A++ DP + A+ LG +E Q A+ + +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD--------LG 273
P A + V + N A L +P + +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 274 TKVKLEGDINQGVAYYKKAL--YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
+ + + + A+ D LGV + ++D A+ + A P
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
+ N LG + + ++AV Y+ AL ++P + +S NLG+ G A E
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263
Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGS 417
+A+ G + + S
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWS 289
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (259), Expect = 7e-25
Identities = 53/297 (17%), Positives = 100/297 (33%), Gaps = 11/297 (3%)
Query: 177 IQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
K Y+ + +P P + G+ + A+ +E A + P + EA+ +G
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK--------LEGDINQGVA 287
AI+ RCL + P+ + A +A++ T+ + + L
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYK 345
+ + F + + + LGV++
Sbjct: 124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
DKAV+C+ ALS++PN N LG + + A +A+ P Y +
Sbjct: 184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462
NLG+ + G+ A++ + + L + SR I L +
Sbjct: 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.1 bits (219), Expect = 1e-19
Identities = 49/338 (14%), Positives = 101/338 (29%), Gaps = 42/338 (12%)
Query: 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130
Y+ E + +G+ + A F AV+ DP++ A + G +
Sbjct: 8 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67
Query: 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
+ + A + + L P + A LA+ T+ + + + L+ P Y
Sbjct: 68 QELLAISALRRCLELKPDNQTALMALAVSFTN-------ESLQRQACEILRDWLRYTPAY 120
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A + +G + + +
Sbjct: 121 AHLVTPAEEGAGGAGLGP------------------SKRILGSLLSD-SLFLEVKELFLA 161
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310
+ + P LG L G+ ++ V + AL + LG
Sbjct: 162 AVRLDPTSIDPDVQC-----GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 216
Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
+ + A+ Y A P + NLG+ + +AVE + AL+++
Sbjct: 217 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276
Query: 371 -----------LNNLGVVYTVQGKMDAAAEMIEKAIAA 397
+ L + ++ G+ DA + ++
Sbjct: 277 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.2 bits (201), Expect = 2e-17
Identities = 53/325 (16%), Positives = 99/325 (30%), Gaps = 40/325 (12%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+A+ L+E +++D ++EA G LA +
Sbjct: 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------ 162
++L P N A + + +E +A E L P+Y
Sbjct: 80 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 139
Query: 163 --LGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
+ SL + + + A+++ LGV+++ +YD A+ C+ A
Sbjct: 140 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 199
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP + +G N E A+A Y R L + P + ++ N+ I+ +L
Sbjct: 200 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL------ 253
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
G + V ++ +AL G + +
Sbjct: 254 -GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW-----------------------S 289
Query: 339 NLGVIYKDRDNLDKAVECYQMALSI 363
L + D LS
Sbjct: 290 TLRLALSMLGQSDAYGAADARDLST 314
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 4/149 (2%)
Query: 322 FYELAFHF---NPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
Y+ + F NP G+ +L AV ++ A+ P ++ LG
Sbjct: 3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62
Query: 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437
+ A + + + P A L V + + A + L+ P +
Sbjct: 63 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122
Query: 438 AGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
G ++ +
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSL 151
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 107 bits (267), Expect = 2e-26
Identities = 43/262 (16%), Positives = 86/262 (32%), Gaps = 17/262 (6%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L L+ + + + + L D A Y GV+Y L A + +A
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP E + +G+ G+ ++A ++ L + P + A N IAL
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------ 118
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEA 336
G + + L +A ++ + V + +
Sbjct: 119 -GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
++ +++ S+ + S++ LG Y G +D+A + + A+A
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
Query: 397 ANPTYAEAYNN----LGVLYRD 414
N + L +L +D
Sbjct: 238 NNVHNFVEHRYALLELSLLGQD 259
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 102 bits (255), Expect = 6e-25
Identities = 42/261 (16%), Positives = 81/261 (31%), Gaps = 13/261 (4%)
Query: 197 LGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
L V +Q + L E+ AL A+ GV+Y + G A + + L
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
A+ P+ N + I LT G D L ++YA N G+A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNF-----DAAYEAFDSVLELDPTYNYA--HLNRGIALYY 117
Query: 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSIKPNFSQS 370
+ +A + +P+ L + + D + +
Sbjct: 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
+ + Q M+ + +E LG Y G + A ++ +
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
Query: 431 IDPDSRNAGQNRLLAMNYINE 451
+ + + LL ++ + +
Sbjct: 238 NNVHNFVEHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 66.8 bits (161), Expect = 1e-12
Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 20/265 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A L+ + LA E +L D + +G+ + LA + FS+A+
Sbjct: 6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ P + GI G A E++ L DP+Y A I L
Sbjct: 66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------- 118
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA--LGCYEKAALERPMYAEAY 228
G + + DP+ L + +L + L + + + +
Sbjct: 119 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV 178
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
+ +E A +++ + + L GD++ A
Sbjct: 179 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-------GDLDSATAL 231
Query: 289 YKKALYYNWHYADAMYNLGVAYGEM 313
+K A+ N H + +
Sbjct: 232 FKLAVANNVHNFVEHRYALLELSLL 256
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 62.9 bits (151), Expect = 3e-11
Identities = 32/199 (16%), Positives = 61/199 (30%), Gaps = 3/199 (1%)
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324
+A+ L ++ E + + + A +Y GV Y + +A +
Sbjct: 5 LAVPLQP---TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 61
Query: 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384
A P E N LG+ N D A E + L + P ++ + N G+ G+
Sbjct: 62 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 121
Query: 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
A + + +P L + + + K D +
Sbjct: 122 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 181
Query: 445 AMNYINEGHDDKLFEAHRD 463
N + ++L D
Sbjct: 182 LGNISEQTLMERLKADATD 200
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 4/177 (2%)
Query: 306 LGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361
L V L+ ++ + E + A+ GV+Y A + AL
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G LA
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
D + DP+ LA ++E ++ + H + + ++ +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 181
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 44.4 bits (103), Expect = 3e-05
Identities = 14/111 (12%), Positives = 32/111 (28%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
A + + L + +K+ + Q + ++ L
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ + + G Y G L A + A++ + + L+ LG
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 16/153 (10%), Positives = 32/153 (20%), Gaps = 9/153 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
L + A + D + + + Q + + K D +
Sbjct: 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172
Query: 116 ACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ L + S L LG +
Sbjct: 173 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG-------DL 225
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
+ A+ + H + + S L Q
Sbjct: 226 DSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 93.4 bits (230), Expect = 6e-21
Identities = 39/354 (11%), Positives = 83/354 (23%), Gaps = 55/354 (15%)
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+ ++ D +A + + ++G EA AL P + +A + LG
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA--TSVLGEV 60
Query: 167 LKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
L G + + ++ + + + TA EKA
Sbjct: 61 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120
Query: 221 RPMY--------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272
+ L+ A A + V ++
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-------------- 166
Query: 273 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332
Q + + + +
Sbjct: 167 -------QPQQQLQCLAMLIQCSLARGDLDNA--------RSQLNRLENLLGNGKYHSDW 211
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL----NNLGVVYTVQGKMDAAA 388
+ A + ++ + A + + + L N+ + G+ + A
Sbjct: 212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 271
Query: 389 EMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436
++E+ L LY AG S A LK+ +
Sbjct: 272 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 325
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 88.4 bits (217), Expect = 3e-19
Identities = 37/317 (11%), Positives = 78/317 (24%), Gaps = 29/317 (9%)
Query: 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAHTHCGILYKDE 129
+ +D+ + E + + A A++ P A + G + +
Sbjct: 5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 64
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G L + + + L L G Q + +A ++
Sbjct: 65 GELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 190 Y--------APAYYNLGVVYSELMQYDTALGCYEKAALERP-----MYAEAYCNMGVIYK 236
+ + D A + +
Sbjct: 124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 183
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--- 293
RGDL++A + R + N + + ++ A ++ GD + +
Sbjct: 184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243
Query: 294 -YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKD 346
N N+ A + +F+ A + E L +Y
Sbjct: 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303
Query: 347 RDNLDKAVECYQMALSI 363
A AL +
Sbjct: 304 AGRKSDAQRVLLDALKL 320
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 76.5 bits (186), Expect = 2e-15
Identities = 35/314 (11%), Positives = 71/314 (22%), Gaps = 34/314 (10%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-----ALERPMYAEAYCNMGVIYK 236
+ ++ D +A V D A + A A +G +
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
+G+L ++A ++ ++ + +L + +G + +KA
Sbjct: 63 CKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121
Query: 297 WHY--------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEA 336
+ + D A +
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
G + R L++ S + + + + G AAA +
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241
Query: 397 A----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN----RLLAMNY 448
N + N+ G A E+ + R LL Y
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301
Query: 449 INEGHDDKLFEAHR 462
G
Sbjct: 302 WQAGRKSDAQRVLL 315
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 73.0 bits (177), Expect = 3e-14
Identities = 34/292 (11%), Positives = 80/292 (27%), Gaps = 30/292 (10%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
K E M+AE + N G+ + A + L P + +A + LG
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 60
Query: 276 VKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329
+ +G++ + +A ++ + ++ A E AF
Sbjct: 61 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120
Query: 330 NPHC--------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------------ 369
+ LD+A + + + ++
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180
Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
G + + +++ ++ + + A + ++ G + A +
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240
Query: 430 KIDPDSR--NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
K + + GQ R +A I G + + + L
Sbjct: 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 47.2 bits (110), Expect = 5e-06
Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 5/139 (3%)
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRD 414
+ ++ V G D A + + A+ P A + LG +
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 474
G ++ ++ +Q ++ + + + ++ +L ++
Sbjct: 64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 475 YTSWDNTKDPERPLVIGYV 493
+ +
Sbjct: 124 QHLEQLPMHEFLVRIRAQL 142
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (205), Expect = 8e-19
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 40/209 (19%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI L + G + + + + + ++ +N+G +Y+ L A + +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
+ A AY G++Y + AI + L
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------- 102
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
NQ + Y L + + +YN+ Y + ++ A LA
Sbjct: 103 ------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE---- 152
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKP 365
+DKA+EC +P
Sbjct: 153 --------PRHSKIDKAMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (178), Expect = 3e-15
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 21/180 (11%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
AI+L + G + D + + ++ +N+G Y + A +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
+ + + H A A G++Y + D A++ + AL +
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------N 103
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ + E N+ +Y A + + + R++ ++ +
Sbjct: 104 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (141), Expect = 2e-10
Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 44/220 (20%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+A+S + + + AL + V + S G + A +F
Sbjct: 3 VEAISLWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAF 59
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+ ++ D A A+ G+LY + A + +AL
Sbjct: 60 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN---------------- 103
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
I L+ YN+ +Y++ ++ A A +
Sbjct: 104 ---------QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS--- 151
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
++ A+ C + P I +
Sbjct: 152 ---------EPRHSKIDKAMECVWKQKLYEP-VVIPVGRL 181
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.5 bits (205), Expect = 4e-18
Identities = 28/246 (11%), Positives = 67/246 (27%), Gaps = 33/246 (13%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI------AKNNMAI 267
+E+AA + IY+ R +L A + +
Sbjct: 33 FEEAA-------DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYK 85
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
G V + + + + + ++ + AI YELA
Sbjct: 86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145
Query: 328 ------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNL 374
+ + +A + Y + + +
Sbjct: 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEA-----YNNLGVLYR--DAGSISLAIDAYEQ 427
G+ AAA +++ + +P +A++ +L D+ +S ++
Sbjct: 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265
Query: 428 CLKIDP 433
+++D
Sbjct: 266 FMRLDK 271
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (133), Expect = 7e-09
Identities = 27/224 (12%), Positives = 57/224 (25%), Gaps = 19/224 (8%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKA 142
+++ LA DSF +A + + +K G V A +S A
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYN 196
+ + I Y A + +
Sbjct: 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163
Query: 197 LGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ + QY A Y K L + + + G+ D +A +
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ PNF ++ + + +++ + +
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (127), Expect = 4e-08
Identities = 19/161 (11%), Positives = 42/161 (26%), Gaps = 17/161 (10%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
A+ C IY+ R L+ A + + A + + + G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-----------KIDPDSR 436
+ +E AI + + + + Y + + + +
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 437 NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
+ A +G + + + K M S
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.9 bits (193), Expect = 4e-17
Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 16/205 (7%)
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
P+A+ L + G L + + Y A+ +P A Y N + Y ++ Q + A
Sbjct: 2 PSAQ----ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 57
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
L +A +A+ +G + AIA +R +++ + + +
Sbjct: 58 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA- 116
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+ ++ + ++ + + + + + + +
Sbjct: 117 -----------LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGH 165
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVE 355
I D ++
Sbjct: 166 EDDGHIRAQQACIEAKHDKYMADMD 190
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.1 bits (191), Expect = 6e-17
Identities = 29/197 (14%), Positives = 68/197 (34%), Gaps = 9/197 (4%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A L + G ++ + + A Y +A+ N A N + Y +M + + A+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A + +A LG + ++ D+A+ Q A S+ + + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-----IPSALR 118
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A + +I + E+ + + A ++ ++ + D + +
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC- 177
Query: 446 MNYINEGHDDKLFEAHR 462
I HD + +
Sbjct: 178 ---IEAKHDKYMADMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.9 bits (188), Expect = 1e-16
Identities = 22/139 (15%), Positives = 46/139 (33%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A+ G +A CY A++ P + N + Y + + A +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
A+ + +A+ LG + S AI ++ + + R + + + I +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 454 DDKLFEAHRDWGKRFMRLY 472
E R + + Y
Sbjct: 124 RWNSIEERRIHQESELHSY 142
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.4 bits (184), Expect = 5e-16
Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 12/191 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N L K+ +A A Y + ++ + + +C A A++LD Q
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ AH G + EA + +A S + D+ ++L++A
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN------FGDDIPSALRIA---- 120
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+K + +++ + + + + + + L ++ I
Sbjct: 121 --KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178
Query: 235 YKNRGDLESAI 245
+ +
Sbjct: 179 EAKHDKYMADM 189
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.1 bits (178), Expect = 3e-15
Identities = 26/181 (14%), Positives = 50/181 (27%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A + G K+ A Y A NP A N + Y ++A+ +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL + ++ LG D A +++A + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
E+ + + + + + A + E H D G + D
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 480 N 480
Sbjct: 184 K 184
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.4 bits (153), Expect = 7e-12
Identities = 25/213 (11%), Positives = 62/213 (29%), Gaps = 12/213 (5%)
Query: 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
S + + +G L + A + A+ +P A +T+ + Y + +A
Sbjct: 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
+AL D A L ++ + + I A + + +
Sbjct: 61 CRRALELDGQSVKAHFFLGQCQLEM-------ESYDEAIANLQRAYSLAKEQRLNFGDDI 113
Query: 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
+ + + ER ++ E+ + + + E + +R +
Sbjct: 114 PSALRIAKK-----KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD 168
Query: 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ A + ++ V +K
Sbjct: 169 GHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 73.5 bits (180), Expect = 7e-15
Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 8/178 (4%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ A+ A +P A ++ + + ++A E ++ + P + + L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 375 GVVY-TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
+ Q + D A + L + + Q ++
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130
Query: 434 DSRNAGQNRLLAMNYINEGHDDKL---FEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 488
+ + + + + + DD+L E G F+ + + K L
Sbjct: 131 EKGFLANDT--SFSDVRDI-DDRLGGYIELFSTAGNYFLVPIASINTL-EIKSATSLL 184
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 69.3 bits (169), Expect = 2e-13
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 13/154 (8%)
Query: 93 QMQNM---GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
Q +N G+L A + EA+K P++A + L +G A E +++ P
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQ 206
Y P A L + +K A +D Q A + +
Sbjct: 62 EYLPGASQLRHL-------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD 114
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
Y+ + R + D
Sbjct: 115 YEQVSELALQIEELRQEKGFLANDTSFSDVRDID 148
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 68.9 bits (168), Expect = 2e-13
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 1/132 (0%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
EG + Q + +A+ + A + F+ A + P +
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 339 NLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
L + K + + + + V + +E+ +
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128
Query: 398 NPTYAEAYNNLG 409
N+
Sbjct: 129 RQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 65.1 bits (158), Expect = 4e-12
Identities = 14/141 (9%), Positives = 32/141 (22%), Gaps = 6/141 (4%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G Q ++ EA+K P A + + ++ A ++ P Y
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ + K + + +N + D Q
Sbjct: 69 QLRHLVKAAQARKDFAQGAAT------AKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 290 KKALYYNWHYADAMYNLGVAY 310
+ + +
Sbjct: 123 LQIEELRQEKGFLANDTSFSD 143
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 64.7 bits (157), Expect = 7e-12
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 19/182 (10%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ K+ALS + AL L ++ + L + A +
Sbjct: 2 QWKNALS-------EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLM 54
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+++KL P+ + L K + A+ A + + +
Sbjct: 55 QSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV------SFNL 108
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
++ + + + + ++ + +S++ D LG +E A
Sbjct: 109 SMVSQDYEQVSELALQIEELRQEKGFLANDTS--FSDVRDIDDRLG----GYIELFSTAG 162
Query: 227 AY 228
Y
Sbjct: 163 NY 164
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 63.9 bits (155), Expect = 1e-11
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 441 NRLLAMNYINEGHDDKLFEAHRDW 464
L +
Sbjct: 69 Q--LRHLVKAAQARKDFAQGAATA 90
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 63.1 bits (153), Expect = 2e-11
Identities = 17/182 (9%), Positives = 40/182 (21%), Gaps = 9/182 (4%)
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
+ G L+ A+ + SP +++ L GD + +++
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID-------GDFERADEQLMQSIKLF 60
Query: 297 WHYADAMYNLGVAYGEMLKFDMAIV-FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
Y L + + ++ E
Sbjct: 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
++ N+ D IE A + ++ L +
Sbjct: 121 LALQIEELRQEKGFLANDTSFSDVRDID-DRLGGYIELFSTAGNYFLVPIASINTLEIKS 179
Query: 416 GS 417
+
Sbjct: 180 AT 181
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (167), Expect = 2e-14
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A +G + D ++A+ Y++ + P N A + G K +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGV 342
+ ++ A A +G +Y + K+ AI FY LA H P + C
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123
Query: 343 IYKDR 347
I K++
Sbjct: 124 ILKEQ 128
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (150), Expect = 4e-12
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 394 AIAANPTYAEAY-------NNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
AI E Y +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (146), Expect = 1e-11
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 1/119 (0%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
+ V +A A +G E + +Y K+L + D + A
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 3e-11
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 217 AALERPMYAEAYC-------NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A E Y +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (141), Expect = 5e-11
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A LG + FD A+ Y+ A +P N +Y ++ + +K E +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 360 ALSIKPNFS-------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
A+ + ++ +G Y + K A K++A + T +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (136), Expect = 3e-10
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 7/108 (6%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A+ +LG + D + + +Y KA + + N Y E ++ E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 326 AFHFNPHCAE-------ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
A E A +G Y + A+ Y +L+
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 2e-08
Identities = 24/109 (22%), Positives = 37/109 (33%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ A G + A + Y KA DP+ A V + G K
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
+ I+ E + A AY +G Y + +Y A+ Y K+ E
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 1e-07
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 48 GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
GK AL N + F AL Y+ E D N+ + + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 105 FSEAVKLDPQNACAHTHC-------GILYKDEGRLVEAAESYHKALSADPS 148
+A+++ +N + G Y E + +A Y+K+L+ +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 4e-07
Identities = 20/102 (19%), Positives = 36/102 (35%)
Query: 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
G + A + +A +LDP N T+ +Y ++G + E KA+
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
+ +A +G S +D I Y ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 4e-06
Identities = 15/80 (18%), Positives = 30/80 (37%)
Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
LG + D A + +KA +PT N +Y + G + + E+ +
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 430 KIDPDSRNAGQNRLLAMNYI 449
++ ++R + A I
Sbjct: 66 EVGRENREDYRQIAKAYARI 85
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 67.3 bits (163), Expect = 1e-13
Identities = 19/182 (10%), Positives = 47/182 (25%), Gaps = 26/182 (14%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+E E+ A G +Y G A+ Y + ++ + A
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS---- 59
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
A NL + Y ++ ++ A+ + A +
Sbjct: 60 ----------------------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
+ G + + A ++ L + P + + + + +
Sbjct: 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA 157
Query: 394 AI 395
+
Sbjct: 158 NM 159
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 60.0 bits (144), Expect = 6e-11
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------------NPHCAEACNNLGVI 343
A + G Y + K+ A++ Y + A NL +
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
Y KAVEC AL + + L G + + ++A EK + NP
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 404 AYNNLGVLYRDAG 416
A + + + A
Sbjct: 134 ARLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 58.8 bits (141), Expect = 1e-10
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 15/132 (11%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI---------------DPHYAPAYYNLGVVY 201
A ++ + GT G + +Y + + + A+ NL + Y
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+L +Y A+ C +KA + G + ESA +E+ L V+P + A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 262 KNNMAIALTDLG 273
+ + +
Sbjct: 135 RLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 56.5 bits (135), Expect = 8e-10
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 15/144 (10%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---------------KPNF 367
+E+ A G +Y +AV Y +S +
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFL 63
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
+ NL + Y + A E +KA+ + + G A +E+
Sbjct: 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 123
Query: 428 CLKIDPDSRNAGQNRLLAMNYINE 451
L+++P ++ A + E
Sbjct: 124 VLEVNPQNKAARLQIFMCQKKAKE 147
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 46.5 bits (109), Expect = 2e-06
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 8/136 (5%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKA--------ALERPMYAEAYCNMGVIYKNRGDL 241
A G VY + +Y A+ Y K L + + + N
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
+ Y + + + L G L + ++K L N
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 302 AMYNLGVAYGEMLKFD 317
A + + + + +
Sbjct: 134 ARLQIFMCQKKAKEHN 149
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 45.7 bits (107), Expect = 4e-06
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDLGT 165
+ A G +Y G+ V+A Y K +S ++ K + L +L
Sbjct: 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
++ +AL +D Y G + ++++A G +EK P
Sbjct: 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132
Query: 226 EAYCNMGVIYKNRGDLESA 244
A + + K +
Sbjct: 133 AARLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 42.2 bits (98), Expect = 6e-05
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 15/125 (12%)
Query: 55 ANILRSRNKFVDALALYEIV---------------LEKDSGNVEAHIGKGICLQMQNMGR 99
+ K+V A+ Y + +S + A + +C
Sbjct: 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A + +A+ LD N G A + K L +P K A + +
Sbjct: 82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141
Query: 160 LTDLG 164
Sbjct: 142 QKKAK 146
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (154), Expect = 1e-12
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 5/118 (4%)
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE----- 392
+ ++L K + +Q + + D + I
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
+ + L V A+ L+ +P + A + L +
Sbjct: 63 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (144), Expect = 2e-11
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-- 292
+ DL ++ A + + A L DI +G+ ++
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
D ++ L V + +++ A+ + P +A +I K
Sbjct: 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (139), Expect = 1e-10
Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM---AIVFYELAF 327
+ ++ D+ + ++ + D IV E
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 328 --HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
+ L V +KA++ + L +P +Q+ ++ K
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (132), Expect = 9e-10
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 6/113 (5%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
L++ + + +A K A L + + GI E L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64
Query: 186 I--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
+ L V L +Y+ AL P +A +I K
Sbjct: 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 6e-09
Identities = 10/111 (9%), Positives = 23/111 (20%), Gaps = 5/111 (4%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ---YDTALGCYEKAA 218
+ L + +K+ + + E+
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 219 --LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+ + + V + E A+ L P AK +
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (97), Expect = 4e-05
Identities = 6/107 (5%), Positives = 21/107 (19%), Gaps = 8/107 (7%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAECLA 157
F + + + + + L +
Sbjct: 18 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD---- 73
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
+ L + ++ L+ +P A ++ +
Sbjct: 74 -YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 7e-04
Identities = 9/113 (7%), Positives = 19/113 (16%), Gaps = 8/113 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES---AIACYERCLAVSPNFEIAK 262
++ + + I E L
Sbjct: 14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK----- 68
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
+ L + + + Y + L A + M K
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (145), Expect = 3e-11
Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 30/179 (16%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
E+ + G +Y G + A+ Y++ ++ N A
Sbjct: 8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA---------- 57
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ NL + + ++ F AI A + + + +
Sbjct: 58 ----------------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 101
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
G + ++ + A +Q L + PN + L V + A EK + AN
Sbjct: 102 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR----EKKLYAN 156
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 4e-07
Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEA---------------LKIDPHYAPAYYNLGVVY 201
+ ++ + GT G + + +Y + K ++ NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+L + A+ KA + G + D E A A +++ L + PN + A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 262 KNNMAIALTDLGTKVKLE 279
K +A+ + ++ E
Sbjct: 133 KTQLAVCQQRIRRQLARE 150
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMA---------------LSIKPNFSQSLNNLGVVY 378
+ G +Y +A+ Y+ + S NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
AA E KA+ + + + G + LA +++ L++ P+++ A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 439 GQNRLLAMNYINE 451
+ I
Sbjct: 133 KTQLAVCQQRIRR 145
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.003
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 55 ANILRSRNKFVDALALY---------------EIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ K+ AL Y E + + + +H+ +C
Sbjct: 20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 79
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A +S ++A++LD N + G + A + K L P+ K A LA+
Sbjct: 80 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139
Query: 160 LTDLGTSLK 168
+ L
Sbjct: 140 QQRIRRQLA 148
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.7 bits (143), Expect = 6e-11
Identities = 30/189 (15%), Positives = 50/189 (26%), Gaps = 33/189 (17%)
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
D L +K L +E N+G + + E AI Y + L
Sbjct: 13 ADVDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--------- 59
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
++ A + N+G +M + A+ A
Sbjct: 60 ----------------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 103
Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
+P +A ++ D+A+ + A I P L V
Sbjct: 104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163
Query: 387 AAEMIEKAI 395
EKA
Sbjct: 164 K----EKAA 168
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.0 bits (136), Expect = 5e-10
Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 16/153 (10%)
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA------------- 183
+ + D ++ L ++G + + N + I+KY +
Sbjct: 7 PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66
Query: 184 ---LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
K+ P N+G ++ + A+ +A P +A ++ +
Sbjct: 67 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 126
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ A+A ++ ++P + + + +
Sbjct: 127 YDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.5 bits (127), Expect = 9e-09
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----------------NPHCAEACNNLGVI 343
++ + N+G + + ++MAI Y + P N+G
Sbjct: 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ AV+ AL I P+ +++L + + D A ++KA P
Sbjct: 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146
Query: 404 AYNNLGVLYR 413
L + +
Sbjct: 147 IQAELLKVKQ 156
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (86), Expect = 0.002
Identities = 21/116 (18%), Positives = 37/116 (31%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+ A+ + + A A + + + G C + + A DS EA
Sbjct: 44 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 103
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+++DP N A ++ +A KA P K L V +
Sbjct: 104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 8e-11
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AE Y D E+AI Y + + ++P+ I N ++A
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-------TECYGY 62
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ +A+ + Y Y + + KF A+ YE PH +A
Sbjct: 63 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
Query: 345 K--DRDNLDKAVECYQMALSIKPN 366
K + ++A+ + S+ +
Sbjct: 123 KIVKQKAFERAIAGDEHKRSVVDS 146
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (129), Expect = 4e-09
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 5/145 (3%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A L D + +Y +A+ N A N +AY + A+
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A + + A+ Y+ + +KP+ + + +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-- 127
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGV 410
+ E+AIA + ++L +
Sbjct: 128 ---KAFERAIAGDEHKRSVVDSLDI 149
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 7e-09
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 2/142 (1%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
K + A+ Y A+ AI + + + A++
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK--NRGDLES 243
+D Y YY L ++ AL YE +P +A K + E
Sbjct: 73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 132
Query: 244 AIACYERCLAVSPNFEIAKNNM 265
AIA E +V + +I +
Sbjct: 133 AIAGDEHKRSVVDSLDIESMTI 154
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 4e-08
Identities = 21/123 (17%), Positives = 42/123 (34%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
AI + Y + Y G A+ YE +K+ P ++A + +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 454 DDK 456
++
Sbjct: 130 FER 132
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 19/150 (12%)
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG-------CYEKAA 218
LK N + Y A+K + + Y +A
Sbjct: 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
Y + Y G +A+ YE + V P+ + AK + K
Sbjct: 72 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK--- 128
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGV 308
+++A+ + H + +L +
Sbjct: 129 ---------AFERAIAGDEHKRSVVDSLDI 149
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 58.1 bits (139), Expect = 2e-10
Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 25/165 (15%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
Y+ E+ A G + + ++ AI Y+ L + E + + +
Sbjct: 6 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD----- 60
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
NL Y + + AI + +
Sbjct: 61 --------------------KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 100
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
+A LGV L++A E A S+ PN N+ +
Sbjct: 101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 54.6 bits (130), Expect = 3e-09
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----------------YAPAYYNLGVV 200
A + + G + I KY EAL H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
Y++ Y A+ K +A +GV G LE A + +++PN
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 261 AKNNMAIALTDLG 273
+N+ + + L
Sbjct: 137 IRNSYELCVNKLK 149
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 49.6 bits (117), Expect = 2e-07
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQM----------------ALSIKPNFSQSLNNLGVV 377
A G + ++ +++A+ Y+ K NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437
Y A + K + + +A LGV G + A + + ++P++ +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 438 AGQNRLLAMNYINE 451
+ L +N + E
Sbjct: 137 IRNSYELCVNKLKE 150
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 48.5 bits (114), Expect = 4e-07
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----------------AEACNNLGVI 343
A + G + + + + AIV Y+ A F H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
Y + KA++ L I N ++L LGV G ++ A E + KA + NP +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 404 AYNNLGVLYR 413
N+ +
Sbjct: 137 IRNSYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 42.3 bits (98), Expect = 5e-05
Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 23/139 (16%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEK----------------AALERPMYAEAYCNMGVI 234
A G + + + + A+ Y++ ++ + N+
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
Y D AI + L + N A + +A G + + KA
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG-------FLEEAKENLYKAAS 129
Query: 295 YNWHYADAMYNLGVAYGEM 313
N + D + + ++
Sbjct: 130 LNPNNLDIRNSYELCVNKL 148
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 55 ANILRSRNKFVDALALYE----------------IVLEKDSGNVEAHIGKGICLQMQNMG 98
N +N+ +A+ Y+ ++ +K + + ++ C
Sbjct: 24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 83
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
A D S+ +K+D N A G+ G L EA E+ +KA S +P+ +
Sbjct: 84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143
Query: 159 VLTDLG 164
+ L
Sbjct: 144 CVNKLK 149
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 4e-10
Identities = 21/93 (22%), Positives = 34/93 (36%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
+ AE +G + D E+ L EI+ + L L V +GD+
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
++ + KK L + + A NL M K
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 5e-10
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDA 386
AE LG + + + AL + L+ L QG +D
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYR 413
A + +K + +P + A NL
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 7e-09
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYE-------LAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + LG + ++ E + L + +LDK
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
A+ + L + P ++ NL + K
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLES 243
A + LG V Y E+A + + +GDL+
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A+ ++ L + P + A N+ +
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 1e-05
Identities = 14/82 (17%), Positives = 27/82 (32%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + E +AL + + VL L ++ G+ + +
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71
Query: 183 ALKIDPHYAPAYYNLGVVYSEL 204
L++DP + A NL +
Sbjct: 72 LLELDPEHQRANGNLKYFEYIM 93
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 9e-04
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+A+ S++ L V + +++ E L
Sbjct: 3 LTAEDSFE-----LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY 57
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
+ D AL +K P + A N+
Sbjct: 58 QQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 5e-10
Identities = 17/113 (15%), Positives = 37/113 (32%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ +KP++ + + + + A E+ + + L +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 4e-09
Identities = 19/108 (17%), Positives = 36/108 (33%)
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
L + G K G+I+ + Y +A+ + H N AY + + A
Sbjct: 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 64
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
P + + + + ++A Y+ L + N Q L
Sbjct: 65 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 2e-07
Identities = 21/108 (19%), Positives = 38/108 (35%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
G N+D A++CY A+ + P+ +N Y +G A E K
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+ P + + Y+ A YE+ LK + ++ +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 110
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 4e-07
Identities = 28/107 (26%), Positives = 39/107 (36%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
L + G GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+P + + Y + E A YE L N K +
Sbjct: 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 5e-07
Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 7/121 (5%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
G + G+++ A+ CY + + P+ + +N + +GD +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSA-------AYAKKGDYQK 55
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
K + + A + +F+ A YE + + L +
Sbjct: 56 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
Query: 345 K 345
Sbjct: 116 A 116
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 19/105 (18%), Positives = 36/105 (34%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N S DAL Y ++ D N + + + + A++ + V L P
Sbjct: 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
++ + R EA +Y + L + + E L +
Sbjct: 70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 5e-05
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
G + D AL CY +A P Y N Y +GD + A +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
+ + P++ + A AL L + Y++ L + + L
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFL-------NRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 53.7 bits (127), Expect = 3e-08
Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 7/226 (3%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
LG + + A +EKA + N+GV+Y +E +
Sbjct: 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFY 61
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
A + + + + + + + N+ + YY KA + A G+
Sbjct: 62 AKACDLNYSNGCHLLGNLY-YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGK 120
Query: 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
++ D + + + C LG +Y K ++ + + S
Sbjct: 121 VVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPG 180
Query: 373 N----LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ + + + A NLG + +
Sbjct: 181 CFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 226
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 28/242 (11%), Positives = 51/242 (21%), Gaps = 10/242 (4%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G E +A + + KA D L ++ K K +
Sbjct: 9 GAKSYKEKDFTQAKKYFEKA--CDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
+ + + AL Y KA + A +
Sbjct: 67 LNYSNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRD 125
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302
A A N + K +
Sbjct: 126 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAG 185
Query: 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVECYQ 358
+GE + + C NLG + + + N +A+E ++
Sbjct: 186 NMY---HHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFK 242
Query: 359 MA 360
Sbjct: 243 KG 244
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 47.8 bits (112), Expect = 7e-07
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 18/141 (12%)
Query: 224 YAEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFEI------------AKNNMAIAL 269
AY + + G+ + A A R + +S +A AL
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
L + + ++ + Y+ + N + A+Y+ +A + + A+ ++
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125
Query: 326 AFHFNPHCAEACNNLGVIYKD 346
+ +
Sbjct: 126 VVEMIEERKGETPGKERMMEV 146
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 15/143 (10%), Positives = 35/143 (24%), Gaps = 25/143 (17%)
Query: 334 AEACNNLGVIYK--DRDNLDKAVECYQMALSIKPNFSQ------------SLNNLGVVYT 379
A L + D+A + A+ I L
Sbjct: 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66
Query: 380 VQGKMDAAAEMIEKAIAANPTYAEA-----------YNNLGVLYRDAGSISLAIDAYEQC 428
D A +KA+ E + + G + A+ +++
Sbjct: 67 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126
Query: 429 LKIDPDSRNAGQNRLLAMNYINE 451
+++ + + + M +
Sbjct: 127 VEMIEERKGETPGKERMMEVAID 149
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 38.6 bits (88), Expect = 9e-04
Identities = 14/142 (9%), Positives = 29/142 (20%), Gaps = 18/142 (12%)
Query: 190 YAPAYYNLGVVYSELMQ--YDTALGCYEKA------------ALERPMYAEAYCNMGVIY 235
AY L +L+ YD A +A A + +
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD----LGTKVKLEGDINQGVAYYKK 291
+ A+ ++ L + + G + + +KK
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125
Query: 292 ALYYNWHYADAMYNLGVAYGEM 313
+
Sbjct: 126 VVEMIEERKGETPGKERMMEVA 147
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 47.9 bits (113), Expect = 9e-07
Identities = 21/157 (13%), Positives = 36/157 (22%), Gaps = 26/157 (16%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
A G+ GR +A+ AL + + +D
Sbjct: 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGP-------------------VLDDLRDFQ 53
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
A + A+ + + E E P + + Y
Sbjct: 54 FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL 113
Query: 238 RGDLESAIACYERC-------LAVSPNFEIAKNNMAI 267
A+ Y R L + P + N I
Sbjct: 114 SDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 150
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.2 bits (93), Expect = 3e-04
Identities = 12/127 (9%), Positives = 18/127 (14%), Gaps = 12/127 (9%)
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
A G G Q + AL A
Sbjct: 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFAT 60
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
A + + P L Y + + A
Sbjct: 61 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120
Query: 388 AEMIEKA 394
+
Sbjct: 121 LGAYRRV 127
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.7 bits (89), Expect = 0.001
Identities = 20/134 (14%), Positives = 29/134 (21%), Gaps = 12/134 (8%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ +F A L + G V + ++ A L
Sbjct: 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP------------FATALVED 65
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
AHT GR P +P L G +
Sbjct: 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR 125
Query: 175 DGIQKYYEALKIDP 188
+ L IDP
Sbjct: 126 RVKTTLADDLGIDP 139
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 19/278 (6%), Positives = 67/278 (24%), Gaps = 33/278 (11%)
Query: 164 GTSLKLAGNTQDGIQKYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
+ + YE L + H+ +Y ++ ++
Sbjct: 22 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYE----AAQYLE---------------- 61
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
++ G + + + A YER ++ + +
Sbjct: 62 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL------KKNMLLYFAYADYEESRMKY 115
Query: 283 NQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA-CNNL 340
+ + Y + L + ++ A
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175
Query: 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
+ Y + A + +++ L + + + + + + + E+ + +
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235
Query: 401 YAEA----YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
E + + G ++ + ++ +
Sbjct: 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (90), Expect = 6e-04
Identities = 8/82 (9%), Positives = 14/82 (17%), Gaps = 15/82 (18%)
Query: 316 FDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ + + E L + A + N Q
Sbjct: 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113
Query: 375 GVVYTVQGKMDAAAEMIEKAIA 396
M+E I
Sbjct: 114 --------------SMVEDKIQ 121
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.8 bits (88), Expect = 0.001
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVF 322
N A L K D GV + +Y L + ++ ++ MA +
Sbjct: 40 NYAWGLI----KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 95
Query: 323 YELAFHFNPHCAEACNNLGVIYK 345
+ F + + ++
Sbjct: 96 VDTLFEHERNNKQVGALKSMVED 118
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.0 bits (86), Expect = 0.002
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 342 VIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
+ D ++ V+ + L L + G+ A ++
Sbjct: 46 IKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105
Query: 401 YAEA 404
+
Sbjct: 106 NKQV 109
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.9 bits (83), Expect = 0.004
Identities = 9/89 (10%), Positives = 20/89 (22%), Gaps = 3/89 (3%)
Query: 178 QKYYEALKIDPHYAPAY-YNLGVVYSE-LMQYDTALGCYEKAALERPM-YAEAYCNMGVI 234
Q+ + Y G++ S + + E E + +
Sbjct: 23 QQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIG 82
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKN 263
G+ A + N +
Sbjct: 83 CYKLGEYSMAKRYVDTLFEHERNNKQVGA 111
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 38.3 bits (87), Expect = 0.001
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 24/144 (16%)
Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----------LDKAV 354
+ + +L F+ E + NP A+ G + + + +A+
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 355 ECYQMALSIKPNFSQSLNNLGVVY-----------TVQGKMDAAAEMIEKAIAANPTYAE 403
++ AL I P +++ +G Y + D A + ++A+ P
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQ 427
+L + + L +AY+Q
Sbjct: 122 YLKSLEMTAKAPQ---LHAEAYKQ 142
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 37.9 bits (86), Expect = 0.001
Identities = 18/146 (12%), Positives = 31/146 (21%), Gaps = 17/146 (11%)
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK------------ 277
+ + E E +P L +L
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 278 --LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
E + + Y + FD+A F++ A P
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMAL 361
+L + K E Y+ L
Sbjct: 122 YLKSLEMTAK---APQLHAEAYKQGL 144
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 921 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.91 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.7 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.7 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.56 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.55 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.53 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 99.52 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.5 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 99.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.16 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.15 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 99.15 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.1 | |
| d2bfwa1 | 196 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 98.96 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.95 | |
| d2f9fa1 | 166 | First mannosyl transferase WbaZ {Archaeoglobus ful | 98.92 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.88 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.67 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.61 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.55 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 98.12 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 97.97 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.86 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 97.83 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 97.83 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 97.74 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.7 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.66 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 97.5 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 97.27 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 97.24 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.61 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.83 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 95.73 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.71 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.25 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 93.23 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-41 Score=292.93 Aligned_cols=381 Identities=27% Similarity=0.372 Sum_probs=356.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999968999999999999998099988999998999998179999999999999809997889999999999839
Q 002443 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (921)
Q Consensus 51 ~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (921)
++.+|..+++.|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 69999999986999999999999998689989999999999998699999999999999859998999999999964200
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 97999999999996399995768899999998899999709929999999999941999999999999999981999999
Q 002443 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210 (921)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 210 (921)
++++|+..+.++....+..... ................+...........+.........+......+....+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 0222222222121122222222-------222222222222222222221112222222222222222222110001356
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999839997999999999999879999999999999972999099999899999963356641499999999999
Q 002443 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290 (921)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~ 290 (921)
...+.+.+...|.....+..+|..+...+++++|...++++++.+|++...+..++.+ +...+++++|+..++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-------~~~~~~~~~A~~~~~ 227 (388)
T d1w3ba_ 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV-------LKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HHTTTCTTHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------HHCCCCHHHHHHHHH
T ss_conf 7888874025861068998636301024719999999999998494649999997155-------220052999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99985899999999999999973996999999999986099999999999999998699899999999999609999999
Q 002443 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370 (921)
Q Consensus 291 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 370 (921)
++....+.....+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.....
T Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 307 (388)
T d1w3ba_ 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 85777554799999999999987899999999999998499989999999999997487999999998654048730010
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999999919999999999999992999799999999999990999999999999862099982057659999
Q 002443 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (921)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~a 445 (921)
+..++.++...|++++|+..++++++.+|+++.++..+|.+|..+|++++|+.+|+++++++|++..++.++..+
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 157999999878999999999999986889899999999999985999999999999997099989999999999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-37 Score=264.42 Aligned_cols=359 Identities=26% Similarity=0.380 Sum_probs=300.9
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 84369899999999968999999999999998099988999998999998179999999999999809997889999999
Q 002443 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 45 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (921)
+.+...++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+..+.+..+...........
T Consensus 30 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1w3ba_ 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899999999999986999999999999998599989999999999642000222222222121122222222222222
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99983997999999999996399995768899999998899999709929999999999941999999999999999981
Q 002443 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (921)
..........+...........+..... ...........+....+...+.+.+...|+...++..+|..+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (388)
T d1w3ba_ 110 ALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC
T ss_conf 2222222222222211122222222222-------222222221100013567888874025861068998636301024
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999999999999839997999999999999879999999999999972999099999899999963356641499999
Q 002443 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
+++++|...++++++.+|++..++..+|.++...|++++|+..++++....+.....+..++.+ +...+++++
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ 255 (388)
T d1w3ba_ 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV-------YYEQGLIDL 255 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH-------HHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCHHH
T ss_conf 7199999999999984946499999971552200529999999998577755479999999999-------998789999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999985899999999999999973996999999999986099999999999999998699899999999999609
Q 002443 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (921)
Q Consensus 285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (921)
|+..++++++.+|++..++..+|.++...+++++|+..+++++...|.....+..++.++...|++++|+++|+++++++
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 335 (388)
T d1w3ba_ 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999999984999899999999999974879999999986540487300101579999998789999999999999868
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999991999999999999999299979999999999999099
Q 002443 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (921)
Q Consensus 365 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 417 (921)
|+++.++..+|.++...|++++|+..|+++++++|+++.++.++|.+|.++||
T Consensus 336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 89899999999999985999999999999997099989999999999998589
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.2e-27 Score=196.99 Aligned_cols=122 Identities=25% Similarity=0.440 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 699999999998609999--999999999999869989999999999960999999999999999991999999999999
Q 002443 316 FDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (921)
Q Consensus 316 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 393 (921)
+.+|+..+.+++..+|+. +.++..+|.++...|++++|+.++++++...|++..++..+|.++...|++++|+..+++
T Consensus 152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99999999999997130122211103688888888775500211122222222211101333012211110137888778
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99929997999999999999909999999999998620999820
Q 002443 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 394 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
+++.+|+++.+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 232 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 232 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 99884324999999999999878999999999999970975700
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.6e-26 Score=191.24 Aligned_cols=258 Identities=17% Similarity=0.187 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 36989999999996899999999999999809998899999899999817999999999999980999788999999999
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (921)
+....+..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|.++++++|++...+..+|.++
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 53999999999998599999999999999868998999999999999837758899999851002222222222222222
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98399799999999999639999576889999999889999970992999999999994199999999999999998199
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
...|++++|+..+++++...|................ ...........+..
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~--- 148 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA--------------------------GLGPSKRILGSLLS--- 148 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------------CTTHHHHH---
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC--------------------------CCCCCHHHHHHHHH---
T ss_conf 2222112111000267773610678887664000000--------------------------01000014788887---
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999999983999799999999999987999999999999997299909999989999996335664149999999
Q 002443 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
.+.+.++.
T Consensus 149 ------------------------------------------------------------------------~~~~~~a~ 156 (323)
T d1fcha_ 149 ------------------------------------------------------------------------DSLFLEVK 156 (323)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
T ss_conf ------------------------------------------------------------------------65799999
Q ss_pred HHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 999999985899--999999999999973996999999999986099999999999999998699899999999999609
Q 002443 287 AYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (921)
Q Consensus 287 ~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (921)
..+.+++..+|. .+.++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+++|+++++++
T Consensus 157 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 157 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999713012221110368888888877550021112222222221110133301221111013788877899884
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999999999991999999999999999299979999
Q 002443 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (921)
Q Consensus 365 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 405 (921)
|+++.++..+|.++..+|++++|+..|+++++++|++...+
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 277 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 32499999999999987899999999999997097570011
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.8e-22 Score=159.69 Aligned_cols=207 Identities=14% Similarity=0.058 Sum_probs=175.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 78436989999999996899999999999999809998899999899999817-99999999999998099978899999
Q 002443 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 44 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 122 (921)
.+.-.+.+-.++..+...+.+++|+..++++++.+|.+..+|..+|.++...+ ++++|+..++++++.+|++..+|..+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~ 118 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 118 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97799999999999995886699999999999879887699999999999837679999999999998877422689887
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999839979999999999963999957688999999988999997099299999999999419999999999999999
Q 002443 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (921)
|.++...|++++|+..+.++++.+|++..+ +..+|.++...+++++|+..++++++++|.+..+|.++|.++.
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a-------~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAKNYHA-------WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 588885053788998875554321004688-------9988778888886678999999999879744999988999998
Q ss_pred HCCC------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 8199------9999999999998399979999999999998799999999999999729990
Q 002443 203 ELMQ------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (921)
Q Consensus 203 ~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 258 (921)
..+. +++|+..+.++++.+|.+..++..++.++...+ .+++...+++++++.|..
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCC
T ss_conf 7456310235477679999999849885699999877988627-188999999999728775
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.9e-22 Score=163.80 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 999889999989999981799999999999998099978899999999998399-7999999999996399995768899
Q 002443 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAESYHKALSADPSYKPAAECL 156 (921)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 156 (921)
+|+..+++..+|.++...+.+++|+..++++++++|++..+|..+|.++...++ +++|+..++++++.+|++..+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a---- 114 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV---- 114 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 9779999999999999588669999999999987988769999999999983767999999999999887742268----
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999889999970992999999999994199999999999999998199999999999999839997999999999999
Q 002443 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (921)
+..+|.++...|++++|+..+.++++.+|.+..+|.++|.++...+++++|+..++++++.+|.+..+|.++|.++.
T Consensus 115 ---~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 115 ---WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 191 (315)
T ss_dssp ---HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf ---98875888850537889988755543210046889988778888886678999999999879744999988999998
Q ss_pred HCCC
Q ss_conf 8799
Q 002443 237 NRGD 240 (921)
Q Consensus 237 ~~g~ 240 (921)
..+.
T Consensus 192 ~~~~ 195 (315)
T d2h6fa1 192 NTTG 195 (315)
T ss_dssp HTTC
T ss_pred HCCC
T ss_conf 7456
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=1.8e-23 Score=170.61 Aligned_cols=266 Identities=9% Similarity=-0.066 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 9999999999998099988999998999998179----------999999999999809997889999999999839979
Q 002443 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (921)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (921)
.++|+.+++++++.+|++..+|..++.++...+. +.+|+..++++++.+|++..++..+|.++...++
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~-- 122 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE-- 122 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS--
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--
T ss_conf 699999999999988785899999999999976500347787789999999999998688867989886489988430--
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCHHHHHH
Q ss_conf 9999999999639999576889999999889999970992999999999994199999999-999999998199999999
Q 002443 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY-YNLGVVYSELMQYDTALG 212 (921)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~ 212 (921)
+++++|+..+++++..+|.+..++ ...|.++...+.+++|+.
T Consensus 123 -------------------------------------~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 123 -------------------------------------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred -------------------------------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf -------------------------------------4289999999999855921211110578999874455289999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999983999799999999999987999999999999997299909999989999996335664149999999999999
Q 002443 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (921)
Q Consensus 213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~a 292 (921)
.++++++.+|.+..++..+|.++..+|++++|...+.++++..|...... ..+. ..+..+++...+.++
T Consensus 166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~-------~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAF-------FTDPNDQSAWFYHRW 234 (334)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHH-------HHCSSCSHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHCCHHHHHHHHHHH
T ss_conf 99998871898799999999999982688989998877677689999999----9998-------824414889999988
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 98589999999999999997399699999999998609999999999999999869989999999999960999999999
Q 002443 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372 (921)
Q Consensus 293 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 372 (921)
+...|.....+..++.++...+++.+|+..+.+++..+|.+..++..+|.++...|++++|+++|+++++++|.....|.
T Consensus 235 l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 235 LLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp HHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 77186605678879999999866999999999887629137999999999998789999999999999987966399999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 002443 373 NLGVVYT 379 (921)
Q Consensus 373 ~la~~~~ 379 (921)
.++..+.
T Consensus 315 ~L~~~~~ 321 (334)
T d1dcea1 315 DLRSKFL 321 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999986
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=1.5e-23 Score=171.18 Aligned_cols=259 Identities=9% Similarity=-0.073 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--H
Q ss_conf 999999999994199999999999999998----------1999999999999998399979999999999998799--9
Q 002443 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSE----------LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD--L 241 (921)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~ 241 (921)
++|+..+++++..+|++..+|..++.++.. .+++++|+.+++++++.+|++..++..+|.++...++ +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999988785899999999999976500347787789999999999998688867989886489988430428
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999999999729990999998999999633566414999999999999998589999999999999997399699999
Q 002443 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (921)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 321 (921)
++|+..+++++..+|.....+. ...+..+...+.+++|+..+++++..+|.+..++..+|.++..+|++++|+.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~------~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWD------YRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHH------HHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred HHHHHHHHHHHHHCCHHHHHHH------HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999999999855921211110------5789998744552899999999887189879999999999998268898999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999860999999999999999986998999999999996099999999999999999199999999999999929997
Q 002443 322 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (921)
Q Consensus 322 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 401 (921)
.+++++...|.....+ ..+...+..+++...+.+++...|.....+..++.++...+++.+|+..+.+++..+|.+
T Consensus 200 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 275 (334)
T d1dcea1 200 QGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC 275 (334)
T ss_dssp CCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 8877677689999999----999882441488999998877186605678879999999866999999999887629137
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999999999990999999999999862099982057659
Q 002443 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
..++..+|.++..+|++++|+++|+++++++|++...+.++
T Consensus 276 ~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 276 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999878999999999999998796639999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3.5e-20 Score=148.56 Aligned_cols=281 Identities=11% Similarity=-0.031 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 8999998999998179999999999999809997-----88999999999983997999999999996399995768899
Q 002443 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (921)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (921)
++....+|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..+++++...+..... ...
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~ 90 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYA 90 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH-HHH
T ss_conf 9999999999998889999999999998548689967999999999999998799999999999999998750114-899
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----
Q ss_conf 99999889999970992999999999994199--------99999999999999819999999999999983999-----
Q 002443 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----- 223 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 223 (921)
...+..++..+...+++..+...+.+++...+ .....+..+|.++...|+++.+...+.++....+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998887887888889999988999999867503412567888998887899981456666899999888766300246
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 79999999999998799999999999999729990999998999999633566414999999999999998589999999
Q 002443 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (921)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 303 (921)
....+...+..+...+++.++...+.++.............. ...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~----------------------------------~~~~ 216 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI----------------------------------SNAN 216 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----------------------------------HHHH
T ss_conf 899998888888764667888899999999998731157269----------------------------------9999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHH
Q ss_conf 999999997399699999999998609999----999999999999869989999999999960------9999999999
Q 002443 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNN 373 (921)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 373 (921)
..++.++...+++++|...+++++...+.+ ...+..+|.++...|++++|+..+++++.. .|....++..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999998604489899999999976224666777889999999987587999999999999887642667479999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999919999999999999992
Q 002443 374 LGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 374 la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
+|.++...|++++|++.+++++++
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999878999999999999997
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1e-18 Score=138.73 Aligned_cols=279 Identities=14% Similarity=0.008 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------C
Q ss_conf 8999999999983997999999999996399995768899999998899999709929999999999941999------9
Q 002443 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------Y 190 (921)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~ 190 (921)
+.....|.++...|++++|+..+++++...|.+.... ...++..+|.++...|++++|+..+++++...+. .
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS--RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 9999999999988899999999999985486899679--99999999999998799999999999999998750114899
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999999981999999999999998399--------9799999999999987999999999999997299909999
Q 002443 191 APAYYNLGVVYSELMQYDTALGCYEKAALERP--------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (921)
...+..++.++...+++..+...+.+++...+ .....+..+|.++...|+++.+...+.++....+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 169 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ- 169 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999888788788888999998899999986750341256788899888789998145666689999988876630024-
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------CHH
Q ss_conf 9899999963356641499999999999999858999999999999999739969999999999860999-------999
Q 002443 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-------CAE 335 (921)
Q Consensus 263 ~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 335 (921)
.....+...+..+...+++.++...+.++...... ...
T Consensus 170 -----------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 170 -----------------------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp -----------------------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf -----------------------------------689999888888876466788889999999999873115726999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHH
Q ss_conf 99999999998699899999999999609999----999999999999919999999999999992------99979999
Q 002443 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTYAEAY 405 (921)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~ 405 (921)
.+..++.++...+++++|..++++++...+.+ ...+.++|.++...|++++|...+++++.. .|....++
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999986044898999999999762246667778899999999875879999999999998876426674799999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999990999999999999862099
Q 002443 406 NNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
..+|.+|..+|++++|++.+++++++.+
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999987899999999999999765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.1e-19 Score=145.22 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 79999999999963999957688999999988999997099299999999999419999999999999999819999999
Q 002443 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (921)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (921)
.+.|+..+++++...+.... ..+.+++.+|.++...|++++|+..|++++.++|+++.+++++|.++..+|++++|+
T Consensus 15 ~e~al~~~~e~l~~~~~~~~---~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDD---ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHH
T ss_conf 99999999999876336999---999999999999998799999999999854349998899960042788877788752
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 999999983999799999999999987999999999999997299909
Q 002443 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (921)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (921)
..|+++++.+|++..++..+|.++..+|++++|+..++++++..|.+.
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 139 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 139 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 344689998761111588899999987667999999999986530007
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=8.1e-19 Score=139.42 Aligned_cols=66 Identities=24% Similarity=0.416 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999989999981799999999999998099978899999999998399799999999999639999
Q 002443 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 104 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 104 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999987999999999998543499988999600427888777887523446899987611
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=6.6e-19 Score=140.01 Aligned_cols=229 Identities=9% Similarity=0.015 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999998099988999998999998179999999999999809997889999999999839979999999999963
Q 002443 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (921)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (921)
+|+++|+++++..|+.+++++.+|.++...+++++| |++++..+|+....+...+.+. ...+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCC
T ss_conf 999999999871999799995199999997629999---9999874930199985799999--99999999999985616
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 99995768899999998899999709929999999999941999999999999999981999999999999998399979
Q 002443 146 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (921)
Q Consensus 146 ~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (921)
...... .......++.++...+.|+.|+..+.++.+.+|.+.
T Consensus 79 ~~~~~~--------------------------------------~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~ 120 (497)
T d1ya0a1 79 RANPNR--------------------------------------SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120 (497)
T ss_dssp SSCTTT--------------------------------------THHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred CCCCCH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 458437--------------------------------------999999999999999999999999999878991139
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999999999879999999999999972999099999899999963356641499999999999999858999999999
Q 002443 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (921)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 305 (921)
..+..+|..+...++.++|...+.+++...+ ..++..+|.++...+++++|+.+|+++++.+|++...++.
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~ 191 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQ 191 (497)
T ss_dssp ----------------------CCHHHHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9999857998758999999999998827889---------9999999999998024789999999999878996599999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999973996999999999986099999999999999998
Q 002443 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (921)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (921)
+|.++...|++.+|+.+|.+++...+..+.++.+++.++.+
T Consensus 192 Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 192 LAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999986999999999999981799978999999999987
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.2e-18 Score=138.31 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999998589999999999999997399699999999998609999999999999999869989999999999
Q 002443 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (921)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (921)
.++.++..+.++....+.+...+..+|..+...+++++|+..+.+++..++ ..++..+|.++...+++++|+.+|+++
T Consensus 101 ~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A 178 (497)
T d1ya0a1 101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHA 178 (497)
T ss_dssp HHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999998789911399999857998758999999999998827889--999999999999802478999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 96099999999999999999199999999999999929997999999999999
Q 002443 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (921)
Q Consensus 361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 413 (921)
++++|+++..++++|.++...|++.+|+.+|.+++...|..+.++.+++.++.
T Consensus 179 ~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98789965999999999998699999999999998179997899999999998
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1.9e-15 Score=116.80 Aligned_cols=96 Identities=11% Similarity=0.145 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-----H
Q ss_conf 99999999986998999999999996099999-------99999999999919999999999999992999799-----9
Q 002443 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE-----A 404 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-----~ 404 (921)
+..+|.++..+|++++|+..|++++...+... ..+...+.++...+++..|...++++++.+|.... .
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~ 240 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 89999999981739999999999998681332455569999999999999846599999999999975977444399999
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHHCC
Q ss_conf 9999999999--099999999999986209
Q 002443 405 YNNLGVLYRD--AGSISLAIDAYEQCLKID 432 (921)
Q Consensus 405 ~~~la~~~~~--~g~~~~A~~~~~~al~l~ 432 (921)
...+..++.. .+.+++|+..|.++.+++
T Consensus 241 l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 999999998368999999999998875468
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=9.8e-14 Score=105.22 Aligned_cols=159 Identities=5% Similarity=-0.016 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHH
Q ss_conf 99999999999999858999-9999999999997399699999999998609999999999999999-869989999999
Q 002443 280 GDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK-DRDNLDKAVECY 357 (921)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~ 357 (921)
+++++|...+++++...|.+ ..++..++......++++.|...|+++++..|.+...+...+.... ..++.+.|...|
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~ 192 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 33899999999999871578699999999999982786889999999998088867999999999987655778999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99996099999999999999999199999999999999929997----99999999999990999999999999862099
Q 002443 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
+++++..|.+...|..++..+...|+++.|...|++++...|.+ ..+|..........|+.+.+...++++.++.|
T Consensus 193 e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99998610038899999999998698689999999999827898689999999999999984999999999999998771
Q ss_pred CCHHH
Q ss_conf 98205
Q 002443 434 DSRNA 438 (921)
Q Consensus 434 ~~~~a 438 (921)
+....
T Consensus 273 ~~~~~ 277 (308)
T d2onda1 273 EEYEG 277 (308)
T ss_dssp TTTSS
T ss_pred CCCCC
T ss_conf 10220
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=1.3e-13 Score=104.49 Aligned_cols=121 Identities=10% Similarity=-0.008 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999999999858999999999999999-739969999999999860999999999999999986998999999999
Q 002443 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYG-EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
+++.|...++++++..|.....+...+.... ..++.+.|...|++++...|.+...+..++..+...|+++.|...|++
T Consensus 149 ~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ 228 (308)
T d2onda1 149 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 86889999999998088867999999999987655778999999999986100388999999999986986899999999
Q ss_pred HHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99609999----9999999999999199999999999999929997
Q 002443 360 ALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (921)
Q Consensus 360 al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 401 (921)
+++..|.+ ...|..........|+.+.+.+.++++.+..|..
T Consensus 229 ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9982789868999999999999998499999999999999877110
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=1.7e-15 Score=117.12 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=7.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999983997999999999996
Q 002443 124 ILYKDEGRLVEAAESYHKALS 144 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~ 144 (921)
.+|...+++++|+..|.++++
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~ 65 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAAD 65 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
T ss_conf 999988699999999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.6e-13 Score=103.75 Aligned_cols=134 Identities=16% Similarity=0.276 Sum_probs=102.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999973996999999999986099999999999999998699899999999999609999999999999999919
Q 002443 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (921)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 382 (921)
+++.|..+...+++++|+..|.++ .+.++.+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999877999999999864---89889999999999998589146787899999985523466788999998542
Q ss_pred CHHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 9999999999999929997----------------99999999999990999999999999862099982057
Q 002443 383 KMDAAAEMIEKAIAANPTY----------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 383 ~~~~A~~~l~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
++++|+..|++++...+.+ .++++++|.++..+|++++|++.+++++++.|+.....
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~ 157 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 157 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 4999999999999867267367899866543630588999999999997899999999999983699804079
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.1e-13 Score=101.89 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 98999999999689999999999999980999889999989999981799999999999998099978899999999998
Q 002443 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (921)
-.++..|..+...|+|++|+..|+++ .+.++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++..
T Consensus 6 ~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 6 ISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999877999999999864---898899999999999985891467878999999855234667889999985
Q ss_pred CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 399799999999999639999
Q 002443 129 EGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~ 149 (921)
+|++++|+..|++++...+.+
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n 103 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGN 103 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTC
T ss_pred HCCHHHHHHHHHHHHHHCCCC
T ss_conf 424999999999999867267
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.56 E-value=5.9e-11 Score=86.53 Aligned_cols=95 Identities=23% Similarity=0.344 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 9999999999998----6998999999999996099999999999999999----1999999999999999299979999
Q 002443 334 AEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAY 405 (921)
Q Consensus 334 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~ 405 (921)
...+..+|..+.. ..+...+..+++.+.+. .+..+..++|.++.. ..++++|+.+|+++.+. .++.+.
T Consensus 142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~ 217 (265)
T d1ouva_ 142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGC 217 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC--CCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC--CCHHHH
T ss_conf 0104455556406887433422000122113232--222332211312126765431034445467665303--689999
Q ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHHCC
Q ss_conf 999999999----099999999999986209
Q 002443 406 NNLGVLYRD----AGSISLAIDAYEQCLKID 432 (921)
Q Consensus 406 ~~la~~~~~----~g~~~~A~~~~~~al~l~ 432 (921)
+++|.+|.. ..++.+|.++|+++.+..
T Consensus 218 ~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 218 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999839997618999999999999876
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.55 E-value=3e-10 Score=81.76 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHH
Q ss_conf 6999999999986099999999999999998----6998999999999996099999999999999999----1999999
Q 002443 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAA 387 (921)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 387 (921)
...+...++.+.+ ..+..+.+.+|.++.. ..++++|+.+|+++.+. .++.+.+++|.+|.. ..++++|
T Consensus 162 ~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A 237 (265)
T d1ouva_ 162 LKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQA 237 (265)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 2200012211323--2222332211312126765431034445467665303--68999999999998399976189999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999929
Q 002443 388 AEMIEKAIAAN 398 (921)
Q Consensus 388 ~~~l~~al~~~ 398 (921)
.++|+++....
T Consensus 238 ~~~~~kAa~~g 248 (265)
T d1ouva_ 238 IENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
T ss_conf 99999999876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.6e-12 Score=97.15 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 69899999999968999999999999998099988999998999998179999999999999809997889999999999
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
++.+...|..++..|+|++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|++..++..+|.++.
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999995899999998660211000113332456788874054212888899999875446687799999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 8399799999999999639999576
Q 002443 128 DEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
..|++++|+..+++++.+.|++...
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~ 114 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDA 114 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9499999999899998729997999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.5e-12 Score=97.24 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=45.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999869989999999999960999999999999999991999999999999999299979999999999999099
Q 002443 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (921)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 417 (921)
...|..++..|+|++|+.+|+++++++|++..+|.++|.++..+|++++|+..++++++++|++..++..+|.++..+|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999958999999986602110001133324567888740542128888999998754466877999999999499
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999999998620999820576
Q 002443 418 ISLAIDAYEQCLKIDPDSRNAGQ 440 (921)
Q Consensus 418 ~~~A~~~~~~al~l~P~~~~a~~ 440 (921)
+++|+..+++++.++|++..+..
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~ 116 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKM 116 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999989999872999799999
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.52 E-value=3.5e-13 Score=101.54 Aligned_cols=164 Identities=16% Similarity=0.045 Sum_probs=121.0
Q ss_pred CCCCEEEEECCCC--CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHH
Q ss_conf 7897189833887--75798899999999967599089982278899789999999999849999977773686790779
Q 002443 656 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 733 (921)
Q Consensus 656 ~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~ 733 (921)
.++.++|+.++|. .|..+.+++++.+++.. +.++++.|.+ .......++..... .. ++|.|.+... ....
T Consensus 288 ~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~--~~~l~~~G~G--~~~~~~~~~~~~~~--~~-~~v~~~~~~~-~~~~ 359 (477)
T d1rzua_ 288 DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL--GGRLVVLGAG--DVALEGALLAAASR--HH-GRVGVAIGYN-EPLS 359 (477)
T ss_dssp CSSSCEEEEESCBSTTTTHHHHHTTHHHHHHT--TCEEEEEECB--CHHHHHHHHHHHHH--TT-TTEEEEESCC-HHHH
T ss_pred CCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH--CCEEEEEECC--CCHHHHHHHHHHHH--CC-CEEEEECCCC-HHHH
T ss_conf 67863899985002158837999999987865--9839999367--74577899998763--58-7278971547-0579
Q ss_pred HHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCC-------------------C
Q ss_conf 9751456588269899-9942189874409968723799656652057876408852114-------------------8
Q 002443 734 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-------------------K 793 (921)
Q Consensus 734 ~~~~~~~D~~ld~~~~-~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~v~-------------------~ 793 (921)
...|..+|+++-|+-+ +.|++.+|||++|+|||+ +++| |++|+|. .
T Consensus 360 ~~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVa-------s~~G-------G~~E~v~d~~~~~~~~~~~~G~l~~~~ 425 (477)
T d1rzua_ 360 HLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVV-------ARTG-------GLADTVIDANHAALASKAATGVQFSPV 425 (477)
T ss_dssp HHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSH-------HHHHHCCBCCHHHHHTTCCCBEEESSC
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEE-------CCCC-------CCCCEEECCCCCCCCCCCCCEEEECCC
T ss_conf 99998385134886535788899999983998999-------0799-------974055248755334678744896999
Q ss_pred CHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9879999999---9714999999999999997430999996999999999999999
Q 002443 794 NEDEYVQLAL---QLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 794 ~~~~y~~~a~---~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 846 (921)
|.+++.+... .+.+|++.+++++.+. + +..|+|+..+.+++++|+++.
T Consensus 426 d~~~la~ai~~~l~~~~~~~~~~~~~~~a---~--~~~fsw~~~a~~~~~lY~~ll 476 (477)
T d1rzua_ 426 TLDGLKQAIRRTVRYYHDPKLWTQMQKLG---M--KSDVSWEKSAGLYAALYSQLI 476 (477)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHH---H--TCCCBHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHH---H--HHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999986007999999999999---9--851899999999999999984
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=2.8e-13 Score=102.16 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 36989999999996899999999999999809998899999899999817999999999999980999788999999999
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (921)
+++.+...|..++..|+|++|+..|+++++.+|.++.++..+|.+|...|++++|+..|+++++++|++..+++.+|.++
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 49999999999998699999999999999859998999981789874100000124788888871887389999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9839979999999999963999957
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKP 151 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~ 151 (921)
..+|++++|+..|++++.+.|+...
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 9879999999999999874955679
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.5e-12 Score=97.24 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 69899999999968999999999999998099988999998999998179999999999999809997889999999999
Q 002443 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (921)
+..+...|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..+.++++++|+++.+++.+|.++.
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999996999999999999886199601343000110110000112100134677740220267788999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 8399799999999999639999576
Q 002443 128 DEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
.+|++++|+..|+++++.+|++...
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~~~ 107 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNPQL 107 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 8127999999999999849898999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=2.7e-13 Score=102.24 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=31.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 89999970992999999999994199999999999999998199999999999999839997999999999999879999
Q 002443 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (921)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 242 (921)
.|..++..|++++|+..|++++..+|.++.+|.++|.+|...|++++|+..|+++++++|++..++..+|.+|..+|+++
T Consensus 10 ~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~ 89 (201)
T d2c2la1 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD 89 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 99999986999999999999998599989999817898741000001247888888718873899999999999879999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999997
Q 002443 243 SAIACYERCLA 253 (921)
Q Consensus 243 ~A~~~~~~al~ 253 (921)
+|+..|+++++
T Consensus 90 ~A~~~~~~al~ 100 (201)
T d2c2la1 90 EAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999987
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.5e-13 Score=101.52 Aligned_cols=174 Identities=12% Similarity=0.074 Sum_probs=127.9
Q ss_pred CCCCCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCC
Q ss_conf 98777897189833887--7579889999999996759908998227889978999999999984999997777368679
Q 002443 652 TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 729 (921)
Q Consensus 652 ~~~~~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~ 729 (921)
.++++++.++++.+++. .|..+.+++++.++.+..|+..+++++++... ..+++.+.+.|.. +++.|+|...
T Consensus 188 ~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~~----~~~~~~~~~~~~~-~~v~~~g~~~- 261 (370)
T d2iw1a1 188 KNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP----RKFEALAEKLGVR-SNVHFFSGRN- 261 (370)
T ss_dssp HTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC----HHHHHHHHHHTCG-GGEEEESCCS-
T ss_pred CCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCC----CCCCCCCCCCCCC-CCCCCCCCCC-
T ss_conf 048886636999985145542033320111233233221000001122222----2322222222222-2222233233-
Q ss_pred CHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCEEECCCCCCCCCCHH--HHHHHCCCCCCCC--CCHHHHHHHHHH
Q ss_conf 07799751456588269899-994218987440996872379965665205--7876408852114--898799999999
Q 002443 730 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLALQ 804 (921)
Q Consensus 730 ~~~~~~~~~~~D~~ld~~~~-~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~--~~l~~~gl~~~v~--~~~~~y~~~a~~ 804 (921)
+....|..+|+++-|+.+ +.+++.+|||++|+|||+ +++|+ .++..-+..-+++ .|.+++++...+
T Consensus 262 --~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~-------s~~~g~~e~i~~~~~G~l~~~~~d~~~la~~i~~ 332 (370)
T d2iw1a1 262 --DVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT-------TAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRK 332 (370)
T ss_dssp --CHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE-------ETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHH
T ss_pred --CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEE-------ECCCCHHHHHCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf --4442223333444322223433113321457703999-------3899718885279836998699999999999999
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 714999999999999997430999996999999999999
Q 002443 805 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 805 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
|.+|++.+++++++.|+.... ++...+.+.+++.|.
T Consensus 333 ll~d~~~~~~~~~~ar~~~~~---~~~~~~~~~~~~ii~ 368 (370)
T d2iw1a1 333 ALTQSPLRMAWAENARHYADT---QDLYSLPEKAADIIT 368 (370)
T ss_dssp HHHCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHH
T ss_conf 976999999999999999998---285479999999984
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.4e-12 Score=97.38 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999998699899999999999609999999999999999919999999999999992999799999999999990
Q 002443 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
-+...|..++..|++++|+.+|+++++.+|.++.++.++|.++..+|++++|+..++++++++|+++.+++++|.++..+
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999699999999999988619960134300011011000011210013467774022026778899999981
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 999999999999862099982057659
Q 002443 416 GSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 416 g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
|++++|+..|+++++++|+++.+..++
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l 111 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGL 111 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 279999999999998498989999999
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.37 E-value=2.8e-12 Score=95.41 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=123.0
Q ss_pred EEEEECCC---CCCCCHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHH
Q ss_conf 18983388---77579889999999996--75990899822788997899999999998499999777736867907799
Q 002443 660 ITFGSFNN---LAKITPKVLQVWARILC--AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 660 ~~~~~~~~---~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~ 734 (921)
+++..+++ ..|..+.+++++..+.. ..|+.+|+++|.+ .+.. ....+.+.. .. .+.+.|.+.++ .++..
T Consensus 250 ~~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~~~~~~~lvi~G~~--~~~~-~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~ 323 (437)
T d2bisa1 250 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPEL-EGWARSLEE-KH-GNVKVITEMLS-REFVR 323 (437)
T ss_dssp EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--CHHH-HHHHHHHHH-TC-TTEEEECSCCC-HHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC--CCCC-CCCHHHHCC-CC-CCCEECCCCCC-HHHHH
T ss_conf 6698730356651258999864102332333332114531022--3333-210022102-32-10000234576-88899
Q ss_pred HHCCCCCEEECCCCC-CCCCCHHHHHHCCCCEEECCCCCCCCCCHHH--HHHHCCCCCCC--CCCHHHHHHHHHHHHC-C
Q ss_conf 751456588269899-9942189874409968723799656652057--87640885211--4898799999999714-9
Q 002443 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHLI--AKNEDEYVQLALQLAS-D 808 (921)
Q Consensus 735 ~~~~~~D~~ld~~~~-~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~--~l~~~gl~~~v--~~~~~~y~~~a~~l~~-d 808 (921)
..+..+|+++-|+.+ +.+++.+|||++|+|||+ +++|+. ++. +-..++ ..|.++..+...++.. |
T Consensus 324 ~~~~~adi~v~~s~~e~~~~~~~Eama~G~Pvi~-------~~~g~~~e~i~--~~~G~~~~~~d~~~la~~i~~ll~~~ 394 (437)
T d2bisa1 324 ELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGGLRDIIT--NETGILVKAGDPGELANAILKALELS 394 (437)
T ss_dssp HHHTTCSEEEECCSCCSSCHHHHHHHTTTCEEEE-------ESCTTHHHHCC--TTTCEEECTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEE-------ECCCCCHHHEE--CCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9876422354446555642689999987998999-------38998077377--89589977999999999999998379
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999743099999699999999999999999
Q 002443 809 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 848 (921)
Q Consensus 809 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 848 (921)
++.+++++++.++... .|+++.++.+++++|+++.+|
T Consensus 395 ~~~~~~~~~~~~~~~~---~~s~~~~a~~~~~iY~~~i~r 431 (437)
T d2bisa1 395 RSDLSKFRENCKKRAM---SFSWEKSAERYVKAYTGSIDR 431 (437)
T ss_dssp TSCTHHHHHHHHHHHH---HSCHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999---699999999999999999986
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.7e-10 Score=83.43 Aligned_cols=139 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 8899999999998399799999999999639999--------57688999999988999997099299999999999419
Q 002443 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSY--------KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (921)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (921)
+..+...|..++..|++++|+..|++++...+.. .........++.++|.++...|++++|+..+++++.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf 99999999999996999999999999988751010003577764064679999999999886421101100000001002
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHH
Q ss_conf 999999999999999819999999999999983999799999999999987999999999-9999972
Q 002443 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC-YERCLAV 254 (921)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~ 254 (921)
|.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+....+...+.... +.+....
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~ 160 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 160 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23103467779999872229999999999997298989999999999999999999999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.35 E-value=1.3e-10 Score=84.34 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 9999999991999999999999999299979999999999999099999999999986209998205
Q 002443 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 438 (921)
.++|.+|..+|++++|+.++++++.++|.+..+++.+|.++..+|++++|+..|+++++++|++..+
T Consensus 68 ~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~ 134 (168)
T d1kt1a1 68 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 8499998776220110002232220131048899988999988278999999999999859898999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.32 E-value=1.1e-10 Score=84.61 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 999999999991999999999999999299979999999999999099999999999986209998205765
Q 002443 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
++.++|.+|..+|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~ 140 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 140 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 996199999984653011101000100000001246776899999689999999999999829898999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.30 E-value=6.7e-11 Score=86.16 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999999987999999999999997299909999989999996335664149999999999999985899999999
Q 002443 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304 (921)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 304 (921)
...+...|..+...|++.+|+..|.++++.. ....+...........|.....+.
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-------------------------EGSRAAAEDADGAKLQPVALSCVL 81 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------HHHHHHSCHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 9999999999999088999999999998741-------------------------111666655778771902399999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999997399699999999998609999999999999999869989999999999960999999999999999991999
Q 002443 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (921)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (921)
++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+.......
T Consensus 82 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 82 NIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999986402101366655443100022367776999999804799999999999985989999999999999999989
Q ss_pred HHHHH
Q ss_conf 99999
Q 002443 385 DAAAE 389 (921)
Q Consensus 385 ~~A~~ 389 (921)
.++.+
T Consensus 162 ~~~~k 166 (169)
T d1ihga1 162 KDKEK 166 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.29 E-value=4.9e-10 Score=80.36 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=29.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999999869989999999999960999999999999999991999999999999999299979999999999999
Q 002443 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (921)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 414 (921)
.++|.+|..++++++|+.+++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+...
T Consensus 68 ~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 68 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 84999987762201100022322201310488999889999882789999999999998598989999999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.29 E-value=1.7e-10 Score=83.46 Aligned_cols=72 Identities=28% Similarity=0.370 Sum_probs=25.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999986998999999999996099999999999999999199999999999999929997999999999
Q 002443 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (921)
Q Consensus 339 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 410 (921)
++|.+|..++++++|+.+++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..
T Consensus 72 Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 72 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 199999984653011101000100000001246776899999689999999999999829898999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.8e-10 Score=83.32 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99989999981799999999999998099978899999999998399799999999999639999576889999999889
Q 002443 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (921)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 164 (921)
+..+|..++..|+|++|+.+|+++++++|++..++..+|.+|..+|++++|+..++++++++|++...+..++.++..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999985999999999999988496458999868899988186077899999999868012788988999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999970992999999999994199
Q 002443 165 TSLKLAGNTQDGIQKYYEALKIDP 188 (921)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p 188 (921)
.++...+++++|+..|++++..++
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 999993889999999999984599
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.24 E-value=1.3e-10 Score=84.25 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 98999999999689999999999999980999889999989999981799999999999998099978899999999998
Q 002443 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 49 ~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (921)
...+..|..++..|++++|+..|++++..+|+++.++..+|.++...+++++|+..|+++++++|++..++..+|.++..
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999876058999988610112111100123354564101258774100000111111000003789999999
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 399799999999999
Q 002443 129 EGRLVEAAESYHKAL 143 (921)
Q Consensus 129 ~g~~~~A~~~~~~al 143 (921)
.|++++|++.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 789999999999981
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.21 E-value=1.3e-10 Score=84.28 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=59.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999986998999999999996099999999999999999199999999999999929997999999999999909
Q 002443 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 416 (921)
.+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...+++++|+..++++++++|++..++..+|.+|..+|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999999987605899998861011211110012335456410125877410000011111100000378999999978
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9999999999986
Q 002443 417 SISLAIDAYEQCL 429 (921)
Q Consensus 417 ~~~~A~~~~~~al 429 (921)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999981
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4.3e-10 Score=80.72 Aligned_cols=93 Identities=26% Similarity=0.365 Sum_probs=31.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHH
Q ss_conf 999999869989999999999960999999999999999991999999999999999299979-------9999999999
Q 002443 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-------EAYNNLGVLY 412 (921)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-------~~~~~la~~~ 412 (921)
+|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|++++|+..++++++++|.+. .++..+|.++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999985999999999999988496458999868899988186077899999999868012788988999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCC
Q ss_conf 99099999999999986209
Q 002443 413 RDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 413 ~~~g~~~~A~~~~~~al~l~ 432 (921)
..++++++|+.+|++++..+
T Consensus 90 ~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCHHHHHHHHHHHHHCC
T ss_conf 99388999999999998459
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.2e-10 Score=82.65 Aligned_cols=102 Identities=10% Similarity=0.007 Sum_probs=47.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHH
Q ss_conf 9999998699899999999999609999999999999999919---9999999999999929997--9999999999999
Q 002443 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRD 414 (921)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~ 414 (921)
++..+...+++++|.+.|++++.++|.++.+++++|.++...+ ++++|+..+++++..+|.. ..+++++|.+|..
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 98873699999999999999883299989999999999998512678999999999998606993199999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 099999999999986209998205765
Q 002443 415 AGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 415 ~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
+|++++|+.+|+++++++|++..+...
T Consensus 85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 731699999999999769098999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3.1e-10 Score=81.68 Aligned_cols=103 Identities=7% Similarity=-0.045 Sum_probs=38.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCC
Q ss_conf 9997399699999999998609999999999999999869---9899999999999609999--9999999999999199
Q 002443 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGK 383 (921)
Q Consensus 309 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 383 (921)
.+...+++++|.+.|++++..+|.++.+++++|.++...+ ++++|+..|++++..+|.. ..+++++|.+|..+|+
T Consensus 8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~ 87 (122)
T d1nzna_ 8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 73699999999999999883299989999999999998512678999999999998606993199999999999999731
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999999999299979999999999
Q 002443 384 MDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (921)
Q Consensus 384 ~~~A~~~l~~al~~~p~~~~~~~~la~~ 411 (921)
+++|+.+++++++++|++..+...++.+
T Consensus 88 ~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 88 YEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 6999999999997690989999999999
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=3.7e-09 Score=74.42 Aligned_cols=170 Identities=17% Similarity=0.140 Sum_probs=122.7
Q ss_pred CCCEEEEECCCC--CCCCHHHHHHHHHHHHHCCCC----EEEEECCCCCCH-H----HHH-------HHHHHHHHCCCCC
Q ss_conf 897189833887--757988999999999675990----899822788997-8----999-------9999999849999
Q 002443 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNS----RLVVKCKPFCCD-S----VRH-------RFLSTLEQLGLES 718 (921)
Q Consensus 657 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~----~l~~~~~~~~~~-~----~~~-------~~~~~~~~~g~~~ 718 (921)
.|..++.++.|+ .|..+..+++|.++|++.|+- .|+.++.|...+ . .+. ++...+...|..
T Consensus 252 ~~~~~il~V~Rld~~KGi~~~l~A~~~~l~~~p~~~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~in~~~~~~~~~- 330 (456)
T d1uqta_ 252 KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWT- 330 (456)
T ss_dssp TTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBC-
T ss_pred CCCEEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-
T ss_conf 8985999937874320658999999999875843146189999748753456889999999999999987652127987-
Q ss_pred CCEEECCCCCCCHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCC-----EEECCCCCCCCCCHHHHHHHCCCCCCC-
Q ss_conf 9777736867907799751456588269899-994218987440996-----872379965665205787640885211-
Q 002443 719 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP-----CVTMAGSVHAHNVGVSLLTKVGLKHLI- 791 (921)
Q Consensus 719 ~rv~~~~~~~~~~~~~~~~~~~D~~ld~~~~-~g~~t~~eal~~G~P-----vvt~~g~~~~~r~~~~~l~~~gl~~~v- 791 (921)
+.+.+.+.++ ..+..+.|+.+|+++-|+-+ +.+.+++|+|++|+| ||. |+++ |.++.+
T Consensus 331 ~~v~~~~~~~-~~~l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~p~~~g~lIl-------S~~~-------G~~~~l~ 395 (456)
T d1uqta_ 331 PLYYLNQHFD-RKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL-------SQFA-------GAANELT 395 (456)
T ss_dssp SEEEECSCCC-HHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE-------ETTB-------GGGGTCT
T ss_pred CEEECCCCCC-HHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEE-------ECCC-------CCHHHHC
T ss_conf 5021158767-88876777530545258765788839999999089888975897-------2897-------8778859
Q ss_pred ------CCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ------4898799999999714-99999999999999743099999699999999999999
Q 002443 792 ------AKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 792 ------~~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 845 (921)
..|.++.++...++.+ +++.++.+.+++++.+.+ +|...|+..+-..++++
T Consensus 396 ~g~lVnP~d~~~~A~ai~~aL~~~~~er~~~~~~~~~~v~~---~~~~~W~~~fl~~l~~~ 453 (456)
T d1uqta_ 396 SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQI 453 (456)
T ss_dssp TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_conf 76998959999999999999749999999999999899997---89999999999998755
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.10 E-value=3e-10 Score=81.75 Aligned_cols=119 Identities=20% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 63356641499999999999999858999999999999999----------73996999999999986099999999999
Q 002443 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG----------EMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (921)
Q Consensus 271 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~~al~~~p~~~~~~~~l 340 (921)
+.+..+...+.+++|+..++++++.+|+++.++.++|.++. ..+.+++|+..|+++++++|++..+++++
T Consensus 2 d~~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l 81 (145)
T d1zu2a1 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI 81 (145)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 71679998736999999999998618831089999999998762133336778878889999999887301205877668
Q ss_pred HHHHHHCCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999998699-----------8999999999996099999999999999999199999999
Q 002443 341 GVIYKDRDN-----------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (921)
Q Consensus 341 a~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 389 (921)
|.+|..+|+ +++|+++|+++++++|++..++..++.+....+.+.++.+
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k 141 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK 141 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999987010113578898867876312110002598889999999999997978999998
|
| >d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.96 E-value=1.3e-08 Score=70.70 Aligned_cols=157 Identities=12% Similarity=0.094 Sum_probs=106.1
Q ss_pred CCCCCCCEEEEECCC---CCCCCHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 877789718983388---77579889999999996--7599089982278899789999999999849999977773686
Q 002443 653 PALTNGFITFGSFNN---LAKITPKVLQVWARILC--AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 727 (921)
Q Consensus 653 ~~~~~~~~~~~~~~~---~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~ 727 (921)
.+++++.+ |..++| +.|..+.+++++..+.. ..|+..|+++|.+ . .......+.+... . .+.+.+.+.+
T Consensus 27 ~~l~~~~~-il~~Grl~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g--~-~~~~~~~~~~~~~-~-~~~~~~~~~~ 100 (196)
T d2bfwa1 27 FGMDEGVT-FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--D-PELEGWARSLEEK-H-GNVKVITEML 100 (196)
T ss_dssp TTCCSCEE-EEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--C-HHHHHHHHHHHHH-C-TTEEEECSCC
T ss_pred HCCCCCCE-EEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEC--C-CCHHHHHHHHHHC-C-CEEEEEEECC
T ss_conf 59799988-99976888110499999999886411257888189999613--5-5213454332211-3-1157753023
Q ss_pred CCCHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHC-CCCCCC--CCCHHHHHHHHH
Q ss_conf 7907799751456588269899-994218987440996872379965665205787640-885211--489879999999
Q 002443 728 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLAL 803 (921)
Q Consensus 728 ~~~~~~~~~~~~~D~~ld~~~~-~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~-gl~~~v--~~~~~~y~~~a~ 803 (921)
+ ..+....|..+|+++-|+.+ +.+++.+|||++|+|||+ ++++.. -.-+ +-..++ ..|.+++++...
T Consensus 101 ~-~~~l~~~~~~~di~v~ps~~e~~~~~~~Eam~~G~pvI~-------~~~~~~-~e~i~~~~g~~~~~~~~~~l~~~i~ 171 (196)
T d2bfwa1 101 S-REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGGL-RDIITNETGILVKAGDPGELANAIL 171 (196)
T ss_dssp C-HHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEE-------ESCHHH-HHHCCTTTCEEECTTCHHHHHHHHH
T ss_pred C-CCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEE-------CCCCCC-CEEECCCCEEEECCCCHHHHHHHHH
T ss_conf 3-211000012323344322211233220133314860465-------178853-2010287314678999999999999
Q ss_pred HHHC-CHHHHHHHHHHHHHHHH
Q ss_conf 9714-99999999999999743
Q 002443 804 QLAS-DVTALANLRMSLRDLMS 824 (921)
Q Consensus 804 ~l~~-d~~~~~~~r~~~~~~~~ 824 (921)
.+.. |++.+..++...|++..
T Consensus 172 ~~l~~~~~~~~~~~~~a~~~a~ 193 (196)
T d2bfwa1 172 KALELSRSDLSKFRENCKKRAM 193 (196)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9995799999999999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.95 E-value=1.1e-09 Score=77.97 Aligned_cols=134 Identities=9% Similarity=-0.040 Sum_probs=109.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99997399699999999998609999999999999999869989999999999960999999999999999991999999
Q 002443 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387 (921)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 387 (921)
.-.+..|++++|+..++++++.+|++...+..++.++...|++++|++.|+++++++|++...+..++.++...+..+++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988889999999999999978999999999999999879999999999999986997389999999999834663789
Q ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 999999999-299979999999999999099999999999986209998205765
Q 002443 388 AEMIEKAIA-ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 388 ~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
.....+... ..|.....+...+..+...|+.++|.+.++++.+..|+....+.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9875444203586479999999999996799899999999998339999810015
|
| >d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: First mannosyl transferase WbaZ species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.92 E-value=7.2e-09 Score=72.51 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=97.2
Q ss_pred CCCCCEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHH
Q ss_conf 7789718983388--77579889999999996759908998227889978999999999984999997777368679077
Q 002443 655 LTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 655 ~~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~ 732 (921)
..+.+++ +++| +.|....+++++ ..+|+..|+++|.+...+ ....+.+.+...+. ++|+|+|.++ ..+
T Consensus 10 ~~~~~~l--~iGrl~~~K~~~~~i~a~----~~l~~~~l~ivg~~~~~~-~~~~~~~~~~~~~~--~~v~~~g~~~-~~~ 79 (166)
T d2f9fa1 10 CYGDFWL--SVNRIYPEKRIELQLEVF----KKLQDEKLYIVGWFSKGD-HAERYARKIMKIAP--DNVKFLGSVS-EEE 79 (166)
T ss_dssp CCCSCEE--EECCSSGGGTHHHHHHHH----HHCTTSCEEEEBCCCTTS-THHHHHHHHHHHSC--TTEEEEESCC-HHH
T ss_pred CCCCEEE--EEECCCCCCCHHHHHHHH----HHHCCCEEEEEEECCCCC-CHHHHHHHHCCCCC--CCEEEEECCC-CCC
T ss_conf 9999999--992375434999999999----983397499997224454-22333322023566--7588742122-111
Q ss_pred HHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCEEECCCCCCCCCCHHHH-HHHCCCCCCC-CCCHHHHHHHHHHHHCCH
Q ss_conf 99751456588269899-99421898744099687237996566520578-7640885211-489879999999971499
Q 002443 733 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLI-AKNEDEYVQLALQLASDV 809 (921)
Q Consensus 733 ~~~~~~~~D~~ld~~~~-~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~-l~~~gl~~~v-~~~~~~y~~~a~~l~~d~ 809 (921)
....|..+|+++-|+.+ +.+.+.+|||++|+|||+ ++.+..- +-.-+-..++ -.|.+++++....+..|+
T Consensus 80 ~~~~~~~ad~~i~ps~~e~~~~~~~Ea~~~g~pvi~-------s~~~~~~e~i~~~~~g~~~~~d~~~~~~~i~~l~~~~ 152 (166)
T d2f9fa1 80 LIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIA-------VNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNP 152 (166)
T ss_dssp HHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEE-------ESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-------ECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCH
T ss_conf 222222222233212211233221101122332205-------5278640330488412468999999999999998099
Q ss_pred HHH
Q ss_conf 999
Q 002443 810 TAL 812 (921)
Q Consensus 810 ~~~ 812 (921)
+.+
T Consensus 153 ~~~ 155 (166)
T d2f9fa1 153 DKF 155 (166)
T ss_dssp TTT
T ss_pred HHH
T ss_conf 999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.90 E-value=2.5e-09 Score=75.55 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 9999999999919999999999999992999-----------799999999999990999999999999862099982
Q 002443 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-----------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
++.++|.+|..+|++++|+..+++++.+.+. ...+++++|.+|..+|++++|+..|++++++.|+..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999982863001576643553043100245544311278775269999988888888999999998668742
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.88 E-value=7.6e-09 Score=72.37 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=93.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999869989999999999960999999999999999991999999999999999299979999999999999099999
Q 002443 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (921)
Q Consensus 341 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (921)
+.-.+..|++++|+..++++++.+|++...+..++.++...|++++|+..++++++++|+....+..++.++...+..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 89998888999999999999997899999999999999987999999999999998699738999999999983466378
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999862099982057659999541258992899999999
Q 002443 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463 (921)
Q Consensus 421 A~~~~~~al~l~P~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 463 (921)
+...+.+.....+. ......+..+..+...|+.+++.+....
T Consensus 83 a~~~~~~~~~~~~p-~~~~~~l~~a~~~~~~gd~~~A~~~~~~ 124 (264)
T d1zbpa1 83 FAQGAATAKVLGEN-EELTKSLVSFNLSMVSQDYEQVSELALQ 124 (264)
T ss_dssp HTTSCCCEECCCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99875444203586-4799999999999967998999999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.87 E-value=5.8e-09 Score=73.16 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=5.9
Q ss_pred HHHHHHCCCHHHHHHHHHH
Q ss_conf 9999987999999999999
Q 002443 232 GVIYKNRGDLESAIACYER 250 (921)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~ 250 (921)
|.+|..+|++++|+..|++
T Consensus 107 g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 107 ALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999988888888999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.67 E-value=6.9e-07 Score=59.17 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999999999199999999999999929997999999999999909999999999998
Q 002443 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
.++..++.++...|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999999988799057899999999849851999999999999855799999999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.1e-07 Score=64.56 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 78899999999998399799999999999639999576889999999889999970992999999999994199999999
Q 002443 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (921)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (921)
+++-.+.+|.+++..|++.+|+..|+++++..|.........+.++.++|.++...|++++|+..++++++++|++..++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 69999999999999779999999999999988653014764789999872688865773988878877988692979999
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999998199
Q 002443 195 YNLGVVYSELMQ 206 (921)
Q Consensus 195 ~~la~~~~~~g~ 206 (921)
.+++.+...+++
T Consensus 84 ~Nl~~~~~~l~k 95 (95)
T d1tjca_ 84 GNLKYFEYIMAK 95 (95)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998674
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.55 E-value=7.1e-07 Score=59.11 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999999998199999999999999839997999999999999879999999999999
Q 002443 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (921)
.++..++.++...|++++|+.++++++..+|.+..++..++.++...|++.+|+..|+++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999999988799057899999999849851999999999999855799999999999
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=98.12 E-value=0.0001 Score=44.58 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=108.7
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 78971898338877579889999999996759908998227889978999999999984999997777368679077997
Q 002443 656 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 656 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~ 735 (921)
....+++.++.......+........++++.+..++|..+..... .....+...+.. . .+++|.+..++| +.+.+
T Consensus 286 ~~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~-~-~~~Nv~~~~~~P-q~~lL- 360 (473)
T d2pq6a1 286 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVI-GGSVIFSSEFTN-E-IADRGLIASWCP-QDKVL- 360 (473)
T ss_dssp CTTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGST-TTGGGSCHHHHH-H-HTTTEEEESCCC-HHHHH-
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCCCCCCHH-H-CCCCEEEEEECC-HHHHH-
T ss_conf 888603313575335548999999999986697399998168765-521037620002-2-147668863088-79996-
Q ss_pred HCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHCCHHHHH
Q ss_conf 51456588269899994218987440996872379965665205787640885211--4898799999999714999999
Q 002443 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 736 ~~~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d~~~~~ 813 (921)
....|++|+ ..+|.+|+.||++.|||+|.++--.=.-+.+.-+-..+|..-.+ --+.++..+...++.+|+.. +
T Consensus 361 ~hp~~~~fI---tHGG~~s~~Eal~~GVP~lv~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~ai~~vl~d~~~-~ 436 (473)
T d2pq6a1 361 NHPSIGGFL---THCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDKG-K 436 (473)
T ss_dssp TSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHHH-H
T ss_pred CCCCCCEEE---ECCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCHH-H
T ss_conf 477675999---568840899999859998965641121889999999717378618973899999999999769768-9
Q ss_pred HHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999---743099999699999999999999
Q 002443 814 NLRMSLRD---LMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 814 ~~r~~~~~---~~~~~~~~~~~~~~~~~e~~~~~~ 845 (921)
+.|+++++ ... ..+-+.....+.+|++.+++
T Consensus 437 ~~r~~a~~l~~~~~-~a~~~gg~s~~~~~~~i~~~ 470 (473)
T d2pq6a1 437 KMKQKAMELKKKAE-ENTRPGGCSYMNLNKVIKDV 470 (473)
T ss_dssp HHHHHHHHHHHHHH-HHTSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999999-98757997899999999999
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=97.97 E-value=0.00031 Score=41.35 Aligned_cols=152 Identities=15% Similarity=0.062 Sum_probs=99.2
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 78971898338877579889999999996759908998227889978999999999984999997777368679077997
Q 002443 656 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 656 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~ 735 (921)
+...+++.+++......+..++.....+...+..++|....... ..+....... .+.++.+.++++ +.+ +-
T Consensus 263 ~~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~-~~l~~~~~~~------~~~nv~~~~~~p-q~~-lL 333 (450)
T d2c1xa1 263 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKAR-VHLPEGFLEK------TRGYGMVVPWAP-QAE-VL 333 (450)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGG-GGSCTTHHHH------HTTTEEEESCCC-HHH-HH
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCHHHHHH------CCCCCCCCCCCC-HHH-HH
T ss_conf 86421442144355689999999999998448808999777753-4487034442------235401554678-376-65
Q ss_pred HCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHCCHHHH
Q ss_conf 51456588269899994218987440996872379965665205787640885211---489879999999971499999
Q 002443 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI---AKNEDEYVQLALQLASDVTAL 812 (921)
Q Consensus 736 ~~~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~v---~~~~~~y~~~a~~l~~d~~~~ 812 (921)
.+..+|+|+ ..+|.+|+.||++.|||+|.++...=.-..++-+-+..|...-+ .-|.++..+...++.+|+.+.
T Consensus 334 ~hp~~~~fI---tHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~t~~~l~~ai~~vL~d~~y~ 410 (450)
T d2c1xa1 334 AHEAVGAFV---THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGK 410 (450)
T ss_dssp TSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHHHH
T ss_pred CCCCEEEEE---CCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 267416997---06883079999985999896354000089999999970908980389838999999999996194799
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 002443 813 ANLRMSLR 820 (921)
Q Consensus 813 ~~~r~~~~ 820 (921)
+.|++++
T Consensus 411 -~~~~r~~ 417 (450)
T d2c1xa1 411 -KLRENLR 417 (450)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
T ss_conf -9999999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.94 E-value=0.00027 Score=41.78 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=3.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q 002443 418 ISLAIDAYEQC 428 (921)
Q Consensus 418 ~~~A~~~~~~a 428 (921)
..+|+.+|+++
T Consensus 111 ~~~A~~~~~~A 121 (133)
T d1klxa_ 111 EKQAVKTFEKA 121 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.86 E-value=0.0005 Score=39.96 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHH
Q ss_conf 96999999999986099999999999999998----6998999999999996099999999999999999----199999
Q 002443 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDA 386 (921)
Q Consensus 315 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~ 386 (921)
+.++|+.+++++.+. .++.+.+.+|.+|.. ..++++|+++|+++.+. .++.+...+|.+|.. ..+.++
T Consensus 38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 899999987654113--312555567875330135310357888887500025--7406778999999829846778999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999992
Q 002443 387 AAEMIEKAIAA 397 (921)
Q Consensus 387 A~~~l~~al~~ 397 (921)
|+.+|+++.+.
T Consensus 114 A~~~~~~Aa~~ 124 (133)
T d1klxa_ 114 AVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 99999999987
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.83 E-value=0.00063 Score=39.30 Aligned_cols=162 Identities=8% Similarity=0.004 Sum_probs=95.9
Q ss_pred CCCEEEEECCCCCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 897189833887757-9889999999996759908998227889978999999999984999997777368679077997
Q 002443 657 NGFITFGSFNNLAKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 657 ~~~~~~~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~ 735 (921)
...+++.++...... ...........+...+...++..+... ...+..+++|.+.++++ ..+.
T Consensus 220 ~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~v~i~~~~p-~~~l-- 283 (391)
T d1pn3a_ 220 GSTPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWAD-------------LVLPDDGADCFVVGEVN-LQEL-- 283 (391)
T ss_dssp SSCCEEEECTTCCSTHHHHHHHHHHHHHHHTTCCEEEECTTTT-------------CCCSSCCTTCCEESSCC-HHHH--
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC-------------CCCCCCCCCEEEECCCC-HHHH--
T ss_conf 8972787224312232789999999999856977999436433-------------34456889889954468-7999--
Q ss_pred HCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCC--CC-CCCCCHHHHHHHCCCCCCCC---CCHHHHHHHHHHHHCCH
Q ss_conf 51456588269899994218987440996872379--96-56652057876408852114---89879999999971499
Q 002443 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SV-HAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDV 809 (921)
Q Consensus 736 ~~~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g--~~-~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d~ 809 (921)
+..+|+|+ ..+|.+|++|||+.|+|+|.++- +. ...+.-|..+...|..-.+. -+.++..+...++.+|
T Consensus 284 -l~~a~~~v---~hgG~~t~~Eal~~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~~l~~~~~~~~~l~~~i~~~l~~- 358 (391)
T d1pn3a_ 284 -FGRVAAAI---HHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAP- 358 (391)
T ss_dssp -HTTSSCEE---EESCHHHHHHHHHHTCCEEEECSSCCBTTBCCHHHHHHHHHTSEEEECCSSCCHHHHHHHHHHHTST-
T ss_pred -HHHCCEEE---ECCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCH-
T ss_conf -84254898---5274379999998288689933556774529999999998798897685789999999999998399-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999997430999996999999999999
Q 002443 810 TALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 810 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 843 (921)
+. |+++++....-.--...+-++.+|+..+
T Consensus 359 ~~----r~~a~~~a~~~~~~g~~~aa~~i~~~l~ 388 (391)
T d1pn3a_ 359 EI----RARATTVADTIRADGTTVAAQLLFDAVS 388 (391)
T ss_dssp TH----HHHHHHHGGGSCSCHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99----9999999999885279999999999987
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.83 E-value=0.00075 Score=38.79 Aligned_cols=158 Identities=9% Similarity=-0.006 Sum_probs=95.6
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHC
Q ss_conf 97189833887757988999999999675990899822788997899999999998499999777736867907799751
Q 002443 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 737 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~ 737 (921)
..+++.++.... ......+.....+...+...+|+.+.... ...-.+++|++.++++ ..+. +
T Consensus 238 ~~~i~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~-------------~~~~~~~nv~~~~~~p-~~~~---l 299 (401)
T d1iira_ 238 PPPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL-------------VLPDDGADCFAIGEVN-HQVL---F 299 (401)
T ss_dssp SCCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC-------------CCSSCGGGEEECSSCC-HHHH---G
T ss_pred CCEEEECCCCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCCC-------------CCCCCCCCEEEEECCC-HHHH---H
T ss_conf 975997157546-65689999999999769807984267764-------------2335789789970258-7999---9
Q ss_pred CCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHCCHHHHHH
Q ss_conf 45658826989999421898744099687237996566520578764088521148---987999999997149999999
Q 002443 738 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALAN 814 (921)
Q Consensus 738 ~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~~ 814 (921)
..+|+|+ ..+|.+|+.||++.|+|+|.++-.. -...-+..+...|..-.+.. |.++..+...++.+ ++.+++
T Consensus 300 ~~~~~~V---~hgG~~t~~Eal~~GvP~v~~P~~~-DQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ai~~~l~-~~~~~~ 374 (401)
T d1iira_ 300 GRVAAVI---HHGGAGTTHVAARAGAPQILLPQMA-DQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALT-PETHAR 374 (401)
T ss_dssp GGSSEEE---ECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHH
T ss_pred HHCCEEE---ECCCCHHHHHHHHHCCCEEECCCCC-CHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHC-HHHHHH
T ss_conf 5458999---6377169999998199999806614-1799999999879888768478999999999999969-799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999743099999699999999999
Q 002443 815 LRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 815 ~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 842 (921)
.++ +.+++. -.....-++.+++..
T Consensus 375 a~~-~~~~~~---~~~~~~aa~~i~~~i 398 (401)
T d1iira_ 375 ATA-VAGTIR---TDGAAVAARLLLDAV 398 (401)
T ss_dssp HHH-HHHHSC---SCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHH---HCCHHHHHHHHHHHH
T ss_conf 999-999987---508399999999998
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.74 E-value=0.001 Score=37.94 Aligned_cols=159 Identities=7% Similarity=-0.068 Sum_probs=93.5
Q ss_pred CCEEEEECCCCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHH
Q ss_conf 9718983388775798-899999999967599089982278899789999999999849999977773686790779975
Q 002443 658 GFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 658 ~~~~~~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~ 736 (921)
..++|.+++......+ .+.+.....+...|...++..+... ...+-.+++|.+.++++ ..+.+
T Consensus 237 ~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~~p-~~~ll-- 300 (401)
T d1rrva_ 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTE-------------LVLPDDRDDCFAIDEVN-FQALF-- 300 (401)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTT-------------CCCSCCCTTEEEESSCC-HHHHG--
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC-------------CCCCCCCCCEEEEECCC-CHHHH--
T ss_conf 983999878644578899999999998626974899505443-------------45545789889973148-17776--
Q ss_pred CCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHCCHHHHH
Q ss_conf 145658826989999421898744099687237996566520578764088521148---98799999999714999999
Q 002443 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 737 ~~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~ 813 (921)
..+|+|+ ..+|.+|+.||++.|||+|.++-..- ...-+..+...|..-.+-. |.++..+...++. |++.++
T Consensus 301 -~~~~~~I---~hgG~~t~~Eal~~GvP~l~~P~~~D-Q~~na~~v~~~G~g~~l~~~~~~~~~L~~ai~~vl-~~~~r~ 374 (401)
T d1rrva_ 301 -RRVAAVI---HHGSAGTEHVATRAGVPQLVIPRNTD-QPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVL-APETRA 374 (401)
T ss_dssp -GGSSEEE---ECCCHHHHHHHHHHTCCEEECCCSBT-HHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHHT-SHHHHH
T ss_pred -HHCCEEE---ECCCCHHHHHHHHHCCCEEEECCCCC-HHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHH-CHHHHH
T ss_conf -2124888---61772489999983999898066120-89999999987988975747899999999999984-979999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999743099999699999999999
Q 002443 814 NLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 814 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 842 (921)
+.+ ++.+++. --....-+..+|+..
T Consensus 375 ~a~-~~~~~~~---~~g~~~aa~~ie~~~ 399 (401)
T d1rrva_ 375 RAE-AVAGMVL---TDGAAAAADLVLAAV 399 (401)
T ss_dssp HHH-HHTTTCC---CCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHH---HCCHHHHHHHHHHHH
T ss_conf 999-9999875---517999999999985
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.70 E-value=0.00041 Score=40.51 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 999999999999919---99999999999999299979-999999999999099999999999986209998205
Q 002443 368 SQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 368 ~~~~~~la~~~~~~g---~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 438 (921)
..+.+++|+++.+.. +.++++..++.++..+|... +.++.+|..|.++|++++|..+++++++++|++..+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 101999999998279688999999999999854950599999999999998732999999999998239984999
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.66 E-value=0.00064 Score=39.25 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999998099978-899999999998399799999999999639999
Q 002443 100 LAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 100 ~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
+++..++.+++.+|.+. +.++.+|..|++.|++++|..++++++++.|++
T Consensus 56 ~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 56 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999854950599999999999998732999999999998239984
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=97.50 E-value=0.00061 Score=39.39 Aligned_cols=145 Identities=13% Similarity=0.029 Sum_probs=87.3
Q ss_pred CCCEEEEEC-CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--CHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHH
Q ss_conf 897189833-8877579889999999996759908998227889--9789999999999849999977773686790779
Q 002443 657 NGFITFGSF-NNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 733 (921)
Q Consensus 657 ~~~~~~~~~-~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~ 733 (921)
...+++.++ .......++.+......+...+...+|....... .+...+. ... ++.+.+..+.+ +.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~n~~v~~~~p--q~~ 342 (461)
T d2acva1 273 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEW----MEL----EGKGMICGWAP--QVE 342 (461)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHH----HHH----HCSEEEESSCC--HHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH----HCC----CCCEEEEECCC--HHH
T ss_conf 65303452134435799999999999998537607998404545588630333----125----78738985187--788
Q ss_pred HHHCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCCC---------CCCHHHHHHHHHH
Q ss_conf 9751456588269899994218987440996872379965665205787640885211---------4898799999999
Q 002443 734 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI---------AKNEDEYVQLALQ 804 (921)
Q Consensus 734 ~~~~~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~v---------~~~~~~y~~~a~~ 804 (921)
...+..||+|+ ..+|.+|+.||++.|||+|.++--.=.-..+.-+-...|+.-.+ .-+.++..+...+
T Consensus 343 ~l~~p~~~~fI---tHGG~gs~~eAl~~GVP~l~~P~~~DQ~~nA~rlve~~G~G~~l~~~~~~~~~~~t~~~l~~a~~~ 419 (461)
T d2acva1 343 VLAHKAIGGFV---SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKD 419 (461)
T ss_dssp HHHSTTEEEEE---ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHH
T ss_pred HHHCCCCCEEE---ECCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 88556577798---338844899999859998967760002889999999849367841531136785479999999999
Q ss_pred HHCC-HHHHHH
Q ss_conf 7149-999999
Q 002443 805 LASD-VTALAN 814 (921)
Q Consensus 805 l~~d-~~~~~~ 814 (921)
+.++ ..++++
T Consensus 420 vl~~d~~~r~~ 430 (461)
T d2acva1 420 LMDKDSIVHKK 430 (461)
T ss_dssp HTCTTCTHHHH
T ss_pred HHHCCHHHHHH
T ss_conf 96088999999
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.004 Score=33.87 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHCCCCCEEECCCCC-C
Q ss_conf 988999999999675990899822788997899999999998499999777736867907799751456588269899-9
Q 002443 672 TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-A 750 (921)
Q Consensus 672 ~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~~D~~ld~~~~-~ 750 (921)
...+...+.+.+...+.....+...+... .......... .. ...+...+.+.. ....+..||+++ . +
T Consensus 189 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~--~~~~~~~~~~--~~-~~~~~v~~f~~~---~~~lm~~adl~I----t~~ 256 (351)
T d1f0ka_ 189 ARILNQTMPQVAAKLGDSVTIWHQSGKGS--QQSVEQAYAE--AG-QPQHKVTEFIDD---MAAAYAWADVVV----CRS 256 (351)
T ss_dssp CHHHHHHHHHHHHHHGGGEEEEEECCTTC--HHHHHHHHHH--TT-CTTSEEESCCSC---HHHHHHHCSEEE----ECC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHCC--CC-CCCCEEEEEHHH---HHHHHHHCCHHH----CCC
T ss_conf 34668888876665245530454213410--4443343202--33-223155543055---899997474222----055
Q ss_pred CCCCHHHHHHCCCCEEECCCCCC--CCCCHHHHHHHCCCCCCCCCCH--HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
Q ss_conf 94218987440996872379965--6652057876408852114898--7999999997149999999999999974309
Q 002443 751 GTTTTCESLYMGVPCVTMAGSVH--AHNVGVSLLTKVGLKHLIAKNE--DEYVQLALQLASDVTALANLRMSLRDLMSKS 826 (921)
Q Consensus 751 g~~t~~eal~~G~Pvvt~~g~~~--~~r~~~~~l~~~gl~~~v~~~~--~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~ 826 (921)
|++|+.|++.+|+|+|..|=... ....-|-.+...|+...+-.+. .+-+..++.-. +++.+..++.++++.. .
T Consensus 257 G~~T~~Eal~~g~P~I~iP~~~~~~~Q~~NA~~l~~~G~~~~~~~~~~~~e~l~~~l~~l-~~~~~~~~~~~~~~~~--~ 333 (351)
T d1f0ka_ 257 GALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW-SRETLLTMAERARAAS--I 333 (351)
T ss_dssp CHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC-CHHHHHHHHHHHHHTC--C
T ss_pred CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHCCHHHHHHHHHHH-CHHHHHHHHHHHHCCC--C
T ss_conf 423778888717854654154677669999999998899899223319999999999863-9999999999987269--9
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 9999699999999999
Q 002443 827 PVCDGQNFALGLESTY 842 (921)
Q Consensus 827 ~~~~~~~~~~~~e~~~ 842 (921)
+ -..++.+..+|+.-
T Consensus 334 ~-~~a~~i~~~i~~l~ 348 (351)
T d1f0ka_ 334 P-DATERVANEVSRVA 348 (351)
T ss_dssp T-THHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHH
T ss_conf 5-69999999999998
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.24 E-value=0.0043 Score=33.70 Aligned_cols=149 Identities=15% Similarity=0.024 Sum_probs=93.9
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH-----------HHHHHHHHHHCCCCCCCEEEC
Q ss_conf 789718983388775798899999999967599089982278899789-----------999999999849999977773
Q 002443 656 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV-----------RHRFLSTLEQLGLESLRVDLL 724 (921)
Q Consensus 656 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~~rv~~~ 724 (921)
..+.+++.+++......+..+......+...+...+|........... ...+-.-+... ...+.|.+.
T Consensus 261 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~ 339 (471)
T d2vcha1 261 PLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLER-TKKRGFVIP 339 (471)
T ss_dssp CTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHH-TTTTEEEEE
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCHHHHH-CCCCCEEEC
T ss_conf 7754420025654478989999999877860687699853666655310013444420343178025665-167875521
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCCC------CCCHHHH
Q ss_conf 6867907799751456588269899994218987440996872379965665205787640885211------4898799
Q 002443 725 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI------AKNEDEY 798 (921)
Q Consensus 725 ~~~~~~~~~~~~~~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~v------~~~~~~y 798 (921)
+++| +.+.+ .+..||+|+ ..+|.+|+.||++.|||+|.++--.=.-..+.-+-..+|..-.+ .-+.++.
T Consensus 340 ~w~P-q~~lL-~hp~~~~fV---tHGG~gS~~EAl~~GvP~v~~P~~~DQ~~nA~rv~e~lG~Gv~l~~~~~~~~t~~~l 414 (471)
T d2vcha1 340 FWAP-QAQVL-AHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEV 414 (471)
T ss_dssp SCCC-HHHHH-HSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHH
T ss_pred CCCC-HHHHH-CCCCCCEEE---ECCCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCHHHH
T ss_conf 6578-99986-576578897---068842899999859998971440122889999999720489972487886979999
Q ss_pred HHHHHHHHCCHH
Q ss_conf 999999714999
Q 002443 799 VQLALQLASDVT 810 (921)
Q Consensus 799 ~~~a~~l~~d~~ 810 (921)
.+...++.+|++
T Consensus 415 ~~ai~~vl~~~~ 426 (471)
T d2vcha1 415 ARVVKGLMEGEE 426 (471)
T ss_dssp HHHHHHHHTSTH
T ss_pred HHHHHHHHCCCH
T ss_conf 999999967947
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.014 Score=30.18 Aligned_cols=332 Identities=10% Similarity=-0.056 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHCCCCHHHHHHHH-
Q ss_conf 369899999999968999999999999998099988999998999998--17999999999999980999788999999-
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM--QNMGRLAFDSFSEAVKLDPQNACAHTHCG- 123 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la- 123 (921)
.-+..+..|...+..+++.++.....++ +.+|-.+ +...-..... ..... .+...++.+|+.+.......
T Consensus 5 ~~r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~p--Yl~~~~l~~~~~~~~~~----~i~~Fl~~~p~~P~~~~lr~~ 77 (450)
T d1qsaa1 5 EQRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYP--YLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSR 77 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHH--HHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCCHH--HHHHHHHHHCCCCCCHH----HHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999999878989999998560-4798779--99999987351569999----999999878998227999999
Q ss_pred --HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf --999983997999999999996399995768899999998899999709929999999999941999999999999999
Q 002443 124 --ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (921)
Q Consensus 124 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (921)
..+...+++...+..+ ...|.+... -...+......|+..+|...+..+-......+....
T Consensus 78 ~l~~L~~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~------ 140 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFS----PEKPGTTEA-------QCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACD------ 140 (450)
T ss_dssp HHHHHHHTTCHHHHHHHC----CSCCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHH------
T ss_pred HHHHHHHCCCHHHHHHHC----CCCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH------
T ss_conf 999987656889999766----689999999-------999999998759848899999999854787835899------
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98199999999999999839997999999999999879999999999999972999099999899999963356641499
Q 002443 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281 (921)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~ 281 (921)
..+........-....+..........|++..|...+.. .+.... .++.....+. .+
T Consensus 141 ----------~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~----l~~~~~---~~~~a~~~l~------~~ 197 (450)
T d1qsaa1 141 ----------KLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ----MPADYQ---TIASAIISLA------NN 197 (450)
T ss_dssp ----------HHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT----CCGGGH---HHHHHHHHHH------HC
T ss_pred ----------HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH----CCHHHH---HHHHHHHHHH------HC
T ss_conf ----------999998744789899999999999886981569988751----785589---9999999988------58
Q ss_pred HHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHCCCHHHHHH
Q ss_conf 99999999999985899999--99999999997399699999999998609999999999999----9998699899999
Q 002443 282 INQGVAYYKKALYYNWHYAD--AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV----IYKDRDNLDKAVE 355 (921)
Q Consensus 282 ~~~A~~~~~~al~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~----~~~~~g~~~~A~~ 355 (921)
..... ......+.... .....+..-....+.+.|...+.......+.....+..... .+...+..+.+..
T Consensus 198 p~~~~----~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 273 (450)
T d1qsaa1 198 PNTVL----TFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (450)
T ss_dssp GGGHH----HHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred HHHHH----HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 57588----88753788701117899999987424855799998752120235679999999999999987686399999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999609999999999999999919999999999999992999799999999999990999999999999862
Q 002443 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 356 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
.+........+.......++ .....+++..+...+...-..........+.+|..+..+|+.++|...|..+..
T Consensus 274 ~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 274 WRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99860123466699999999-998829869999999865846242899999999999983981568999999845
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.035 Score=27.53 Aligned_cols=274 Identities=11% Similarity=-0.116 Sum_probs=121.9
Q ss_pred HHHHHHHCCCCHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 999998099988999998---99999817999999999999980999788999999999983997999999999996399
Q 002443 71 YEIVLEKDSGNVEAHIGK---GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (921)
Q Consensus 71 ~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 147 (921)
+...++.+|+.+...... -..+...++++..+..+ ...|.+.......+.+....|+..+|...+..+.....
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHC----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999878998227999999999987656889999766----68999999999999999875984889999999985478
Q ss_pred CCHHHHHHHHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9957688999999-----------98899999709929999999999941999999999999999981999999999999
Q 002443 148 SYKPAAECLAIVL-----------TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (921)
Q Consensus 148 ~~~~~~~~la~~~-----------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (921)
..+.....+...+ ..........+++..|...+... .++..........+... ..... .
T Consensus 134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l---~~~~~~~~~a~~~l~~~---p~~~~----~ 203 (450)
T d1qsaa1 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM---PADYQTIASAIISLANN---PNTVL----T 203 (450)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGGGHHHHHHHHHHHHC---GGGHH----H
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC---CHHHHHHHHHHHHHHHC---HHHHH----H
T ss_conf 78358999999987447898999999999998869815699887517---85589999999998858---57588----8
Q ss_pred HHHHCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9983999799--99999999998799999999999999729990999998999999633566414999999999999998
Q 002443 217 AALERPMYAE--AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (921)
Q Consensus 217 al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~ 294 (921)
.....+.... .....+..-....+.+.|...+.......+........ ....++......+..+.+...+.....
T Consensus 204 ~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~a~~~~~~~~~ 280 (450)
T d1qsaa1 204 FARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQE---LRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (450)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH---HHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 87537887011178999999874248557999987521202356799999---999999999876863999999986012
Q ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 58999999999999999739969999999999860999999999999999986998999999999996
Q 002443 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (921)
Q Consensus 295 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (921)
.......... ++......+++..+...+...-..........+-+|..+...|+.++|..+|..+..
T Consensus 281 ~~~~~~~~~w-~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 281 RSQSTSLIER-RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp TCCCHHHHHH-HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 3466699999-999998829869999999865846242899999999999983981568999999845
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=95.73 E-value=0.039 Score=27.26 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=95.5
Q ss_pred CCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHH
Q ss_conf 778971898338877--579889999999996759908998227889978999999999984999997777368679077
Q 002443 655 LTNGFITFGSFNNLA--KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 655 ~~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~ 732 (921)
.+.+.+++.++++.. +.......+...+....+...+++-..+ ....+......... ..++.+.+.++ +.+
T Consensus 192 ~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p~~~--~~~~~~~~~~~~~~----~~n~~~~~~l~-~~~ 264 (373)
T d1v4va_ 192 LPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHL--NPVVREAVFPVLKG----VRNFVLLDPLE-YGS 264 (373)
T ss_dssp CCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCS--CHHHHHHHHHHHTT----CTTEEEECCCC-HHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC--CCCCHHHHHHHHCC----CCCCEEECCCH-HHH
T ss_conf 344553168842655531278999999998653356503564034--22210355554303----33200111000-788
Q ss_pred HHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHH
Q ss_conf 99751456588269899994218987440996872379965665205787640885211489879999999971499999
Q 002443 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 812 (921)
Q Consensus 733 ~~~~~~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~ 812 (921)
++..+..|++++ -++|....||.++|+|||++.-.+ .|.-+ + ..|-.-+|..|.++-......+..++..+
T Consensus 265 ~l~ll~~s~~vi----gnSssgi~Ea~~lg~P~Inir~~~--eRqeg--~-~~g~nvlv~~d~~~I~~~i~~~l~~~~~~ 335 (373)
T d1v4va_ 265 MAALMRASLLLV----TDSGGLQEEGAALGVPVVVLRNVT--ERPEG--L-KAGILKLAGTDPEGVYRVVKGLLENPEEL 335 (373)
T ss_dssp HHHHHHTEEEEE----ESCHHHHHHHHHTTCCEEECSSSC--SCHHH--H-HHTSEEECCSCHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHCEEEE----CCCCHHHHCCHHHCCCEEEECCCC--CCHHH--H-HCCEEEECCCCHHHHHHHHHHHHCCHHHH
T ss_conf 888764301685----064122220032058689848876--69878--9-62904975899999999999997198988
Q ss_pred HHH
Q ss_conf 999
Q 002443 813 ANL 815 (921)
Q Consensus 813 ~~~ 815 (921)
..+
T Consensus 336 ~~~ 338 (373)
T d1v4va_ 336 SRM 338 (373)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 640
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.71 E-value=0.078 Score=25.21 Aligned_cols=134 Identities=15% Similarity=0.082 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 36989999999996899999999999999809998899999899999817999999999999980999788999999999
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (921)
+.-..-..|..+.+.|.|+.|..+|... .+ +-....++...++++.|.+.+.+. ++...|......+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~-----~d---~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l 79 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN---FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 79 (336)
T ss_dssp ----------------CTTTHHHHHHHT-----TC---HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHC-----CC---HHHHHHHHHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_conf 8578999999998787799999999867-----89---999999997031599999999880-----8899999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 983997999999999996399995768899999998899999709929999999999941999999999999999981
Q 002443 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (921)
........+..+ ...+. ..++. +......+...|.+++.+.+++..+...+.....+..++.+|.+.
T Consensus 80 ~~~~e~~la~i~-~~~~~---~~~d~-------l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 80 VDGKEFRLAQMC-GLHIV---VHADE-------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHTTCHHHHHHT-TTTTT---TCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHCCHHHHHHHH-HHHHH---CCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 727287899999-98753---57887-------899999998769859999999999757744467999999999986
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.25 E-value=0.099 Score=24.52 Aligned_cols=282 Identities=11% Similarity=-0.007 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99998999998179999999999999809997889999999999839979999999999963999957688999999988
Q 002443 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (921)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 163 (921)
-.-..|..+...|.|+.|...|... .-+..+..++...++++.|.+.+.+. +.... +...
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~-------~k~~ 75 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRT-------WKEV 75 (336)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHH-------HHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHC--------CCHHHHHHHHHHHCCHHHHHHHHHHC-----CCHHH-------HHHH
T ss_conf 8999999998787799999999867--------89999999997031599999999880-----88999-------9999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999709929999999999941999999999999999981999999999999998399979999999999998799999
Q 002443 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243 (921)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 243 (921)
...+.......-+... .. .....+.-.......|...|.+++.+.+++..+...+.+...+..++.+|.+.+ .++
T Consensus 76 ~~~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~k 150 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQK 150 (336)
T ss_dssp HHHHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHCCHHHHHHHH-HH---HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-HHH
T ss_conf 9999727287899999-98---753578878999999987698599999999997577444679999999999869-499
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999972999099999899999963356641499999999999999858999999999999999739969999999
Q 002443 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (921)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 323 (921)
-.+.++.. ... =+..+++..+++. ..|..+..+|...+++++|+..+
T Consensus 151 l~e~l~~~---s~~----------------------y~~~k~~~~c~~~--------~l~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 151 MREHLELF---WSR----------------------VNIPKVLRAAEQA--------HLWAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HHHHHHHH---STT----------------------SCHHHHHHHHHTT--------TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHC---CCC----------------------CCHHHHHHHHHHC--------CCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999860---235----------------------9999999998874--------87499999998558799999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH----------HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99986099999999999999998699899999999999609999999----------99999999991999999999999
Q 002443 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS----------LNNLGVVYTVQGKMDAAAEMIEK 393 (921)
Q Consensus 324 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------~~~la~~~~~~g~~~~A~~~l~~ 393 (921)
-.-. .+..-....-.++.+..+.+..-+...-.++.+|....- ...+.....+.++..-...+++.
T Consensus 198 i~~~----~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~ 273 (336)
T d1b89a_ 198 MNHP----TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 273 (336)
T ss_dssp HHST----TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred HHCC----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9765----445669999999972478699999999999759999999999856579989999999853880779999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9992999799999999999990999999999999862099
Q 002443 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 394 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
... .++..+...++.+|...++++. .++.++..-
T Consensus 274 v~~--~n~~~vn~al~~lyie~~d~~~----l~~~i~~~~ 307 (336)
T d1b89a_ 274 VQN--HNNKSVNESLNNLFITEEDYQA----LRTSIDAYD 307 (336)
T ss_dssp HHT--TCCHHHHHHHHHHHHHTTCHHH----HHHHHHHCC
T ss_pred HHH--CCHHHHHHHHHHHHHCCCHHHH----HHHHHHHHC
T ss_conf 998--1809999999999867124678----999998713
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=93.23 E-value=0.15 Score=23.35 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=93.1
Q ss_pred CCCCCEEEEECCCCCCCCH---HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCH
Q ss_conf 7789718983388775798---8999999999675990899822788997899999999998499999777736867907
Q 002443 655 LTNGFITFGSFNNLAKITP---KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 655 ~~~~~~~~~~~~~~~K~~~---~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~ 731 (921)
+..+.+++.++++..-... ..+.....++...+...+++-..+ ....+ ......-...++|.+.+.++ +.
T Consensus 195 ~~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~----~~~~~~~~~~~ni~~~~~l~-~~ 267 (377)
T d1o6ca_ 195 VGEDKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHL--NPVVR----EAAHKHFGDSDRVHLIEPLE-VI 267 (377)
T ss_dssp TTTSEEEEECC----------HHHHHHHHHHHHHCTTEEEEEC------CHHH----HHHHHC--CCSSEEECCCCC-HH
T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCC----HHHHHCCCCCCCEEECCCCC-HH
T ss_conf 0578449998323101466337899998752123355653234552--11321----12210134565147513213-68
Q ss_pred HHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCC--CCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCH
Q ss_conf 7997514565882698999942189874409968723799--65665205787640885211489879999999971499
Q 002443 732 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDV 809 (921)
Q Consensus 732 ~~~~~~~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g~--~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~ 809 (921)
+++..+..|++++ -++|....||-++|+|||++... .-.+|.. |-.-++..+.++-....-.+.+|+
T Consensus 268 ~fl~llk~s~~vI----gnSss~i~Ea~~lg~P~Inir~~tERqe~~~~-------g~nilv~~~~~~I~~~i~~~l~~~ 336 (377)
T d1o6ca_ 268 DFHNFAAKSHFIL----TDSGGVQEEAPSLGKPVLVLRDTTERPEGVEA-------GTLKLAGTDEENIYQLAKQLLTDP 336 (377)
T ss_dssp HHHHHHHHCSEEE----EC--CHHHHGGGGTCCEEEECSCCC---CTTT-------TSSEEECSCHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHEEE----CCCCHHHHHHHHHHCEEEEECCCCCCCCHHHC-------CEEEECCCCHHHHHHHHHHHHHCH
T ss_conf 8999986422564----16404677666654148980788758220006-------805987899999999999997496
Q ss_pred HHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 9999999999997430999996
Q 002443 810 TALANLRMSLRDLMSKSPVCDG 831 (921)
Q Consensus 810 ~~~~~~r~~~~~~~~~~~~~~~ 831 (921)
..... +... ..|..|+
T Consensus 337 ~~~~~----~~~~--~npYGdG 352 (377)
T d1o6ca_ 337 DEYKK----MSQA--SNPYGDG 352 (377)
T ss_dssp HHHHH----HHHC--CCTTCCS
T ss_pred HHHHH----HCCC--CCCCCCC
T ss_conf 87763----0658--8989898
|